Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/7e19807cf839588edacacffc6054af/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusionreport.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/5668ba05b7dac7efb0f8d61138c4a0/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/5668ba05b7dac7efb0f8d61138c4a0/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/92a5901f60f4b431891fbccae8c25b/786-O_FFPE_RNA_0001_B23LG7FLT4_2_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/92a5901f60f4b431891fbccae8c25b/786-O_FFPE_RNA_0001_B23LG7FLT4_2_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusionreport.tsv --gtf /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2 --shrink_introns --max_intron_length 1000
Done.
Execution Time = 0.12 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusionreport.tsv --gtf /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2 --shrink_introns --max_intron_length 1000
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf > /tmp/nxf.MwmX46TKLS/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf > /tmp/nxf.MwmX46TKLS/cytoBand.txt
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed
-parsing GTF file: /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.sorted.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.sorted.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.sorted.bed.gz
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.bed.tabix.ok
Running: samtools faidx /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa --max_mate_dist 100000 -G /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --CPU 8 --out_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_2.star --out_dir /tmp/nxf.MwmX46TKLS/fi_workdir --reads "/tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_1.fastp.fastq.gz /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_1.fastp.fastq.gz /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
Jun 08 10:06:54 ..... started STAR run
Jun 08 10:06:54 ..... loading genome
Jun 08 10:08:37 ... generating Suffix Array index
Jun 08 10:12:27 ... completed Suffix Array index
Jun 08 10:12:27 ..... processing annotations GTF
Jun 08 10:12:27 ..... inserting junctions into the genome indices
Jun 08 10:13:29 ..... started mapping
Jun 08 11:15:44 ..... finished mapping
Jun 08 11:15:46 ..... started sorting BAM
Jun 08 11:15:47 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam 786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.sortedByCoord.out.bam
* Running CMD: samtools index 786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.sortedByCoord.out.bam
Execution Time = 68.91 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa --max_mate_dist 100000 -G /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --CPU 8 --out_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_2.star --out_dir /tmp/nxf.MwmX46TKLS/fi_workdir --reads "/tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_1.fastp.fastq.gz /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_2.fastp.fastq.gz"
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.sortedByCoord.out.bam -o /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam --remove_dups
11:16:02 : INFO : Done.
Execution Time = 0.21 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.sortedByCoord.out.bam -o /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam --remove_dups
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam
Execution Time = 0.03 minutes. CMD: samtools index /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf
-parsing /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam
[10000]
[20000]
[30000]
[40000]
[50000]
[60000]
[70000]
[80000]
[90000]
[100000]
[110000]
[120000]
[130000]
[140000]
[150000]
[160000]
[170000]
[180000]
[190000]
[200000]
[210000]
[220000]
[230000]
[240000]
[250000]
[260000]
[270000]
[280000]
[290000]
[300000]
[310000]
[320000]
[330000]
[340000]
[350000]
[360000]
[370000]
[380000]
[390000]
[400000]
[410000]
[420000]
[430000]
[440000]
[450000]
[460000]
[470000]
[480000]
[490000]
[500000]
[510000]
[520000]
[530000]
[540000]
[550000]
[560000]
[570000]
[580000]
[590000]
[600000]
[610000]
[620000]
[630000]
[640000]
[650000]
[660000]
[670000]
[680000]
[690000]
[700000]
[710000]
[720000]
[730000]
[740000]
[750000]
[760000]
[770000]
[780000]
[790000]
[800000]
[810000]
[820000]
[830000]
[840000]
[850000]
[860000]
[870000]
[880000]
[890000]
[900000]
[910000]
[920000]
[930000]
[940000]
[950000]
[960000]
[970000]
[980000]
[990000]
[1000000]
[1010000]
[1020000]
[1030000]
[1040000]
[1050000]
[1060000]
[1070000]
[1080000]
[1090000]
[1100000]
[1110000]
[1120000]
[1130000]
[1140000]
[1150000]
[1160000]
[1170000]
[1180000]
[1190000]
[1200000]
[1210000]
[1220000]
[1230000]
[1240000]
[1250000]
[1260000]
[1270000]
[1280000]
[1290000]
[1300000]
[1310000]
[1320000]
[1330000]
[1340000]
[1350000]
[1360000]
[1370000]
[1380000]
[1390000]
[1400000]
[1410000]
[1420000]
[1430000]
[1440000]
[1450000]
[1460000]
[1470000]
[1480000]
[1490000]
[1500000]
[1510000]
[1520000]
[1530000]
[1540000]
[1550000]
[1560000]
[1570000]
[1580000]
[1590000]
[1600000]
[1610000]
[1620000]
[1630000]
[1640000]
[1650000]
[1660000]
[1670000]
[1680000]
[1690000]
[1700000]
[1710000]
[1720000]
[1730000]
[1740000]
[1750000]
[1760000]
[1770000]
[1780000]
[1790000]
[1800000]
[1810000]
[1820000]
[1830000]
[1840000]
[1850000]
[1860000]
[1870000]
[1880000]
[1890000]
[1900000]
[1910000]
[1920000]
[1930000]
[1940000]
[1950000]
[1960000]
[1970000]
[1980000]
[1990000]
[2000000]
[2010000]
[2020000]
[2030000]
[2040000]
[2050000]
[2060000]
[2070000]
[2080000]
[2090000]
[2100000]
[2110000]
[2120000]
[2130000]
[2140000]
[2150000]
[2160000]
[2170000]
[2180000]
[2190000]
[2200000]
[2210000]
[2220000]
[2230000]
[2240000]
[2250000]
[2260000]
[2270000]
[2280000]
[2290000]
[2300000]
[2310000]
[2320000]
[2330000]
[2340000]
[2350000]
[2360000] -done parsing /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'per_id < 96' => 13454,
'low complexity anchor region' => 14,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 8,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 7,
'exons hit < 2' => 7,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 400,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 6,
'excessive soft clipping' => 15270,
' ** passed ** ' => 46940,
'seq-similar region overlap' => 16,
'small anchor length' => 242,
'num genes matched < 2' => 5
};
-writing fusion junction support info.
Execution Time = 1.33 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000] -fusion SPANNING read extraction for scaff: AC008969.1--SMARCA4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000] -fusion SPANNING read extraction for scaff: ARHGEF3--RRP9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000] -fusion SPANNING read extraction for scaff: ATAD2B--KLHL29
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000] -fusion SPANNING read extraction for scaff: BNC2--AL358117.1
[1000] -fusion SPANNING read extraction for scaff: CCDC169--SOHLH2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000] -fusion SPANNING read extraction for scaff: CENPU--ENPP6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000] -fusion SPANNING read extraction for scaff: DHX38--AMPD1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: GUSBP13--NAIP
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000] -fusion SPANNING read extraction for scaff: HIF1A--SNAPC1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000] -fusion SPANNING read extraction for scaff: HMGB3P23--ACO1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000] -fusion SPANNING read extraction for scaff: HTR7--LINC02653
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000]
[720000]
[721000]
[722000]
[723000]
[724000]
[725000]
[726000]
[727000]
[728000]
[729000]
[730000]
[731000]
[732000]
[733000]
[734000]
[735000]
[736000]
[737000]
[738000]
[739000]
[740000]
[741000]
[742000]
[743000]
[744000]
[745000]
[746000] -fusion SPANNING read extraction for scaff: LMNA--MEX3A
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000] -fusion SPANNING read extraction for scaff: LRP1B--AC078882.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000] -fusion SPANNING read extraction for scaff: RNA5SP281--ACO1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000] -fusion SPANNING read extraction for scaff: TMED7--TICAM2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000] -fusion SPANNING read extraction for scaff: ZKSCAN7--KIF15
-filtered reads reasons: $VAR1 = {
'lacks exon overlap' => 28911,
'seq similar region alignment' => 16316
};
Execution Time = 3.44 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -9344.191719
EM: Round [1] log likelihood: -9339.826043
EM: Round [2] log likelihood: -9339.798277
EM: Round [3] log likelihood: -9339.781990
EM: Round [4] log likelihood: -9339.766025
EM: Round [5] log likelihood: -9339.750162
EM: Round [6] log likelihood: -9339.734391
EM: Round [7] log likelihood: -9339.718712
EM: Round [8] log likelihood: -9339.703122
EM: Round [9] log likelihood: -9339.687622
EM: Round [10] log likelihood: -9339.672211
EM: Round [11] log likelihood: -9339.656887
EM: Round [12] log likelihood: -9339.641650
EM: Round [13] log likelihood: -9339.626498
EM: Round [14] log likelihood: -9339.611432
EM: Round [15] log likelihood: -9339.596450
EM: Round [16] log likelihood: -9339.581552
EM: Round [17] log likelihood: -9339.566736
EM: Round [18] log likelihood: -9339.552002
EM: Round [19] log likelihood: -9339.537349
EM: Round [20] log likelihood: -9339.522776
EM: Round [21] log likelihood: -9339.508283
EM: Round [22] log likelihood: -9339.493869
EM: Round [23] log likelihood: -9339.479533
EM: Round [24] log likelihood: -9339.465274
EM: Round [25] log likelihood: -9339.451091
EM: Round [26] log likelihood: -9339.436985
EM: Round [27] log likelihood: -9339.422954
EM: Round [28] log likelihood: -9339.408997
EM: Round [29] log likelihood: -9339.395115
EM: Round [30] log likelihood: -9339.381305
EM: Round [31] log likelihood: -9339.367568
EM: Round [32] log likelihood: -9339.353903
EM: Round [33] log likelihood: -9339.340310
EM: Round [34] log likelihood: -9339.326787
EM: Round [35] log likelihood: -9339.313334
EM: Round [36] log likelihood: -9339.299950
EM: Round [37] log likelihood: -9339.286635
EM: Round [38] log likelihood: -9339.273389
EM: Round [39] log likelihood: -9339.260209
EM: Round [40] log likelihood: -9339.247097
EM: Round [41] log likelihood: -9339.234052
EM: Round [42] log likelihood: -9339.221072
EM: Round [43] log likelihood: -9339.208158
EM: Round [44] log likelihood: -9339.195308
EM: Round [45] log likelihood: -9339.182523
EM: Round [46] log likelihood: -9339.169801
EM: Round [47] log likelihood: -9339.157143
EM: Round [48] log likelihood: -9339.144547
EM: Round [49] log likelihood: -9339.132013
EM: Round [50] log likelihood: -9339.119540
EM: Round [51] log likelihood: -9339.107129
EM: Round [52] log likelihood: -9339.094779
EM: Round [53] log likelihood: -9339.082488
EM: Round [54] log likelihood: -9339.070257
EM: Round [55] log likelihood: -9339.058085
EM: Round [56] log likelihood: -9339.045972
EM: Round [57] log likelihood: -9339.033917
EM: Round [58] log likelihood: -9339.021920
EM: Round [59] log likelihood: -9339.009980
EM: Round [60] log likelihood: -9338.998097
EM: Round [61] log likelihood: -9338.986270
EM: Round [62] log likelihood: -9338.974499
EM: Round [63] log likelihood: -9338.962783
EM: Round [64] log likelihood: -9338.951123
EM: Round [65] log likelihood: -9338.939517
EM: Round [66] log likelihood: -9338.927965
EM: Round [67] log likelihood: -9338.916467
EM: Round [68] log likelihood: -9338.905022
EM: Round [69] log likelihood: -9338.893630
EM: Round [70] log likelihood: -9338.882291
EM: Round [71] log likelihood: -9338.871004
EM: Round [72] log likelihood: -9338.859769
EM: Round [73] log likelihood: -9338.848584
EM: Round [74] log likelihood: -9338.837451
EM: Round [75] log likelihood: -9338.826369
EM: Round [76] log likelihood: -9338.815336
EM: Round [77] log likelihood: -9338.804354
EM: Round [78] log likelihood: -9338.793421
EM: Round [79] log likelihood: -9338.782537
EM: Round [80] log likelihood: -9338.771702
EM: Round [81] log likelihood: -9338.760915
EM: Round [82] log likelihood: -9338.750176
EM: Round [83] log likelihood: -9338.739485
EM: Round [84] log likelihood: -9338.728841
EM: Round [85] log likelihood: -9338.718244
EM: Round [86] log likelihood: -9338.707693
EM: Round [87] log likelihood: -9338.697189
EM: Round [88] log likelihood: -9338.686731
EM: Round [89] log likelihood: -9338.676319
EM: Round [90] log likelihood: -9338.665952
EM: Round [91] log likelihood: -9338.655630
EM: Round [92] log likelihood: -9338.645352
EM: Round [93] log likelihood: -9338.635119
EM: Round [94] log likelihood: -9338.624930
EM: Round [95] log likelihood: -9338.614785
EM: Round [96] log likelihood: -9338.604683
EM: Round [97] log likelihood: -9338.594625
EM: Round [98] log likelihood: -9338.584609
EM: Round [99] log likelihood: -9338.574636
EM: Round [100] log likelihood: -9338.564705
EM: Round [101] log likelihood: -9338.554816
EM: Round [102] log likelihood: -9338.544968
EM: Round [103] log likelihood: -9338.535162
EM: Round [104] log likelihood: -9338.525397
EM: Round [105] log likelihood: -9338.515673
EM: Round [106] log likelihood: -9338.505990
EM: Round [107] log likelihood: -9338.496347
EM: Round [108] log likelihood: -9338.486744
EM: Round [109] log likelihood: -9338.477180
EM: Round [110] log likelihood: -9338.467656
EM: Round [111] log likelihood: -9338.458172
EM: Round [112] log likelihood: -9338.448726
EM: Round [113] log likelihood: -9338.439319
EM: Round [114] log likelihood: -9338.429950
EM: Round [115] log likelihood: -9338.420620
EM: Round [116] log likelihood: -9338.411328
EM: Round [117] log likelihood: -9338.402073
EM: Round [118] log likelihood: -9338.392856
EM: Round [119] log likelihood: -9338.383676
EM: Round [120] log likelihood: -9338.374533
EM: Round [121] log likelihood: -9338.365427
EM: Round [122] log likelihood: -9338.356357
EM: Round [123] log likelihood: -9338.347324
EM: Round [124] log likelihood: -9338.338326
EM: Round [125] log likelihood: -9338.329365
EM: Round [126] log likelihood: -9338.320439
EM: Round [127] log likelihood: -9338.311548
EM: Round [128] log likelihood: -9338.302693
EM: Round [129] log likelihood: -9338.293872
EM: Round [130] log likelihood: -9338.285086
EM: Round [131] log likelihood: -9338.276335
EM: Round [132] log likelihood: -9338.267618
EM: Round [133] log likelihood: -9338.258935
EM: Round [134] log likelihood: -9338.250286
EM: Round [135] log likelihood: -9338.241670
EM: Round [136] log likelihood: -9338.233088
EM: Round [137] log likelihood: -9338.224539
EM: Round [138] log likelihood: -9338.216023
EM: Round [139] log likelihood: -9338.207540
EM: Round [140] log likelihood: -9338.199090
EM: Round [141] log likelihood: -9338.190672
EM: Round [142] log likelihood: -9338.182287
EM: Round [143] log likelihood: -9338.173933
EM: Round [144] log likelihood: -9338.165611
EM: Round [145] log likelihood: -9338.157321
EM: Round [146] log likelihood: -9338.149063
EM: Round [147] log likelihood: -9338.140835
EM: Round [148] log likelihood: -9338.132639
EM: Round [149] log likelihood: -9338.124474
EM: Round [150] log likelihood: -9338.116339
EM: Round [151] log likelihood: -9338.108235
EM: Round [152] log likelihood: -9338.100161
EM: Round [153] log likelihood: -9338.092118
EM: Round [154] log likelihood: -9338.084105
EM: Round [155] log likelihood: -9338.076121
EM: Round [156] log likelihood: -9338.068167
EM: Round [157] log likelihood: -9338.060243
EM: Round [158] log likelihood: -9338.052348
EM: Round [159] log likelihood: -9338.044482
EM: Round [160] log likelihood: -9338.036645
EM: Round [161] log likelihood: -9338.028837
EM: Round [162] log likelihood: -9338.021057
EM: Round [163] log likelihood: -9338.013306
EM: Round [164] log likelihood: -9338.005584
EM: Round [165] log likelihood: -9337.997889
EM: Round [166] log likelihood: -9337.990223
EM: Round [167] log likelihood: -9337.982584
EM: Round [168] log likelihood: -9337.974974
EM: Round [169] log likelihood: -9337.967390
EM: Round [170] log likelihood: -9337.959834
EM: Round [171] log likelihood: -9337.952306
EM: Round [172] log likelihood: -9337.944804
EM: Round [173] log likelihood: -9337.937330
EM: Round [174] log likelihood: -9337.929882
EM: Round [175] log likelihood: -9337.922461
EM: Round [176] log likelihood: -9337.915066
EM: Round [177] log likelihood: -9337.907698
EM: Round [178] log likelihood: -9337.900356
EM: Round [179] log likelihood: -9337.893040
EM: Round [180] log likelihood: -9337.885750
EM: Round [181] log likelihood: -9337.878485
EM: Round [182] log likelihood: -9337.871247
EM: Round [183] log likelihood: -9337.864033
EM: Round [184] log likelihood: -9337.856846
EM: Round [185] log likelihood: -9337.849683
EM: Round [186] log likelihood: -9337.842546
EM: Round [187] log likelihood: -9337.835433
EM: Round [188] log likelihood: -9337.828345
EM: Round [189] log likelihood: -9337.821282
EM: Round [190] log likelihood: -9337.814244
EM: Round [191] log likelihood: -9337.807230
EM: Round [192] log likelihood: -9337.800240
EM: Round [193] log likelihood: -9337.793275
EM: Round [194] log likelihood: -9337.786333
EM: Round [195] log likelihood: -9337.779416
EM: Round [196] log likelihood: -9337.772522
EM: Round [197] log likelihood: -9337.765652
EM: Round [198] log likelihood: -9337.758806
EM: Round [199] log likelihood: -9337.751982
EM: Round [200] log likelihood: -9337.745183
EM: Round [201] log likelihood: -9337.738406
EM: Round [202] log likelihood: -9337.731653
EM: Round [203] log likelihood: -9337.724922
EM: Round [204] log likelihood: -9337.718214
EM: Round [205] log likelihood: -9337.711529
EM: Round [206] log likelihood: -9337.704867
EM: Round [207] log likelihood: -9337.698227
EM: Round [208] log likelihood: -9337.691609
EM: Round [209] log likelihood: -9337.685014
EM: Round [210] log likelihood: -9337.678441
EM: Round [211] log likelihood: -9337.671890
EM: Round [212] log likelihood: -9337.665360
EM: Round [213] log likelihood: -9337.658853
EM: Round [214] log likelihood: -9337.652367
EM: Round [215] log likelihood: -9337.645903
EM: Round [216] log likelihood: -9337.639460
EM: Round [217] log likelihood: -9337.633039
EM: Round [218] log likelihood: -9337.626639
EM: Round [219] log likelihood: -9337.620260
EM: Round [220] log likelihood: -9337.613902
EM: Round [221] log likelihood: -9337.607566
EM: Round [222] log likelihood: -9337.601250
EM: Round [223] log likelihood: -9337.594954
EM: Round [224] log likelihood: -9337.588680
EM: Round [225] log likelihood: -9337.582426
EM: Round [226] log likelihood: -9337.576192
EM: Round [227] log likelihood: -9337.569979
EM: Round [228] log likelihood: -9337.563786
EM: Round [229] log likelihood: -9337.557613
EM: Round [230] log likelihood: -9337.551460
EM: Round [231] log likelihood: -9337.545327
EM: Round [232] log likelihood: -9337.539214
EM: Round [233] log likelihood: -9337.533121
EM: Round [234] log likelihood: -9337.527047
EM: Round [235] log likelihood: -9337.520993
EM: Round [236] log likelihood: -9337.514959
EM: Round [237] log likelihood: -9337.508944
EM: Round [238] log likelihood: -9337.502948
EM: Round [239] log likelihood: -9337.496971
EM: Round [240] log likelihood: -9337.491014
EM: Round [241] log likelihood: -9337.485075
EM: Round [242] log likelihood: -9337.479155
EM: Round [243] log likelihood: -9337.473255
EM: Round [244] log likelihood: -9337.467373
EM: Round [245] log likelihood: -9337.461509
EM: Round [246] log likelihood: -9337.455665
EM: Round [247] log likelihood: -9337.449838
EM: Round [248] log likelihood: -9337.444030
EM: Round [249] log likelihood: -9337.438241
EM: Round [250] log likelihood: -9337.432470
EM: Round [251] log likelihood: -9337.426716
EM: Round [252] log likelihood: -9337.420981
EM: Round [253] log likelihood: -9337.415264
EM: Round [254] log likelihood: -9337.409565
EM: Round [255] log likelihood: -9337.403884
EM: Round [256] log likelihood: -9337.398220
EM: Round [257] log likelihood: -9337.392574
EM: Round [258] log likelihood: -9337.386945
EM: Round [259] log likelihood: -9337.381334
EM: Round [260] log likelihood: -9337.375741
EM: Round [261] log likelihood: -9337.370165
EM: Round [262] log likelihood: -9337.364606
EM: Round [263] log likelihood: -9337.359064
EM: Round [264] log likelihood: -9337.353539
EM: Round [265] log likelihood: -9337.348032
EM: Round [266] log likelihood: -9337.342541
EM: Round [267] log likelihood: -9337.337067
EM: Round [268] log likelihood: -9337.331610
EM: Round [269] log likelihood: -9337.326170
EM: Round [270] log likelihood: -9337.320746
EM: Round [271] log likelihood: -9337.315339
EM: Round [272] log likelihood: -9337.309948
EM: Round [273] log likelihood: -9337.304574
EM: Round [274] log likelihood: -9337.299216
EM: Round [275] log likelihood: -9337.293875
EM: Round [276] log likelihood: -9337.288550
EM: Round [277] log likelihood: -9337.283240
EM: Round [278] log likelihood: -9337.277947
EM: Round [279] log likelihood: -9337.272670
EM: Round [280] log likelihood: -9337.267409
EM: Round [281] log likelihood: -9337.262163
EM: Round [282] log likelihood: -9337.256934
EM: Round [283] log likelihood: -9337.251720
EM: Round [284] log likelihood: -9337.246522
EM: Round [285] log likelihood: -9337.241339
EM: Round [286] log likelihood: -9337.236172
EM: Round [287] log likelihood: -9337.231020
EM: Round [288] log likelihood: -9337.225884
EM: Round [289] log likelihood: -9337.220763
EM: Round [290] log likelihood: -9337.215657
EM: Round [291] log likelihood: -9337.210567
EM: Round [292] log likelihood: -9337.205491
EM: Round [293] log likelihood: -9337.200431
EM: Round [294] log likelihood: -9337.195386
EM: Round [295] log likelihood: -9337.190355
EM: Round [296] log likelihood: -9337.185340
EM: Round [297] log likelihood: -9337.180339
EM: Round [298] log likelihood: -9337.175353
EM: Round [299] log likelihood: -9337.170381
EM: Round [300] log likelihood: -9337.165425
EM: Round [301] log likelihood: -9337.160483
EM: Round [302] log likelihood: -9337.155555
EM: Round [303] log likelihood: -9337.150641
EM: Round [304] log likelihood: -9337.145743
EM: Round [305] log likelihood: -9337.140858
EM: Round [306] log likelihood: -9337.135988
EM: Round [307] log likelihood: -9337.131131
EM: Round [308] log likelihood: -9337.126289
EM: Round [309] log likelihood: -9337.121461
EM: Round [310] log likelihood: -9337.116647
EM: Round [311] log likelihood: -9337.111847
EM: Round [312] log likelihood: -9337.107061
EM: Round [313] log likelihood: -9337.102289
EM: Round [314] log likelihood: -9337.097531
EM: Round [315] log likelihood: -9337.092786
EM: Round [316] log likelihood: -9337.088055
EM: Round [317] log likelihood: -9337.083337
EM: Round [318] log likelihood: -9337.078633
EM: Round [319] log likelihood: -9337.073943
EM: Round [320] log likelihood: -9337.069266
EM: Round [321] log likelihood: -9337.064602
EM: Round [322] log likelihood: -9337.059952
EM: Round [323] log likelihood: -9337.055315
EM: Round [324] log likelihood: -9337.050692
EM: Round [325] log likelihood: -9337.046081
EM: Round [326] log likelihood: -9337.041484
EM: Round [327] log likelihood: -9337.036899
EM: Round [328] log likelihood: -9337.032328
EM: Round [329] log likelihood: -9337.027770
EM: Round [330] log likelihood: -9337.023224
EM: Round [331] log likelihood: -9337.018692
EM: Round [332] log likelihood: -9337.014172
EM: Round [333] log likelihood: -9337.009665
EM: Round [334] log likelihood: -9337.005171
EM: Round [335] log likelihood: -9337.000689
EM: Round [336] log likelihood: -9336.996220
EM: Round [337] log likelihood: -9336.991764
EM: Round [338] log likelihood: -9336.987320
EM: Round [339] log likelihood: -9336.982888
EM: Round [340] log likelihood: -9336.978469
EM: Round [341] log likelihood: -9336.974063
EM: Round [342] log likelihood: -9336.969668
EM: Round [343] log likelihood: -9336.965286
EM: Round [344] log likelihood: -9336.960916
EM: Round [345] log likelihood: -9336.956558
EM: Round [346] log likelihood: -9336.952213
EM: Round [347] log likelihood: -9336.947879
EM: Round [348] log likelihood: -9336.943558
EM: Round [349] log likelihood: -9336.939248
EM: Round [350] log likelihood: -9336.934951
EM: Round [351] log likelihood: -9336.930665
EM: Round [352] log likelihood: -9336.926391
EM: Round [353] log likelihood: -9336.922129
EM: Round [354] log likelihood: -9336.917879
EM: Round [355] log likelihood: -9336.913641
EM: Round [356] log likelihood: -9336.909414
EM: Round [357] log likelihood: -9336.905198
EM: Round [358] log likelihood: -9336.900995
EM: Round [359] log likelihood: -9336.896803
EM: Round [360] log likelihood: -9336.892622
EM: Round [361] log likelihood: -9336.888453
EM: Round [362] log likelihood: -9336.884295
EM: Round [363] log likelihood: -9336.880148
EM: Round [364] log likelihood: -9336.876013
EM: Round [365] log likelihood: -9336.871889
EM: Round [366] log likelihood: -9336.867777
EM: Round [367] log likelihood: -9336.863675
EM: Round [368] log likelihood: -9336.859585
EM: Round [369] log likelihood: -9336.855506
EM: Round [370] log likelihood: -9336.851437
EM: Round [371] log likelihood: -9336.847380
EM: Round [372] log likelihood: -9336.843334
EM: Round [373] log likelihood: -9336.839299
EM: Round [374] log likelihood: -9336.835274
EM: Round [375] log likelihood: -9336.831261
EM: Round [376] log likelihood: -9336.827258
EM: Round [377] log likelihood: -9336.823266
EM: Round [378] log likelihood: -9336.819285
EM: Round [379] log likelihood: -9336.815315
EM: Round [380] log likelihood: -9336.811355
EM: Round [381] log likelihood: -9336.807406
EM: Round [382] log likelihood: -9336.803467
EM: Round [383] log likelihood: -9336.799539
EM: Round [384] log likelihood: -9336.795621
EM: Round [385] log likelihood: -9336.791714
EM: Round [386] log likelihood: -9336.787817
EM: Round [387] log likelihood: -9336.783931
EM: Round [388] log likelihood: -9336.780055
EM: Round [389] log likelihood: -9336.776189
EM: Round [390] log likelihood: -9336.772334
EM: Round [391] log likelihood: -9336.768489
EM: Round [392] log likelihood: -9336.764654
EM: Round [393] log likelihood: -9336.760829
EM: Round [394] log likelihood: -9336.757014
EM: Round [395] log likelihood: -9336.753210
EM: Round [396] log likelihood: -9336.749415
EM: Round [397] log likelihood: -9336.745631
EM: Round [398] log likelihood: -9336.741856
EM: Round [399] log likelihood: -9336.738091
EM: Round [400] log likelihood: -9336.734337
EM: Round [401] log likelihood: -9336.730592
EM: Round [402] log likelihood: -9336.726857
EM: Round [403] log likelihood: -9336.723132
EM: Round [404] log likelihood: -9336.719416
EM: Round [405] log likelihood: -9336.715710
EM: Round [406] log likelihood: -9336.712014
EM: Round [407] log likelihood: -9336.708328
EM: Round [408] log likelihood: -9336.704651
EM: Round [409] log likelihood: -9336.700984
EM: Round [410] log likelihood: -9336.697326
EM: Round [411] log likelihood: -9336.693678
EM: Round [412] log likelihood: -9336.690040
EM: Round [413] log likelihood: -9336.686411
EM: Round [414] log likelihood: -9336.682791
EM: Round [415] log likelihood: -9336.679181
EM: Round [416] log likelihood: -9336.675580
EM: Round [417] log likelihood: -9336.671988
EM: Round [418] log likelihood: -9336.668406
EM: Round [419] log likelihood: -9336.664833
EM: Round [420] log likelihood: -9336.661269
EM: Round [421] log likelihood: -9336.657714
EM: Round [422] log likelihood: -9336.654168
EM: Round [423] log likelihood: -9336.650632
EM: Round [424] log likelihood: -9336.647105
EM: Round [425] log likelihood: -9336.643587
EM: Round [426] log likelihood: -9336.640077
EM: Round [427] log likelihood: -9336.636577
EM: Round [428] log likelihood: -9336.633086
EM: Round [429] log likelihood: -9336.629604
EM: Round [430] log likelihood: -9336.626130
EM: Round [431] log likelihood: -9336.622666
EM: Round [432] log likelihood: -9336.619210
EM: Round [433] log likelihood: -9336.615764
EM: Round [434] log likelihood: -9336.612326
EM: Round [435] log likelihood: -9336.608896
EM: Round [436] log likelihood: -9336.605476
EM: Round [437] log likelihood: -9336.602064
EM: Round [438] log likelihood: -9336.598661
EM: Round [439] log likelihood: -9336.595266
EM: Round [440] log likelihood: -9336.591880
EM: Round [441] log likelihood: -9336.588503
EM: Round [442] log likelihood: -9336.585134
EM: Round [443] log likelihood: -9336.581774
EM: Round [444] log likelihood: -9336.578422
EM: Round [445] log likelihood: -9336.575079
EM: Round [446] log likelihood: -9336.571744
EM: Round [447] log likelihood: -9336.568418
EM: Round [448] log likelihood: -9336.565100
EM: Round [449] log likelihood: -9336.561790
EM: Round [450] log likelihood: -9336.558489
EM: Round [451] log likelihood: -9336.555196
EM: Round [452] log likelihood: -9336.551911
EM: Round [453] log likelihood: -9336.548634
EM: Round [454] log likelihood: -9336.545366
EM: Round [455] log likelihood: -9336.542106
EM: Round [456] log likelihood: -9336.538854
EM: Round [457] log likelihood: -9336.535610
EM: Round [458] log likelihood: -9336.532374
EM: Round [459] log likelihood: -9336.529147
EM: Round [460] log likelihood: -9336.525927
EM: Round [461] log likelihood: -9336.522715
EM: Round [462] log likelihood: -9336.519512
EM: Round [463] log likelihood: -9336.516316
EM: Round [464] log likelihood: -9336.513128
EM: Round [465] log likelihood: -9336.509949
EM: Round [466] log likelihood: -9336.506777
EM: Round [467] log likelihood: -9336.503613
EM: Round [468] log likelihood: -9336.500456
EM: Round [469] log likelihood: -9336.497308
EM: Round [470] log likelihood: -9336.494168
EM: Round [471] log likelihood: -9336.491035
EM: Round [472] log likelihood: -9336.487910
EM: Round [473] log likelihood: -9336.484792
EM: Round [474] log likelihood: -9336.481683
EM: Round [475] log likelihood: -9336.478581
EM: Round [476] log likelihood: -9336.475486
EM: Round [477] log likelihood: -9336.472399
EM: Round [478] log likelihood: -9336.469320
EM: Round [479] log likelihood: -9336.466249
EM: Round [480] log likelihood: -9336.463185
EM: Round [481] log likelihood: -9336.460128
EM: Round [482] log likelihood: -9336.457079
EM: Round [483] log likelihood: -9336.454037
EM: Round [484] log likelihood: -9336.451003
EM: Round [485] log likelihood: -9336.447977
EM: Round [486] log likelihood: -9336.444957
EM: Round [487] log likelihood: -9336.441945
EM: Round [488] log likelihood: -9336.438941
EM: Round [489] log likelihood: -9336.435943
EM: Round [490] log likelihood: -9336.432953
EM: Round [491] log likelihood: -9336.429971
EM: Round [492] log likelihood: -9336.426995
EM: Round [493] log likelihood: -9336.424027
EM: Round [494] log likelihood: -9336.421066
EM: Round [495] log likelihood: -9336.418112
EM: Round [496] log likelihood: -9336.415166
EM: Round [497] log likelihood: -9336.412226
EM: Round [498] log likelihood: -9336.409294
EM: Round [499] log likelihood: -9336.406368
EM: Round [500] log likelihood: -9336.403450
EM: Round [501] log likelihood: -9336.400539
EM: Round [502] log likelihood: -9336.397635
EM: Round [503] log likelihood: -9336.394738
EM: Round [504] log likelihood: -9336.391847
EM: Round [505] log likelihood: -9336.388964
EM: Round [506] log likelihood: -9336.386088
EM: Round [507] log likelihood: -9336.383219
EM: Round [508] log likelihood: -9336.380356
EM: Round [509] log likelihood: -9336.377501
EM: Round [510] log likelihood: -9336.374652
EM: Round [511] log likelihood: -9336.371810
EM: Round [512] log likelihood: -9336.368975
EM: Round [513] log likelihood: -9336.366147
EM: Round [514] log likelihood: -9336.363325
EM: Round [515] log likelihood: -9336.360510
EM: Round [516] log likelihood: -9336.357702
EM: Round [517] log likelihood: -9336.354901
EM: Round [518] log likelihood: -9336.352106
EM: Round [519] log likelihood: -9336.349318
EM: Round [520] log likelihood: -9336.346537
EM: Round [521] log likelihood: -9336.343762
EM: Round [522] log likelihood: -9336.340994
EM: Round [523] log likelihood: -9336.338232
EM: Round [524] log likelihood: -9336.335477
EM: Round [525] log likelihood: -9336.332729
EM: Round [526] log likelihood: -9336.329987
EM: Round [527] log likelihood: -9336.327252
EM: Round [528] log likelihood: -9336.324523
EM: Round [529] log likelihood: -9336.321800
EM: Round [530] log likelihood: -9336.319084
EM: Round [531] log likelihood: -9336.316374
EM: Round [532] log likelihood: -9336.313671
EM: Round [533] log likelihood: -9336.310974
EM: Round [534] log likelihood: -9336.308284
EM: Round [535] log likelihood: -9336.305600
EM: Round [536] log likelihood: -9336.302922
EM: Round [537] log likelihood: -9336.300250
EM: Round [538] log likelihood: -9336.297585
EM: Round [539] log likelihood: -9336.294926
EM: Round [540] log likelihood: -9336.292274
EM: Round [541] log likelihood: -9336.289627
EM: Round [542] log likelihood: -9336.286987
EM: Round [543] log likelihood: -9336.284353
EM: Round [544] log likelihood: -9336.281725
EM: Round [545] log likelihood: -9336.279103
EM: Round [546] log likelihood: -9336.276488
EM: Round [547] log likelihood: -9336.273878
EM: Round [548] log likelihood: -9336.271275
EM: Round [549] log likelihood: -9336.268677
EM: Round [550] log likelihood: -9336.266086
EM: Round [551] log likelihood: -9336.263501
EM: Round [552] log likelihood: -9336.260922
EM: Round [553] log likelihood: -9336.258349
EM: Round [554] log likelihood: -9336.255781
EM: Round [555] log likelihood: -9336.253220
EM: Round [556] log likelihood: -9336.250665
EM: Round [557] log likelihood: -9336.248116
EM: Round [558] log likelihood: -9336.245572
EM: Round [559] log likelihood: -9336.243035
EM: Round [560] log likelihood: -9336.240503
EM: Round [561] log likelihood: -9336.237978
EM: Round [562] log likelihood: -9336.235458
EM: Round [563] log likelihood: -9336.232944
EM: Round [564] log likelihood: -9336.230435
EM: Round [565] log likelihood: -9336.227933
EM: Round [566] log likelihood: -9336.225436
EM: Round [567] log likelihood: -9336.222945
EM: Round [568] log likelihood: -9336.220460
EM: Round [569] log likelihood: -9336.217981
EM: Round [570] log likelihood: -9336.215507
EM: Round [571] log likelihood: -9336.213039
EM: Round [572] log likelihood: -9336.210577
EM: Round [573] log likelihood: -9336.208120
EM: Round [574] log likelihood: -9336.205669
EM: Round [575] log likelihood: -9336.203224
EM: Round [576] log likelihood: -9336.200784
EM: Round [577] log likelihood: -9336.198350
EM: Round [578] log likelihood: -9336.195921
EM: Round [579] log likelihood: -9336.193498
EM: Round [580] log likelihood: -9336.191081
EM: Round [581] log likelihood: -9336.188669
EM: Round [582] log likelihood: -9336.186263
EM: Round [583] log likelihood: -9336.183862
EM: Round [584] log likelihood: -9336.181466
EM: Round [585] log likelihood: -9336.179076
EM: Round [586] log likelihood: -9336.176692
EM: Round [587] log likelihood: -9336.174313
EM: Round [588] log likelihood: -9336.171939
EM: Round [589] log likelihood: -9336.169571
EM: Round [590] log likelihood: -9336.167208
EM: Round [591] log likelihood: -9336.164851
EM: Round [592] log likelihood: -9336.162498
EM: Round [593] log likelihood: -9336.160152
EM: Round [594] log likelihood: -9336.157810
EM: Round [595] log likelihood: -9336.155474
EM: Round [596] log likelihood: -9336.153143
EM: Round [597] log likelihood: -9336.150818
EM: Round [598] log likelihood: -9336.148497
EM: Round [599] log likelihood: -9336.146182
EM: Round [600] log likelihood: -9336.143873
EM: Round [601] log likelihood: -9336.141568
EM: Round [602] log likelihood: -9336.139269
EM: Round [603] log likelihood: -9336.136975
EM: Round [604] log likelihood: -9336.134686
EM: Round [605] log likelihood: -9336.132402
EM: Round [606] log likelihood: -9336.130123
EM: Round [607] log likelihood: -9336.127850
EM: Round [608] log likelihood: -9336.125581
EM: Round [609] log likelihood: -9336.123318
EM: Round [610] log likelihood: -9336.121060
EM: Round [611] log likelihood: -9336.118807
EM: Round [612] log likelihood: -9336.116559
EM: Round [613] log likelihood: -9336.114316
EM: Round [614] log likelihood: -9336.112078
EM: Round [615] log likelihood: -9336.109845
EM: Round [616] log likelihood: -9336.107617
EM: Round [617] log likelihood: -9336.105394
EM: Round [618] log likelihood: -9336.103176
EM: Round [619] log likelihood: -9336.100963
EM: Round [620] log likelihood: -9336.098755
EM: Round [621] log likelihood: -9336.096551
EM: Round [622] log likelihood: -9336.094353
EM: Round [623] log likelihood: -9336.092160
EM: Round [624] log likelihood: -9336.089972
EM: Round [625] log likelihood: -9336.087788
EM: Round [626] log likelihood: -9336.085609
EM: Round [627] log likelihood: -9336.083436
EM: Round [628] log likelihood: -9336.081267
EM: Round [629] log likelihood: -9336.079103
EM: Round [630] log likelihood: -9336.076943
EM: Round [631] log likelihood: -9336.074789
EM: Round [632] log likelihood: -9336.072639
EM: Round [633] log likelihood: -9336.070494
EM: Round [634] log likelihood: -9336.068354
EM: Round [635] log likelihood: -9336.066218
EM: Round [636] log likelihood: -9336.064088
EM: Round [637] log likelihood: -9336.061962
EM: Round [638] log likelihood: -9336.059840
EM: Round [639] log likelihood: -9336.057724
EM: Round [640] log likelihood: -9336.055612
EM: Round [641] log likelihood: -9336.053505
EM: Round [642] log likelihood: -9336.051402
EM: Round [643] log likelihood: -9336.049304
EM: Round [644] log likelihood: -9336.047211
EM: Round [645] log likelihood: -9336.045122
EM: Round [646] log likelihood: -9336.043038
EM: Round [647] log likelihood: -9336.040959
EM: Round [648] log likelihood: -9336.038884
EM: Round [649] log likelihood: -9336.036814
EM: Round [650] log likelihood: -9336.034748
EM: Round [651] log likelihood: -9336.032687
EM: Round [652] log likelihood: -9336.030630
EM: Round [653] log likelihood: -9336.028578
EM: Round [654] log likelihood: -9336.026530
EM: Round [655] log likelihood: -9336.024487
EM: Round [656] log likelihood: -9336.022448
EM: Round [657] log likelihood: -9336.020414
EM: Round [658] log likelihood: -9336.018384
EM: Round [659] log likelihood: -9336.016359
EM: Round [660] log likelihood: -9336.014338
EM: Round [661] log likelihood: -9336.012322
EM: Round [662] log likelihood: -9336.010310
EM: Round [663] log likelihood: -9336.008302
EM: Round [664] log likelihood: -9336.006299
EM: Round [665] log likelihood: -9336.004300
EM: Round [666] log likelihood: -9336.002305
EM: Round [667] log likelihood: -9336.000315
EM: Round [668] log likelihood: -9335.998329
EM: Round [669] log likelihood: -9335.996348
EM: Round [670] log likelihood: -9335.994371
EM: Round [671] log likelihood: -9335.992398
EM: Round [672] log likelihood: -9335.990429
EM: Round [673] log likelihood: -9335.988465
EM: Round [674] log likelihood: -9335.986505
EM: Round [675] log likelihood: -9335.984549
EM: Round [676] log likelihood: -9335.982598
EM: Round [677] log likelihood: -9335.980650
EM: Round [678] log likelihood: -9335.978707
EM: Round [679] log likelihood: -9335.976768
EM: Round [680] log likelihood: -9335.974834
EM: Round [681] log likelihood: -9335.972903
EM: Round [682] log likelihood: -9335.970977
EM: Round [683] log likelihood: -9335.969055
EM: Round [684] log likelihood: -9335.967137
EM: Round [685] log likelihood: -9335.965223
EM: Round [686] log likelihood: -9335.963313
EM: Round [687] log likelihood: -9335.961408
EM: Round [688] log likelihood: -9335.959507
EM: Round [689] log likelihood: -9335.957609
EM: Round [690] log likelihood: -9335.955716
EM: Round [691] log likelihood: -9335.953827
EM: Round [692] log likelihood: -9335.951942
EM: Round [693] log likelihood: -9335.950061
EM: Round [694] log likelihood: -9335.948184
EM: Round [695] log likelihood: -9335.946311
EM: Round [696] log likelihood: -9335.944442
EM: Round [697] log likelihood: -9335.942577
EM: Round [698] log likelihood: -9335.940716
EM: Round [699] log likelihood: -9335.938859
EM: Round [700] log likelihood: -9335.937007
EM: Round [701] log likelihood: -9335.935158
EM: Round [702] log likelihood: -9335.933313
EM: Round [703] log likelihood: -9335.931472
EM: Round [704] log likelihood: -9335.929635
EM: Round [705] log likelihood: -9335.927802
EM: Round [706] log likelihood: -9335.925972
EM: Round [707] log likelihood: -9335.924147
EM: Round [708] log likelihood: -9335.922326
EM: Round [709] log likelihood: -9335.920508
EM: Round [710] log likelihood: -9335.918695
EM: Round [711] log likelihood: -9335.916885
EM: Round [712] log likelihood: -9335.915079
EM: Round [713] log likelihood: -9335.913277
EM: Round [714] log likelihood: -9335.911479
EM: Round [715] log likelihood: -9335.909685
EM: Round [716] log likelihood: -9335.907894
EM: Round [717] log likelihood: -9335.906108
EM: Round [718] log likelihood: -9335.904325
EM: Round [719] log likelihood: -9335.902546
EM: Round [720] log likelihood: -9335.900770
EM: Round [721] log likelihood: -9335.898999
EM: Round [722] log likelihood: -9335.897231
EM: Round [723] log likelihood: -9335.895467
EM: Round [724] log likelihood: -9335.893707
EM: Round [725] log likelihood: -9335.891950
EM: Round [726] log likelihood: -9335.890198
EM: Round [727] log likelihood: -9335.888448
EM: Round [728] log likelihood: -9335.886703
EM: Round [729] log likelihood: -9335.884961
EM: Round [730] log likelihood: -9335.883223
EM: Round [731] log likelihood: -9335.881489
EM: Round [732] log likelihood: -9335.879759
EM: Round [733] log likelihood: -9335.878032
EM: Round [734] log likelihood: -9335.876308
EM: Round [735] log likelihood: -9335.874589
EM: Round [736] log likelihood: -9335.872873
EM: Round [737] log likelihood: -9335.871160
EM: Round [738] log likelihood: -9335.869451
EM: Round [739] log likelihood: -9335.867746
EM: Round [740] log likelihood: -9335.866045
EM: Round [741] log likelihood: -9335.864347
EM: Round [742] log likelihood: -9335.862652
EM: Round [743] log likelihood: -9335.860961
EM: Round [744] log likelihood: -9335.859274
EM: Round [745] log likelihood: -9335.857590
EM: Round [746] log likelihood: -9335.855910
EM: Round [747] log likelihood: -9335.854233
EM: Round [748] log likelihood: -9335.852560
EM: Round [749] log likelihood: -9335.850890
EM: Round [750] log likelihood: -9335.849224
EM: Round [751] log likelihood: -9335.847562
EM: Round [752] log likelihood: -9335.845902
EM: Round [753] log likelihood: -9335.844247
EM: Round [754] log likelihood: -9335.842595
EM: Round [755] log likelihood: -9335.840946
EM: Round [756] log likelihood: -9335.839301
EM: Round [757] log likelihood: -9335.837659
EM: Round [758] log likelihood: -9335.836020
EM: Round [759] log likelihood: -9335.834385
EM: Round [760] log likelihood: -9335.832754
EM: Round [761] log likelihood: -9335.831126
EM: Round [762] log likelihood: -9335.829501
EM: Round [763] log likelihood: -9335.827879
EM: Round [764] log likelihood: -9335.826262
EM: Round [765] log likelihood: -9335.824647
EM: Round [766] log likelihood: -9335.823036
EM: Round [767] log likelihood: -9335.821428
EM: Round [768] log likelihood: -9335.819823
EM: Round [769] log likelihood: -9335.818222
EM: Round [770] log likelihood: -9335.816624
EM: Round [771] log likelihood: -9335.815030
EM: Round [772] log likelihood: -9335.813439
EM: Round [773] log likelihood: -9335.811851
EM: Round [774] log likelihood: -9335.810266
EM: Round [775] log likelihood: -9335.808685
EM: Round [776] log likelihood: -9335.807107
EM: Round [777] log likelihood: -9335.805532
EM: Round [778] log likelihood: -9335.803961
EM: Round [779] log likelihood: -9335.802392
EM: Round [780] log likelihood: -9335.800827
EM: Round [781] log likelihood: -9335.799266
EM: Round [782] log likelihood: -9335.797707
EM: Round [783] log likelihood: -9335.796152
EM: Round [784] log likelihood: -9335.794600
EM: Round [785] log likelihood: -9335.793051
EM: Round [786] log likelihood: -9335.791505
EM: Round [787] log likelihood: -9335.789963
EM: Round [788] log likelihood: -9335.788424
EM: Round [789] log likelihood: -9335.786888
EM: Round [790] log likelihood: -9335.785355
EM: Round [791] log likelihood: -9335.783825
EM: Round [792] log likelihood: -9335.782299
EM: Round [793] log likelihood: -9335.780775
EM: Round [794] log likelihood: -9335.779255
EM: Round [795] log likelihood: -9335.777738
EM: Round [796] log likelihood: -9335.776224
EM: Round [797] log likelihood: -9335.774713
EM: Round [798] log likelihood: -9335.773205
EM: Round [799] log likelihood: -9335.771701
EM: Round [800] log likelihood: -9335.770199
EM: Round [801] log likelihood: -9335.768701
EM: Round [802] log likelihood: -9335.767205
EM: Round [803] log likelihood: -9335.765713
EM: Round [804] log likelihood: -9335.764224
EM: Round [805] log likelihood: -9335.762737
EM: Round [806] log likelihood: -9335.761254
EM: Round [807] log likelihood: -9335.759774
EM: Round [808] log likelihood: -9335.758297
EM: Round [809] log likelihood: -9335.756823
EM: Round [810] log likelihood: -9335.755352
EM: Round [811] log likelihood: -9335.753884
EM: Round [812] log likelihood: -9335.752419
EM: Round [813] log likelihood: -9335.750957
EM: Round [814] log likelihood: -9335.749498
EM: Round [815] log likelihood: -9335.748042
EM: Round [816] log likelihood: -9335.746589
EM: Round [817] log likelihood: -9335.745139
EM: Round [818] log likelihood: -9335.743692
EM: Round [819] log likelihood: -9335.742248
EM: Round [820] log likelihood: -9335.740807
EM: Round [821] log likelihood: -9335.739369
EM: Round [822] log likelihood: -9335.737933
EM: Round [823] log likelihood: -9335.736501
EM: Round [824] log likelihood: -9335.735071
EM: Round [825] log likelihood: -9335.733645
EM: Round [826] log likelihood: -9335.732221
EM: Round [827] log likelihood: -9335.730801
EM: Round [828] log likelihood: -9335.729383
EM: Round [829] log likelihood: -9335.727968
EM: Round [830] log likelihood: -9335.726556
EM: Round [831] log likelihood: -9335.725146
EM: Round [832] log likelihood: -9335.723740
EM: Round [833] log likelihood: -9335.722337
EM: Round [834] log likelihood: -9335.720936
EM: Round [835] log likelihood: -9335.719538
EM: Round [836] log likelihood: -9335.718143
EM: Round [837] log likelihood: -9335.716751
EM: Round [838] log likelihood: -9335.715362
EM: Round [839] log likelihood: -9335.713976
EM: Round [840] log likelihood: -9335.712592
EM: Round [841] log likelihood: -9335.711211
EM: Round [842] log likelihood: -9335.709833
EM: Round [843] log likelihood: -9335.708458
EM: Round [844] log likelihood: -9335.707085
EM: Round [845] log likelihood: -9335.705716
EM: Round [846] log likelihood: -9335.704349
EM: Round [847] log likelihood: -9335.702985
EM: Round [848] log likelihood: -9335.701623
EM: Round [849] log likelihood: -9335.700265
EM: Round [850] log likelihood: -9335.698909
EM: Round [851] log likelihood: -9335.697556
EM: Round [852] log likelihood: -9335.696205
EM: Round [853] log likelihood: -9335.694857
EM: Round [854] log likelihood: -9335.693512
EM: Round [855] log likelihood: -9335.692170
EM: Round [856] log likelihood: -9335.690831
EM: Round [857] log likelihood: -9335.689494
EM: Round [858] log likelihood: -9335.688160
EM: Round [859] log likelihood: -9335.686828
EM: Round [860] log likelihood: -9335.685499
EM: Round [861] log likelihood: -9335.684173
EM: Round [862] log likelihood: -9335.682850
EM: Round [863] log likelihood: -9335.681529
EM: Round [864] log likelihood: -9335.680211
EM: Round [865] log likelihood: -9335.678896
EM: Round [866] log likelihood: -9335.677583
EM: Round [867] log likelihood: -9335.676273
EM: Round [868] log likelihood: -9335.674965
EM: Round [869] log likelihood: -9335.673660
EM: Round [870] log likelihood: -9335.672358
EM: Round [871] log likelihood: -9335.671058
EM: Round [872] log likelihood: -9335.669761
EM: Round [873] log likelihood: -9335.668466
EM: Round [874] log likelihood: -9335.667175
EM: Round [875] log likelihood: -9335.665885
EM: Round [876] log likelihood: -9335.664599
EM: Round [877] log likelihood: -9335.663314
EM: Round [878] log likelihood: -9335.662033
EM: Round [879] log likelihood: -9335.660754
EM: Round [880] log likelihood: -9335.659477
EM: Round [881] log likelihood: -9335.658204
EM: Round [882] log likelihood: -9335.656932
EM: Round [883] log likelihood: -9335.655663
EM: Round [884] log likelihood: -9335.654397
EM: Round [885] log likelihood: -9335.653133
EM: Round [886] log likelihood: -9335.651872
EM: Round [887] log likelihood: -9335.650614
EM: Round [888] log likelihood: -9335.649357
EM: Round [889] log likelihood: -9335.648104
EM: Round [890] log likelihood: -9335.646853
EM: Round [891] log likelihood: -9335.645604
EM: Round [892] log likelihood: -9335.644358
EM: Round [893] log likelihood: -9335.643114
EM: Round [894] log likelihood: -9335.641873
EM: Round [895] log likelihood: -9335.640634
EM: Round [896] log likelihood: -9335.639398
EM: Round [897] log likelihood: -9335.638164
EM: Round [898] log likelihood: -9335.636932
EM: Round [899] log likelihood: -9335.635704
EM: Round [900] log likelihood: -9335.634477
EM: Round [901] log likelihood: -9335.633253
EM: Round [902] log likelihood: -9335.632031
EM: Round [903] log likelihood: -9335.630812
EM: Round [904] log likelihood: -9335.629596
EM: Round [905] log likelihood: -9335.628381
EM: Round [906] log likelihood: -9335.627169
EM: Round [907] log likelihood: -9335.625960
EM: Round [908] log likelihood: -9335.624753
EM: Round [909] log likelihood: -9335.623548
EM: Round [910] log likelihood: -9335.622345
EM: Round [911] log likelihood: -9335.621146
EM: Round [912] log likelihood: -9335.619948
EM: Round [913] log likelihood: -9335.618753
EM: Round [914] log likelihood: -9335.617560
EM: Round [915] log likelihood: -9335.616369
EM: Round [916] log likelihood: -9335.615181
EM: Round [917] log likelihood: -9335.613995
EM: Round [918] log likelihood: -9335.612812
EM: Round [919] log likelihood: -9335.611631
EM: Round [920] log likelihood: -9335.610452
EM: Round [921] log likelihood: -9335.609276
EM: Round [922] log likelihood: -9335.608102
EM: Round [923] log likelihood: -9335.606930
EM: Round [924] log likelihood: -9335.605760
EM: Round [925] log likelihood: -9335.604593
EM: Round [926] log likelihood: -9335.603428
EM: Round [927] log likelihood: -9335.602266
EM: Round [928] log likelihood: -9335.601105
EM: Round [929] log likelihood: -9335.599947
EM: Round [930] log likelihood: -9335.598792
EM: Round [931] log likelihood: -9335.597638
EM: Round [932] log likelihood: -9335.596487
EM: Round [933] log likelihood: -9335.595338
EM: Round [934] log likelihood: -9335.594192
EM: Round [935] log likelihood: -9335.593047
EM: Round [936] log likelihood: -9335.591905
EM: Round [937] log likelihood: -9335.590765
EM: Round [938] log likelihood: -9335.589628
EM: Round [939] log likelihood: -9335.588492
EM: Round [940] log likelihood: -9335.587359
EM: Round [941] log likelihood: -9335.586228
EM: Round [942] log likelihood: -9335.585099
EM: Round [943] log likelihood: -9335.583973
EM: Round [944] log likelihood: -9335.582849
EM: Round [945] log likelihood: -9335.581726
EM: Round [946] log likelihood: -9335.580607
EM: Round [947] log likelihood: -9335.579489
EM: Round [948] log likelihood: -9335.578373
EM: Round [949] log likelihood: -9335.577260
EM: Round [950] log likelihood: -9335.576149
EM: Round [951] log likelihood: -9335.575040
EM: Round [952] log likelihood: -9335.573933
EM: Round [953] log likelihood: -9335.572829
EM: Round [954] log likelihood: -9335.571726
EM: Round [955] log likelihood: -9335.570626
EM: Round [956] log likelihood: -9335.569528
EM: Round [957] log likelihood: -9335.568432
EM: Round [958] log likelihood: -9335.567338
EM: Round [959] log likelihood: -9335.566246
EM: Round [960] log likelihood: -9335.565157
EM: Round [961] log likelihood: -9335.564069
EM: Round [962] log likelihood: -9335.562984
EM: Round [963] log likelihood: -9335.561900
EM: Round [964] log likelihood: -9335.560819
EM: Round [965] log likelihood: -9335.559740
EM: Round [966] log likelihood: -9335.558663
EM: Round [967] log likelihood: -9335.557589
EM: Round [968] log likelihood: -9335.556516
EM: Round [969] log likelihood: -9335.555445
EM: Round [970] log likelihood: -9335.554377
EM: Round [971] log likelihood: -9335.553310
EM: Round [972] log likelihood: -9335.552246
EM: Round [973] log likelihood: -9335.551184
EM: Round [974] log likelihood: -9335.550124
EM: Round [975] log likelihood: -9335.549065
EM: Round [976] log likelihood: -9335.548009
EM: Round [977] log likelihood: -9335.546955
EM: Round [978] log likelihood: -9335.545903
EM: Round [979] log likelihood: -9335.544853
EM: Round [980] log likelihood: -9335.543805
EM: Round [981] log likelihood: -9335.542760
EM: Round [982] log likelihood: -9335.541716
EM: Round [983] log likelihood: -9335.540674
EM: Round [984] log likelihood: -9335.539634
EM: Round [985] log likelihood: -9335.538596
EM: Round [986] log likelihood: -9335.537561
EM: Round [987] log likelihood: -9335.536527
EM: Round [988] log likelihood: -9335.535495
EM: Round [989] log likelihood: -9335.534465
EM: Round [990] log likelihood: -9335.533438
EM: Round [991] log likelihood: -9335.532412
EM: Round [992] log likelihood: -9335.531388
EM: Round [993] log likelihood: -9335.530366
EM: Round [994] log likelihood: -9335.529346
EM: Round [995] log likelihood: -9335.528329
EM: Round [996] log likelihood: -9335.527313
EM: Round [997] log likelihood: -9335.526299
EM: Round [998] log likelihood: -9335.525287
EM: Round [999] log likelihood: -9335.524277
EM: Round [1000] log likelihood: -9335.523269
EM: Round [1001] log likelihood: -9335.522263
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa - | samtools sort -@ 8 - -o /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.01 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa - | samtools sort -@ 8 - -o /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam"
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed
Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa - | samtools sort -@ 8 - -o /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam || :
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa - | samtools sort -@ 8 - -o /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam || :
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.star.cSorted.dupsMarked.bam /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam
Execution Time = 0.03 minutes. CMD: samtools index /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam --max_insert_size 10000000
-extracting read coordinates from /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam into /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam.read_coords
CMD: touch /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam.read_coords > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam.frag_coords > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam.frag_coords.coord_sorted
Execution Time = 0.60 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam --max_insert_size 10000000
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam.frag_coords > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.FusionJuncSpan
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.consolidated.bam.frag_coords > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.FusionJuncSpan
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.Pfam.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.Pfam.gff3
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.Pfam.gff3 > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.Pfam.gff3 > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.Pfam.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.seqsimilar.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.seqsimilar.gff3
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.seqsimilar.gff3 > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.seqsimilar.gff3 > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.igv.seqsimilar.bed
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa > /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.MwmX46TKLS/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir
-done, see /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -8861.512261
EM: Round [1] log likelihood: -8860.974928
EM: Round [2] log likelihood: -8860.943769
EM: Round [3] log likelihood: -8860.917689
EM: Round [4] log likelihood: -8860.891920
EM: Round [5] log likelihood: -8860.866391
EM: Round [6] log likelihood: -8860.841095
EM: Round [7] log likelihood: -8860.816028
EM: Round [8] log likelihood: -8860.791188
EM: Round [9] log likelihood: -8860.766569
EM: Round [10] log likelihood: -8860.742169
EM: Round [11] log likelihood: -8860.717984
EM: Round [12] log likelihood: -8860.694010
EM: Round [13] log likelihood: -8860.670244
EM: Round [14] log likelihood: -8860.646682
EM: Round [15] log likelihood: -8860.623322
EM: Round [16] log likelihood: -8860.600160
EM: Round [17] log likelihood: -8860.577193
EM: Round [18] log likelihood: -8860.554418
EM: Round [19] log likelihood: -8860.531832
EM: Round [20] log likelihood: -8860.509432
EM: Round [21] log likelihood: -8860.487216
EM: Round [22] log likelihood: -8860.465180
EM: Round [23] log likelihood: -8860.443321
EM: Round [24] log likelihood: -8860.421639
EM: Round [25] log likelihood: -8860.400128
EM: Round [26] log likelihood: -8860.378788
EM: Round [27] log likelihood: -8860.357616
EM: Round [28] log likelihood: -8860.336609
EM: Round [29] log likelihood: -8860.315765
EM: Round [30] log likelihood: -8860.295082
EM: Round [31] log likelihood: -8860.274556
EM: Round [32] log likelihood: -8860.254187
EM: Round [33] log likelihood: -8860.233972
EM: Round [34] log likelihood: -8860.213909
EM: Round [35] log likelihood: -8860.193996
EM: Round [36] log likelihood: -8860.174230
EM: Round [37] log likelihood: -8860.154611
EM: Round [38] log likelihood: -8860.135135
EM: Round [39] log likelihood: -8860.115800
EM: Round [40] log likelihood: -8860.096606
EM: Round [41] log likelihood: -8860.077551
EM: Round [42] log likelihood: -8860.058631
EM: Round [43] log likelihood: -8860.039846
EM: Round [44] log likelihood: -8860.021194
EM: Round [45] log likelihood: -8860.002674
EM: Round [46] log likelihood: -8859.984282
EM: Round [47] log likelihood: -8859.966019
EM: Round [48] log likelihood: -8859.947882
EM: Round [49] log likelihood: -8859.929870
EM: Round [50] log likelihood: -8859.911981
EM: Round [51] log likelihood: -8859.894213
EM: Round [52] log likelihood: -8859.876566
EM: Round [53] log likelihood: -8859.859038
EM: Round [54] log likelihood: -8859.841626
EM: Round [55] log likelihood: -8859.824331
EM: Round [56] log likelihood: -8859.807150
EM: Round [57] log likelihood: -8859.790083
EM: Round [58] log likelihood: -8859.773127
EM: Round [59] log likelihood: -8859.756282
EM: Round [60] log likelihood: -8859.739546
EM: Round [61] log likelihood: -8859.722918
EM: Round [62] log likelihood: -8859.706397
EM: Round [63] log likelihood: -8859.689981
EM: Round [64] log likelihood: -8859.673669
EM: Round [65] log likelihood: -8859.657461
EM: Round [66] log likelihood: -8859.641355
EM: Round [67] log likelihood: -8859.625349
EM: Round [68] log likelihood: -8859.609443
EM: Round [69] log likelihood: -8859.593636
EM: Round [70] log likelihood: -8859.577927
EM: Round [71] log likelihood: -8859.562314
EM: Round [72] log likelihood: -8859.546796
EM: Round [73] log likelihood: -8859.531373
EM: Round [74] log likelihood: -8859.516043
EM: Round [75] log likelihood: -8859.500805
EM: Round [76] log likelihood: -8859.485659
EM: Round [77] log likelihood: -8859.470603
EM: Round [78] log likelihood: -8859.455637
EM: Round [79] log likelihood: -8859.440760
EM: Round [80] log likelihood: -8859.425970
EM: Round [81] log likelihood: -8859.411267
EM: Round [82] log likelihood: -8859.396649
EM: Round [83] log likelihood: -8859.382117
EM: Round [84] log likelihood: -8859.367668
EM: Round [85] log likelihood: -8859.353303
EM: Round [86] log likelihood: -8859.339021
EM: Round [87] log likelihood: -8859.324820
EM: Round [88] log likelihood: -8859.310699
EM: Round [89] log likelihood: -8859.296659
EM: Round [90] log likelihood: -8859.282698
EM: Round [91] log likelihood: -8859.268815
EM: Round [92] log likelihood: -8859.255010
EM: Round [93] log likelihood: -8859.241282
EM: Round [94] log likelihood: -8859.227630
EM: Round [95] log likelihood: -8859.214054
EM: Round [96] log likelihood: -8859.200552
EM: Round [97] log likelihood: -8859.187124
EM: Round [98] log likelihood: -8859.173769
EM: Round [99] log likelihood: -8859.160487
EM: Round [100] log likelihood: -8859.147277
EM: Round [101] log likelihood: -8859.134138
EM: Round [102] log likelihood: -8859.121069
EM: Round [103] log likelihood: -8859.108071
EM: Round [104] log likelihood: -8859.095142
EM: Round [105] log likelihood: -8859.082281
EM: Round [106] log likelihood: -8859.069489
EM: Round [107] log likelihood: -8859.056763
EM: Round [108] log likelihood: -8859.044105
EM: Round [109] log likelihood: -8859.031513
EM: Round [110] log likelihood: -8859.018986
EM: Round [111] log likelihood: -8859.006525
EM: Round [112] log likelihood: -8858.994127
EM: Round [113] log likelihood: -8858.981794
EM: Round [114] log likelihood: -8858.969524
EM: Round [115] log likelihood: -8858.957317
EM: Round [116] log likelihood: -8858.945171
EM: Round [117] log likelihood: -8858.933088
EM: Round [118] log likelihood: -8858.921066
EM: Round [119] log likelihood: -8858.909104
EM: Round [120] log likelihood: -8858.897202
EM: Round [121] log likelihood: -8858.885360
EM: Round [122] log likelihood: -8858.873577
EM: Round [123] log likelihood: -8858.861852
EM: Round [124] log likelihood: -8858.850186
EM: Round [125] log likelihood: -8858.838577
EM: Round [126] log likelihood: -8858.827025
EM: Round [127] log likelihood: -8858.815530
EM: Round [128] log likelihood: -8858.804090
EM: Round [129] log likelihood: -8858.792707
EM: Round [130] log likelihood: -8858.781379
EM: Round [131] log likelihood: -8858.770105
EM: Round [132] log likelihood: -8858.758886
EM: Round [133] log likelihood: -8858.747721
EM: Round [134] log likelihood: -8858.736609
EM: Round [135] log likelihood: -8858.725551
EM: Round [136] log likelihood: -8858.714544
EM: Round [137] log likelihood: -8858.703590
EM: Round [138] log likelihood: -8858.692688
EM: Round [139] log likelihood: -8858.681837
EM: Round [140] log likelihood: -8858.671037
EM: Round [141] log likelihood: -8858.660288
EM: Round [142] log likelihood: -8858.649588
EM: Round [143] log likelihood: -8858.638939
EM: Round [144] log likelihood: -8858.628339
EM: Round [145] log likelihood: -8858.617788
EM: Round [146] log likelihood: -8858.607285
EM: Round [147] log likelihood: -8858.596831
EM: Round [148] log likelihood: -8858.586424
EM: Round [149] log likelihood: -8858.576065
EM: Round [150] log likelihood: -8858.565753
EM: Round [151] log likelihood: -8858.555488
EM: Round [152] log likelihood: -8858.545270
EM: Round [153] log likelihood: -8858.535097
EM: Round [154] log likelihood: -8858.524970
EM: Round [155] log likelihood: -8858.514889
EM: Round [156] log likelihood: -8858.504853
EM: Round [157] log likelihood: -8858.494861
EM: Round [158] log likelihood: -8858.484914
EM: Round [159] log likelihood: -8858.475011
EM: Round [160] log likelihood: -8858.465151
EM: Round [161] log likelihood: -8858.455335
EM: Round [162] log likelihood: -8858.445562
EM: Round [163] log likelihood: -8858.435832
EM: Round [164] log likelihood: -8858.426145
EM: Round [165] log likelihood: -8858.416499
EM: Round [166] log likelihood: -8858.406896
EM: Round [167] log likelihood: -8858.397334
EM: Round [168] log likelihood: -8858.387813
EM: Round [169] log likelihood: -8858.378334
EM: Round [170] log likelihood: -8858.368895
EM: Round [171] log likelihood: -8858.359496
EM: Round [172] log likelihood: -8858.350138
EM: Round [173] log likelihood: -8858.340819
EM: Round [174] log likelihood: -8858.331540
EM: Round [175] log likelihood: -8858.322301
EM: Round [176] log likelihood: -8858.313100
EM: Round [177] log likelihood: -8858.303938
EM: Round [178] log likelihood: -8858.294815
EM: Round [179] log likelihood: -8858.285730
EM: Round [180] log likelihood: -8858.276683
EM: Round [181] log likelihood: -8858.267674
EM: Round [182] log likelihood: -8858.258702
EM: Round [183] log likelihood: -8858.249767
EM: Round [184] log likelihood: -8858.240869
EM: Round [185] log likelihood: -8858.232008
EM: Round [186] log likelihood: -8858.223184
EM: Round [187] log likelihood: -8858.214395
EM: Round [188] log likelihood: -8858.205643
EM: Round [189] log likelihood: -8858.196926
EM: Round [190] log likelihood: -8858.188245
EM: Round [191] log likelihood: -8858.179599
EM: Round [192] log likelihood: -8858.170988
EM: Round [193] log likelihood: -8858.162412
EM: Round [194] log likelihood: -8858.153871
EM: Round [195] log likelihood: -8858.145364
EM: Round [196] log likelihood: -8858.136891
EM: Round [197] log likelihood: -8858.128452
EM: Round [198] log likelihood: -8858.120047
EM: Round [199] log likelihood: -8858.111675
EM: Round [200] log likelihood: -8858.103337
EM: Round [201] log likelihood: -8858.095031
EM: Round [202] log likelihood: -8858.086758
EM: Round [203] log likelihood: -8858.078519
EM: Round [204] log likelihood: -8858.070311
EM: Round [205] log likelihood: -8858.062136
EM: Round [206] log likelihood: -8858.053992
EM: Round [207] log likelihood: -8858.045881
EM: Round [208] log likelihood: -8858.037801
EM: Round [209] log likelihood: -8858.029753
EM: Round [210] log likelihood: -8858.021736
EM: Round [211] log likelihood: -8858.013750
EM: Round [212] log likelihood: -8858.005794
EM: Round [213] log likelihood: -8857.997870
EM: Round [214] log likelihood: -8857.989976
EM: Round [215] log likelihood: -8857.982112
EM: Round [216] log likelihood: -8857.974278
EM: Round [217] log likelihood: -8857.966474
EM: Round [218] log likelihood: -8857.958700
EM: Round [219] log likelihood: -8857.950956
EM: Round [220] log likelihood: -8857.943241
EM: Round [221] log likelihood: -8857.935555
EM: Round [222] log likelihood: -8857.927898
EM: Round [223] log likelihood: -8857.920270
EM: Round [224] log likelihood: -8857.912671
EM: Round [225] log likelihood: -8857.905100
EM: Round [226] log likelihood: -8857.897558
EM: Round [227] log likelihood: -8857.890044
EM: Round [228] log likelihood: -8857.882557
EM: Round [229] log likelihood: -8857.875099
EM: Round [230] log likelihood: -8857.867668
EM: Round [231] log likelihood: -8857.860265
EM: Round [232] log likelihood: -8857.852889
EM: Round [233] log likelihood: -8857.845541
EM: Round [234] log likelihood: -8857.838219
EM: Round [235] log likelihood: -8857.830925
EM: Round [236] log likelihood: -8857.823657
EM: Round [237] log likelihood: -8857.816416
EM: Round [238] log likelihood: -8857.809201
EM: Round [239] log likelihood: -8857.802012
EM: Round [240] log likelihood: -8857.794850
EM: Round [241] log likelihood: -8857.787713
EM: Round [242] log likelihood: -8857.780603
EM: Round [243] log likelihood: -8857.773518
EM: Round [244] log likelihood: -8857.766459
EM: Round [245] log likelihood: -8857.759425
EM: Round [246] log likelihood: -8857.752416
EM: Round [247] log likelihood: -8857.745432
EM: Round [248] log likelihood: -8857.738474
EM: Round [249] log likelihood: -8857.731540
EM: Round [250] log likelihood: -8857.724631
EM: Round [251] log likelihood: -8857.717747
EM: Round [252] log likelihood: -8857.710887
EM: Round [253] log likelihood: -8857.704051
EM: Round [254] log likelihood: -8857.697240
EM: Round [255] log likelihood: -8857.690452
EM: Round [256] log likelihood: -8857.683689
EM: Round [257] log likelihood: -8857.676949
EM: Round [258] log likelihood: -8857.670233
EM: Round [259] log likelihood: -8857.663540
EM: Round [260] log likelihood: -8857.656871
EM: Round [261] log likelihood: -8857.650225
EM: Round [262] log likelihood: -8857.643602
EM: Round [263] log likelihood: -8857.637002
EM: Round [264] log likelihood: -8857.630425
EM: Round [265] log likelihood: -8857.623871
EM: Round [266] log likelihood: -8857.617340
EM: Round [267] log likelihood: -8857.610831
EM: Round [268] log likelihood: -8857.604344
EM: Round [269] log likelihood: -8857.597880
EM: Round [270] log likelihood: -8857.591438
EM: Round [271] log likelihood: -8857.585018
EM: Round [272] log likelihood: -8857.578620
EM: Round [273] log likelihood: -8857.572244
EM: Round [274] log likelihood: -8857.565889
EM: Round [275] log likelihood: -8857.559556
EM: Round [276] log likelihood: -8857.553245
EM: Round [277] log likelihood: -8857.546955
EM: Round [278] log likelihood: -8857.540686
EM: Round [279] log likelihood: -8857.534438
EM: Round [280] log likelihood: -8857.528212
EM: Round [281] log likelihood: -8857.522006
EM: Round [282] log likelihood: -8857.515821
EM: Round [283] log likelihood: -8857.509657
EM: Round [284] log likelihood: -8857.503514
EM: Round [285] log likelihood: -8857.497391
EM: Round [286] log likelihood: -8857.491289
EM: Round [287] log likelihood: -8857.485206
EM: Round [288] log likelihood: -8857.479144
EM: Round [289] log likelihood: -8857.473103
EM: Round [290] log likelihood: -8857.467081
EM: Round [291] log likelihood: -8857.461079
EM: Round [292] log likelihood: -8857.455097
EM: Round [293] log likelihood: -8857.449134
EM: Round [294] log likelihood: -8857.443192
EM: Round [295] log likelihood: -8857.437268
EM: Round [296] log likelihood: -8857.431364
EM: Round [297] log likelihood: -8857.425480
EM: Round [298] log likelihood: -8857.419615
EM: Round [299] log likelihood: -8857.413769
EM: Round [300] log likelihood: -8857.407941
EM: Round [301] log likelihood: -8857.402133
EM: Round [302] log likelihood: -8857.396344
EM: Round [303] log likelihood: -8857.390573
EM: Round [304] log likelihood: -8857.384821
EM: Round [305] log likelihood: -8857.379088
EM: Round [306] log likelihood: -8857.373373
EM: Round [307] log likelihood: -8857.367677
EM: Round [308] log likelihood: -8857.361999
EM: Round [309] log likelihood: -8857.356339
EM: Round [310] log likelihood: -8857.350697
EM: Round [311] log likelihood: -8857.345074
EM: Round [312] log likelihood: -8857.339468
EM: Round [313] log likelihood: -8857.333880
EM: Round [314] log likelihood: -8857.328310
EM: Round [315] log likelihood: -8857.322758
EM: Round [316] log likelihood: -8857.317223
EM: Round [317] log likelihood: -8857.311706
EM: Round [318] log likelihood: -8857.306206
EM: Round [319] log likelihood: -8857.300724
EM: Round [320] log likelihood: -8857.295259
EM: Round [321] log likelihood: -8857.289811
EM: Round [322] log likelihood: -8857.284380
EM: Round [323] log likelihood: -8857.278967
EM: Round [324] log likelihood: -8857.273570
EM: Round [325] log likelihood: -8857.268190
EM: Round [326] log likelihood: -8857.262827
EM: Round [327] log likelihood: -8857.257481
EM: Round [328] log likelihood: -8857.252152
EM: Round [329] log likelihood: -8857.246839
EM: Round [330] log likelihood: -8857.241542
EM: Round [331] log likelihood: -8857.236263
EM: Round [332] log likelihood: -8857.230999
EM: Round [333] log likelihood: -8857.225752
EM: Round [334] log likelihood: -8857.220521
EM: Round [335] log likelihood: -8857.215306
EM: Round [336] log likelihood: -8857.210107
EM: Round [337] log likelihood: -8857.204924
EM: Round [338] log likelihood: -8857.199757
EM: Round [339] log likelihood: -8857.194606
EM: Round [340] log likelihood: -8857.189470
EM: Round [341] log likelihood: -8857.184351
EM: Round [342] log likelihood: -8857.179247
EM: Round [343] log likelihood: -8857.174158
EM: Round [344] log likelihood: -8857.169085
EM: Round [345] log likelihood: -8857.164028
EM: Round [346] log likelihood: -8857.158985
EM: Round [347] log likelihood: -8857.153959
EM: Round [348] log likelihood: -8857.148947
EM: Round [349] log likelihood: -8857.143950
EM: Round [350] log likelihood: -8857.138969
EM: Round [351] log likelihood: -8857.134003
EM: Round [352] log likelihood: -8857.129051
EM: Round [353] log likelihood: -8857.124115
EM: Round [354] log likelihood: -8857.119193
EM: Round [355] log likelihood: -8857.114286
EM: Round [356] log likelihood: -8857.109394
EM: Round [357] log likelihood: -8857.104516
EM: Round [358] log likelihood: -8857.099653
EM: Round [359] log likelihood: -8857.094805
EM: Round [360] log likelihood: -8857.089970
EM: Round [361] log likelihood: -8857.085151
EM: Round [362] log likelihood: -8857.080345
EM: Round [363] log likelihood: -8857.075554
EM: Round [364] log likelihood: -8857.070777
EM: Round [365] log likelihood: -8857.066014
EM: Round [366] log likelihood: -8857.061266
EM: Round [367] log likelihood: -8857.056531
EM: Round [368] log likelihood: -8857.051810
EM: Round [369] log likelihood: -8857.047103
EM: Round [370] log likelihood: -8857.042410
EM: Round [371] log likelihood: -8857.037731
EM: Round [372] log likelihood: -8857.033065
EM: Round [373] log likelihood: -8857.028414
EM: Round [374] log likelihood: -8857.023775
EM: Round [375] log likelihood: -8857.019151
EM: Round [376] log likelihood: -8857.014539
EM: Round [377] log likelihood: -8857.009942
EM: Round [378] log likelihood: -8857.005357
EM: Round [379] log likelihood: -8857.000786
EM: Round [380] log likelihood: -8856.996228
EM: Round [381] log likelihood: -8856.991684
EM: Round [382] log likelihood: -8856.987152
EM: Round [383] log likelihood: -8856.982634
EM: Round [384] log likelihood: -8856.978128
EM: Round [385] log likelihood: -8856.973636
EM: Round [386] log likelihood: -8856.969157
EM: Round [387] log likelihood: -8856.964690
EM: Round [388] log likelihood: -8856.960237
EM: Round [389] log likelihood: -8856.955796
EM: Round [390] log likelihood: -8856.951368
EM: Round [391] log likelihood: -8856.946952
EM: Round [392] log likelihood: -8856.942549
EM: Round [393] log likelihood: -8856.938159
EM: Round [394] log likelihood: -8856.933781
EM: Round [395] log likelihood: -8856.929416
EM: Round [396] log likelihood: -8856.925063
EM: Round [397] log likelihood: -8856.920723
EM: Round [398] log likelihood: -8856.916394
EM: Round [399] log likelihood: -8856.912078
EM: Round [400] log likelihood: -8856.907775
EM: Round [401] log likelihood: -8856.903483
EM: Round [402] log likelihood: -8856.899204
EM: Round [403] log likelihood: -8856.894937
EM: Round [404] log likelihood: -8856.890681
EM: Round [405] log likelihood: -8856.886438
EM: Round [406] log likelihood: -8856.882207
EM: Round [407] log likelihood: -8856.877987
EM: Round [408] log likelihood: -8856.873780
EM: Round [409] log likelihood: -8856.869584
EM: Round [410] log likelihood: -8856.865400
EM: Round [411] log likelihood: -8856.861227
EM: Round [412] log likelihood: -8856.857066
EM: Round [413] log likelihood: -8856.852917
EM: Round [414] log likelihood: -8856.848780
EM: Round [415] log likelihood: -8856.844654
EM: Round [416] log likelihood: -8856.840539
EM: Round [417] log likelihood: -8856.836436
EM: Round [418] log likelihood: -8856.832344
EM: Round [419] log likelihood: -8856.828264
EM: Round [420] log likelihood: -8856.824194
EM: Round [421] log likelihood: -8856.820136
EM: Round [422] log likelihood: -8856.816090
EM: Round [423] log likelihood: -8856.812054
EM: Round [424] log likelihood: -8856.808030
EM: Round [425] log likelihood: -8856.804016
EM: Round [426] log likelihood: -8856.800014
EM: Round [427] log likelihood: -8856.796023
EM: Round [428] log likelihood: -8856.792042
EM: Round [429] log likelihood: -8856.788073
EM: Round [430] log likelihood: -8856.784114
EM: Round [431] log likelihood: -8856.780166
EM: Round [432] log likelihood: -8856.776229
EM: Round [433] log likelihood: -8856.772303
EM: Round [434] log likelihood: -8856.768387
EM: Round [435] log likelihood: -8856.764482
EM: Round [436] log likelihood: -8856.760588
EM: Round [437] log likelihood: -8856.756704
EM: Round [438] log likelihood: -8856.752831
EM: Round [439] log likelihood: -8856.748968
EM: Round [440] log likelihood: -8856.745116
EM: Round [441] log likelihood: -8856.741274
EM: Round [442] log likelihood: -8856.737443
EM: Round [443] log likelihood: -8856.733622
EM: Round [444] log likelihood: -8856.729811
EM: Round [445] log likelihood: -8856.726010
EM: Round [446] log likelihood: -8856.722220
EM: Round [447] log likelihood: -8856.718440
EM: Round [448] log likelihood: -8856.714670
EM: Round [449] log likelihood: -8856.710910
EM: Round [450] log likelihood: -8856.707160
EM: Round [451] log likelihood: -8856.703420
EM: Round [452] log likelihood: -8856.699691
EM: Round [453] log likelihood: -8856.695971
EM: Round [454] log likelihood: -8856.692261
EM: Round [455] log likelihood: -8856.688561
EM: Round [456] log likelihood: -8856.684871
EM: Round [457] log likelihood: -8856.681191
EM: Round [458] log likelihood: -8856.677520
EM: Round [459] log likelihood: -8856.673859
EM: Round [460] log likelihood: -8856.670208
EM: Round [461] log likelihood: -8856.666567
EM: Round [462] log likelihood: -8856.662935
EM: Round [463] log likelihood: -8856.659313
EM: Round [464] log likelihood: -8856.655700
EM: Round [465] log likelihood: -8856.652097
EM: Round [466] log likelihood: -8856.648504
EM: Round [467] log likelihood: -8856.644920
EM: Round [468] log likelihood: -8856.641345
EM: Round [469] log likelihood: -8856.637780
EM: Round [470] log likelihood: -8856.634224
EM: Round [471] log likelihood: -8856.630677
EM: Round [472] log likelihood: -8856.627140
EM: Round [473] log likelihood: -8856.623612
EM: Round [474] log likelihood: -8856.620093
EM: Round [475] log likelihood: -8856.616584
EM: Round [476] log likelihood: -8856.613083
EM: Round [477] log likelihood: -8856.609592
EM: Round [478] log likelihood: -8856.606110
EM: Round [479] log likelihood: -8856.602637
EM: Round [480] log likelihood: -8856.599173
EM: Round [481] log likelihood: -8856.595717
EM: Round [482] log likelihood: -8856.592271
EM: Round [483] log likelihood: -8856.588834
EM: Round [484] log likelihood: -8856.585406
EM: Round [485] log likelihood: -8856.581987
EM: Round [486] log likelihood: -8856.578576
EM: Round [487] log likelihood: -8856.575174
EM: Round [488] log likelihood: -8856.571781
EM: Round [489] log likelihood: -8856.568397
EM: Round [490] log likelihood: -8856.565022
EM: Round [491] log likelihood: -8856.561655
EM: Round [492] log likelihood: -8856.558297
EM: Round [493] log likelihood: -8856.554947
EM: Round [494] log likelihood: -8856.551606
EM: Round [495] log likelihood: -8856.548274
EM: Round [496] log likelihood: -8856.544950
EM: Round [497] log likelihood: -8856.541635
EM: Round [498] log likelihood: -8856.538328
EM: Round [499] log likelihood: -8856.535030
EM: Round [500] log likelihood: -8856.531740
EM: Round [501] log likelihood: -8856.528458
EM: Round [502] log likelihood: -8856.525185
EM: Round [503] log likelihood: -8856.521920
EM: Round [504] log likelihood: -8856.518664
EM: Round [505] log likelihood: -8856.515416
EM: Round [506] log likelihood: -8856.512176
EM: Round [507] log likelihood: -8856.508944
EM: Round [508] log likelihood: -8856.505720
EM: Round [509] log likelihood: -8856.502505
EM: Round [510] log likelihood: -8856.499298
EM: Round [511] log likelihood: -8856.496099
EM: Round [512] log likelihood: -8856.492908
EM: Round [513] log likelihood: -8856.489725
EM: Round [514] log likelihood: -8856.486550
EM: Round [515] log likelihood: -8856.483383
EM: Round [516] log likelihood: -8856.480224
EM: Round [517] log likelihood: -8856.477072
EM: Round [518] log likelihood: -8856.473929
EM: Round [519] log likelihood: -8856.470794
EM: Round [520] log likelihood: -8856.467667
EM: Round [521] log likelihood: -8856.464547
EM: Round [522] log likelihood: -8856.461436
EM: Round [523] log likelihood: -8856.458332
EM: Round [524] log likelihood: -8856.455235
EM: Round [525] log likelihood: -8856.452147
EM: Round [526] log likelihood: -8856.449066
EM: Round [527] log likelihood: -8856.445993
EM: Round [528] log likelihood: -8856.442928
EM: Round [529] log likelihood: -8856.439870
EM: Round [530] log likelihood: -8856.436820
EM: Round [531] log likelihood: -8856.433777
EM: Round [532] log likelihood: -8856.430742
EM: Round [533] log likelihood: -8856.427715
EM: Round [534] log likelihood: -8856.424695
EM: Round [535] log likelihood: -8856.421683
EM: Round [536] log likelihood: -8856.418678
EM: Round [537] log likelihood: -8856.415680
EM: Round [538] log likelihood: -8856.412690
EM: Round [539] log likelihood: -8856.409707
EM: Round [540] log likelihood: -8856.406732
EM: Round [541] log likelihood: -8856.403764
EM: Round [542] log likelihood: -8856.400803
EM: Round [543] log likelihood: -8856.397849
EM: Round [544] log likelihood: -8856.394903
EM: Round [545] log likelihood: -8856.391964
EM: Round [546] log likelihood: -8856.389033
EM: Round [547] log likelihood: -8856.386108
EM: Round [548] log likelihood: -8856.383191
EM: Round [549] log likelihood: -8856.380281
EM: Round [550] log likelihood: -8856.377377
EM: Round [551] log likelihood: -8856.374481
EM: Round [552] log likelihood: -8856.371593
EM: Round [553] log likelihood: -8856.368711
EM: Round [554] log likelihood: -8856.365836
EM: Round [555] log likelihood: -8856.362968
EM: Round [556] log likelihood: -8856.360107
EM: Round [557] log likelihood: -8856.357253
EM: Round [558] log likelihood: -8856.354407
EM: Round [559] log likelihood: -8856.351567
EM: Round [560] log likelihood: -8856.348733
EM: Round [561] log likelihood: -8856.345907
EM: Round [562] log likelihood: -8856.343088
EM: Round [563] log likelihood: -8856.340275
EM: Round [564] log likelihood: -8856.337470
EM: Round [565] log likelihood: -8856.334671
EM: Round [566] log likelihood: -8856.331879
EM: Round [567] log likelihood: -8856.329093
EM: Round [568] log likelihood: -8856.326315
EM: Round [569] log likelihood: -8856.323543
EM: Round [570] log likelihood: -8856.320777
EM: Round [571] log likelihood: -8856.318019
EM: Round [572] log likelihood: -8856.315267
EM: Round [573] log likelihood: -8856.312521
EM: Round [574] log likelihood: -8856.309783
EM: Round [575] log likelihood: -8856.307051
EM: Round [576] log likelihood: -8856.304325
EM: Round [577] log likelihood: -8856.301606
EM: Round [578] log likelihood: -8856.298893
EM: Round [579] log likelihood: -8856.296187
EM: Round [580] log likelihood: -8856.293488
EM: Round [581] log likelihood: -8856.290795
EM: Round [582] log likelihood: -8856.288108
EM: Round [583] log likelihood: -8856.285428
EM: Round [584] log likelihood: -8856.282754
EM: Round [585] log likelihood: -8856.280086
EM: Round [586] log likelihood: -8856.277425
EM: Round [587] log likelihood: -8856.274770
EM: Round [588] log likelihood: -8856.272122
EM: Round [589] log likelihood: -8856.269480
EM: Round [590] log likelihood: -8856.266844
EM: Round [591] log likelihood: -8856.264214
EM: Round [592] log likelihood: -8856.261591
EM: Round [593] log likelihood: -8856.258973
EM: Round [594] log likelihood: -8856.256363
EM: Round [595] log likelihood: -8856.253758
EM: Round [596] log likelihood: -8856.251159
EM: Round [597] log likelihood: -8856.248567
EM: Round [598] log likelihood: -8856.245980
EM: Round [599] log likelihood: -8856.243400
EM: Round [600] log likelihood: -8856.240826
EM: Round [601] log likelihood: -8856.238258
EM: Round [602] log likelihood: -8856.235696
EM: Round [603] log likelihood: -8856.233140
EM: Round [604] log likelihood: -8856.230590
EM: Round [605] log likelihood: -8856.228046
EM: Round [606] log likelihood: -8856.225508
EM: Round [607] log likelihood: -8856.222976
EM: Round [608] log likelihood: -8856.220449
EM: Round [609] log likelihood: -8856.217929
EM: Round [610] log likelihood: -8856.215415
EM: Round [611] log likelihood: -8856.212907
EM: Round [612] log likelihood: -8856.210404
EM: Round [613] log likelihood: -8856.207907
EM: Round [614] log likelihood: -8856.205417
EM: Round [615] log likelihood: -8856.202931
EM: Round [616] log likelihood: -8856.200452
EM: Round [617] log likelihood: -8856.197979
EM: Round [618] log likelihood: -8856.195511
EM: Round [619] log likelihood: -8856.193049
EM: Round [620] log likelihood: -8856.190593
EM: Round [621] log likelihood: -8856.188143
EM: Round [622] log likelihood: -8856.185698
EM: Round [623] log likelihood: -8856.183259
EM: Round [624] log likelihood: -8856.180825
EM: Round [625] log likelihood: -8856.178397
EM: Round [626] log likelihood: -8856.175975
EM: Round [627] log likelihood: -8856.173559
EM: Round [628] log likelihood: -8856.171148
EM: Round [629] log likelihood: -8856.168742
EM: Round [630] log likelihood: -8856.166343
EM: Round [631] log likelihood: -8856.163948
EM: Round [632] log likelihood: -8856.161560
EM: Round [633] log likelihood: -8856.159176
EM: Round [634] log likelihood: -8856.156799
EM: Round [635] log likelihood: -8856.154426
EM: Round [636] log likelihood: -8856.152060
EM: Round [637] log likelihood: -8856.149698
EM: Round [638] log likelihood: -8856.147342
EM: Round [639] log likelihood: -8856.144992
EM: Round [640] log likelihood: -8856.142647
EM: Round [641] log likelihood: -8856.140307
EM: Round [642] log likelihood: -8856.137973
EM: Round [643] log likelihood: -8856.135644
EM: Round [644] log likelihood: -8856.133320
EM: Round [645] log likelihood: -8856.131002
EM: Round [646] log likelihood: -8856.128689
EM: Round [647] log likelihood: -8856.126381
EM: Round [648] log likelihood: -8856.124079
EM: Round [649] log likelihood: -8856.121782
EM: Round [650] log likelihood: -8856.119490
EM: Round [651] log likelihood: -8856.117203
EM: Round [652] log likelihood: -8856.114922
EM: Round [653] log likelihood: -8856.112645
EM: Round [654] log likelihood: -8856.110374
EM: Round [655] log likelihood: -8856.108108
EM: Round [656] log likelihood: -8856.105847
EM: Round [657] log likelihood: -8856.103592
EM: Round [658] log likelihood: -8856.101341
EM: Round [659] log likelihood: -8856.099096
EM: Round [660] log likelihood: -8856.096856
EM: Round [661] log likelihood: -8856.094621
EM: Round [662] log likelihood: -8856.092390
EM: Round [663] log likelihood: -8856.090165
EM: Round [664] log likelihood: -8856.087945
EM: Round [665] log likelihood: -8856.085730
EM: Round [666] log likelihood: -8856.083520
EM: Round [667] log likelihood: -8856.081315
EM: Round [668] log likelihood: -8856.079115
EM: Round [669] log likelihood: -8856.076920
EM: Round [670] log likelihood: -8856.074730
EM: Round [671] log likelihood: -8856.072545
EM: Round [672] log likelihood: -8856.070365
EM: Round [673] log likelihood: -8856.068189
EM: Round [674] log likelihood: -8856.066019
EM: Round [675] log likelihood: -8856.063853
EM: Round [676] log likelihood: -8856.061693
EM: Round [677] log likelihood: -8856.059537
EM: Round [678] log likelihood: -8856.057386
EM: Round [679] log likelihood: -8856.055240
EM: Round [680] log likelihood: -8856.053098
EM: Round [681] log likelihood: -8856.050962
EM: Round [682] log likelihood: -8856.048830
EM: Round [683] log likelihood: -8856.046703
EM: Round [684] log likelihood: -8856.044581
EM: Round [685] log likelihood: -8856.042463
EM: Round [686] log likelihood: -8856.040351
EM: Round [687] log likelihood: -8856.038243
EM: Round [688] log likelihood: -8856.036139
EM: Round [689] log likelihood: -8856.034041
EM: Round [690] log likelihood: -8856.031947
EM: Round [691] log likelihood: -8856.029857
EM: Round [692] log likelihood: -8856.027773
EM: Round [693] log likelihood: -8856.025693
EM: Round [694] log likelihood: -8856.023617
EM: Round [695] log likelihood: -8856.021547
EM: Round [696] log likelihood: -8856.019481
EM: Round [697] log likelihood: -8856.017419
EM: Round [698] log likelihood: -8856.015362
EM: Round [699] log likelihood: -8856.013310
EM: Round [700] log likelihood: -8856.011262
EM: Round [701] log likelihood: -8856.009219
EM: Round [702] log likelihood: -8856.007180
EM: Round [703] log likelihood: -8856.005146
EM: Round [704] log likelihood: -8856.003116
EM: Round [705] log likelihood: -8856.001091
EM: Round [706] log likelihood: -8855.999070
EM: Round [707] log likelihood: -8855.997054
EM: Round [708] log likelihood: -8855.995042
EM: Round [709] log likelihood: -8855.993034
EM: Round [710] log likelihood: -8855.991031
EM: Round [711] log likelihood: -8855.989033
EM: Round [712] log likelihood: -8855.987039
EM: Round [713] log likelihood: -8855.985049
EM: Round [714] log likelihood: -8855.983063
EM: Round [715] log likelihood: -8855.981082
EM: Round [716] log likelihood: -8855.979106
EM: Round [717] log likelihood: -8855.977133
EM: Round [718] log likelihood: -8855.975165
EM: Round [719] log likelihood: -8855.973202
EM: Round [720] log likelihood: -8855.971242
EM: Round [721] log likelihood: -8855.969287
EM: Round [722] log likelihood: -8855.967337
EM: Round [723] log likelihood: -8855.965390
EM: Round [724] log likelihood: -8855.963448
EM: Round [725] log likelihood: -8855.961510
EM: Round [726] log likelihood: -8855.959576
EM: Round [727] log likelihood: -8855.957647
EM: Round [728] log likelihood: -8855.955721
EM: Round [729] log likelihood: -8855.953800
EM: Round [730] log likelihood: -8855.951883
EM: Round [731] log likelihood: -8855.949971
EM: Round [732] log likelihood: -8855.948062
EM: Round [733] log likelihood: -8855.946158
EM: Round [734] log likelihood: -8855.944257
EM: Round [735] log likelihood: -8855.942361
EM: Round [736] log likelihood: -8855.940469
EM: Round [737] log likelihood: -8855.938582
EM: Round [738] log likelihood: -8855.936698
EM: Round [739] log likelihood: -8855.934818
EM: Round [740] log likelihood: -8855.932943
EM: Round [741] log likelihood: -8855.931071
EM: Round [742] log likelihood: -8855.929204
EM: Round [743] log likelihood: -8855.927340
EM: Round [744] log likelihood: -8855.925481
EM: Round [745] log likelihood: -8855.923626
EM: Round [746] log likelihood: -8855.921774
EM: Round [747] log likelihood: -8855.919927
EM: Round [748] log likelihood: -8855.918084
EM: Round [749] log likelihood: -8855.916244
EM: Round [750] log likelihood: -8855.914409
EM: Round [751] log likelihood: -8855.912578
EM: Round [752] log likelihood: -8855.910750
EM: Round [753] log likelihood: -8855.908927
EM: Round [754] log likelihood: -8855.907107
EM: Round [755] log likelihood: -8855.905292
EM: Round [756] log likelihood: -8855.903480
EM: Round [757] log likelihood: -8855.901672
EM: Round [758] log likelihood: -8855.899868
EM: Round [759] log likelihood: -8855.898068
EM: Round [760] log likelihood: -8855.896272
EM: Round [761] log likelihood: -8855.894480
EM: Round [762] log likelihood: -8855.892692
EM: Round [763] log likelihood: -8855.890907
EM: Round [764] log likelihood: -8855.889126
EM: Round [765] log likelihood: -8855.887349
EM: Round [766] log likelihood: -8855.885576
EM: Round [767] log likelihood: -8855.883807
EM: Round [768] log likelihood: -8855.882041
EM: Round [769] log likelihood: -8855.880280
EM: Round [770] log likelihood: -8855.878522
EM: Round [771] log likelihood: -8855.876767
EM: Round [772] log likelihood: -8855.875017
EM: Round [773] log likelihood: -8855.873270
EM: Round [774] log likelihood: -8855.871527
EM: Round [775] log likelihood: -8855.869788
EM: Round [776] log likelihood: -8855.868052
EM: Round [777] log likelihood: -8855.866321
EM: Round [778] log likelihood: -8855.864592
EM: Round [779] log likelihood: -8855.862868
EM: Round [780] log likelihood: -8855.861147
EM: Round [781] log likelihood: -8855.859430
EM: Round [782] log likelihood: -8855.857717
EM: Round [783] log likelihood: -8855.856007
EM: Round [784] log likelihood: -8855.854301
EM: Round [785] log likelihood: -8855.852598
EM: Round [786] log likelihood: -8855.850899
EM: Round [787] log likelihood: -8855.849204
EM: Round [788] log likelihood: -8855.847512
EM: Round [789] log likelihood: -8855.845824
EM: Round [790] log likelihood: -8855.844139
EM: Round [791] log likelihood: -8855.842458
EM: Round [792] log likelihood: -8855.840781
EM: Round [793] log likelihood: -8855.839107
EM: Round [794] log likelihood: -8855.837437
EM: Round [795] log likelihood: -8855.835770
EM: Round [796] log likelihood: -8855.834107
EM: Round [797] log likelihood: -8855.832447
EM: Round [798] log likelihood: -8855.830791
EM: Round [799] log likelihood: -8855.829138
EM: Round [800] log likelihood: -8855.827489
EM: Round [801] log likelihood: -8855.825843
EM: Round [802] log likelihood: -8855.824201
EM: Round [803] log likelihood: -8855.822562
EM: Round [804] log likelihood: -8855.820927
EM: Round [805] log likelihood: -8855.819295
EM: Round [806] log likelihood: -8855.817666
EM: Round [807] log likelihood: -8855.816041
EM: Round [808] log likelihood: -8855.814419
EM: Round [809] log likelihood: -8855.812801
EM: Round [810] log likelihood: -8855.811186
EM: Round [811] log likelihood: -8855.809575
EM: Round [812] log likelihood: -8855.807967
EM: Round [813] log likelihood: -8855.806362
EM: Round [814] log likelihood: -8855.804761
EM: Round [815] log likelihood: -8855.803163
EM: Round [816] log likelihood: -8855.801568
EM: Round [817] log likelihood: -8855.799977
EM: Round [818] log likelihood: -8855.798389
EM: Round [819] log likelihood: -8855.796805
EM: Round [820] log likelihood: -8855.795223
EM: Round [821] log likelihood: -8855.793646
EM: Round [822] log likelihood: -8855.792071
EM: Round [823] log likelihood: -8855.790500
EM: Round [824] log likelihood: -8855.788931
EM: Round [825] log likelihood: -8855.787367
EM: Round [826] log likelihood: -8855.785805
EM: Round [827] log likelihood: -8855.784247
EM: Round [828] log likelihood: -8855.782692
EM: Round [829] log likelihood: -8855.781140
EM: Round [830] log likelihood: -8855.779592
EM: Round [831] log likelihood: -8855.778046
EM: Round [832] log likelihood: -8855.776504
EM: Round [833] log likelihood: -8855.774965
EM: Round [834] log likelihood: -8855.773430
EM: Round [835] log likelihood: -8855.771897
EM: Round [836] log likelihood: -8855.770368
EM: Round [837] log likelihood: -8855.768842
EM: Round [838] log likelihood: -8855.767319
EM: Round [839] log likelihood: -8855.765799
EM: Round [840] log likelihood: -8855.764282
EM: Round [841] log likelihood: -8855.762769
EM: Round [842] log likelihood: -8855.761259
EM: Round [843] log likelihood: -8855.759751
EM: Round [844] log likelihood: -8855.758247
EM: Round [845] log likelihood: -8855.756746
EM: Round [846] log likelihood: -8855.755249
EM: Round [847] log likelihood: -8855.753754
EM: Round [848] log likelihood: -8855.752262
EM: Round [849] log likelihood: -8855.750774
EM: Round [850] log likelihood: -8855.749288
EM: Round [851] log likelihood: -8855.747806
EM: Round [852] log likelihood: -8855.746326
EM: Round [853] log likelihood: -8855.744850
EM: Round [854] log likelihood: -8855.743377
EM: Round [855] log likelihood: -8855.741907
EM: Round [856] log likelihood: -8855.740440
EM: Round [857] log likelihood: -8855.738975
EM: Round [858] log likelihood: -8855.737514
EM: Round [859] log likelihood: -8855.736056
EM: Round [860] log likelihood: -8855.734601
EM: Round [861] log likelihood: -8855.733149
EM: Round [862] log likelihood: -8855.731700
EM: Round [863] log likelihood: -8855.730254
EM: Round [864] log likelihood: -8855.728811
EM: Round [865] log likelihood: -8855.727371
EM: Round [866] log likelihood: -8855.725933
EM: Round [867] log likelihood: -8855.724499
EM: Round [868] log likelihood: -8855.723068
EM: Round [869] log likelihood: -8855.721639
EM: Round [870] log likelihood: -8855.720214
EM: Round [871] log likelihood: -8855.718791
EM: Round [872] log likelihood: -8855.717372
EM: Round [873] log likelihood: -8855.715955
EM: Round [874] log likelihood: -8855.714541
EM: Round [875] log likelihood: -8855.713130
EM: Round [876] log likelihood: -8855.711722
EM: Round [877] log likelihood: -8855.710317
EM: Round [878] log likelihood: -8855.708915
EM: Round [879] log likelihood: -8855.707516
EM: Round [880] log likelihood: -8855.706119
EM: Round [881] log likelihood: -8855.704725
EM: Round [882] log likelihood: -8855.703335
EM: Round [883] log likelihood: -8855.701947
EM: Round [884] log likelihood: -8855.700561
EM: Round [885] log likelihood: -8855.699179
EM: Round [886] log likelihood: -8855.697800
EM: Round [887] log likelihood: -8855.696423
EM: Round [888] log likelihood: -8855.695049
EM: Round [889] log likelihood: -8855.693678
EM: Round [890] log likelihood: -8855.692310
EM: Round [891] log likelihood: -8855.690944
EM: Round [892] log likelihood: -8855.689582
EM: Round [893] log likelihood: -8855.688222
EM: Round [894] log likelihood: -8855.686864
EM: Round [895] log likelihood: -8855.685510
EM: Round [896] log likelihood: -8855.684158
EM: Round [897] log likelihood: -8855.682809
EM: Round [898] log likelihood: -8855.681463
EM: Round [899] log likelihood: -8855.680120
EM: Round [900] log likelihood: -8855.678779
EM: Round [901] log likelihood: -8855.677441
EM: Round [902] log likelihood: -8855.676106
EM: Round [903] log likelihood: -8855.674773
EM: Round [904] log likelihood: -8855.673444
EM: Round [905] log likelihood: -8855.672116
EM: Round [906] log likelihood: -8855.670792
EM: Round [907] log likelihood: -8855.669470
EM: Round [908] log likelihood: -8855.668151
EM: Round [909] log likelihood: -8855.666835
EM: Round [910] log likelihood: -8855.665521
EM: Round [911] log likelihood: -8855.664210
EM: Round [912] log likelihood: -8855.662901
EM: Round [913] log likelihood: -8855.661595
EM: Round [914] log likelihood: -8855.660292
EM: Round [915] log likelihood: -8855.658992
EM: Round [916] log likelihood: -8855.657694
EM: Round [917] log likelihood: -8855.656398
EM: Round [918] log likelihood: -8855.655106
EM: Round [919] log likelihood: -8855.653815
EM: Round [920] log likelihood: -8855.652528
EM: Round [921] log likelihood: -8855.651243
EM: Round [922] log likelihood: -8855.649961
EM: Round [923] log likelihood: -8855.648681
EM: Round [924] log likelihood: -8855.647404
EM: Round [925] log likelihood: -8855.646129
EM: Round [926] log likelihood: -8855.644857
EM: Round [927] log likelihood: -8855.643588
EM: Round [928] log likelihood: -8855.642321
EM: Round [929] log likelihood: -8855.641057
EM: Round [930] log likelihood: -8855.639795
EM: Round [931] log likelihood: -8855.638535
EM: Round [932] log likelihood: -8855.637279
EM: Round [933] log likelihood: -8855.636024
EM: Round [934] log likelihood: -8855.634773
EM: Round [935] log likelihood: -8855.633524
EM: Round [936] log likelihood: -8855.632277
EM: Round [937] log likelihood: -8855.631033
EM: Round [938] log likelihood: -8855.629791
EM: Round [939] log likelihood: -8855.628552
EM: Round [940] log likelihood: -8855.627315
EM: Round [941] log likelihood: -8855.626081
EM: Round [942] log likelihood: -8855.624849
EM: Round [943] log likelihood: -8855.623620
EM: Round [944] log likelihood: -8855.622393
EM: Round [945] log likelihood: -8855.621168
EM: Round [946] log likelihood: -8855.619946
EM: Round [947] log likelihood: -8855.618727
EM: Round [948] log likelihood: -8855.617510
EM: Round [949] log likelihood: -8855.616295
EM: Round [950] log likelihood: -8855.615083
EM: Round [951] log likelihood: -8855.613873
EM: Round [952] log likelihood: -8855.612666
EM: Round [953] log likelihood: -8855.611461
EM: Round [954] log likelihood: -8855.610258
EM: Round [955] log likelihood: -8855.609058
EM: Round [956] log likelihood: -8855.607860
EM: Round [957] log likelihood: -8855.606665
EM: Round [958] log likelihood: -8855.605472
EM: Round [959] log likelihood: -8855.604281
EM: Round [960] log likelihood: -8855.603093
EM: Round [961] log likelihood: -8855.601907
EM: Round [962] log likelihood: -8855.600723
EM: Round [963] log likelihood: -8855.599542
EM: Round [964] log likelihood: -8855.598363
EM: Round [965] log likelihood: -8855.597187
EM: Round [966] log likelihood: -8855.596012
EM: Round [967] log likelihood: -8855.594840
EM: Round [968] log likelihood: -8855.593671
EM: Round [969] log likelihood: -8855.592504
EM: Round [970] log likelihood: -8855.591339
EM: Round [971] log likelihood: -8855.590176
EM: Round [972] log likelihood: -8855.589016
EM: Round [973] log likelihood: -8855.587858
EM: Round [974] log likelihood: -8855.586702
EM: Round [975] log likelihood: -8855.585549
EM: Round [976] log likelihood: -8855.584398
EM: Round [977] log likelihood: -8855.583249
EM: Round [978] log likelihood: -8855.582102
EM: Round [979] log likelihood: -8855.580958
EM: Round [980] log likelihood: -8855.579816
EM: Round [981] log likelihood: -8855.578676
EM: Round [982] log likelihood: -8855.577539
EM: Round [983] log likelihood: -8855.576404
EM: Round [984] log likelihood: -8855.575271
EM: Round [985] log likelihood: -8855.574140
EM: Round [986] log likelihood: -8855.573011
EM: Round [987] log likelihood: -8855.571885
EM: Round [988] log likelihood: -8855.570761
EM: Round [989] log likelihood: -8855.569639
EM: Round [990] log likelihood: -8855.568519
EM: Round [991] log likelihood: -8855.567402
EM: Round [992] log likelihood: -8855.566286
EM: Round [993] log likelihood: -8855.565173
EM: Round [994] log likelihood: -8855.564062
EM: Round [995] log likelihood: -8855.562954
EM: Round [996] log likelihood: -8855.561847
EM: Round [997] log likelihood: -8855.560743
EM: Round [998] log likelihood: -8855.559641
EM: Round [999] log likelihood: -8855.558541
EM: Round [1000] log likelihood: -8855.557443
EM: Round [1001] log likelihood: -8855.556347
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_1.fastp.fastq.gz /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_1.fastp.fastq.gz: 294873575
Execution Time = 5.83 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2_1.fastp.fastq.gz /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa --gtf /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf > /tmp/nxf.MwmX46TKLS/fi_workdir/microH.dat
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fa --gtf /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gtf > /tmp/nxf.MwmX46TKLS/fi_workdir/microH.dat
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.MwmX46TKLS/fi_workdir/microH.dat /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.MwmX46TKLS/fi_workdir/microH.dat /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.MwmX46TKLS --json_outfile /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_inspector_web.json --file_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_2
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.MwmX46TKLS --json_outfile /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_inspector_web.json --file_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_2
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_inspector_web.json --input_file_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_2 --html_output /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_inspector_web.json --input_file_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_2 --html_output /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.fusion_inspector_web.html
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv.annotated
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv.annotated
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000285169.2]
WARNING, no entry stored in dbm for [ENSG00000285169.2]
WARNING, no entry stored in dbm for [ENSG00000198237.8]
WARNING, no entry stored in dbm for [ENSG00000198237.8]
WARNING, no entry stored in dbm for [ENSG00000198237.8]
WARNING, no entry stored in dbm for [ENSG00000198237.8]
WARNING, no entry stored in dbm for [ENSG00000198237.8]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000236373.2]
WARNING, no entry stored in dbm for [ENSG00000236373.2]
WARNING, no entry stored in dbm for [ENSG00000236373.2]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.MwmX46TKLS/ctat_genome_lib_build_dir > /tmp/nxf.MwmX46TKLS/786-O_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
Running: touch /tmp/nxf.MwmX46TKLS/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory