Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/420c2a0cf5b37bcf5a661b99b51025/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/993d7220d8446b61d7f0e428187633/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/420c2a0cf5b37bcf5a661b99b51025/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory