Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/31d02d9f7f65876816f5db033787b5/MCF7_FFPE_RNA_0001_B23LG7FLT4_3.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/e27516fdf68ed77594fef103b1bc1b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/e27516fdf68ed77594fef103b1bc1b/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory