[W::hts_idx_load3] The index file is older than the data file: A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

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Total splicing  Events:	306433525
Known Splicing Events:	304029670
Partial Novel Splicing Events:	1622446
Novel Splicing Events:	694306
Filtered Splicing Events:	87103

Total splicing  Junctions:	599663
Known Splicing Junctions:	277258
Partial Novel Splicing Junctions:	179214
Novel Splicing Junctions:	143191

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Create BED file ...
Create Interact file ...