Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/d61da7a20465a6fa1e51a40070dea9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/993d7220d8446b61d7f0e428187633/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/d61da7a20465a6fa1e51a40070dea9/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291786578
unpaired = 4868089
MERGED PAIRED END READS = 291786578
MATES PROCESSED = 588441245
TOTAL READS     = 296654667
DISTINCT READS  = 1.60855e+08
DISTINCT COUNTS = 816
MAX COUNT       = 1034012
COUNTS OF 1     = 1.0348e+08
MAX TERMS       = 100
OBSERVED COUNTS (1034013)
1	103479727
2	32413971
3	11930356
4	5179641
5	2609562
6	1480783
7	924965
8	618174
9	435153
10	318032
11	240228
12	185031
13	146926
14	117551
15	96070
16	79921
17	66361
18	56095
19	48185
20	41193
21	35554
22	30908
23	27040
24	23728
25	20965
26	18643
27	16943
28	15023
29	13674
30	12069
31	11026
32	10238
33	9159
34	8192
35	7699
36	7105
37	6506
38	5993
39	5554
40	5221
41	4795
42	4414
43	4038
44	3855
45	3605
46	3317
47	3152
48	2903
49	2728
50	2583
51	2415
52	2337
53	2199
54	2058
55	2003
56	1884
57	1702
58	1598
59	1585
60	1558
61	1462
62	1349
63	1306
64	1247
65	1167
66	1066
67	1060
68	992
69	960
70	929
71	902
72	836
73	807
74	814
75	751
76	760
77	657
78	643
79	623
80	598
81	579
82	542
83	557
84	522
85	545
86	499
87	465
88	471
89	429
90	405
91	393
92	415
93	371
94	351
95	346
96	342
97	335
98	320
99	316
100	316
101	289
102	292
103	271
104	278
105	251
106	288
107	239
108	238
109	242
110	235
111	210
112	194
113	218
114	211
115	188
116	174
117	191
118	175
119	188
120	172
121	161
122	154
123	154
124	151
125	144
126	134
127	147
128	117
129	137
130	151
131	129
132	142
133	119
134	126
135	99
136	113
137	93
138	109
139	100
140	101
141	97
142	89
143	95
144	96
145	90
146	85
147	98
148	84
149	68
150	90
151	78
152	81
153	90
154	90
155	63
156	72
157	82
158	68
159	84
160	86
161	61
162	71
163	79
164	72
165	56
166	50
167	57
168	54
169	56
170	60
171	48
172	49
173	56
174	58
175	58
176	60
177	62
178	50
179	45
180	52
181	42
182	37
183	45
184	49
185	46
186	36
187	40
188	49
189	40
190	35
191	40
192	51
193	44
194	35
195	42
196	35
197	45
198	27
199	38
200	38
201	21
202	38
203	35
204	29
205	24
206	30
207	28
208	26
209	36
210	31
211	23
212	30
213	30
214	24
215	26
216	29
217	16
218	21
219	32
220	25
221	25
222	25
223	22
224	25
225	26
226	23
227	24
228	20
229	24
230	21
231	16
232	16
233	24
234	17
235	24
236	28
237	22
238	24
239	16
240	26
241	13
242	14
243	11
244	18
245	16
246	20
247	18
248	26
249	24
250	20
251	16
252	18
253	25
254	19
255	15
256	16
257	18
258	13
259	18
260	18
261	13
262	12
263	9
264	17
265	13
266	11
267	15
268	15
269	18
270	17
271	16
272	7
273	8
274	12
275	9
276	17
277	14
278	9
279	15
280	15
281	13
282	7
283	15
284	13
285	5
286	15
287	12
288	12
289	13
290	12
291	11
292	8
293	5
294	4
295	15
296	9
297	13
298	16
299	6
300	8
301	7
302	21
303	6
304	8
305	10
306	7
307	8
308	8
309	5
310	6
311	4
312	9
313	12
314	10
315	7
316	12
317	8
318	7
319	7
320	11
321	5
322	6
323	11
324	5
325	12
326	11
327	5
328	9
329	6
330	7
331	12
332	6
333	3
334	5
335	8
336	5
337	3
338	7
339	9
340	2
341	5
342	4
343	3
344	6
345	3
346	5
347	2
348	5
349	4
350	4
351	10
352	4
353	5
354	9
355	9
356	6
357	7
358	5
359	6
360	7
361	5
362	9
363	4
364	5
365	5
366	1
367	2
368	6
369	3
370	3
371	5
372	4
373	6
374	4
375	4
376	2
377	5
378	3
379	5
380	6
381	3
382	2
383	2
384	6
385	4
386	2
387	7
388	5
389	2
390	3
391	3
392	6
393	4
394	4
395	6
396	2
397	4
398	4
399	2
400	4
401	5
402	4
403	6
404	4
405	2
407	6
408	5
409	2
410	7
411	3
412	4
413	6
414	5
415	2
416	6
417	3
418	3
419	5
420	6
421	7
423	5
424	2
425	1
426	2
427	2
428	6
429	1
430	2
431	5
432	1
434	3
435	3
436	2
438	1
439	2
440	1
441	2
442	4
443	2
444	4
445	3
446	1
447	1
448	1
449	1
450	2
451	1
452	3
454	5
455	2
456	5
457	2
458	3
459	2
460	2
461	2
462	5
463	2
465	3
467	5
468	2
469	1
470	1
471	1
472	2
473	7
474	3
475	1
476	3
477	1
478	2
479	2
480	3
481	2
482	3
484	2
487	1
488	1
489	2
490	1
491	2
492	2
493	2
494	5
495	1
496	1
497	5
499	1
500	1
501	2
502	4
504	1
506	3
507	2
509	2
510	2
512	1
513	1
519	1
520	1
521	3
524	3
525	1
526	1
527	1
528	1
529	2
530	2
531	1
532	1
533	3
534	1
535	1
538	1
539	2
541	1
543	2
544	2
546	2
547	1
548	3
549	2
550	1
551	3
552	2
553	1
554	3
555	1
556	3
557	2
558	1
559	2
560	2
561	1
562	1
563	2
564	2
565	2
566	3
568	2
569	2
570	2
571	1
572	1
573	1
575	2
579	2
580	2
582	2
583	2
584	1
587	1
588	3
589	1
590	1
592	3
593	2
594	2
595	1
597	1
599	1
600	1
603	2
604	2
605	1
606	1
608	1
609	2
611	1
612	1
614	1
616	1
617	3
618	2
619	2
620	1
621	2
622	2
623	1
625	1
626	1
631	2
634	1
635	1
636	2
637	1
640	1
641	1
642	1
643	1
644	1
645	1
646	1
647	1
650	2
651	1
652	2
654	1
655	2
657	1
658	1
661	1
662	1
664	1
665	2
666	1
667	1
668	1
673	2
675	1
676	1
679	2
682	1
683	1
684	1
685	1
692	1
697	1
698	1
699	2
700	1
701	1
707	1
708	1
710	1
714	1
715	2
716	1
717	1
718	1
722	1
723	1
725	4
727	1
728	1
729	1
732	2
735	1
737	1
739	4
740	2
743	2
752	2
756	1
757	1
758	2
760	1
763	1
771	1
772	1
777	2
783	2
785	1
794	1
802	1
809	1
818	1
820	1
825	1
826	1
831	2
833	1
837	1
838	1
841	1
843	1
847	1
849	1
850	1
851	1
861	1
862	2
864	1
872	1
876	2
880	1
881	1
886	3
894	1
898	2
900	1
901	2
909	2
912	2
913	1
914	1
918	1
919	1
929	1
941	1
949	1
950	1
952	2
954	1
957	1
966	1
968	1
969	1
986	1
999	1
1003	1
1009	1
1013	1
1019	1
1020	1
1024	1
1026	1
1027	1
1047	1
1050	1
1053	1
1056	1
1081	1
1090	1
1091	1
1110	1
1128	1
1152	1
1161	1
1170	1
1176	1
1187	1
1191	1
1194	1
1210	2
1213	2
1219	1
1224	1
1228	1
1229	1
1253	1
1262	1
1271	1
1274	1
1282	1
1312	1
1343	1
1385	1
1432	1
1459	1
1464	1
1503	1
1506	1
1522	2
1523	1
1532	1
1539	1
1651	1
1660	1
1690	1
1694	1
1701	1
1715	1
1723	1
1749	1
1757	1
1776	1
1786	1
1809	1
1831	1
1842	1
1843	1
1846	1
1858	1
1885	1
1900	1
1909	1
1910	1
1921	1
1924	1
1945	1
1955	1
1959	1
1985	1
1993	1
2045	1
2049	1
2068	1
2092	1
2105	1
2126	1
2131	1
2133	1
2155	1
2172	1
2176	1
2190	1
2196	1
2201	1
2209	1
2243	1
2368	1
2381	1
2553	1
2606	1
2640	1
2729	1
2797	1
2834	1
2941	1
2958	1
3078	1
3102	1
3340	1
3361	1
3370	1
3546	1
3657	1
5251	1
5692	1
6197	1
11700	1
12200	1
12713	1
40055	1
1034012	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...__..____.....__._._._.....__.._...._...._...._._..._._.....__.___..._
._.._.......__...............__............__....__.__.._...__._..._.._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]