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AI-generated troubleshooting analysis is available in the AI Analysis tab.
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume 94fbd738-f9c0-42b6-b51c-daadc6f9f9a3 -name dev_rna_exp0011-2cae617
Error Report
Error executing process > 'NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTP (FFPE_HD789_01_RNA_0004_B23LG7FLT4_1)'
Caused by:
K8s pod 'nf-6e0072c2ff5d89bc1c5674f0f7b89836-5cd50-sqg79' execution failed - reason: Evicted - message: Pod ephemeral local storage usage exceeds the total limit of containers 300Gi.
Command executed:
[ ! -f FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_1.fastq.gz ] && ln -sf FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_R1.fastq.gz FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_1.fastq.gz
[ ! -f FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_2.fastq.gz ] && ln -sf FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_R2.fastq.gz FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_2.fastq.gz
fastp \
--in1 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_1.fastq.gz \
--in2 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_2.fastq.gz \
--out1 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_1.fastp.fastq.gz \
--out2 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1_2.fastp.fastq.gz \
--json FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.fastp.json \
--html FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.fastp.html \
\
\
\
--thread 12 \
--detect_adapter_for_pe \
--reads_to_process 300000000 \
2> FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.fastp.log
cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTP":
fastp: $(fastp --version 2>&1 | sed -e "s/fastp //g")
END_VERSIONS
Command exit status:
-
Command output:
(empty)
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/0072c2ff5d89bc1c5674f0f7b89836
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/fastp:0.23.4--h5f740d0_0
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- 94fbd738-f9c0-42b6-b51c-daadc6f9f9a3
- Source
- /code/main.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Submitted By
- anaik
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $47.48
- Outputs
- 671.0 GB
- Started
- May 16, 2026 12:09 AM
- Completed
- May 16, 2026 1:55 AM
- Duration
- 1h 45m
- Post-workflow Transfer
- 5s
- Exit Status
- -
- Peak Tasks / CPU / Mem
- 254 / 1,697 / 4.0 TB