File Info

Filename
NTC_0001_0001_B23LG7FLT4_2.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/star_for_arriba/NTC_0001_0001_B23LG7FLT4_2.Log.final.out
Size
2.0 KB
Published
Mar 03, 2026 2:02 PM
                                 Started job on |	Mar 03 21:59:08
                             Started mapping on |	Mar 03 22:00:44
                                    Finished on |	Mar 03 22:02:05
       Mapping speed, Million of reads per hour |	50.99

                          Number of input reads |	1147200
                      Average input read length |	297
                                    UNIQUE READS:
                   Uniquely mapped reads number |	3440
                        Uniquely mapped reads % |	0.30%
                          Average mapped length |	168.35
                       Number of splices: Total |	356
            Number of splices: Annotated (sjdb) |	269
                       Number of splices: GT/AG |	312
                       Number of splices: GC/AG |	16
                       Number of splices: AT/AC |	0
               Number of splices: Non-canonical |	28
                      Mismatch rate per base, % |	1.03%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	0.00
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8181
             % of reads mapped to multiple loci |	0.71%
        Number of reads mapped to too many loci |	8
             % of reads mapped to too many loci |	0.00%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	105
       % of reads unmapped: too many mismatches |	0.01%
            Number of reads unmapped: too short |	1116152
                 % of reads unmapped: too short |	97.29%
                Number of reads unmapped: other |	16903
                     % of reads unmapped: other |	1.47%
                                  CHIMERIC READS:
                       Number of chimeric reads |	4406
                            % of chimeric reads |	0.38%