#gene1	gene2	strand1(gene/fusion)	strand2(gene/fusion)	breakpoint1	breakpoint2	site1	site2	type	split_reads1	split_reads2	discordant_mates	coverage1	coverage2	confidence	reading_frame	tags	retained_protein_domains	closest_genomic_breakpoint1	closest_genomic_breakpoint2	gene_id1	gene_id2	transcript_id1	transcript_id2	direction1	direction2	filters	fusion_transcript	peptide_sequence	read_identifiers
KIF26B	COL20A1	+/+	+/+	1:245684307	20:63320137	CDS	CDS	translocation	0	0	0	0	4	low	.	.	Kinesin_motor_domain(93%)|Collagen_triple_helix_repeat_(20_copies)(100%)	.	.	ENSG00000162849	ENSG00000101203	.	.	downstream	upstream	mismatches(1)	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(909),IGHV4-39(2503)	./.	./.	14:106419121	14:106419208	intergenic	intergenic	duplication/ITD	0	0	0	192	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(901),IGHV4-39(2511)	./.	./.	14:106419121	14:106419200	intergenic	intergenic	duplication/ITD	0	0	0	192	192	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
ACLY	TDRD12	-/.	+/.	17:41904756	19:32824139	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131473	ENSG00000173809	.	.	downstream	downstream	mismatches(1)	.	.	.
FRMD4A	TDRD12	-/.	+/.	10:13871992	19:32824139	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151474	ENSG00000173809	.	.	upstream	downstream	mismatches(1)	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9785),AC108063.2(20070)	./.	./.	4:16094104	4:16094163	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
PHKG2	PHKG2	+/.	+/.	16:30749000	16:30749091	intron	intron	duplication/ITD	0	0	0	188	221	low	.	.	.	.	.	ENSG00000156873	ENSG00000156873	.	.	upstream	downstream	duplicates	.	.	.
PHKG2	AC106886.2	+/.	+/.	16:30749000	16:30749091	intron	intron	duplication	0	0	0	188	221	low	.	.	.	.	.	ENSG00000156873	ENSG00000260899	.	.	upstream	downstream	duplicates	.	.	.
AC106886.2	AC106886.2	+/.	+/.	16:30749000	16:30749091	intron	intron	duplication/ITD	0	0	0	188	221	low	.	.	.	.	.	ENSG00000260899	ENSG00000260899	.	.	upstream	downstream	duplicates	.	.	.
PHKG2	PHKG2	+/.	+/.	16:30749000	16:30749090	intron	intron	duplication/ITD	0	0	0	188	221	low	.	.	.	.	.	ENSG00000156873	ENSG00000156873	.	.	upstream	downstream	small_insert_size	.	.	.
AC106886.2	PHKG2	+/.	+/.	16:30749000	16:30749090	intron	intron	duplication	0	0	0	188	221	low	.	.	.	.	.	ENSG00000260899	ENSG00000156873	.	.	upstream	downstream	small_insert_size	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462234	intron	intron	translocation/5'-5'	0	0	0	154	29	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	low_entropy(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462591	intron	intron	translocation/5'-5'	0	0	0	154	23	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	low_entropy(1)	.	.	.
PTMAP5	KRT18P49(68140),FRMPD3-AS1(15382)	+/+	./-	13:81690090	X:107497601	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000214182	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL157778.1	AL157778.1	+/.	+/.	X:98484522	X:98484573	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000281566	ENSG00000281566	.	.	upstream	downstream	duplicates(15),low_entropy(1)	.	.	.
ZNF442	FP236383.3	-/.	+/.	19:12353540	21:8444048	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000198342	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396544	8:22396553	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC022384.1	AL132719.1(111644),C14orf177(85171)	+/.	./.	3:10249514	14:98626442	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC117383.1	AC117383.1	-/.	-/.	3:141268163	3:141268207	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000249417	ENSG00000249417	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC117383.1	AC022215.2	-/.	-/.	3:141268163	3:141268207	intron	intron	duplication	0	0	0	1	1	low	.	.	.	.	.	ENSG00000249417	ENSG00000287155	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC022215.2	AC117383.1	-/.	-/.	3:141268163	3:141268207	intron	intron	duplication	0	0	0	1	1	low	.	.	.	.	.	ENSG00000287155	ENSG00000249417	.	.	upstream	downstream	low_entropy(1)	.	.	.
PXYLP1	AC117383.1	+/.	-/.	3:141268163	3:141268207	intron	intron	duplication/3'-3'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000155893	ENSG00000249417	.	.	upstream	downstream	low_entropy(1)	.	.	.
PXYLP1	AC022215.2	+/.	-/.	3:141268163	3:141268207	intron	intron	duplication/3'-3'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000155893	ENSG00000287155	.	.	upstream	downstream	low_entropy(1)	.	.	.
XKR6	MTRNR2L10(831),PAGE5(37073)	-/.	./.	8:11122770	X:55183273	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000171044	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC097376.3	XKR6	-/.	-/.	4:139450101	8:11122771	exon	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000273247	ENSG00000171044	.	.	downstream	downstream	mismatches(1)	.	.	.
ERC2	ERC2	-/.	-/.	3:56343150	3:56343193	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000187672	ENSG00000187672	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396547	8:22396556	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1)	.	.	.
LSAMP	LSAMP	-/.	-/.	3:116642650	3:116642659	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000185565	ENSG00000185565	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396557	8:22396566	intron	intron	duplication/ITD	0	0	0	229	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396540	8:22396551	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
ACOT7	UNC13A	-/.	-/.	1:6307249	19:17686909	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000097021	ENSG00000130477	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262590	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262592	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262594	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262598	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262600	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
MAP4K4	CFAP58	+/.	+/.	2:101785679	10:104396370	intron	intron	translocation/3'-3'	0	0	0	466	558	low	.	.	.	.	.	ENSG00000071054	ENSG00000120051	.	.	upstream	upstream	low_entropy	.	.	.
MAP4K4	CFAP58	+/.	+/.	2:101785681	10:104396370	intron	intron	translocation/3'-3'	0	0	0	496	558	low	.	.	.	.	.	ENSG00000071054	ENSG00000120051	.	.	upstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262572	10:104396370	intron	intron	translocation/3'-3'	0	0	0	2136	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262578	10:104396370	intron	intron	translocation/3'-3'	0	0	0	2136	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262580	10:104396370	intron	intron	translocation/3'-3'	0	0	0	2136	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262586	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262588	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4502),AP001994.1(77179)	FXNP1(22669),NRXN3(87426)	./.	./.	11:119744125	14:78082947	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4506),AP001994.1(77175)	FXNP1(22669),NRXN3(87426)	./.	./.	11:119744129	14:78082947	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4501),AP001994.1(77180)	FXNP1(22669),NRXN3(87426)	./.	./.	11:119744124	14:78082947	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4497),AP001994.1(77184)	FXNP1(22669),NRXN3(87426)	./.	./.	11:119744120	14:78082947	intergenic	intergenic	translocation	0	0	0	3583	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP001823.1(3430),ELMOD1(758)	FXNP1(22669),NRXN3(87426)	./.	./.	11:107590333	14:78082947	intergenic	intergenic	translocation	0	0	0	1909	336	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
AP001823.1(3433),ELMOD1(755)	FXNP1(22669),NRXN3(87426)	./.	./.	11:107590336	14:78082947	intergenic	intergenic	translocation	0	0	0	1909	336	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
AC105252.1(292282),AC079380.1(3756)	CT867976.1(150832),AC138776.1(197048)	./.	./.	4:133867490	22:11630475	intergenic	intergenic	translocation	0	0	0	11	8	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.4	AC105252.1(292282),AC079380.1(3756)	-/-	./+	21:8393596	4:133867490	exon	intergenic	translocation	0	0	0	16	11	low	.	.	.	.	.	ENSG00000280614	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.5	AC105252.1(292282),AC079380.1(3756)	-/-	./+	21:8437806	4:133867490	exon	intergenic	translocation	0	0	0	2	11	low	.	.	.	.	.	ENSG00000281181	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749060	intron	intron	translocation	0	0	0	31	283	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749060	intron	intron	translocation	0	0	0	31	283	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749066	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749066	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749069	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749072	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749078	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051974	1:161059767	intron	intron	duplication	0	0	0	66	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051980	1:161059767	intron	intron	duplication	0	0	0	66	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051986	1:161059767	intron	intron	duplication	0	0	0	97	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051989	1:161059767	intron	intron	duplication	0	0	0	97	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051992	1:161059767	intron	intron	duplication	0	0	0	97	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051998	1:161059767	intron	intron	duplication	0	0	0	97	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749081	intron	intron	translocation	0	0	0	31	221	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	AP000255.1(48398),TPT1P1(55536)	-/.	./.	1:161059767	21:31784805	intron	intergenic	translocation	0	0	0	31	90	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
ARHGAP30	AP000255.1(48416),TPT1P1(55518)	-/.	./.	1:161059767	21:31784823	intron	intergenic	translocation	0	0	0	31	89	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
ARHGAP30	AP000255.1(48419),TPT1P1(55515)	-/.	./.	1:161059767	21:31784826	intron	intergenic	translocation	0	0	0	31	89	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749084	intron	intron	translocation	0	0	0	31	221	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749084	intron	intron	translocation	0	0	0	31	221	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
SUCLG2-AS1	AL133465.1(47672),LINC00237(65342)	+/.	./.	3:67793926	20:21020234	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000241316	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
SUCLG2-AS1	WDR20	+/.	+/.	3:67793926	14:102221293	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000241316	ENSG00000140153	.	.	downstream	downstream	homopolymer(1)	.	.	.
FAM71F1	COL20A1	+/.	+/.	7:128714540	20:63320137	intron	CDS	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000135248	ENSG00000101203	.	.	downstream	upstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	14:77269677	14:77269775	intron	intron	duplication/ITD	0	0	0	9	87	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	low_entropy(1)	.	.	.
ABR	FP236383.3	-/.	+/.	17:1124172	21:8442045	intron	intron	translocation	0	0	0	8	5962	low	.	.	.	.	.	ENSG00000159842	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
FP671120.4	OPHN1	+/.	-/.	21:8214787	X:68289184	intron	intron	translocation/3'-3'	0	0	0	5263	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000079482	.	.	upstream	downstream	mismatches	.	.	.
FP236383.3	OPHN1	+/.	-/.	21:8397821	X:68289184	intron	intron	translocation/3'-3'	0	0	0	1126	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000079482	.	.	upstream	downstream	mismatches	.	.	.
ATP11A	FP236383.3	+/.	+/.	13:112710652	21:8442051	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000068650	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
ATP11A	FP236383.3	+/.	+/.	13:112710652	21:8397821	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000068650	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
ANKMY1	CAVIN4(57100),ACTG1P19(85751)	-/-	./+	2:240524259	9:100645489	CDS	intergenic	translocation	0	0	0	1	0	low	.	.	Ankyrin_repeat(50%),MORN_repeat(100%)|	.	.	ENSG00000144504	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SOBP	TPCN2	+/.	+/.	6:107646188	11:69085364	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000112320	ENSG00000162341	.	.	downstream	downstream	mismatches(1)	.	.	.
SOBP	C11orf21	+/.	-/.	6:107646187	11:2301127	intron	exon	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000112320	ENSG00000110665	.	.	downstream	downstream	mismatches(1)	.	.	.
C11orf21	NEU3(47332),AP003175.1(3018)	-/.	./.	11:2301127	11:75066225	exon	intergenic	inversion	0	0	0	4	0	low	.	.	.	.	.	ENSG00000110665	.	.	.	downstream	downstream	mismatches(1)	.	.	.
C11orf21	AC016152.1	-/.	-/.	11:2301127	12:98195391	exon	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000110665	ENSG00000258312	.	.	downstream	upstream	mismatches(1)	.	.	.
MRPS2	ZNF211	+/+	+/-	9:135501312	19:57633012	exon	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000122140	ENSG00000121417	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396494	8:22396592	intron	intron	duplication/ITD	0	0	0	31	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
COMETT	COMETT	-/.	-/.	7:116638071	7:116638080	intron	intron	duplication/ITD	0	0	0	63	0	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
MGAT5	FP236383.3	+/.	+/.	2:134274704	21:8400590	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000152127	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
UBOX5	RNU6-309P(227283),AL928646.1(390)	-/.	./.	20:3129761	X:109054152	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000185019	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UBOX5-AS1	RNU6-309P(227283),AL928646.1(390)	+/.	./.	20:3129761	X:109054152	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000235958	.	.	.	downstream	upstream	mismatches(1)	.	.	.
INTS4	UBOX5	-/.	-/.	11:77886462	20:3129761	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000149262	ENSG00000185019	.	.	upstream	downstream	mismatches(1)	.	.	.
INTS4	UBOX5-AS1	-/.	+/.	11:77886462	20:3129761	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000149262	ENSG00000235958	.	.	upstream	downstream	mismatches(1)	.	.	.
AAMDC	UBOX5	+/.	-/.	11:77886462	20:3129761	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000087884	ENSG00000185019	.	.	upstream	downstream	mismatches(1)	.	.	.
CDC27P1(16913),AC097532.1(5840)	RNF34	./.	+/.	2:132279955	12:121407134	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000170633	.	.	downstream	upstream	mismatches(1)	.	.	.
HSD11B1-AS1	HSD11B1-AS1	-/.	-/.	1:209674668	1:209674711	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000227591	ENSG00000227591	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
GPAT3	MTRNR2L10	+/.	-/.	4:83567271	X:55181911	intron	3'UTR	translocation	0	0	0	7	23	low	.	.	.	.	.	ENSG00000138678	ENSG00000256045	.	.	downstream	downstream	mismatches(1)	.	.	.
AL593844.1	TRBV24OR9-2(9134),TRBV25OR9-2(3418)	+/.	./.	6:68230113	9:33658748	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286564	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRBV24OR9-2(9134),TRBV25OR9-2(3418)	ATP7BP1(104862),RPS4XP18(62309)	./.	./.	9:33658748	18:22524156	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02549	AC025627.3	-/.	+/.	6:68230113	17:19601313	intron	exon	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000226497	ENSG00000266179	.	.	upstream	upstream	mismatches(1)	.	.	.
PGAM5P1(106600),TMEM232(297210)	AC025627.3	./.	+/.	5:109992023	17:19601313	intergenic	exon	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000266179	.	.	upstream	upstream	mismatches(1)	.	.	.
MTND1P22(592),AC107208.1(31695)	LINC02549	./.	-/.	4:155464415	6:68230113	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000226497	.	.	downstream	upstream	mismatches(1)	.	.	.
MTND1P22(592),AC107208.1(31695)	AL593844.1	./.	+/.	4:155464415	6:68230113	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000286564	.	.	downstream	upstream	mismatches(1)	.	.	.
PGAM5P1(106600),TMEM232(297210)	TRBV24OR9-2(9134),TRBV25OR9-2(3418)	./.	./.	5:109992023	9:33658748	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MTND1P22(592),AC107208.1(31695)	ATP7BP1(104862),RPS4XP18(62309)	./.	./.	4:155464415	18:22524156	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MTND1P22(592),AC107208.1(31695)	PGAM5P1(106600),TMEM232(297210)	./.	./.	4:155464415	5:109992023	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPAT3	MTND1P22(589),AC107208.1(31698)	+/.	./.	4:83567271	4:155464412	intron	intergenic	inversion	0	0	0	7	23	low	.	.	.	.	.	ENSG00000138678	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC090204.1	ATP7BP1(104862),RPS4XP18(62309)	+/.	./.	8:33013508	18:22524156	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000247134	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PGAM5P1(106600),TMEM232(297210)	AC090204.1	./.	+/.	5:109992023	8:33013508	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000247134	.	.	upstream	upstream	mismatches(1)	.	.	.
AL593844.1	MTRNR2L10	+/.	-/.	6:68230113	X:55181914	intron	3'UTR	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000286564	ENSG00000256045	.	.	upstream	downstream	mismatches(1)	.	.	.
ATP7BP1(104862),RPS4XP18(62309)	MTRNR2L10	./.	-/.	18:22524156	X:55181914	intergenic	3'UTR	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000256045	.	.	downstream	downstream	mismatches(1)	.	.	.
PGAM5P1(106600),TMEM232(297210)	MTRNR2L10	./.	-/.	5:109992023	X:55181914	intergenic	3'UTR	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000256045	.	.	upstream	downstream	mismatches(1)	.	.	.
GPAT3	TRBV24OR9-2(9137),TRBV25OR9-2(3415)	+/.	./.	4:83567271	9:33658751	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000138678	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093702.1(80280),LINC01121(70868)	TRIM44	./.	+/.	2:45093948	11:35805233	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000166326	.	.	downstream	downstream	mismatches(1)	.	.	.
Y_RNA(92915),RNA5SP103(1239)	BRI3BP	./.	+/.	2:128443842	12:125018033	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000184992	.	.	downstream	upstream	homopolymer(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	LNCARSR	./.	-/.	2:128443843	9:79564044	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000233086	.	.	downstream	upstream	mismatches(1)	.	.	.
CSK(8121),LMAN1L(1397)	AC018445.6(26773),AC068473.3(8847)	./.	./.	15:74811319	18:79567613	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC018445.6(26774),AC068473.3(8846)	GAGE13	./.	+/.	18:79567614	X:49331988	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000274274	.	.	downstream	downstream	homopolymer(1)	.	.	.
SSPOP	GAGE12J	+/.	+/.	7:149787748	X:49322442	exon	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000197558	ENSG00000224659	.	.	upstream	downstream	mismatches(1)	.	.	.
AL592295.1	LINC01399	+/.	-/.	1:161406098	22:35143066	exon	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	ENSG00000233080	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL592295.1	RAD51B	+/.	+/.	1:161406098	14:68488619	exon	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	ENSG00000182185	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL139246.1	AL592295.1	-/-	+/+	1:2492563	1:161406098	exon	exon	inversion	0	0	0	0	11	low	.	.	.	.	.	ENSG00000224387	ENSG00000215840	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL451042.1(2729),ARHGEF19-AS1(33242),ARHGEF19(33242)	AL592295.1	./.	+/.	1:16164612	1:161406098	intergenic	exon	deletion	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000215840	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL592295.1	SHISAL1	+/.	-/.	1:161406098	22:44309231	exon	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	ENSG00000138944	.	.	upstream	downstream	homopolymer(1)	.	.	.
AL592295.1	RNU7-155P(125409),AC118653.1(172711)	+/.	./.	1:161406098	17:71423627	exon	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL592295.1	EIF5A	+/.	+/.	1:161406098	17:7309069	exon	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	ENSG00000132507	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC02339(40002),RAC1P8(337202)	CIAO2A(125),SNX1(141)	./.	./.	13:61467948	15:64093982	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
THORLNC(1001),LINC01956(543714)	AC006055.1(114300),AC006058.2(102614)	./.	./.	2:118223251	3:43894282	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22757),NRXN3(87338)	./.	./.	14:78082946	14:78083035	intergenic	intergenic	duplication/ITD	0	0	0	336	401	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22749),NRXN3(87346)	./.	./.	14:78082946	14:78083027	intergenic	intergenic	duplication/ITD	0	0	0	336	401	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
HIVEP3	FAM89A	-/-	-/+	1:41583018	1:231020199	CDS	intron	inversion/5'-5'	0	0	0	4	0	low	.	.	Zinc_finger__C2H2_type(48%)|	.	.	ENSG00000127124	ENSG00000182118	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP3	RPRML	-/-	-/+	1:41583018	17:46978794	CDS	CDS	translocation/5'-5'	0	0	0	4	0	low	.	.	Zinc_finger__C2H2_type(48%)|	.	.	ENSG00000127124	ENSG00000179673	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP3	TSSK6	-/-	-/+	1:41583018	19:19515067	CDS	CDS	translocation/5'-5'	0	0	0	4	0	low	.	.	Zinc_finger__C2H2_type(48%)|	.	.	ENSG00000127124	ENSG00000178093	.	.	upstream	upstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262501	intergenic	intron	translocation	0	0	0	25	2239	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262505	intergenic	intron	translocation	0	0	0	25	2239	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	LINC02620	./.	-/.	2:64025816	10:104479813	intergenic	intron	translocation	0	0	0	25	2200	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262469	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262473	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262481	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262491	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262493	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262495	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262497	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
ALS2CL	JPH1	-/-	-/-	3:46676896	8:74321339	CDS	5'UTR	translocation	0	0	0	0	0	low	.	.	MORN_repeat(100%)|MORN_repeat(100%)	.	.	ENSG00000178038	ENSG00000104369	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4499),AP001994.1(77182)	FXNP1(22687),NRXN3(87408)	./.	./.	11:119744122	14:78082965	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4497),AP001994.1(77184)	FXNP1(22687),NRXN3(87408)	./.	./.	11:119744120	14:78082965	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC092944.1	AC092944.1	+/.	+/.	3:157252470	3:157252552	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000243176	ENSG00000243176	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	19:30664205	19:30664218	intron	intron	duplication/ITD	0	0	0	21	0	low	.	.	.	.	.	ENSG00000198597	ENSG00000198597	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	9:106864040	9:106864055	intron	intron	duplication/ITD	0	0	0	38	27	low	.	.	.	.	.	ENSG00000148143	ENSG00000148143	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
MET	MET	+/.	+/.	7:116716273	7:116716338	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000105976	ENSG00000105976	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL121776.1	HIPK2	+/+	-/-	20:47071971	7:139754035	exon	intron	translocation	0	0	0	6	0	low	.	.	|Protein_kinase_domain(100%)	.	.	ENSG00000239783	ENSG00000064393	.	.	downstream	downstream	mismatches(1)	.	.	.
AL121776.1	KIR2DL4	+/+	+/+	20:47071971	19:54803810	exon	intron	translocation	0	0	0	6	0	low	.	.	|Immunoglobulin_domain(100%)	.	.	ENSG00000239783	ENSG00000189013	.	.	downstream	upstream	mismatches(1)	.	.	.
HIPK2	RAB3D	-/.	-/.	7:139754035	19:11335757	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000064393	ENSG00000105514	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00703	GABRG3	+/.	+/.	10:4389675	15:27169543	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224382	ENSG00000182256	.	.	downstream	downstream	mismatches(1)	.	.	.
RHBDD1	AL138997.1(126442),SPATA2P1(33534)	+/.	./.	2:226969293	13:56180839	intron	intergenic	translocation	0	0	0	4	1	low	.	.	.	.	.	ENSG00000144468	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RHBDD1	RNU6-1119P(200189),AC113385.3(21732)	+/.	./.	2:226969293	5:100353968	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000144468	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC020718.1	LINC02339(25674),RAC1P8(351530)	-/.	./.	2:198941357	13:61453620	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000231557	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DENND5B	LINC02339(25674),RAC1P8(351530)	-/.	./.	12:31477254	13:61453620	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000170456	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ALDH1A1	AC005357.2	-/-	+/+	9:72900678	19:27961840	3'UTR	intron	translocation	0	0	0	1	4	low	.	.	Aldehyde_dehydrogenase_family(100%)|	.	.	ENSG00000165092	ENSG00000267623	.	.	upstream	upstream	mismatches(1)	.	.	.
MEG8	AC025580.2	+/.	+/.	14:101038658	15:45462594	intron	intron	translocation/5'-5'	0	0	0	1	23	low	.	.	.	.	.	ENSG00000225746	ENSG00000259354	.	.	downstream	downstream	low_entropy(1)	.	.	.
FP236383.3	PAXBP1(165),C21orf62-AS1(143)	+/.	./.	21:8403228	21:32771957	intron	intergenic	inversion	0	0	0	4	466	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	downstream	mismatches	.	.	.
TLE4	AC018653.3	+/.	-/.	9:79572886	12:7130724	intron	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000256967	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KRT19P4(10028),PBLD(11133)	AC018653.3	./.	-/.	10:68271527	12:7130723	intergenic	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000256967	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
KRT19P4(10027),PBLD(11134)	AC064799.2	./.	+/.	10:68271526	15:71338277	intergenic	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000260586	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
THSD4	GLP2R	+/.	+/.	15:71338277	17:9862139	intron	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000187720	ENSG00000065325	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMC4	FAM89A(803),AL109810.1(76774)	-/-	./+	19:54168417	1:231041057	exon	intergenic	translocation	0	0	0	4	6	low	.	.	.	.	.	ENSG00000167608	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749075	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
TMC4	CLSTN3	-/-	+/+	19:54168417	12:7130724	exon	intron	translocation	0	0	0	4	0	low	.	.	|Cadherin_domain(100%)	.	.	ENSG00000167608	ENSG00000139182	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ENPP2(15276),RN7SKP153(23101)	GLP2R	./.	+/.	8:119688729	17:9862139	intergenic	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	.	ENSG00000065325	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC016954.1	LINC01500	-/-	+/+	12:32228004	14:58935954	exon	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000258134	ENSG00000258583	.	.	upstream	upstream	mismatches(1)	.	.	.
AC016954.1	AC034268.2	-/-	-/-	12:32228003	17:53282098	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258134	ENSG00000285939	.	.	upstream	downstream	mismatches(1)	.	.	.
AC108073.3	RNU7-51P(539124),RNU6ATAC28P(162620)	-/.	./.	4:187943698	14:83587764	exon	intergenic	translocation	0	1	0	13	1	low	.	.	.	.	.	ENSG00000286641	.	.	.	downstream	downstream	min_support	.	.	.
AC026396.1(48615),AL731533.1(24920)	RPTOR	./.	+/.	10:2985056	17:80654681	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000141564	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479914	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479891	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
AC021218.1(49386),Y_RNA(170393)	LINC01571(114626),C16orf97(102653)	./.	./.	7:156015729	16:51902834	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GALNT2	LINC01571(114626),C16orf97(102653)	+/.	./.	1:230187482	16:51902834	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000143641	.	.	.	upstream	upstream	mismatches(1)	.	.	.
C16orf95	LINC01571(114625),C16orf97(102654)	-/-	./+	16:87317152	16:51902833	CDS	intergenic	inversion	0	0	0	0	5	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	upstream	mismatches(1)	.	.	.
C16orf95	AC093878.1(35587),AC097535.2(126281)	-/-	./+	16:87317153	4:33274257	CDS	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC01571(114625),C16orf97(102654)	DIP2A(27616),S100B(973)	./.	./.	16:51902833	21:46597631	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093878.1(35587),AC097535.2(126281)	DIP2A(27617),S100B(972)	./.	./.	4:33274257	21:46597632	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
EYA2	TIAM1	+/.	-/.	20:46965048	21:31199230	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000064655	ENSG00000156299	.	.	upstream	downstream	mismatches(1)	.	.	.
CTNNA3	TIAM1	-/.	-/.	10:66433312	21:31199230	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000183230	ENSG00000156299	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF385B	ZNF675	-/-	-/-	2:179861208	19:23534168	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144331	ENSG00000197372	.	.	upstream	downstream	mismatches(1)	.	.	.
CAMK2A	AC068896.1	-/.	-/.	5:150268435	10:124643380	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000070808	ENSG00000258539	.	.	downstream	downstream	mismatches(1)	.	.	.
CAMK2A	ADGRD1	-/.	+/.	5:150268436	12:131028915	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000070808	ENSG00000111452	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU1-154P(723),AC239860.3(27382)	RNU1-154P(732),AC239860.3(27373)	./.	./.	1:145432416	1:145432425	intergenic	intergenic	duplication/ITD	0	0	0	60	60	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NECTIN4(8116),KLHDC9(687)	NECTIN4(8179),KLHDC9(624)	./.	./.	1:161097674	1:161097737	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(917),IGHV4-39(2495)	./.	./.	14:106419121	14:106419216	intergenic	intergenic	duplication/ITD	0	0	0	192	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LRAT	ETS1	+/.	-/.	4:154635483	11:128552771	intron	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000121207	ENSG00000134954	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.3(2618),FP671120.7(1825)	FP236383.3	./.	+/.	21:8252767	21:8442047	intergenic	intron	deletion/read-through	0	0	0	9	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.3(2618),FP671120.7(1825)	FP236383.3	./.	+/.	21:8252767	21:8397817	intergenic	intron	deletion/read-through	0	0	0	9	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
NOTCH2NLB(44936),RNU6-1171P(14664)	U3(104497),GPC1(41723)	./.	./.	1:148724715	2:240393940	intergenic	intergenic	translocation	0	0	0	4	357	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
MTRNR2L5	MT-RNR2	+/.	+/.	10:55599444	MT:2450	5'UTR	exon	translocation/3'-3'	0	0	0	8	.	low	.	.	.	.	.	ENSG00000249860	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RAD51B	GSE1	+/.	+/.	14:68714352	16:85260115	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000182185	ENSG00000131149	.	.	upstream	upstream	mismatches(1)	.	.	.
AC087482.1	MT-RNR2	-/.	+/.	15:67040912	MT:2450	intron	exon	translocation	0	0	0	8	.	low	.	.	.	.	.	ENSG00000259347	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RAMP3(65701),AC073968.2(16678)	MTRNR2L8	./.	-/.	7:45252003	11:10508684	intergenic	5'UTR	translocation	0	0	0	71	8	low	.	.	.	.	.	.	ENSG00000255823	.	.	upstream	downstream	mismatches(1)	.	.	.
RAMP3(65701),AC073968.2(16678)	MT-RNR2	./.	+/.	7:45252003	MT:2175	intergenic	exon	translocation	0	0	0	71	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DHFR	AC087482.1	-/.	-/.	5:80650268	15:67040912	intron	intron	translocation	0	0	0	68	8	low	.	.	.	.	.	ENSG00000228716	ENSG00000259347	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	MTRNR2L8	-/.	-/.	3:96617731	11:10508409	5'UTR	5'UTR	translocation/3'-3'	0	0	0	8	70	low	.	.	.	.	.	ENSG00000269028	ENSG00000255823	.	.	downstream	downstream	mismatches(1)	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9777),AC108063.2(20078)	./.	./.	4:16094104	4:16094155	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
MTRNR2L5	MTRNR2L8	+/.	-/.	10:55599444	11:10508409	5'UTR	5'UTR	translocation/3'-3'	0	0	0	8	70	low	.	.	.	.	.	ENSG00000249860	ENSG00000255823	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRNR2L8	AC087482.1	-/.	-/.	11:10508409	15:67040912	5'UTR	intron	translocation	0	0	0	70	8	low	.	.	.	.	.	ENSG00000255823	ENSG00000259347	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	MT-RNR2	-/.	+/.	3:96617456	MT:2175	5'UTR	exon	translocation/3'-3'	0	0	0	70	.	low	.	.	.	.	.	ENSG00000269028	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MTRNR2L12	DHFR	-/.	-/.	3:96617456	5:80650543	5'UTR	intron	translocation/3'-3'	0	0	0	70	8	low	.	.	.	.	.	ENSG00000269028	ENSG00000228716	.	.	downstream	downstream	mismatches(1)	.	.	.
KRT19P4(10028),PBLD(11133)	CLSTN3	./.	+/.	10:68271527	12:7130723	intergenic	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000139182	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
MTRNR2L12	MTRNR2L12	-/.	-/.	3:96617456	3:96617731	5'UTR	5'UTR	inversion/3'-3'	0	0	0	70	8	low	.	.	.	.	.	ENSG00000269028	ENSG00000269028	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	MTRNR2L5	-/.	+/.	3:96617456	10:55599444	5'UTR	5'UTR	translocation/3'-3'	0	0	0	70	8	low	.	.	.	.	.	ENSG00000269028	ENSG00000249860	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	AL356131.1(332834),MTRNR2L9(183)	-/.	./.	3:96617731	6:61574145	5'UTR	intergenic	translocation	0	0	0	8	65	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L8	MTRNR2L1	-/.	+/.	11:10508684	17:22523879	5'UTR	5'UTR	translocation/3'-3'	0	0	0	8	4	low	.	.	.	.	.	ENSG00000255823	ENSG00000256618	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L1	MT-RNR2	+/.	+/.	17:22523879	MT:2175	5'UTR	exon	translocation/3'-3'	0	0	0	4	.	low	.	.	.	.	.	ENSG00000256618	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DHFR	MTRNR2L1	-/.	+/.	5:80650543	17:22523879	intron	5'UTR	translocation/3'-3'	0	0	0	8	4	low	.	.	.	.	.	ENSG00000228716	ENSG00000256618	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L8	MT-RNR2	-/.	+/.	11:10508684	MT:2450	5'UTR	exon	translocation/3'-3'	0	0	0	8	.	low	.	.	.	.	.	ENSG00000255823	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MT-RNR2	MT-RNR2	+/.	+/.	MT:2175	MT:2450	exon	exon	inversion/3'-3'	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02235	AP003390.1(4500),AP001994.1(77181)	+/.	./.	8:81842436	11:119744123	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
SNX16	AP003390.1(4500),AP001994.1(77181)	-/.	./.	8:81842436	11:119744123	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
LINC02235	AP003390.1(4498),AP001994.1(77183)	+/.	./.	8:81842436	11:119744121	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
SNX16	AP003390.1(4496),AP001994.1(77185)	-/.	./.	8:81842436	11:119744119	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
LINC02235	AP003390.1(4494),AP001994.1(77187)	+/.	./.	8:81842436	11:119744117	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262598	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262600	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	AP003390.1(4498),AP001994.1(77183)	+/.	./.	1:225078903	11:119744121	intron	intergenic	translocation	0	0	0	144	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	AP003390.1(4500),AP001994.1(77181)	+/.	./.	1:225078903	11:119744123	intron	intergenic	translocation	0	0	0	144	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	AP003390.1(4502),AP001994.1(77179)	+/.	./.	1:225078903	11:119744125	intron	intergenic	translocation	0	0	0	144	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	FXNP1(22777),NRXN3(87318)	+/.	./.	1:225078903	14:78083055	intron	intergenic	translocation	0	0	0	144	396	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785678	intron	intron	translocation	0	0	0	144	466	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785693	intron	intron	translocation	0	0	0	144	496	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262570	intron	intron	translocation	0	0	0	144	2136	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262576	intron	intron	translocation	0	0	0	144	2136	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262578	intron	intron	translocation	0	0	0	144	2136	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262582	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262588	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262590	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262594	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
RPS3AP40(7055),AC004923.1(1077)	AC025580.2	./.	+/.	11:67933486	15:45463199	intergenic	intron	translocation	0	0	0	24	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	upstream	downstream	mismatches(2)	.	.	.
ZNF462	RPS3AP40(7055),AC004923.1(1077)	+/.	./.	9:106877175	11:67933486	intron	intergenic	translocation	0	0	0	3	24	low	.	.	.	.	.	ENSG00000148143	.	.	.	upstream	upstream	mismatches(2)	.	.	.
METTL15	AP000432.1(44850),AP000432.2(174)	+/.	./.	11:28310961	21:17705234	intron	intergenic	translocation	0	0	0	167	0	low	.	.	.	.	.	ENSG00000169519	.	.	.	downstream	downstream	mismatches(1)	.	.	.
METTL15	AP000432.1(44850),AP000432.2(174)	+/.	./.	11:28310958	21:17705234	intron	intergenic	translocation	0	0	0	167	0	low	.	.	.	.	.	ENSG00000169519	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HNRNPA3P5(51850),LINC01052(25456)	PEPD	./.	-/.	13:65840614	19:33426974	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000124299	.	.	downstream	downstream	mismatches(1)	.	.	.
Y_RNA(16574),EXOC6(99649)	PEPD	./.	-/.	10:92727182	19:33426974	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000124299	.	.	upstream	downstream	mismatches(1)	.	.	.
AC094105.2(24220),LINC01377(185660)	PEPD	./.	-/.	5:2992175	19:33426974	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000124299	.	.	downstream	downstream	mismatches(1)	.	.	.
NCOR2	PEPD	-/.	-/.	12:124408946	19:33426974	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000196498	ENSG00000124299	.	.	upstream	downstream	mismatches(1)	.	.	.
RARB	CR392039.1(944),CR392039.3(8122)	+/.	./.	3:25373702	21:8988374	intron	intergenic	translocation	0	0	0	1	48	low	.	.	.	.	.	ENSG00000077092	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC009154.1	FP236383.3	+/.	+/.	16:86665156	21:8392868	intron	intron	translocation	0	0	0	0	43	low	.	.	.	.	.	ENSG00000261161	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
VPS54(6388),AC012368.2(60537)	AP005436.1	./.	-/.	2:64025816	11:88092351	intergenic	intron	translocation	0	0	0	25	1170	low	.	.	.	.	.	.	ENSG00000255102	.	.	downstream	upstream	mismatches	.	.	.
AC009154.1	FP671120.3(3894),FP671120.7(549)	+/.	./.	16:86665156	21:8254043	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261161	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC00499	LINC00499	+/.	+/.	4:138451996	4:138452047	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000251372	ENSG00000251372	.	.	upstream	downstream	low_entropy(1)	.	.	.
PTGR1	PTGR1	-/.	-/.	9:111561105	9:111561190	intron	intron	duplication/ITD	0	0	0	1	3	low	.	.	.	.	.	ENSG00000106853	ENSG00000106853	.	.	upstream	downstream	low_entropy(1)	.	.	.
PTGR1	ZNF483	-/.	+/.	9:111561105	9:111561190	intron	intron	duplication/5'-5'	0	0	0	1	3	low	.	.	.	.	.	ENSG00000106853	ENSG00000173258	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF483	PTGR1	+/.	-/.	9:111561105	9:111561190	intron	intron	duplication/3'-3'	0	0	0	1	3	low	.	.	.	.	.	ENSG00000173258	ENSG00000106853	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC003975.1(423134),AC000372.1(22004)	5_8S_rRNA(1480),FP236383.3(122230)	./.	./.	7:126356966	21:8258413	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MICOS10	DLG2	+/.	-/.	1:19543428	11:85484010	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173436	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
GAD2(21428),AL355798.1(53048)	DLG2	./.	-/.	10:26325986	11:85484011	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
MICOS10	FP236383.3	+/.	+/.	1:19543428	21:8397230	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173436	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC003975.1(423134),AC000372.1(22004)	FP236383.3	./.	+/.	7:126356966	21:8397230	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GAD2(21428),AL355798.1(53048)	FP236383.3	./.	+/.	10:26325986	21:8397231	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GAD2(21428),AL355798.1(53048)	5_8S_rRNA(1481),FP236383.3(122229)	./.	./.	10:26325986	21:8258414	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092651.2	AC092651.2	+/.	+/.	2:87105967	2:87106017	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000287931	ENSG00000287931	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396372	10:104479902	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396372	10:104479904	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396372	10:104479906	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
AL133338.2(172092),GRIK2(118827)	DDB2	./.	+/.	6:101062430	11:47233103	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	RNU1-112P(19843),DMRTC1B(16297)	+/.	./.	11:47233103	X:72760712	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC026412.1	AC012060.1(92676),LINC02248(36443)	-/.	./.	5:1602551	15:26358594	exon	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000188002	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC026412.1	DDB2	-/.	+/.	5:1602549	11:47233103	exon	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000188002	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS3	AP001599.1	+/.	+/.	7:150995587	21:26914103	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000164867	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
AL137785.1(39817),MPPE1P1(44524)	AP001599.1	./.	+/.	14:89065624	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	AL137785.1(39816),MPPE1P1(44525)	+/.	./.	11:47233103	14:89065623	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PHF12	PCED1A	-/-	-/-	17:28912771	20:3233552	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	PHD-finger(100%),PHD_finger_protein_12_MRG_binding_domain(100%)|GDSL/SGNH-like_Acyl-Esterase_family_found_in_Pmr5_and_Cas1p(100%)	.	.	ENSG00000109118	ENSG00000132635	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396370	10:104396453	intron	intron	duplication/ITD	0	0	0	558	554	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	small_insert_size	.	.	.
SBNO2	RAB3D	-/.	-/.	19:1146080	19:11335757	intron	CDS	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000064932	ENSG00000105514	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01342(16182),MIR200B(6866)	PLXNA4	./.	-/.	1:1160238	7:132611063	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000221866	.	.	upstream	upstream	mismatches(1)	.	.	.
UBBP4	PLXNA4	+/+	-/+	17:22204436	7:132611063	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000263563	ENSG00000221866	.	.	downstream	upstream	mismatches(1)	.	.	.
PLXNA4	BCAS3	-/.	+/.	7:132611063	17:61014025	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000221866	ENSG00000141376	.	.	upstream	upstream	mismatches(1)	.	.	.
CHDH	C8orf86(11683),RNF5P1(28039)	-/.	./.	3:53823873	8:38572622	CDS	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000016391	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	CHODL	+/.	+/.	21:8444814	21:18199582	intron	intron	inversion/3'-3'	0	0	0	62	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000154645	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009301.1(3953),GALNT14(9127)	FP236383.3	./.	+/.	2:30901340	21:8444814	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SLCO5A1	UNC13C(125173),AC025272.1(298136)	-/.	./.	8:69690371	15:54758587	intron	intergenic	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLCO5A1	AL049828.1	-/.	+/.	8:69690371	14:40135480	intron	intron	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000258526	.	.	downstream	downstream	mismatches(1)	.	.	.
SLCO5A1	ENTPD1-AS1(16753),RNU6-271P(5744)	-/.	./.	8:69690371	10:96107003	intron	intergenic	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLCO5A1	TUSC2P2(120150),DLGAP5P2(150249)	-/.	./.	8:69690371	X:92892241	intron	intergenic	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLCO5A1	ZNF24(8360),ZNF396(12852)	-/.	./.	8:69690370	18:35353842	intron	intergenic	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CWC22(210065),AC012669.1(255775)	FP236383.3	./.	+/.	2:180217362	21:8400582	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ENTPD1-AS1(16753),RNU6-271P(5744)	FP236383.3	./.	+/.	10:96107003	21:8400582	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CR589904.2	FP671120.4	-/.	+/.	1:248727096	21:8217544	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000286015	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	CHODL	+/.	+/.	21:8217544	21:18199582	intron	intron	inversion/3'-3'	0	0	0	25	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000154645	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009301.1(3953),GALNT14(9127)	FP671120.4	./.	+/.	2:30901340	21:8217544	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AL049828.1	FP671120.4	+/.	+/.	14:40135480	21:8217544	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000258526	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF24(8360),ZNF396(12852)	FP236383.3	./.	+/.	18:35353842	21:8444815	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023141.7(3842403),AC128676.1(595912)	CCDC6	./.	-/.	7:61679449	10:59900211	intergenic	intron	translocation	0	0	0	0	13	low	.	.	.	.	.	.	ENSG00000108091	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC023141.7(4271051),AC128676.1(167264)	CCDC6	./.	-/.	7:62108097	10:59900211	intergenic	intron	translocation	0	0	0	0	13	low	.	.	.	.	.	.	ENSG00000108091	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC128676.1(303218),RNU6-417P(432567)	CCDC6	./.	-/.	7:62578896	10:59900211	intergenic	intron	translocation	0	0	0	0	13	low	.	.	.	.	.	.	ENSG00000108091	.	.	downstream	downstream	homopolymer(1)	.	.	.
LYPD6(60748),MMADHC(34751)	OR4A6P(127439),TRIM48(408900)	./.	./.	2:149534886	11:54853255	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
CCDC6	KRT8P17(4685961),SSBL2P(107156)	-/.	./.	10:59900212	X:62672094	intron	intergenic	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000108091	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
LYPD6(60748),MMADHC(34751)	OR4A6P(481291),TRIM48(55048)	./.	./.	2:149534886	11:55207107	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
OR4A6P(127439),TRIM48(408900)	C12orf65	./.	+/.	11:54853255	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000130921	.	.	upstream	downstream	homopolymer(1)	.	.	.
OR4A6P(127439),TRIM48(408900)	MPHOSPH9	./.	-/.	11:54853255	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000051825	.	.	upstream	downstream	homopolymer(1)	.	.	.
CCDC6	KRT8P17(4589204),SSBL2P(203913)	-/.	./.	10:59900211	X:62575337	intron	intergenic	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000108091	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
OR4A6P(487048),TRIM48(49291)	MPHOSPH9	./.	-/.	11:55212864	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000051825	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC023141.7(3842403),AC128676.1(595912)	C12orf65	./.	+/.	7:61679449	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000130921	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC023141.7(3842403),AC128676.1(595912)	MPHOSPH9	./.	-/.	7:61679449	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000051825	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC023141.7(4271051),AC128676.1(167264)	MPHOSPH9	./.	-/.	7:62108097	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000051825	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC128676.1(303218),RNU6-417P(432567)	MPHOSPH9	./.	-/.	7:62578896	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000051825	.	.	downstream	downstream	homopolymer(1)	.	.	.
KCNK9	CNFN	-/.	-/.	8:139665900	19:42387372	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169427	ENSG00000105427	.	.	downstream	downstream	mismatches(1)	.	.	.
MPHOSPH9	KRT8P17(4589204),SSBL2P(203913)	-/.	./.	12:123233994	X:62575337	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000051825	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
OR4A44P(124090),AC027369.6(127528)	C12orf65	./.	+/.	11:48752583	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000130921	.	.	downstream	downstream	homopolymer(1)	.	.	.
OR4A6P(481291),TRIM48(55048)	LINC01841(5040),ADGRE5(5265)	./.	./.	11:55207107	19:14375236	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
CCDC6	OR4A44P(124090),AC027369.6(127528)	-/.	./.	10:59900211	11:48752583	intron	intergenic	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000108091	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC023141.7(4271051),AC128676.1(167264)	LINC01841(5040),ADGRE5(5265)	./.	./.	7:62108097	19:14375236	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
CCDC6	AP005242.1	-/.	+/.	10:59900212	18:15105135	intron	intron	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000108091	ENSG00000263635	.	.	downstream	downstream	homopolymer(1)	.	.	.
FN1	CCDC6	-/.	-/.	2:215429349	10:59900212	intron	intron	translocation	0	0	0	0	13	low	.	.	.	.	.	ENSG00000115414	ENSG00000108091	.	.	upstream	downstream	homopolymer(1)	.	.	.
CCDC6	OR4A6P(127439),TRIM48(408900)	-/.	./.	10:59900211	11:54853255	intron	intergenic	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000108091	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
HSBP1(1017),MLYCD(78361)	HSBP1(1062),MLYCD(78316)	./.	./.	16:83820754	16:83820799	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KIF6(66772),DAAM2(118)	DDB2	./.	+/.	6:39792180	11:47233103	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	RNF213	+/.	+/.	11:47233103	17:80312394	intron	intron	translocation/5'-5'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000173821	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02159(139065),GABRB2(210738)	ABLIM1	./.	-/.	5:161077691	10:114556236	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000099204	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	DNAH9	./.	+/.	2:240393940	17:11743090	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000007174	.	.	upstream	downstream	mismatches(1)	.	.	.
AC074011.1	U3(104497),GPC1(41723)	-/.	./.	2:28663044	2:240393940	intron	intergenic	inversion	0	0	0	0	357	low	.	.	.	.	.	ENSG00000230730	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ATP1B3P1(21),PAPOLG(20517)	THSD7B	./.	+/.	2:60735736	2:137578927	intergenic	intron	inversion	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000144229	.	.	downstream	downstream	mismatches(1)	.	.	.
AC099520.1	U40455.1(221294),RPL7L1P11(44536)	-/.	./.	5:104886945	X:148420172	exon	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000251574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ASB18	AP002961.1	-/.	-/.	2:236211569	11:103270616	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182177	ENSG00000285878	.	.	downstream	downstream	mismatches(1)	.	.	.
ASB18	DYNC2H1	-/.	+/.	2:236211569	11:103270616	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182177	ENSG00000187240	.	.	downstream	downstream	mismatches(1)	.	.	.
AC003975.1(423134),AC000372.1(22004)	FP671120.4	./.	+/.	7:126356966	21:8214192	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC019068.1	AP002961.1	+/.	-/.	2:236211569	11:103270616	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233611	ENSG00000285878	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092651.2	AC092651.2	+/.	+/.	2:87105967	2:87106026	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000287931	ENSG00000287931	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC019068.1	DYNC2H1	+/.	+/.	2:236211569	11:103270616	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233611	ENSG00000187240	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397819	21:8446142	intron	intron	inversion/3'-3'	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2081),FP236383.3(121629)	FP236383.3	./.	+/.	21:8259014	21:8401911	intergenic	intron	inversion	0	0	0	5911	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8401911	21:8442049	intron	intron	inversion/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214785	21:8401911	intron	intron	inversion/3'-3'	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2081),FP236383.3(121629)	FP236383.3	./.	+/.	21:8259014	21:8446142	intergenic	intron	inversion	0	0	0	5911	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8442049	21:8446142	intron	intron	inversion/3'-3'	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214785	21:8446142	intron	intron	inversion/3'-3'	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LYPD6(60748),MMADHC(34751)	AC023141.7(3842403),AC128676.1(595912)	./.	./.	2:149534886	7:61679449	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC079949.3	FP236383.3	+/.	+/.	12:127165976	21:8397819	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000286016	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262468	6:42262481	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
CFAP58	DRD2(32215),TMPRSS5(179641)	+/.	./.	10:104396393	11:113507906	intron	intergenic	translocation	0	0	0	561	1	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy(4)	.	.	.
LINC02441(3703),AC140121.1(21253)	ZNF444	./.	+/.	12:128030869	19:56147471	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000167685	.	.	upstream	downstream	mismatches(1)	.	.	.
AC100827.1	DLGAP2	+/+	+/-	15:72640067	8:1553476	exon	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000259909	ENSG00000198010	.	.	downstream	downstream	mismatches(1)	.	.	.
DLGAP2	NLRP7	+/.	-/.	8:1553476	19:54942331	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000198010	ENSG00000167634	.	.	downstream	downstream	mismatches(1)	.	.	.
LRP2	DSCAM	-/.	-/.	2:169165140	21:40468317	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000081479	ENSG00000171587	.	.	downstream	downstream	mismatches(1)	.	.	.
PDE4D	DSCAM	-/.	-/.	5:59865935	21:40468302	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000113448	ENSG00000171587	.	.	upstream	upstream	mismatches(1)	.	.	.
PDE4D	OSBPL1A	-/.	-/.	5:59865935	18:24391113	intron	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000113448	ENSG00000141447	.	.	upstream	downstream	mismatches(1)	.	.	.
CPNE4	EBF2	-/.	-/.	3:131956182	8:26038601	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196353	ENSG00000221818	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8215023	21:8394736	intron	intron	deletion/read-through	0	0	0	4	154	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2319),FP236383.3(121391)	FP236383.3	./.	+/.	21:8259252	21:8438949	intergenic	intron	deletion/read-through	0	0	0	1	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	21:8215023	21:8255907	intron	intergenic	deletion/read-through	0	0	0	4	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NELFB	AC005244.2(158893),AC084167.1(16578)	+/+	./-	9:137256935	17:12374160	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	Cofactor_of_BRCA1_(COBRA1)(11%)|	.	.	ENSG00000188986	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HDGFL2	LINC00692(18213),RPEP2(123708)	+/+	./+	19:4491832	3:25891961	CDS	intergenic	translocation	0	0	0	2	0	low	.	.	PWWP_domain(100%)|	.	.	ENSG00000167674	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
HDGFL2	ATR	+/+	-/-	19:4491833	3:142462337	CDS/splice-site	intron	translocation	0	0	0	2	4	low	.	.	PWWP_domain(100%)|FATC_domain(100%),Phosphatidylinositol_3-_and_4-kinase(90%)	.	.	ENSG00000167674	ENSG00000175054	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK11B	ZMAT4	-/.	-/.	1:1642227	8:40593934	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000248333	ENSG00000165061	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK11A	ZMAT4	-/.	-/.	1:1709359	8:40593934	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000008128	ENSG00000165061	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK11B	MRPS6	-/.	+/.	1:1642227	21:34109348	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000248333	ENSG00000243927	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK11B	AC087235.1(245262),SOX5(32743)	-/.	./.	1:1642227	12:23496761	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000248333	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL031282.2	AC087235.1(245262),SOX5(32743)	-/.	./.	1:1709359	12:23496761	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000268575	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK11A	AC087235.1(245262),SOX5(32743)	-/.	./.	1:1709359	12:23496761	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000008128	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL031282.2	LRRC55(22110),APLNR(19750)	-/.	./.	1:1709359	11:57213827	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000268575	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010591.1(56478),AC008725.1(36505)	UBR2	./.	+/.	5:155454831	6:42647927	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000024048	.	.	downstream	upstream	mismatches(1)	.	.	.
MYLK	AC020978.5	-/.	-/.	3:123671392	16:68227387	intron	exon	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000065534	ENSG00000262160	.	.	upstream	downstream	mismatches(1)	.	.	.
NFATC3	MYLK	+/+	-/+	16:68227387	3:123671392	3'UTR	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	Rel_homology_DNA-binding_domain(100%),Rel_homology_dimerisation_domain(100%)|	.	.	ENSG00000072736	ENSG00000065534	.	.	downstream	upstream	mismatches(1)	.	.	.
AC011815.1	SMUG1(12416),CBX5(29518)	-/-	./-	18:35290169	12:54201424	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000268573	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL603840.1	AL020994.2	+/.	+/.	1:55693669	22:27379081	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234810	ENSG00000230051	.	.	upstream	upstream	mismatches(1)	.	.	.
AL603840.1	MED25	+/.	+/.	1:55693669	19:49835137	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234810	ENSG00000104973	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785679	intron	intron	translocation	0	0	0	144	466	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	10:44886340	10:44886353	intron	intron	duplication/ITD	0	0	0	12	2	low	.	.	.	.	.	ENSG00000224812	ENSG00000224812	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SLC15A5	SLC15A5	-/.	-/.	12:16193773	12:16193842	intron	intron	duplication/ITD	0	0	0	28	22	low	.	.	.	.	.	ENSG00000188991	ENSG00000188991	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PDE1C	PDE1C	-/.	-/.	7:32298003	7:32298012	intron	intron	duplication/ITD	0	0	0	10	9	low	.	.	.	.	.	ENSG00000154678	ENSG00000154678	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MFSD9	FP236383.3	-/.	+/.	2:102719363	21:8399899	intron	intron	translocation/3'-3'	0	0	0	4	19	low	.	.	.	.	.	ENSG00000135953	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MFSD9	FP671120.4	-/.	+/.	2:102719363	21:8216865	intron	intron	translocation/3'-3'	0	0	0	4	1	low	.	.	.	.	.	ENSG00000135953	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA1614	PDS5A	+/.	-/.	1:180940998	4:39875783	intron	intron	translocation/3'-3'	0	0	0	2	11	low	.	.	.	.	.	ENSG00000135835	ENSG00000121892	.	.	upstream	downstream	mismatches(1)	.	.	.
PDS5A	FP236383.3	-/.	+/.	4:39875783	21:8444134	intron	intron	translocation/3'-3'	0	0	0	11	19	low	.	.	.	.	.	ENSG00000121892	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PDS5A	FP236383.3	-/.	+/.	4:39875783	21:8399899	intron	intron	translocation/3'-3'	0	0	0	11	19	low	.	.	.	.	.	ENSG00000121892	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
WDFY3	WDFY3	-/.	-/.	4:84695490	4:84695552	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000163625	ENSG00000163625	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MTHFD1L	MTHFD1L	+/.	+/.	6:151069242	6:151069281	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000120254	ENSG00000120254	.	.	upstream	downstream	low_entropy(1)	.	.	.
AGAP1	HOOK2	+/+	-/-	2:235919144	19:12763779	intron	intron	translocation	0	0	0	0	0	low	.	.	Ras_family(100%)|HOOK_protein_coiled-coil_region(17%)	.	.	ENSG00000157985	ENSG00000095066	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479787	10:104479803	intron	intron	duplication/ITD	0	0	0	1798	110	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SFN(3793),GPN2(7883)	SFN(3852),GPN2(7824)	./.	./.	1:26868249	1:26868308	intergenic	intergenic	duplication/ITD	0	0	0	80	79	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC015631.1	PRMT8(959),CRACR2A(11701)	-/.	./.	4:133867492	12:3594932	intergenic	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000251199	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824768	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
SEMA5B(2023),PDIA5(36397)	SEMA5B(2032),PDIA5(36388)	./.	./.	3:123030628	3:123030637	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916413	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916403	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916406	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916408	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916409	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916411	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916400	2:32916556	intron	intron	inversion/3'-3'	0	0	0	55	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
AC114300.1(164789),AC099517.1(14704)	LINC02400(17855),AC090630.1(37372)	./.	./.	5:30530473	12:41792526	intergenic	intergenic	translocation	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PDCD6-AHRR	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	5:282264	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000288622	.	.	.	upstream	upstream	mismatches	.	.	.
PDCD6	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	5:282264	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000249915	.	.	.	upstream	upstream	mismatches	.	.	.
AC021087.5	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	5:282264	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000286001	.	.	.	upstream	upstream	mismatches	.	.	.
5_8S_rRNA(2079),FP236383.3(121631)	GRIK1(69580),AF096876.1(80104)	./.	./.	21:8259012	21:30009613	intergenic	intergenic	inversion	0	0	0	5911	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AC021087.5	FP236383.3	+/.	+/.	5:282264	21:8442047	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000286001	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
FP236383.3	GRIK1(69580),AF096876.1(80104)	+/.	./.	21:8442047	21:30009613	intron	intergenic	inversion	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches	.	.	.
PDCD6-AHRR	FP671120.4	+/.	+/.	5:282264	21:8214783	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000288622	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
PDCD6	FP671120.4	+/.	+/.	5:282264	21:8214783	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000249915	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
PDCD6-AHRR	FP236383.3	+/.	+/.	5:282264	21:8397817	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000288622	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
PDCD6	FP236383.3	+/.	+/.	5:282264	21:8397817	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000249915	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
AC021087.5	FP236383.3	+/.	+/.	5:282264	21:8397817	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000286001	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
LPP	AC113414.1	+/.	-/.	3:188514131	5:162956877	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145012	ENSG00000254186	.	.	downstream	upstream	mismatches(1)	.	.	.
GRB10(6412),AC004920.1(39489)	AF117829.1	./.	-/.	7:50799874	8:89757719	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000251136	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8213244	21:8438952	intron	intron	deletion/read-through	0	0	0	3	139	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.7(396),5_8S_rRNA(871)	+/.	./.	21:8213244	21:8255910	intron	intergenic	deletion/read-through	0	0	0	3	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK14	FP671120.4	+/+	+/-	7:91209432	21:8211722	3'UTR	intron	translocation/5'-5'	0	0	0	5	136	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000058091	ENSG00000278996	.	.	downstream	downstream	mismatches	.	.	.
DPP10	FP236383.3	+/.	+/.	2:114672372	21:8394757	intron	intron	translocation/5'-5'	0	0	0	5	182	low	.	.	.	.	.	ENSG00000175497	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
NEBL	FP236383.3	-/.	+/.	10:20893508	21:8394757	intron	intron	translocation/5'-5'	0	0	0	0	182	low	.	.	.	.	.	ENSG00000078114	ENSG00000280441	.	.	upstream	downstream	mismatches	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262582	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
CDK14	FP236383.3	+/+	+/-	7:91209432	21:8394757	3'UTR	intron	translocation/5'-5'	0	0	0	5	182	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000058091	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
DPP10	DDB2	+/.	+/.	2:114672372	11:47233086	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000175497	ENSG00000134574	.	.	downstream	upstream	mismatches	.	.	.
LYPD6(60748),MMADHC(34751)	KRT8P17(4589204),SSBL2P(203913)	./.	./.	2:149534886	X:62575337	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
NEBL	DDB2	-/.	+/.	10:20893508	11:47233086	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000078114	ENSG00000134574	.	.	upstream	upstream	mismatches	.	.	.
DPP10	FP236383.3	+/.	+/.	2:114672372	21:8438970	intron	intron	translocation/5'-5'	0	0	0	5	159	low	.	.	.	.	.	ENSG00000175497	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
YWHAZ	FP236383.3	-/.	+/.	8:100917283	21:8438970	3'UTR	intron	translocation	0	0	0	5	159	low	.	.	.	.	.	ENSG00000164924	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
CDK14	FP236383.3	+/+	+/-	7:91209432	21:8438970	3'UTR	intron	translocation/5'-5'	0	0	0	5	159	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000058091	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
DPP10	FP671120.7(414),5_8S_rRNA(853)	+/.	./.	2:114672372	21:8255928	intron	intergenic	translocation	0	0	0	5	143	low	.	.	.	.	.	ENSG00000175497	.	.	.	downstream	downstream	mismatches	.	.	.
CDK14	FP671120.7(414),5_8S_rRNA(853)	+/+	./-	7:91209432	21:8255928	3'UTR	intergenic	translocation	0	0	0	5	143	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000058091	.	.	.	downstream	downstream	mismatches	.	.	.
FXNP1(22669),NRXN3(87426)	FXNP1(22683),NRXN3(87412)	./.	./.	14:78082947	14:78082961	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22709),NRXN3(87386)	./.	./.	14:78082946	14:78082987	intergenic	intergenic	duplication/ITD	0	0	0	336	336	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BICC1	AP000829.1	+/.	+/.	10:58688003	18:990876	intron	intron	translocation/5'-5'	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000263551	.	.	downstream	downstream	homopolymer(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092353	11:88092444	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479812	10:104479903	intron	intron	duplication/ITD	0	0	0	2200	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC004540.1	LRRC4C	+/.	-/.	7:26469983	11:41021153	intron	intron	translocation/5'-5'	0	0	0	20	632	low	.	.	.	.	.	ENSG00000214870	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4375),AP001994.1(77306)	AP003390.1(4384),AP001994.1(77297)	./.	./.	11:119743998	11:119744007	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMC4	LINC01776	-/-	+/+	19:54168416	1:98227890	exon	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167608	ENSG00000226053	.	.	upstream	upstream	homopolymer(1)	.	.	.
DNM3	CHMP4B(17847),TPM3P2(40110)	+/+	./-	1:171841776	20:33872213	CDS	intergenic	translocation	0	0	0	1	2	low	.	.	Dynamin_family(4%)|	.	.	ENSG00000197959	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01776	TLE4	+/.	+/.	1:98227891	9:79572888	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000226053	ENSG00000106829	.	.	upstream	downstream	homopolymer(1)	.	.	.
LINC01776	CHTF18	+/.	+/.	1:98227890	16:795868	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000226053	ENSG00000127586	.	.	upstream	downstream	homopolymer(1)	.	.	.
P2RX4	LINC00558(153239),LINC00458(22584)	+/+	./-	12:121209959	13:54093199	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135124	.	.	.	downstream	downstream	mismatches(1)	.	.	.
INPP4B	LINC00558(153240),LINC00458(22583)	-/.	./.	4:142832768	13:54093200	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109452	.	.	.	downstream	downstream	mismatches(1)	.	.	.
INPP4B	AC092066.1(2377),CBLC(10028)	-/.	./.	4:142832768	19:44767841	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109452	.	.	.	downstream	upstream	mismatches(1)	.	.	.
IQSEC1	AC092066.1(2375),CBLC(10030)	-/.	./.	3:13200293	19:44767839	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000144711	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
IQSEC1	ALOX15(16236),PELP1(11244)	-/.	./.	3:13200293	17:4658530	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000144711	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
IQSEC1	CHTF18	-/.	+/.	3:13200293	16:795868	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000144711	ENSG00000127586	.	.	downstream	downstream	homopolymer(1)	.	.	.
TMC4	RN7SL423P(28136),AC009313.1(142620)	-/-	./-	19:54168416	2:160905986	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167608	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
RN7SL423P(28136),AC009313.1(142620)	CHTF18	./.	+/.	2:160905986	16:795868	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000127586	.	.	downstream	downstream	homopolymer(1)	.	.	.
MIR100HG	AC092066.1(2375),CBLC(10030)	-/-	./+	11:122100667	19:44767839	exon	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000255248	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
MIR100HG	TMC4	-/-	-/+	11:122100667	19:54168416	exon	exon	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000255248	ENSG00000167608	.	.	upstream	upstream	homopolymer(1)	.	.	.
MIR100HG	TLE4	-/-	+/-	11:122100668	9:79572888	exon	intron	translocation/5'-5'	0	0	0	0	12	low	.	.	.	.	.	ENSG00000255248	ENSG00000106829	.	.	upstream	downstream	homopolymer(1)	.	.	.
MIR100HG	CHTF18	-/-	+/-	11:122100667	16:795868	exon	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000255248	ENSG00000127586	.	.	upstream	downstream	homopolymer(1)	.	.	.
NAA15	LINC00558(153240),LINC00458(22583)	+/.	./.	4:139380259	13:54093200	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000164134	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NAA15	AC092066.1(2375),CBLC(10030)	+/.	./.	4:139380261	19:44767839	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000164134	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
NAA15	ALOX15(16236),PELP1(11244)	+/.	./.	4:139380261	17:4658530	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000164134	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
TMC4	NAA15	-/-	+/+	19:54168416	4:139380261	exon	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167608	ENSG00000164134	.	.	upstream	upstream	homopolymer(1)	.	.	.
NAA15	TLE4	+/.	+/.	4:139380262	9:79572888	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000164134	ENSG00000106829	.	.	upstream	downstream	homopolymer(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479892	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
DNAH14	AP003390.1(4476),AP001994.1(77205)	+/.	./.	1:225078904	11:119744099	intron	intergenic	translocation	0	0	0	144	3711	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
AC069240.1(34723),OSTF1P1(3619)	PIGA(3814),VEGFD(6228)	./.	./.	12:114584575	X:15339368	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ALPK1	FP671120.4	+/.	+/.	4:112302315	21:8206536	intron	intron	translocation	0	0	0	7	9	low	.	.	.	.	.	ENSG00000073331	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ALPK1	UGT8	+/.	+/.	4:112302315	4:114600046	intron	intron	inversion/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000073331	ENSG00000174607	.	.	downstream	downstream	mismatches(1)	.	.	.
ALPK1	AC040970.1	+/.	-/.	4:112302315	8:141129024	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000073331	ENSG00000253210	.	.	downstream	upstream	mismatches(1)	.	.	.
ALPK1	DENND3	+/.	+/.	4:112302315	8:141129024	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000073331	ENSG00000105339	.	.	downstream	upstream	mismatches(1)	.	.	.
DPH5	PIGA(3814),VEGFD(6228)	-/.	./.	1:100996758	X:15339368	intron	intergenic	translocation	0	0	0	1	2	low	.	.	.	.	.	ENSG00000117543	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC016168.4	ALPK1	-/-	+/-	17:76840866	4:112302315	exon	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000287836	ENSG00000073331	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4493),AP001994.1(77188)	+/.	./.	10:104396370	11:119744116	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	AP003390.1(4487),AP001994.1(77194)	+/.	./.	10:104396370	11:119744110	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	AP003390.1(4481),AP001994.1(77200)	+/.	./.	10:104396370	11:119744104	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479897	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479893	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	AP003390.1(4499),AP001994.1(77182)	+/.	./.	10:104396370	11:119744122	intron	intergenic	translocation	0	0	0	558	3002	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	AP003390.1(4497),AP001994.1(77184)	+/.	./.	10:104396370	11:119744120	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	AP003390.1(4495),AP001994.1(77186)	+/.	./.	10:104396370	11:119744118	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	duplicates	.	.	.
CFAP58	AP003390.1(4477),AP001994.1(77204)	+/.	./.	10:104396370	11:119744100	intron	intergenic	translocation	0	0	0	558	3711	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	AIRE(397),PFKL(1006)	+/.	./.	2:32916401	21:44299045	intron	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000230876	.	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	LINC00836(23610),RNA5SP306(57266)	+/.	./.	2:32916401	10:25756545	intron	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000230876	.	.	.	upstream	upstream	mismatches	.	.	.
AC073172.1	XPO6(20),GAPDHP35(27708)	-/.	./.	11:15619572	16:28211985	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000254789	.	.	.	upstream	upstream	mismatches(1)	.	.	.
XPO6(20),GAPDHP35(27708)	TRIOBP	./.	+/.	16:28211985	22:37735592	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100106	.	.	upstream	upstream	mismatches(1)	.	.	.
AL009177.1	MAML2	+/.	-/.	6:14487262	11:96068509	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000286277	ENSG00000184384	.	.	upstream	downstream	mismatches(1)	.	.	.
AL009177.1	USP3-AS1	+/.	-/.	6:14487262	15:63547864	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000286277	ENSG00000259248	.	.	upstream	downstream	mismatches(1)	.	.	.
AL009177.1	USP3	+/.	+/.	6:14487262	15:63547864	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000286277	ENSG00000140455	.	.	upstream	downstream	mismatches(1)	.	.	.
AL009177.1	SLC13A3	+/.	-/.	6:14487262	20:46563634	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000286277	ENSG00000158296	.	.	upstream	downstream	mismatches(1)	.	.	.
AL009177.1	PLS3	+/.	+/.	6:14487262	X:115594621	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286277	ENSG00000102024	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC27P1(3880),AC097532.1(18873)	AL009177.1	./.	+/.	2:132266922	6:14487262	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000286277	.	.	downstream	upstream	mismatches(1)	.	.	.
PRKN	AP000445.2(7169),TMA16P1(28015)	-/.	./.	6:162063547	11:58768222	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000185345	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP000445.2(7167),TMA16P1(28017)	RPL9P29(153),TIMP2(5956)	./.	./.	11:58768220	17:78847021	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01220(4885),AF111167.2(120689)	MT-RNR2	./.	+/.	14:75302994	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DNAH6	MT-RNR2	+/.	+/.	2:84691963	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000115423	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SLC35F4	MT-RNR2	-/.	+/.	14:57882704	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000151812	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC004890.2(12068),AC004941.2(12485)	MT-RNR2	./.	+/.	7:149309380	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL353705.1(19740),AL353705.3(18687)	MT-RNR2	./.	+/.	9:78200433	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RSL24D1P5(14786),AVPR1A(72208)	MT-RNR2	./.	+/.	12:63070551	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GDF3	MT-RNR2	-/.	+/.	12:7694132	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000184344	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NR4A2	MT-RNR2	-/.	+/.	2:156327393	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000153234	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC025033.1(15636),GFM1(2042)	MT-RNR2	./.	+/.	3:158642485	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RPA1	MT-RNR2	+/.	+/.	17:1873100	MT:2224	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000132383	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC013437.1	AL161941.1	-/.	-/.	2:143162904	20:16210797	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000257284	ENSG00000287410	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GDF15	LONRF3	+/.	+/.	19:18380295	X:119016207	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130513	ENSG00000175556	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP15	AC025822.2	+/.	+/.	2:143162905	10:4054538	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000075884	ENSG00000236990	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC025822.2	GDF15	+/.	+/.	10:4054540	19:18380295	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000236990	ENSG00000130513	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC073957.1	GDF15	+/.	+/.	7:1042568	19:18380295	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225146	ENSG00000130513	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PM20D1	AC013437.1	-/.	-/.	1:205836422	2:143162904	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162877	ENSG00000257284	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC119673.2	AC013437.1	+/.	-/.	1:205836422	2:143162904	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286619	ENSG00000257284	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PHF12	SLC4A11	-/-	-/-	17:28912771	20:3233552	CDS	CDS	translocation	0	0	0	0	1	low	.	.	PHD-finger(100%),PHD_finger_protein_12_MRG_binding_domain(100%)|HCO3-_transporter_family(100%)	.	.	ENSG00000109118	ENSG00000088836	.	.	upstream	downstream	mismatches(1)	.	.	.
AC135050.4	GDF15	+/.	+/.	16:31066078	19:18380281	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261124	ENSG00000130513	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF668	GDF15	-/.	+/.	16:31066078	19:18380281	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167394	ENSG00000130513	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP15	ATG5	+/.	-/.	2:143162905	6:106192794	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075884	ENSG00000057663	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC013437.1	AC108452.1(6360),AC100781.1(656436)	-/.	./.	2:143162904	18:37998773	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000257284	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC108452.1(6361),AC100781.1(656435)	GDF15	./.	+/.	18:37998774	19:18380295	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000130513	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PM20D1	GDF15	-/.	+/.	1:205836421	19:18380295	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162877	ENSG00000130513	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KDM4C	AL132986.1(43549),ZFP36L1(7433)	+/.	./.	9:7086288	14:68780227	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KDM4C	CLIC6	+/.	+/.	9:7086288	21:34698541	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	ENSG00000159212	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104619.1(48475),AC104619.3(44100)	KDM4C	./.	+/.	4:135001364	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
AC021678.2	KDM4C	-/.	+/.	8:28315787	9:7086288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253690	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
F3(12807),AC093117.1(30990)	KDM4C	./.	+/.	1:94554566	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
AC068533.3	KDM4C	-/.	+/.	7:66152065	9:7086288	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234185	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
CRCP	KDM4C	+/.	+/.	7:66152065	9:7086288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241258	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
AC068533.4	KDM4C	+/.	+/.	7:66152065	9:7086288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249319	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
MACROH2A1	KDM4C	-/-	+/+	5:135360613	9:7086288	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(100%)|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-zinc-finger_like_domain(50%)	.	.	ENSG00000113648	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
KDM4C	Y_RNA(17585),FAM27E3(2639)	+/.	./.	9:7086288	9:67714772	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KDM4C	AL391987.4	+/.	-/.	9:7086288	9:61866041	intron	exon	duplication/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	ENSG00000235659	.	.	upstream	downstream	mismatches(1)	.	.	.
KDM4C	BAIAP2L2	+/.	-/.	9:7086289	22:38104452	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	ENSG00000128298	.	.	upstream	upstream	mismatches(1)	.	.	.
KDM4C	AL591926.2	+/.	-/.	9:7086288	9:41652078	intron	exon	duplication/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	ENSG00000276412	.	.	upstream	downstream	mismatches(1)	.	.	.
KDM4C	Y_RNA(19631),FRG1KP(53856)	+/.	./.	9:7086288	9:65593126	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KDM4C	LINC01597	+/.	-/.	9:7086288	20:30287436	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	ENSG00000205611	.	.	upstream	downstream	mismatches(1)	.	.	.
KDM4C	BAIAP2	+/.	+/.	9:7086288	17:81064775	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	ENSG00000175866	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM85B	KDM4C	-/.	+/.	8:8193628	9:7086288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253893	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
ENPP7P1	KDM4C	+/.	+/.	8:8193628	9:7086288	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249188	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
ENPP7P6	KDM4C	-/.	+/.	8:12472042	9:7086288	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255549	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
ATP6V0E1P4(88288),LINC01738(49422)	KDM4C	./.	+/.	1:47639041	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR297(17860),LYPLA1P2(66602)	KDM4C	./.	+/.	4:110878507	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
KDM4C	AL512357.2(21463),AL512357.1(60146)	+/.	./.	9:7086288	14:104316384	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SPRY4-AS1	KDM4C	+/.	+/.	5:142441249	9:7086288	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231185	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM163	KDM4C	-/.	+/.	2:134494132	9:7086289	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152128	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP001823.1(3438),ELMOD1(750)	./.	./.	3:137274346	11:107590341	intergenic	intergenic	translocation	0	0	0	71	1914	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479908	X:133661640	intron	intron	translocation/3'-3'	0	0	0	1761	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	duplicates	.	.	.
IL20RB(263261),RNA5SP142(243788)	LINC02620	./.	-/.	3:137274346	10:104479914	intergenic	intron	translocation	0	0	0	71	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
IL20RB(263261),RNA5SP142(243788)	LINC02620	./.	-/.	3:137274346	10:104479908	intergenic	intron	translocation	0	0	0	71	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AP001823.1(3432),ELMOD1(756)	GPC3	./.	-/.	11:107590335	X:133661640	intergenic	intron	translocation	0	0	0	1909	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
IL20RB(263261),RNA5SP142(243788)	LINC02620	./.	-/.	3:137274346	10:104479904	intergenic	intron	translocation	0	0	0	71	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
MIR4300HG	GPC3	-/.	-/.	11:82143171	X:133661640	intron	intron	translocation/3'-3'	0	0	0	1095	143	low	.	.	.	.	.	ENSG00000245832	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
UNC13C(125173),AC025272.1(298136)	FP236383.3	./.	+/.	15:54758587	21:8400582	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	MIR4300HG	./.	-/.	3:137274346	11:82143171	intergenic	intron	translocation	0	0	0	71	1095	low	.	.	.	.	.	.	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4502),AP001994.1(77179)	./.	./.	3:137274346	11:119744125	intergenic	intergenic	translocation	0	0	0	71	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AP003390.1(4500),AP001994.1(77181)	GPC3	./.	-/.	11:119744123	X:133661640	intergenic	intron	translocation	0	0	0	3002	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4498),AP001994.1(77183)	GPC3	./.	-/.	11:119744121	X:133661640	intergenic	intron	translocation	0	0	0	3002	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4496),AP001994.1(77185)	./.	./.	3:137274346	11:119744119	intergenic	intergenic	translocation	0	0	0	71	3583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4494),AP001994.1(77187)	./.	./.	3:137274346	11:119744117	intergenic	intergenic	translocation	0	0	0	71	3583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AP003390.1(4492),AP001994.1(77189)	GPC3	./.	-/.	11:119744115	X:133661640	intergenic	intron	translocation	0	0	0	3583	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4492),AP001994.1(77189)	./.	./.	3:137274346	11:119744115	intergenic	intergenic	translocation	0	0	0	71	3583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AP003390.1(4490),AP001994.1(77191)	GPC3	./.	-/.	11:119744113	X:133661640	intergenic	intron	translocation	0	0	0	3583	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
AP001823.1(3430),ELMOD1(758)	GPC3	./.	-/.	11:107590333	X:133661640	intergenic	intron	translocation	0	0	0	1909	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4488),AP001994.1(77193)	./.	./.	3:137274346	11:119744111	intergenic	intergenic	translocation	0	0	0	71	3583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AP003390.1(4506),AP001994.1(77175)	GPC3	./.	-/.	11:119744129	X:133661640	intergenic	intron	translocation	0	0	0	3002	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4506),AP001994.1(77175)	./.	./.	3:137274346	11:119744129	intergenic	intergenic	translocation	0	0	0	71	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP001823.1(3442),ELMOD1(746)	./.	./.	3:137274346	11:107590345	intergenic	intergenic	translocation	0	0	0	71	1914	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AP001823.1(3440),ELMOD1(748)	GPC3	./.	-/.	11:107590343	X:133661640	intergenic	intron	translocation	0	0	0	1914	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP001823.1(3440),ELMOD1(748)	./.	./.	3:137274346	11:107590343	intergenic	intergenic	translocation	0	0	0	71	1914	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
TYRO3(16298),AC016134.1(9570)	TYRO3(16366),AC016134.1(9502)	./.	./.	15:41599887	15:41599955	intergenic	intergenic	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL136456.1	LINC02225(171108),LINC02101(37361)	+/.	./.	1:193927797	5:58070270	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227240	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL136456.1	FP671120.7(145),5_8S_rRNA(1122)	+/.	./.	1:193927797	21:8255659	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000227240	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL136456.1	FP236383.3	+/.	+/.	1:193927797	21:8438699	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000227240	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262470	6:42262485	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NOTCH2(12178),RNU6-465P(14017)	LSM14B	./.	+/.	1:120112957	20:62131774	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	mismatches(1)	.	.	.
AC136297.1(13056),LINC02689(235)	PDXDC2P	./.	-/.	11:1350124	16:70012585	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255185	.	.	upstream	downstream	mismatches(1)	.	.	.
AC136297.1(13056),LINC02689(235)	PDXDC2P-NPIPB14P	./.	-/.	11:1350124	16:70012585	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000196696	.	.	upstream	downstream	mismatches(1)	.	.	.
NOTCH2NLB(44939),RNU6-1171P(14661)	BX284632.1(7530),BMS1P13(3118)	./.	./.	1:148724718	9:65825002	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
NOTCH2(12179),RNU6-465P(14016)	BX284632.1(7530),BMS1P13(3118)	./.	./.	1:120112958	9:65825002	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
BTBD2	PITPNC1	-/-	+/+	19:1991134	17:67441273	exon	intron	translocation	0	0	0	0	0	low	.	.	BTB/POZ_domain(100%),BTB_And_C-terminal_Kelch(2%)|Phosphatidylinositol_transfer_protein(93%)	.	.	ENSG00000133243	ENSG00000154217	.	.	upstream	upstream	mismatches(1)	.	.	.
AC016820.1(173235),ZMIZ1-AS1(73071)	PDXDC1	./.	+/.	10:78870257	16:15028224	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000179889	.	.	upstream	upstream	mismatches(1)	.	.	.
AC239799.1(36127),RNU6-1071P(14662)	NF1	./.	+/.	1:146273934	17:31130977	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000196712	.	.	downstream	upstream	mismatches(1)	.	.	.
NOTCH2NLB(44938),RNU6-1171P(14662)	NF1	./.	+/.	1:148724717	17:31130977	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000196712	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214785	21:8218872	intron	intron	inversion/3'-3'	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC239799.1(36127),RNU6-1071P(14662)	Y_RNA(92916),RNA5SP103(1238)	./.	./.	1:146273934	2:128443843	intergenic	intergenic	translocation	0	0	0	9	7	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH2NLB(44938),RNU6-1171P(14662)	Y_RNA(92916),RNA5SP103(1238)	./.	./.	1:148724717	2:128443843	intergenic	intergenic	translocation	0	0	0	4	7	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH2(12178),RNU6-465P(14017)	Y_RNA(92916),RNA5SP103(1238)	./.	./.	1:120112957	2:128443843	intergenic	intergenic	translocation	0	0	0	4	7	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC239799.1(36127),RNU6-1071P(14662)	COL6A1	./.	+/.	1:146273934	21:45986696	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000142156	.	.	downstream	upstream	mismatches(1)	.	.	.
NOTCH2(12178),RNU6-465P(14017)	COL6A1	./.	+/.	1:120112957	21:45986696	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000142156	.	.	downstream	upstream	mismatches(1)	.	.	.
AC239799.1(36127),RNU6-1071P(14662)	LSM14B	./.	+/.	1:146273934	20:62131774	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	mismatches(1)	.	.	.
AC016820.1(173235),ZMIZ1-AS1(73071)	PDXDC2P-NPIPB14P	./.	-/.	10:78870257	16:70012585	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000196696	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8398540	21:8444191	intron	intron	inversion/3'-3'	0	0	0	4	214	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MFAP3	FP236383.3	+/.	+/.	5:154131311	21:8399951	intron	intron	translocation/3'-3'	0	0	0	0	205	low	.	.	.	.	.	ENSG00000037749	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP000445.2(7169),TMA16P1(28015)	SYT1	./.	+/.	11:58768222	12:79198619	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000067715	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2802),FP236383.3(120908)	FP236383.3	./.	+/.	21:8259735	21:8399956	intergenic	intron	inversion	0	0	0	4	205	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8215506	21:8216922	intron	intron	inversion/3'-3'	0	0	0	2	10	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MFAP3	FP236383.3	+/.	+/.	5:154131311	21:8444186	intron	intron	translocation/3'-3'	0	0	0	0	214	low	.	.	.	.	.	ENSG00000037749	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02693	AC010320.4	-/-	-/-	17:21551447	19:52335072	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000212719	ENSG00000269535	.	.	upstream	downstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	AP000829.1	./.	+/.	2:218108703	18:990876	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000263551	.	.	downstream	downstream	homopolymer(1)	.	.	.
HDHD5-AS1(6340),ADA2(7005)	MAPK11	./.	-/.	22:17171785	22:50270476	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000185386	.	.	upstream	downstream	mismatches(1)	.	.	.
AL589645.1	MAPK11	+/.	-/.	9:34810172	22:50270475	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287368	ENSG00000185386	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396488	8:22396586	intron	intron	duplication/ITD	0	0	0	31	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(2)	.	.	.
FP671120.8(6244),MIR6724-2(2214)	FP671120.8(6259),MIR6724-2(2199)	./.	./.	21:8247291	21:8247306	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8430315	21:8430330	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275725	13:49275796	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3527),ELMOD1(661)	./.	./.	11:107590331	11:107590430	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC123784.1(48123),CRAT37(54264)	MYO9B	./.	+/.	15:91354444	19:17114842	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000099331	.	.	downstream	upstream	mismatches(1)	.	.	.
AC062015.1(35723),MIR5702(437616)	C16orf72(26880),RPL21P119(7887)	./.	./.	2:226221094	16:9148515	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLCO1C1	C16orf72(26880),RPL21P119(7887)	+/.	./.	12:20702648	16:9148515	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139155	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ATP6V0A4	C16orf72(26880),RPL21P119(7887)	-/.	./.	7:138789017	16:9148515	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000105929	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL29(29558),AC115284.3(21310)	KANK2(55),DOCK6(1449)	./.	./.	3:52025453	19:11197846	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC034187.1	KANK2(55),DOCK6(1449)	-/.	./.	3:8591032	19:11197846	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000224884	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025554.1(18509),RNU6-224P(141478)	MIR3924(82640),AL731534.1(125958)	./.	./.	4:131131764	10:57387199	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	LONRF2P2	+/.	+/.	2:32916556	13:18609479	intron	exon	translocation	0	0	0	47	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000233905	.	.	downstream	upstream	low_entropy	.	.	.
ZNF19	TAT-AS1(6224),AC009097.2(39297)	-/.	./.	16:71521081	16:71584411	intron	intergenic	deletion/read-through	0	0	0	45	5	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates	.	.	.
KMT2A	FP236383.3	+/.	+/.	11:118436772	21:8399660	CDS	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000118058	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CAMK1D	FP236383.3	+/.	+/.	10:12746140	21:8399661	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183049	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NDUFA4P1(65056),VAV3(657)	CAMK1D	./.	+/.	1:107570504	10:12746140	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000183049	.	.	downstream	downstream	mismatches(1)	.	.	.
KMT2A	AC011503.1(42920),RNA5-8SP4(3403)	+/.	./.	11:118436772	19:24000955	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000118058	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC143336.1(94795),AC025774.1(236686)	CAMK1D	./.	+/.	5:71851096	10:12746140	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000183049	.	.	upstream	downstream	mismatches(1)	.	.	.
KMT2A	FP236383.3	+/.	+/.	11:118436772	21:8443895	CDS	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000118058	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
KMT2A	5_8S_rRNA(3922),FP236383.3(119788)	+/.	./.	11:118436772	21:8260855	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000118058	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC000120.3	CHST15	-/.	-/.	7:92133978	10:124092273	intron	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000285953	ENSG00000182022	.	.	upstream	downstream	mismatches(1)	.	.	.
AC000120.2	CHST15	-/.	-/.	7:92133978	10:124092273	intron	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000285772	ENSG00000182022	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02173(48821),AC092445.1(23131)	MGMT(10289),LINC02666(3711)	./.	./.	4:106502270	10:129781272	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC000120.3	DNHD1	-/.	+/.	7:92133976	11:6586560	intron	intron	translocation/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000285953	ENSG00000179532	.	.	upstream	downstream	mismatches(1)	.	.	.
CHTF18	BX546450.1(36086),PASD1(11344)	+/.	./.	16:795868	X:151552331	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000127586	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC000120.2	DNHD1	-/.	+/.	7:92133976	11:6586560	intron	intron	translocation/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000285772	ENSG00000179532	.	.	upstream	downstream	mismatches(1)	.	.	.
ALPK1	FP671120.3(596),FP671120.7(3847)	+/.	./.	4:112302315	21:8250745	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000073331	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CYP51A1	DNHD1	-/.	+/.	7:92133976	11:6586560	intron	intron	translocation/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000001630	ENSG00000179532	.	.	upstream	downstream	mismatches(1)	.	.	.
LRRN2	LINC02173(48821),AC092445.1(23131)	-/.	./.	1:204685121	4:106502270	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000170382	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MET	DMBT1	+/.	+/.	7:116716343	10:122634480	intron	intron	translocation/5'-5'	0	0	0	22	8	low	.	.	.	.	.	ENSG00000105976	ENSG00000187908	.	.	downstream	downstream	low_entropy	.	.	.
MET	NGB	+/.	-/.	7:116716343	14:77269777	intron	intron	translocation	0	0	0	22	87	low	.	.	.	.	.	ENSG00000105976	ENSG00000165553	.	.	downstream	downstream	low_entropy	.	.	.
SFN(3785),GPN2(7891)	NGB	./.	-/.	1:26868241	14:77269777	intergenic	intron	translocation	0	0	0	80	87	low	.	.	.	.	.	.	ENSG00000165553	.	.	upstream	downstream	low_entropy	.	.	.
AC104123.1	LINC00558(153239),LINC00458(22584)	+/.	./.	5:96361270	13:54093199	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104123.1	FIGNL2	+/.	-/.	5:96361268	12:51846743	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	ENSG00000261308	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009226.1	AC104123.1	-/.	+/.	2:207335555	5:96361268	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000223725	ENSG00000251314	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009226.1	RTN1	-/.	-/.	2:207335556	14:59870262	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000223725	ENSG00000139970	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02459(32871),TBX5(79270)	RTN1	./.	-/.	12:114274641	14:59870262	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000139970	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	CLYBL	+/.	+/.	11:47233103	13:99830066	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000125246	.	.	downstream	upstream	mismatches(1)	.	.	.
CALML5(7456),CALML3-AS1(3010)	DDB2	./.	+/.	10:5507026	11:47233103	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
ESYT3	DDB2	+/.	+/.	3:138457508	11:47233103	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000158220	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	TSHZ2	./.	+/.	15:26358594	20:52972657	intergenic	5'UTR	translocation	0	0	0	71	2	low	.	.	.	.	.	.	ENSG00000182463	.	.	downstream	upstream	mismatches(1)	.	.	.
BARX1-DT(1429),PTPDC1(70225)	AP001599.1	./.	+/.	9:93960569	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
PHKB	FP236383.3	+/.	+/.	16:47502226	21:8400584	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000102893	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PHKB	FP236383.3	+/.	+/.	16:47502226	21:8444816	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000102893	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SMARCAL1	COMMD7	+/+	-/-	2:216451038	20:32718427	CDS	intron	translocation	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|COMM_domain(100%)	.	.	ENSG00000138375	ENSG00000149600	.	.	downstream	downstream	mismatches(1)	.	.	.
SMARCAL1	FO393400.1	+/+	-/-	2:216451038	20:32718427	CDS	intron	translocation	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|COMM_domain(100%)	.	.	ENSG00000138375	ENSG00000285382	.	.	downstream	downstream	mismatches(1)	.	.	.
GPANK1	COX14	-/-	+/+	6:31664756	12:50112288	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	|Cytochrome_oxidase_c_assembly(100%)	.	.	ENSG00000204438	ENSG00000178449	.	.	upstream	upstream	mismatches(1)	.	.	.
SMARCAL1	GPANK1	+/+	-/+	2:216451038	6:31664758	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|	.	.	ENSG00000138375	ENSG00000204438	.	.	downstream	upstream	mismatches(1)	.	.	.
CARD10	AC074032.1	-/-	+/+	22:37519499	12:50112288	5'UTR	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000100065	ENSG00000272368	.	.	upstream	upstream	mismatches(1)	.	.	.
CARD10	COX14	-/-	+/+	22:37519499	12:50112288	5'UTR	5'UTR	translocation	0	0	0	0	0	low	.	.	|Cytochrome_oxidase_c_assembly(100%)	.	.	ENSG00000100065	ENSG00000178449	.	.	upstream	upstream	mismatches(1)	.	.	.
Metazoa_SRP(5803),AC005256.1(17858)	AC074032.1	./+	+/+	19:1730198	12:50112288	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000272368	.	.	downstream	upstream	mismatches(1)	.	.	.
Metazoa_SRP(5803),AC005256.1(17858)	COX14	./+	+/+	19:1730198	12:50112288	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	|Cytochrome_oxidase_c_assembly(100%)	.	.	.	ENSG00000178449	.	.	downstream	upstream	mismatches(1)	.	.	.
SMARCAL1	AL157778.1	+/+	+/+	2:216451038	X:98582491	CDS	intron	translocation	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|	.	.	ENSG00000138375	ENSG00000281566	.	.	downstream	upstream	mismatches(1)	.	.	.
SMARCAL1	WDR59	+/+	-/-	2:216451038	16:74986485	CDS	intron	translocation	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|RING/Ubox_like_zinc-binding_domain(100%),WD_domain__G-beta_repeat(100%)	.	.	ENSG00000138375	ENSG00000103091	.	.	downstream	downstream	mismatches(1)	.	.	.
SMARCAL1	AC034229.2(3444),AC034229.4(2528)	+/+	./+	2:216451038	5:10201072	CDS	intergenic	translocation	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|	.	.	ENSG00000138375	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SMARCAL1	CARD10	+/+	-/+	2:216451038	22:37519501	CDS	5'UTR	translocation/5'-5'	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|	.	.	ENSG00000138375	ENSG00000100065	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7(392),5_8S_rRNA(875)	FP236383.3	./.	+/.	21:8255906	21:8444659	intergenic	intron	deletion/read-through	0	0	0	74	18	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211700	21:8400427	intron	intron	deletion/read-through	0	0	0	0	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7(392),5_8S_rRNA(875)	FP236383.3	./.	+/.	21:8255906	21:8400427	intergenic	intron	deletion/read-through	0	0	0	74	4	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211700	21:8444659	intron	intron	deletion/read-through	0	0	0	0	18	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392816	1:90392825	intron	intron	duplication/ITD	0	0	0	312	308	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479803	10:104479872	intron	intron	duplication/ITD	0	0	0	2200	2231	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP003390.1(4365),AP001994.1(77316)	AP003390.1(4379),AP001994.1(77302)	./.	./.	11:119743988	11:119744002	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC092100.1	AL136366.1	-/.	+/.	7:69204253	9:14320877	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000225718	ENSG00000225472	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092100.1	TRPM7	-/.	-/.	7:69204253	15:50661539	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000225718	ENSG00000092439	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092100.1	AL158058.2	-/.	-/.	7:69204253	14:29441681	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000225718	ENSG00000286040	.	.	downstream	upstream	mismatches(1)	.	.	.
NIM1K	AC092100.1	+/.	-/.	5:43278561	7:69204254	intron	intron	translocation/3'-3'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000177453	ENSG00000225718	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092100.1	RAD51B	-/.	+/.	7:69204253	14:68029213	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000225718	ENSG00000182185	.	.	downstream	downstream	mismatches(1)	.	.	.
MFHAS1	SLC8A1	-/-	-/-	8:8893384	2:40324047	5'UTR	intron	translocation	0	0	0	0	6	low	.	.	|Calx-beta_domain(20%),Sodium/calcium_exchanger_protein(48%)	.	.	ENSG00000147324	ENSG00000183023	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC8A1	BRD1(231),Z98885.2(4706)	-/.	./.	2:40324047	22:49827743	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000183023	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC8A1	AC025183.2(16914),IRX4(609)	-/.	./.	2:40324047	5:1876804	intron	intergenic	translocation	0	0	0	6	8	low	.	.	.	.	.	ENSG00000183023	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC8A1	PPP1R9B(275),AC015909.2(7381)	-/.	./.	2:40324047	17:50150952	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000183023	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UBE3C	GSE1	+/.	+/.	7:157250743	16:85176723	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000009335	ENSG00000131149	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	AP001994.1(6641),AP001994.2(4196)	+/.	./.	10:104396370	11:119828770	intron	intergenic	translocation	0	0	0	558	0	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	duplicates(12)	.	.	.
MTRNR2L8	IRAG1(23168),Y_RNA(8747)	-/-	./-	11:10508945	11:10717156	5'UTR	intergenic	deletion/read-through	0	0	0	1	1	low	.	.	Humanin_family(100%)|	.	.	ENSG00000255823	.	.	.	downstream	upstream	mismatches(1)	.	.	.
QSOX2	VCL	-/-	+/-	9:136245639	10:73998351	CDS	CDS	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000165661	ENSG00000035403	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5803),MAP7D2(15751)	+/.	./.	21:8444140	X:19990962	intron	intergenic	translocation	0	0	0	19	21	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5803),MAP7D2(15751)	+/.	./.	21:8399905	X:19990962	intron	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	Y_RNA(5803),MAP7D2(15751)	+/.	./.	21:8216871	X:19990962	intron	intergenic	translocation	0	0	0	1	21	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5806),MAP7D2(15748)	+/.	./.	21:8444140	X:19990965	intron	intergenic	translocation	0	0	0	19	21	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5791),MAP7D2(15763)	+/.	./.	21:8444140	X:19990950	intron	intergenic	translocation	0	0	0	19	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5794),MAP7D2(15760)	+/.	./.	21:8444140	X:19990953	intron	intergenic	translocation	0	0	0	19	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5797),MAP7D2(15757)	+/.	./.	21:8444140	X:19990956	intron	intergenic	translocation	0	0	0	19	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	Y_RNA(5797),MAP7D2(15757)	+/.	./.	21:8216871	X:19990956	intron	intergenic	translocation	0	0	0	1	18	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257369	16:24257428	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PHRF1	FP236383.3	+/.	+/.	11:589570	21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000070047	ENSG00000280441	.	.	upstream	upstream	duplicates(1)	.	.	.
MLYCD	FP671120.4	+/+	+/+	16:83922178	21:8214795	3'UTR	intron	translocation	0	0	0	0	5263	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	ENSG00000278996	.	.	downstream	upstream	duplicates(1)	.	.	.
MLYCD	FP236383.3	+/+	+/+	16:83922178	21:8397829	3'UTR	intron	translocation	0	0	0	0	1126	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
PHRF1	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	11:589570	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000070047	.	.	.	upstream	upstream	duplicates(1)	.	.	.
PTPRE	LETM1	+/+	-/-	10:127907308	4:1841523	5'UTR/splice-site	CDS	translocation	0	0	0	0	32	low	.	.	|LETM1-like__RBD(100%)	.	.	ENSG00000132334	ENSG00000168924	.	.	downstream	downstream	duplicates(1)	.	.	.
TTC34	AC114730.1	-/.	-/.	1:2688575	2:241734839	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000215912	ENSG00000215692	.	.	upstream	upstream	mismatches(1)	.	.	.
PHLDB2	PACS2	+/.	+/.	3:111953039	14:105385607	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000144824	ENSG00000179364	.	.	downstream	upstream	mismatches(1)	.	.	.
HYDIN2	ITGA7	+/.	-/.	1:146672712	12:55688738	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000135424	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC069288.1	PHACTR3	-/.	+/.	7:1874442	20:59836034	intron	5'UTR	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000286192	ENSG00000087495	.	.	downstream	upstream	mismatches(1)	.	.	.
MAD1L1	AC005865.1	-/.	-/.	7:1874424	12:3300367	intron	exon	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000002822	ENSG00000250770	.	.	upstream	downstream	mismatches(1)	.	.	.
CAP2	AC005865.1	+/.	-/.	6:17489897	12:3300367	intron	exon	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000112186	ENSG00000250770	.	.	downstream	downstream	mismatches(1)	.	.	.
CAP2	FBLN1	+/.	+/.	6:17489897	22:45588361	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112186	ENSG00000077942	.	.	downstream	upstream	mismatches(1)	.	.	.
NRG1(18726),RNU6-663P(37101)	CCDC178	./.	-/.	8:32874392	18:32975568	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1(81783),LINC02787(8731)	ABRAXAS2	./.	+/.	1:90502179	10:124822848	intergenic	intron	translocation	1	0	0	1	0	low	.	.	.	.	.	.	ENSG00000165660	.	.	upstream	downstream	min_support	.	.	.
LINC02116(867),AC025183.2(974)	ZNRF4(28006),TINCR(73305)	./.	./.	5:1857435	19:5484862	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC078815.1	ZNRF4(28006),TINCR(73305)	+/.	./.	12:64833529	19:5484862	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000288591	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
TBC1D30	ZNRF4(28006),TINCR(73305)	+/.	./.	12:64833529	19:5484862	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000111490	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AP003390.1(4506),AP001994.1(77175)	FXNP1(22671),NRXN3(87424)	./.	./.	11:119744129	14:78082949	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
AP003390.1(4512),AP001994.1(77169)	FXNP1(22671),NRXN3(87424)	./.	./.	11:119744135	14:78082949	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
AP000255.1(48520),TPT1P1(55414)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784927	21:31785031	intergenic	intergenic	duplication	0	0	0	220	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48526),TPT1P1(55408)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784933	21:31785031	intergenic	intergenic	duplication/ITD	0	0	0	220	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48481),TPT1P1(55453)	./.	./.	2:128340558	21:31784888	intergenic	intergenic	translocation	0	0	0	35	149	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48484),TPT1P1(55450)	./.	./.	2:128340558	21:31784891	intergenic	intergenic	translocation	0	0	0	35	149	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48487),TPT1P1(55447)	./.	./.	2:128340558	21:31784894	intergenic	intergenic	translocation	0	0	0	35	149	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
LINC02173(48821),AC092445.1(23131)	DNHD1	./.	+/.	4:106502270	11:6586560	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000179532	.	.	downstream	downstream	mismatches(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48508),TPT1P1(55426)	./.	./.	2:128340558	21:31784915	intergenic	intergenic	translocation	0	0	0	35	191	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
DNAH14	AP003390.1(4478),AP001994.1(77203)	+/.	./.	1:225078904	11:119744101	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48523),TPT1P1(55411)	./.	./.	2:128340558	21:31784930	intergenic	intergenic	translocation	0	0	0	35	220	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48526),TPT1P1(55408)	./.	./.	2:128340558	21:31784933	intergenic	intergenic	translocation	0	0	0	35	220	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48397),TPT1P1(55537)	./.	./.	2:128340558	21:31784804	intergenic	intergenic	translocation	0	0	0	35	90	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48394),TPT1P1(55540)	./.	./.	2:128340558	21:31784801	intergenic	intergenic	translocation	0	0	0	35	90	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AP000255.1(48484),TPT1P1(55450)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784891	21:31785031	intergenic	intergenic	duplication	0	0	0	149	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48397),TPT1P1(55537)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784804	21:31785031	intergenic	intergenic	duplication	0	0	0	90	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AP000255.1(48487),TPT1P1(55447)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784894	21:31785031	intergenic	intergenic	duplication	0	0	0	149	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48490),TPT1P1(55444)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784897	21:31785031	intergenic	intergenic	duplication	0	0	0	149	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48493),TPT1P1(55441)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784900	21:31785031	intergenic	intergenic	duplication	0	0	0	149	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48496),TPT1P1(55438)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784903	21:31785031	intergenic	intergenic	duplication	0	0	0	191	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48499),TPT1P1(55435)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784906	21:31785031	intergenic	intergenic	duplication	0	0	0	191	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48502),TPT1P1(55432)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784909	21:31785031	intergenic	intergenic	duplication	0	0	0	191	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48505),TPT1P1(55429)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784912	21:31785031	intergenic	intergenic	duplication	0	0	0	191	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AP000255.1(48508),TPT1P1(55426)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784915	21:31785031	intergenic	intergenic	duplication	0	0	0	191	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
KCNAB2	AP000851.1(293),AP000851.2(52947)	+/.	./.	1:6035979	11:102628363	exon	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000069424	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNAB2	DIP2B	+/.	+/.	1:6035979	12:50505157	exon	CDS	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000066084	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNAB2	AP001007.1	+/.	-/.	1:6035979	11:125263425	exon	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000254932	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNAB2	PKNOX2	+/.	+/.	1:6035979	11:125263425	exon	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000165495	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNAB2	IRAG1	+/.	-/.	1:6035979	11:10633735	exon	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000072952	.	.	upstream	upstream	mismatches(1)	.	.	.
RGL2	KCNAB2	-/-	+/+	6:33293882	1:6035979	CDS	exon	translocation	0	0	0	0	10	low	.	.	RasGEF_N-terminal_motif(100%),RasGEF_domain(100%)|Aldo/keto_reductase_family(100%)	.	.	ENSG00000237441	ENSG00000069424	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNAB2	SHISA9	+/.	+/.	1:6035979	16:13002424	exon	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000237515	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNAB2	BIN3	+/.	-/.	1:6035978	8:22668936	exon	intron	translocation	0	0	0	10	1	low	.	.	.	.	.	ENSG00000069424	ENSG00000147439	.	.	upstream	upstream	mismatches(1)	.	.	.
FBXW7	FBXW11	-/-	-/+	4:152411373	5:171914583	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109670	ENSG00000072803	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	DNAH17	+/.	-/.	2:32916484	17:78566311	intron	intron	translocation	0	0	0	17	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000187775	.	.	downstream	downstream	low_entropy	.	.	.
ARID1B	MAFG	+/.	-/.	6:156832463	17:81925418	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000049618	ENSG00000197063	.	.	upstream	downstream	mismatches(1)	.	.	.
ARID1B	AC019257.8	+/.	+/.	6:156832463	8:1809855	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000049618	ENSG00000283239	.	.	upstream	downstream	mismatches(1)	.	.	.
PHYH	LINC01426	-/-	+/-	10:13302064	21:34753529	5'UTR	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000107537	ENSG00000234380	.	.	upstream	downstream	mismatches(1)	.	.	.
TYRO3(16296),AC016134.1(9572)	TYRO3(16365),AC016134.1(9503)	./.	./.	15:41599885	15:41599954	intergenic	intergenic	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TCEANC2(9306),AL357673.1(10861)	LIN52(32941),VSX2(5273)	./.	./.	1:54121825	14:74234176	intergenic	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TCEANC2(9304),AL357673.1(10863)	KIAA2012-AS1	./.	-/.	1:54121823	2:202083777	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000222035	.	.	upstream	downstream	mismatches(1)	.	.	.
TCEANC2(9304),AL357673.1(10863)	KIAA2012	./.	+/.	1:54121823	2:202083777	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182329	.	.	upstream	downstream	mismatches(1)	.	.	.
KIAA2012	NUDCD3	+/.	-/.	2:202083777	7:44381493	intron	3'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000182329	ENSG00000015676	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA2012-AS1	AC063962.1(2643),KAT6B(154)	-/.	./.	2:202083777	10:74824773	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA2012	AC063962.1(2643),KAT6B(154)	+/.	./.	2:202083777	10:74824773	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2083),FP236383.3(121627)	OPHN1	./.	-/.	21:8259016	X:68289184	intergenic	intron	translocation	0	0	0	5911	4	low	.	.	.	.	.	.	ENSG00000079482	.	.	upstream	downstream	mismatches	.	.	.
KIAA2012	PPARGC1A(567576),DHX15(45776)	+/.	./.	2:202083777	4:24471665	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4500),AP001994.1(77181)	+/.	./.	1:225078862	11:119744123	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	AP001823.1(3432),ELMOD1(756)	+/.	./.	1:225078862	11:107590335	intron	intergenic	translocation	0	0	0	171	1909	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	upstream	mismatches	.	.	.
AF064860.1	AF064860.1	+/.	+/.	21:39679809	21:39679824	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000225330	ENSG00000225330	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262576	11:88092332	intron	intron	translocation	0	0	0	2136	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262574	11:88092332	intron	intron	translocation	0	0	0	2136	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262572	11:88092332	intron	intron	translocation	0	0	0	2136	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262596	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262594	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262588	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
AP005436.1	AP003390.1(4500),AP001994.1(77181)	-/.	./.	11:88092332	11:119744123	intron	intergenic	duplication	0	0	0	1166	3002	low	.	.	.	.	.	ENSG00000255102	.	.	.	upstream	downstream	low_entropy	.	.	.
AC124290.1(81829),MTCYBP19(4740)	FP671120.4	./.	+/.	8:36273023	21:8209832	intergenic	intron	translocation	0	0	0	5	48	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC124290.1(81829),MTCYBP19(4740)	FP236383.3	./.	+/.	8:36273023	21:8392867	intergenic	intron	translocation	0	0	0	5	43	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC124290.1(81829),MTCYBP19(4740)	FP236383.3	./.	+/.	8:36273023	21:8437077	intergenic	intron	translocation	0	0	0	5	55	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC01331(79559),ENC1(10871)	COL6A1	./.	+/.	5:74616535	21:45989306	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000142156	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01331(79559),ENC1(10871)	BRD3	./.	-/.	5:74616535	9:134042110	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000169925	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01331(79559),ENC1(10871)	HOXC11(3568),HOXC-AS3(298)	./.	./.	5:74616535	12:53981211	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4505),AP001994.1(77176)	GPC3	./.	-/.	11:119744128	X:133670137	intergenic	intron	translocation	0	0	0	3002	0	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy(1)	.	.	.
SEMA3F-AS1	FP671120.3(464),FP671120.7(3979)	-/.	./.	3:50146956	21:8250613	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000235016	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
RAB6B	FP671120.3(464),FP671120.7(3979)	-/.	./.	3:133828128	21:8250613	3'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000154917	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC004801.4(4165),AC004801.6(10150)	FP671120.3(464),FP671120.7(3979)	./.	./.	12:48029634	21:8250613	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
KIF5C	FP236383.3	+/.	+/.	2:149002076	21:8433639	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000168280	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SEMA3F-AS1	FP236383.3	-/.	+/.	3:50146956	21:8433638	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000235016	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
NOS1	MMP15	-/-	+/-	12:117265421	16:58046066	CDS	3'UTR	translocation/5'-5'	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	ENSG00000102996	.	.	upstream	downstream	mismatches(1)	.	.	.
NOS1	AC016991.1(31522),LINC00279(1248)	-/-	./+	12:117265421	Y:8549270	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RAB6B	FP236383.3	-/.	+/.	3:133828128	21:8433638	3'UTR	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000154917	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
SEMA3F-AS1	FP236383.3	-/.	+/.	3:50146956	21:8389451	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000235016	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
RAB6B	FP236383.3	-/.	+/.	3:133828128	21:8389451	3'UTR	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000154917	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC004801.4(4165),AC004801.6(10150)	FP236383.3	./.	+/.	12:48029634	21:8389451	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
KIF5C	FP671120.4	+/.	+/.	2:149002076	21:8206405	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000168280	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFYVE28	FP671120.4	-/.	+/.	4:2334332	21:8206405	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159733	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RAB6B	FP671120.4	-/.	+/.	3:133828128	21:8206404	3'UTR	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000154917	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC004801.4(4165),AC004801.6(10150)	FP236383.3	./.	+/.	12:48029634	21:8433638	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
BARX1-DT(1430),PTPDC1(70224)	DDB2	./.	+/.	9:93960570	11:47233103	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01731	AL049828.1	-/.	+/.	1:148280110	14:40229599	intron	intron	translocation	0	0	0	48	7	low	.	.	.	.	.	ENSG00000234283	ENSG00000258526	.	.	downstream	downstream	mismatches	.	.	.
NFU1P2(125288),LINC01776(7991)	PAXBP1(157),C21orf62-AS1(151)	./.	./.	1:98202756	21:32771949	intergenic	intergenic	translocation	0	0	0	6	466	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
NFU1P2(125288),LINC01776(7991)	NOS1AP	./.	+/.	1:98202756	1:162261547	intergenic	intron	inversion	0	0	0	6	6	low	.	.	.	.	.	.	ENSG00000198929	.	.	downstream	downstream	mismatches	.	.	.
NOS1AP	AL049828.1	+/.	+/.	1:162261547	14:40229599	intron	intron	translocation/5'-5'	0	0	0	6	7	low	.	.	.	.	.	ENSG00000198929	ENSG00000258526	.	.	downstream	downstream	mismatches	.	.	.
CHI3L1(25895),CHIT1(228)	MSH3	./.	+/.	1:203212599	5:80854005	intergenic	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	.	ENSG00000113318	.	.	upstream	downstream	mismatches(1)	.	.	.
MSH3	ARHGAP12(13247),RPL34P19(41762)	+/.	./.	5:80854005	10:31942123	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MSH3	CLUHP2(14492),FAM224A(27000)	+/.	./.	5:80854005	Y:18299253	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MSH3	LINC02582(263300),AC079070.1(98150)	+/.	./.	5:80854005	18:73613179	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL596266.1(86784),AL445687.1(37304)	MSH3	./.	+/.	1:199839674	5:80854005	intergenic	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	.	ENSG00000113318	.	.	upstream	downstream	mismatches(1)	.	.	.
AL391811.1	MSH3	-/.	+/.	1:224823010	5:80854005	intron	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000286719	ENSG00000113318	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5806),MAP7D2(15748)	+/.	./.	21:8399905	X:19990965	intron	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MAGI1(64166),SLC25A26(30610)	MSH3	./.	+/.	3:66103000	5:80854005	intergenic	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	.	ENSG00000113318	.	.	downstream	downstream	mismatches(1)	.	.	.
MRPS14	MSH3	-/.	+/.	1:175012037	5:80854005	intron	intron	translocation/5'-5'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000120333	ENSG00000113318	.	.	upstream	downstream	mismatches(1)	.	.	.
TTC34	D2HGDH	-/.	+/.	1:2688575	2:241734839	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000215912	ENSG00000180902	.	.	upstream	upstream	mismatches(1)	.	.	.
MSH3	BTF3P15(55627),AL390123.1(71197)	+/.	./.	5:80854005	10:109590617	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MSH3	LINC00351	+/.	+/.	5:80854005	13:85468532	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000226317	.	.	downstream	upstream	mismatches(1)	.	.	.
SPATA21	MSH3	-/.	+/.	1:16423058	5:80854005	intron	intron	translocation/5'-5'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000187144	ENSG00000113318	.	.	upstream	downstream	mismatches(1)	.	.	.
MSH3	MCF2L	+/.	+/.	5:80854005	13:112901270	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000126217	.	.	downstream	downstream	mismatches(1)	.	.	.
MSH3	UHRF1BP1L	+/.	-/.	5:80854005	12:100098810	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000111647	.	.	downstream	upstream	mismatches(1)	.	.	.
ABHD6	AC007493.1	+/.	+/.	3:58293170	16:50495274	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000163686	ENSG00000260573	.	.	upstream	upstream	mismatches(1)	.	.	.
RRS1	AC004540.1(9414),KIAA0087(26112)	+/+	./-	8:66429390	7:26507009	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	Ribosome_biogenesis_regulatory_protein_(RRS1)(34%)|	.	.	ENSG00000179041	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC007493.1	HLCS	+/.	-/.	16:50495296	21:36797094	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000260573	ENSG00000159267	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC22A1	FP236383.3	+/.	+/.	6:160125463	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000175003	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	5_8S_rRNA(2080),FP236383.3(121630)	-/.	./.	3:96617935	21:8259013	5'UTR	intergenic	translocation	0	0	0	2	5911	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96617935	21:8397818	5'UTR	intron	translocation/3'-3'	0	0	0	2	6042	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
FAM217B(5302),CDH26(4441)	FAM217B(5315),CDH26(4428)	./.	./.	20:59953982	20:59953995	intergenic	intergenic	duplication/ITD	0	0	0	9	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DMD	DMD	-/.	-/.	X:31138625	X:31138638	intron	intron	duplication/ITD	0	0	0	22	0	low	.	.	.	.	.	ENSG00000198947	ENSG00000198947	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
PHF21B	RPS27AP20(98222),BX890604.1(1706)	-/.	./.	22:44987779	X:3815822	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000056487	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GRM7	RPS27AP20(98222),BX890604.1(1706)	+/.	./.	3:6921816	X:3815822	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000196277	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4C	RPS27AP20(98222),BX890604.1(1706)	-/.	./.	11:40651373	X:3815822	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000148948	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC010551.1(1137),ATP2C2(23983)	RPS27AP20(98220),BX890604.1(1708)	./.	./.	16:84344544	X:3815820	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104777.1	AC087269.2(3513),AC087269.1(644)	-/.	./.	2:150617538	8:8723049	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TCEANC2(9304),AL357673.1(10863)	U3(104494),GPC1(41726)	./.	./.	1:54121823	2:240393937	intergenic	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC5A7	LINC02612	+/+	+/+	2:107986610	2:150617539	5'UTR	intron	deletion	0	0	0	0	45	low	.	.	.	.	.	ENSG00000115665	ENSG00000224048	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104777.1	ST6GAL1	-/.	+/.	2:150617539	3:186937241	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000073849	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	LINC02136	+/.	-/.	2:150617538	16:71395407	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000261348	.	.	upstream	upstream	mismatches(1)	.	.	.
UBBP4	PLXNA4	+/+	-/+	17:22204891	7:132611063	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000263563	ENSG00000221866	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104777.1	LINC02136	-/.	-/.	2:150617538	16:71395407	intron	intron	translocation/5'-5'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000261348	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	AC090022.1(29182),AC090022.2(25866)	-/.	./.	2:150617538	12:60393117	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	AC005863.1(4234),LINC02096(49637)	-/.	./.	2:150617538	17:14784920	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	ZNF397	+/.	+/.	2:150617538	18:35241225	intron	5'UTR	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000186812	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	ZNF592(10800),ALPK3(111)	+/.	./.	2:150617538	15:84817245	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	ZNF592(10800),ALPK3(111)	-/.	./.	2:150617538	15:84817245	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FKBP2	LINC02612	+/+	+/-	11:64241015	2:150617554	exon	intron	translocation/5'-5'	0	0	0	0	45	low	.	.	.	.	.	ENSG00000173486	ENSG00000224048	.	.	downstream	downstream	mismatches(1)	.	.	.
FKBP2	AC104777.1	+/+	-/-	11:64241015	2:150617554	exon	intron	translocation	0	0	0	0	45	low	.	.	.	.	.	ENSG00000173486	ENSG00000232359	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02612	AC118758.2	+/.	-/.	2:150617538	7:56825292	intron	exon	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000279072	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02612	RPL14P5(126725),CRLF2(50723)	+/.	./.	2:150617538	X:1136826	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02612	ASMTL	+/.	-/.	2:150617538	X:1437475	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000169093	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1370353	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1375016	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1375016	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1372221	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1372221	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1372453	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AL139243.1	SLC7A5	+/.	-/.	10:98446739	16:87835009	exon	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000287261	ENSG00000103257	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR100HG	LINC00558(153240),LINC00458(22583)	-/-	./-	11:122100665	13:54093200	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255248	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1376882	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU6-461P(173237),RNU1-43P(231553)	KDM4C	./.	+/.	3:102928407	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1369189	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1369189	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1375482	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1371518	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1371518	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1372685	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1372685	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1370123	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1370123	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1374085	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1374784	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
IGHVIII-38-1(823),IGHV4-39(2589)	IGHVIII-38-1(894),IGHV4-39(2518)	./.	./.	14:106419122	14:106419193	intergenic	intergenic	duplication/ITD	0	0	0	192	192	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1368722	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1368722	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1369656	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1368954	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1368954	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC018445.6(26774),AC068473.3(8846)	GAGE12J	./.	+/.	18:79567614	X:49322443	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000224659	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1376415	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1376415	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1373618	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	RPL14P5(26394),CRLF2(151054)	+/.	./.	2:150617538	X:1036495	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	P2RY8	+/.	-/.	2:150617538	X:1495719	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000182162	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	P2RY8	-/.	-/.	2:150617538	X:1495719	intron	intron	translocation/5'-5'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000182162	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1376650	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	MAD1L1	+/.	-/.	2:150617554	7:1917759	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000002822	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104777.1	MAD1L1	-/.	-/.	2:150617554	7:1917759	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000002822	.	.	downstream	downstream	mismatches(1)	.	.	.
IP6K1(3646),CDHR4(544)	AP003390.1(4495),AP001994.1(77186)	./.	./.	3:49790188	11:119744118	intergenic	intergenic	translocation	0	0	0	14	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
IP6K1(3646),CDHR4(544)	AP001823.1(3430),ELMOD1(758)	./.	./.	3:49790188	11:107590333	intergenic	intergenic	translocation	0	0	0	14	1909	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
IP6K1(3646),CDHR4(544)	AP001823.1(3437),ELMOD1(751)	./.	./.	3:49790188	11:107590340	intergenic	intergenic	translocation	0	0	0	14	1909	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
IP6K1(3646),CDHR4(544)	AP001823.1(3435),ELMOD1(753)	./.	./.	3:49790188	11:107590338	intergenic	intergenic	translocation	0	0	0	14	1909	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
IP6K1(3646),CDHR4(544)	LINC02620	./.	-/.	3:49790188	10:104479908	intergenic	intron	translocation	0	0	0	14	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
IP6K1(3646),CDHR4(544)	AP003390.1(4502),AP001994.1(77179)	./.	./.	3:49790188	11:119744125	intergenic	intergenic	translocation	0	0	0	14	3002	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
IP6K1(3646),CDHR4(544)	AP003390.1(4501),AP001994.1(77180)	./.	./.	3:49790188	11:119744124	intergenic	intergenic	translocation	0	0	0	14	3002	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051971	1:161059767	intron	intron	duplication	0	0	0	66	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC104009.1	AC104009.1	-/.	-/.	11:22312080	11:22312093	intron	intron	duplication/ITD	0	0	0	9	7	low	.	.	.	.	.	ENSG00000254768	ENSG00000254768	.	.	upstream	downstream	low_entropy(3)	.	.	.
PNPLA4	PNPLA4	-/-	-/-	X:7899625	X:7899680	3'UTR	3'UTR	duplication/ITD	0	0	0	8	8	low	.	.	Patatin-like_phospholipase(100%)|	.	.	ENSG00000006757	ENSG00000006757	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
HOXC6	AC012531.3	+/.	+/.	12:54008827	12:54008838	intron	intron	duplication	0	0	0	12	0	low	.	.	.	.	.	ENSG00000197757	ENSG00000273049	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
AC012531.3	HOXC6	+/.	+/.	12:54008827	12:54008838	intron	intron	duplication	0	0	0	12	0	low	.	.	.	.	.	ENSG00000273049	ENSG00000197757	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
AC012531.3	AC012531.3	+/.	+/.	12:54008827	12:54008838	intron	intron	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	ENSG00000273049	ENSG00000273049	.	.	upstream	downstream	duplicates(8),low_entropy(2)	.	.	.
KCNK12	C13orf42	-/.	-/.	2:47521639	13:51148087	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184261	ENSG00000226792	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAH14	AP001823.1(3430),ELMOD1(758)	+/.	./.	1:225078903	11:107590333	intron	intergenic	translocation	0	0	0	144	1909	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	upstream	mismatches	.	.	.
NADK	AL583785.1(23837),LINC00583(67563)	-/.	./.	1:1778663	9:13860408	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000008130	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC128676.1(303218),RNU6-417P(432567)	LINC01841(5040),ADGRE5(5265)	./.	./.	7:62578896	19:14375236	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
KMT2C	RALGPS1	-/.	+/.	7:152384549	9:126927413	intron	intron	translocation/5'-5'	0	0	0	177	0	low	.	.	.	.	.	ENSG00000055609	ENSG00000136828	.	.	upstream	downstream	mismatches(3)	.	.	.
KMT2C	PDZD8(8195),AC005871.2(41559)	-/.	./.	7:152384549	10:117383635	intron	intergenic	translocation	0	0	0	177	0	low	.	.	.	.	.	ENSG00000055609	.	.	.	upstream	downstream	mismatches(3)	.	.	.
KMT2C	AC079142.1(38795),VCX3B(51649)	-/.	./.	7:152384549	X:8413181	intron	intergenic	translocation	0	0	0	177	0	low	.	.	.	.	.	ENSG00000055609	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	11:82143075	11:82143094	intron	intron	duplication/ITD	0	0	0	1119	401	low	.	.	.	.	.	ENSG00000245832	ENSG00000245832	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDH8	CDH8	-/.	-/.	16:61768348	16:61768446	intron	intron	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	ENSG00000150394	ENSG00000150394	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC092506.1(281305),AL591888.1(490423)	LINC02620	./.	-/.	1:104507983	10:104479909	intergenic	intron	translocation	0	0	0	26	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
AC092506.1(281305),AL591888.1(490423)	MIR4300HG	./.	-/.	1:104507983	11:82143174	intergenic	intron	translocation	0	0	0	26	1095	low	.	.	.	.	.	.	ENSG00000245832	.	.	upstream	downstream	low_entropy	.	.	.
AC092506.1(281305),AL591888.1(490423)	AP003390.1(4503),AP001994.1(77178)	./.	./.	1:104507983	11:119744126	intergenic	intergenic	translocation	0	0	0	26	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy	.	.	.
AC092506.1(281305),AL591888.1(490423)	IGHVIII-38-1(920),IGHV4-39(2492)	./.	./.	1:104507983	14:106419219	intergenic	intergenic	translocation	0	0	0	26	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy	.	.	.
AP003170.2	AC005332.2(3963),ARHGAP27P2(2156)	+/.	./.	11:113789588	17:68196765	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000255870	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ATF4P4	AC005332.2(3963),ARHGAP27P2(2156)	+/.	./.	11:113789588	17:68196765	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000256167	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003170.2	ARHGAP27P1-BPTFP1-KPNA2P3	+/.	-/.	11:113789588	17:64781161	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255870	ENSG00000215769	.	.	upstream	upstream	mismatches(1)	.	.	.
ATF4P4	ARHGAP27P1-BPTFP1-KPNA2P3	+/.	-/.	11:113789588	17:64781161	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000256167	ENSG00000215769	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003170.2	ARHGAP27	+/.	-/.	11:113789588	17:45432470	exon	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000255870	ENSG00000159314	.	.	upstream	upstream	mismatches(1)	.	.	.
SH3GL1P1	AC005332.2(3963),ARHGAP27P2(2156)	+/.	./.	17:32040756	17:68196765	exon	intergenic	duplication	0	0	0	0	2	low	.	.	.	.	.	ENSG00000266777	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	4:152661275	4:152661353	intron	intron	duplication/ITD	0	0	0	16	15	low	.	.	.	.	.	ENSG00000170006	ENSG00000170006	.	.	upstream	downstream	low_entropy(1)	.	.	.
RGN	RGN	+/.	+/.	X:47086730	X:47086794	intron	intron	duplication/ITD	0	0	0	40	40	low	.	.	.	.	.	ENSG00000130988	ENSG00000130988	.	.	upstream	downstream	low_entropy(1)	.	.	.
TLK1(28639),METTL8(57452)	MT-RNR2	./.	+/.	2:171259953	MT:2220	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GLMN	PGAM1P13(190798),AC025508.1(18759)	-/.	./.	1:92296152	8:107838830	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000174842	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GLMN	CDKL5	-/.	+/.	1:92296155	X:18453454	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000174842	ENSG00000008086	.	.	downstream	downstream	mismatches(1)	.	.	.
ERBB4	INPP4B	-/.	-/.	2:211775229	4:142713193	intron	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000178568	ENSG00000109452	.	.	downstream	downstream	mismatches(1)	.	.	.
INPP4B	TBATA(538),RPS26P40(8291)	-/.	./.	4:142713193	10:70785939	intron	intergenic	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	.	.	.	downstream	upstream	mismatches(1)	.	.	.
INPP4B	MTRNR2L1	-/.	+/.	4:142713193	17:22523387	intron	5'UTR	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	ENSG00000256618	.	.	downstream	upstream	mismatches(1)	.	.	.
INPP4B	MTRNR2L8	-/.	-/.	4:142713193	11:10508900	intron	5'UTR	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	ENSG00000255823	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	INPP4B	-/.	-/.	3:96617947	4:142713193	5'UTR	intron	translocation/3'-3'	0	0	0	3	17	low	.	.	.	.	.	ENSG00000269028	ENSG00000109452	.	.	downstream	downstream	mismatches(1)	.	.	.
DNMT3A(5435),ARNILA(21111)	INPP4B	./.	-/.	2:25348025	4:142713193	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000109452	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479904	X:133661640	intron	intron	translocation/3'-3'	0	0	0	1761	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	duplicates	.	.	.
INPP4B	VEGFC	-/.	-/.	4:142713193	4:176779158	intron	intron	deletion	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	ENSG00000150630	.	.	downstream	upstream	mismatches(1)	.	.	.
INPP4B	AC104389.5	-/.	-/.	4:142713193	11:5511828	intron	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	ENSG00000239920	.	.	downstream	upstream	mismatches(1)	.	.	.
INPP4B	U3(33632),MRRFP1(241830)	-/.	./.	4:142713193	X:122874277	intron	intergenic	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	.	.	.	downstream	downstream	mismatches(1)	.	.	.
INPP4B	PPP1R3C(31461),GAPDHP28(2248)	-/.	./.	4:142713193	10:91664532	intron	intergenic	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	.	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2319),FP236383.3(121391)	FP236383.3	./.	+/.	21:8259252	21:8394736	intergenic	intron	deletion/read-through	0	0	0	1	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
INPP4B	MTND1P22(1346),AC107208.1(30941)	-/.	./.	4:142713193	4:155465169	intron	intergenic	inversion	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PSMC1P12(13691),AL139148.1(83662)	INPP4B	./.	-/.	1:118629337	4:142713195	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000109452	.	.	downstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392809	1:90392818	intron	intron	duplication/ITD	0	0	0	312	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PDE1C	PDE1C	-/.	-/.	7:32297998	7:32298013	intron	intron	duplication/ITD	0	0	0	10	9	low	.	.	.	.	.	ENSG00000154678	ENSG00000154678	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC019211.1	AC019211.1	+/.	+/.	2:220257282	2:220257317	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000239498	ENSG00000239498	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NAALADL2	AC091167.6	+/.	+/.	3:175349066	15:90270297	intron	intron	translocation	0	0	0	4	14	low	.	.	.	.	.	ENSG00000177694	ENSG00000275674	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NAALADL2	NGRN	+/.	+/.	3:175349066	15:90270297	intron	intron	translocation	0	0	0	4	14	low	.	.	.	.	.	ENSG00000177694	ENSG00000182768	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF19	TAT-AS1(6226),AC009097.2(39295)	-/.	./.	16:71521081	16:71584413	intron	intergenic	deletion/read-through	0	0	0	45	5	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates	.	.	.
NAALADL2	AC091167.2	+/.	+/.	3:175349066	15:90270297	intron	intron	translocation	0	0	0	4	14	low	.	.	.	.	.	ENSG00000177694	ENSG00000261147	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC091167.6	GAPDHP16(18527),AF127577.4(25054)	+/.	./.	15:90270297	21:14793789	intron	intergenic	translocation	0	0	0	14	5	low	.	.	.	.	.	ENSG00000275674	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NGRN	GAPDHP16(18527),AF127577.4(25054)	+/.	./.	15:90270297	21:14793789	intron	intergenic	translocation	0	0	0	14	5	low	.	.	.	.	.	ENSG00000182768	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC103796.1	AC091167.6	-/.	+/.	11:27781140	15:90270297	intron	intron	translocation	0	0	0	5	14	low	.	.	.	.	.	ENSG00000255496	ENSG00000275674	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC103796.1	NGRN	-/.	+/.	11:27781140	15:90270297	intron	intron	translocation	0	0	0	5	14	low	.	.	.	.	.	ENSG00000255496	ENSG00000182768	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC103796.1	AC091167.2	-/.	+/.	11:27781140	15:90270297	intron	intron	translocation	0	0	0	5	14	low	.	.	.	.	.	ENSG00000255496	ENSG00000261147	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
OR5D14(14699),OR5L1(168)	AC091167.6	./.	+/.	11:55811199	15:90270299	intergenic	intron	translocation	0	0	0	9	14	low	.	.	.	.	.	.	ENSG00000275674	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC1A2	NGRN	-/.	+/.	11:35290493	15:90270297	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000110436	ENSG00000182768	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC1A2	AC091167.2	-/.	+/.	11:35290493	15:90270297	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000110436	ENSG00000261147	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	AC091167.6	./.	+/.	3:95431526	15:90270299	intergenic	intron	translocation	0	0	0	45	14	low	.	.	.	.	.	.	ENSG00000275674	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	NGRN	./.	+/.	3:95431526	15:90270299	intergenic	intron	translocation	0	0	0	45	14	low	.	.	.	.	.	.	ENSG00000182768	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	AC091167.2	./.	+/.	3:95431526	15:90270299	intergenic	intron	translocation	0	0	0	45	14	low	.	.	.	.	.	.	ENSG00000261147	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NGRN	LINC02864	+/.	-/.	15:90270299	18:73168244	intron	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000182768	ENSG00000263711	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.5	CD55	-/-	+/+	21:8437807	1:207361333	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281181	ENSG00000196352	.	.	upstream	upstream	mismatches(1)	.	.	.
CD55	5_8S_rRNA(1992),DUX4L32(19586)	+/.	./.	1:207361333	20:29299238	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196352	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF638	CT867976.1(150833),AC138776.1(197047)	+/.	./.	2:71338687	22:11630476	intron	intergenic	translocation	0	0	0	2	8	low	.	.	.	.	.	ENSG00000075292	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7	ZNF638	-/-	+/-	21:8254770	2:71338687	exon	intron	translocation/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000281383	ENSG00000075292	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.6	ZNF638	-/-	+/-	21:8210562	2:71338687	exon	intron	translocation/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000280800	ENSG00000075292	.	.	upstream	downstream	mismatches(1)	.	.	.
AC010970.1	UBE2V1P9(93940),RNU6-555P(213392)	-/-	./+	Y:10198168	X:90383843	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225840	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7	UBE2V1P9(93940),RNU6-555P(213392)	-/-	./+	21:8254770	X:90383843	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281383	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.4	UBE2V1P9(93940),RNU6-555P(213392)	-/-	./+	21:8393597	X:90383843	exon	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000280614	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.5	UBE2V1P9(93940),RNU6-555P(213392)	-/-	./+	21:8437807	X:90383843	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281181	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NEBL	FP671120.4	-/.	+/.	10:20893508	21:8211722	intron	intron	translocation/5'-5'	0	0	0	0	136	low	.	.	.	.	.	ENSG00000078114	ENSG00000278996	.	.	upstream	downstream	mismatches	.	.	.
TFAP2B	DDB2	+/.	+/.	6:50846461	11:47233103	3'UTR	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000008196	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
AC010970.1	UBE2V1P3(94050),AC010737.1(75725)	-/-	./+	Y:10198168	Y:3960772	exon	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225840	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.5	ZNF638	-/-	+/-	21:8437807	2:71338687	exon	intron	translocation/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000281181	ENSG00000075292	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.6	UBE2V1P3(94050),AC010737.1(75725)	-/-	./+	21:8210562	Y:3960772	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.5	UBE2V1P3(94050),AC010737.1(75725)	-/-	./+	21:8437807	Y:3960772	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281181	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CD55	CT867976.1(150833),AC138776.1(197047)	+/.	./.	1:207361333	22:11630476	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000196352	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.6	CD55	-/-	+/+	21:8210562	1:207361333	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000280800	ENSG00000196352	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.4	CD55	-/-	+/+	21:8393597	1:207361333	exon	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000280614	ENSG00000196352	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF638	5_8S_rRNA(1992),DUX4L32(19586)	+/.	./.	2:71338687	20:29299238	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000075292	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TPRXL	JAKMIP1	+/.	-/.	3:14038249	4:6174667	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000180438	ENSG00000152969	.	.	upstream	upstream	homopolymer(1)	.	.	.
TPRXL	C4orf50	+/.	-/.	3:14038249	4:6174667	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000180438	ENSG00000181215	.	.	upstream	upstream	homopolymer(1)	.	.	.
TPRXL	AC061979.1(1992),MUC5B(832)	+/.	./.	3:14038249	11:1222234	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000180438	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
TET1	TPRXL	+/+	+/+	10:68560380	3:14038249	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138336	ENSG00000180438	.	.	downstream	upstream	homopolymer(1)	.	.	.
FLT1	TPRXL	-/-	+/+	13:28389519	3:14038249	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	Immunoglobulin_I-set_domain(40%),Immunoglobulin_domain(100%)|	.	.	ENSG00000102755	ENSG00000180438	.	.	upstream	upstream	homopolymer(1)	.	.	.
GPR39	FP671120.4	+/.	+/.	2:132557878	21:8214940	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
NAALADL2	FP236383.3	+/.	+/.	3:175349066	21:8397433	intron	intron	translocation	0	0	0	4	543	low	.	.	.	.	.	ENSG00000177694	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NAALADL2	FP671120.4	+/.	+/.	3:175349066	21:8214395	intron	intron	translocation	0	0	0	4	540	low	.	.	.	.	.	ENSG00000177694	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
NAALADL2	DLG2	+/.	-/.	3:175349066	11:85484187	intron	intron	translocation/5'-5'	0	0	0	4	279	low	.	.	.	.	.	ENSG00000177694	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02530(23827),PHACTR1(107323)	AL512634.1(10299),CHCHD2P9(182691)	./.	./.	6:12609231	9:79208613	intergenic	intergenic	translocation	0	0	0	2	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262465	6:42262468	intron	intron	duplication/ITD	0	0	0	2363	14	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262470	6:42262482	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CAMK1D	AC018697.1	+/.	+/.	10:12661733	18:24849900	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000183049	ENSG00000266573	.	.	upstream	downstream	mismatches(1)	.	.	.
ST13P7(72614),EXOC4(9945)	ST13P7(72623),EXOC4(9936)	./.	./.	7:133243128	7:133243137	intergenic	intergenic	duplication/ITD	0	0	0	24	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
PHF6(23316),HPRT1(8058)	PHF6(23369),HPRT1(8005)	./.	./.	X:134452107	X:134452160	intergenic	intergenic	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
AP005436.1	PAXBP1(198),C21orf62-AS1(110)	-/.	./.	11:88092330	21:32771990	intron	intergenic	translocation	0	0	0	1166	60	low	.	.	.	.	.	ENSG00000255102	.	.	.	upstream	downstream	low_entropy	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078878	10:104479915	intron	intron	translocation	0	0	0	171	1761	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078878	10:104479918	intron	intron	translocation	0	0	0	171	1761	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	MIR4300HG	+/.	-/.	1:225078878	11:82143179	intron	intron	translocation	0	0	0	171	1095	low	.	.	.	.	.	ENSG00000185842	ENSG00000245832	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	AP003390.1(4503),AP001994.1(77178)	+/.	./.	1:225078878	11:119744126	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	AP003390.1(4506),AP001994.1(77175)	+/.	./.	1:225078878	11:119744129	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	AP001823.1(3429),ELMOD1(759)	+/.	./.	1:225078878	11:107590332	intron	intergenic	translocation	0	0	0	171	1909	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	upstream	mismatches	.	.	.
MTRNR2L12	MTRNR2L8	-/.	-/.	3:96617456	11:10508684	5'UTR	5'UTR	translocation/3'-3'	0	0	0	70	8	low	.	.	.	.	.	ENSG00000269028	ENSG00000255823	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAH14	AP001823.1(3429),ELMOD1(759)	+/.	./.	1:225078862	11:107590332	intron	intergenic	translocation	0	0	0	171	1909	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	upstream	mismatches	.	.	.
DNAH14	AP001823.1(3428),ELMOD1(760)	+/.	./.	1:225078878	11:107590331	intron	intergenic	translocation	0	0	0	171	1909	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	upstream	mismatches	.	.	.
AC021087.4(328),CCDC127(199)	5_8S_rRNA(2104),FP236383.3(121606)	./.	./.	5:196669	21:8259037	intergenic	intergenic	translocation	0	0	0	12	5782	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AC021087.4(328),CCDC127(199)	FP671120.4	./.	+/.	5:196669	21:8214808	intergenic	intron	translocation	0	0	0	12	6035	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches	.	.	.
LINC02098(161774),ETS1(55546)	5_8S_rRNA(2104),FP236383.3(121606)	./.	./.	11:128403215	21:8259037	intergenic	intergenic	translocation	0	0	0	8	5782	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
LINC02098(161774),ETS1(55546)	FP236383.3	./.	+/.	11:128403215	21:8442072	intergenic	intron	translocation	0	0	0	8	6003	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches	.	.	.
LINC02098(161774),ETS1(55546)	FP236383.3	./.	+/.	11:128403215	21:8397842	intergenic	intron	translocation	0	0	0	8	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches	.	.	.
SNTG2	RAB22A(21628),VAPB(94)	+/.	./.	2:1349091	20:58389135	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172554	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TCEANC2(9302),AL357673.1(10865)	DACT2(25891),AL138918.1(29029)	./.	./.	1:54121821	6:168345668	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	EFHC2	+/.	-/.	21:8397921	X:44282624	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000183690	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
TFRC	AC009161.1(206456),AC009110.1(32170)	-/-	./-	3:196081920	16:62564202	5'UTR	intergenic	translocation	0	0	0	4	21	low	.	.	.	.	.	ENSG00000072274	.	.	.	upstream	downstream	mismatches(1)	.	.	.
XPC	ROBO1	-/.	-/.	3:14178231	3:79598016	intron	intron	deletion	0	0	0	11	6	low	.	.	.	.	.	ENSG00000154767	ENSG00000169855	.	.	downstream	upstream	mismatches(1)	.	.	.
ENAH	XPC	-/.	-/.	1:225578641	3:14178231	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000154380	ENSG00000154767	.	.	upstream	downstream	mismatches(1)	.	.	.
XPC	AC009161.1(206457),AC009110.1(32169)	-/.	./.	3:14178229	16:62564203	intron	intergenic	translocation	0	0	0	11	21	low	.	.	.	.	.	ENSG00000154767	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC45A4(8629),AC011676.4(9196)	FP236383.3	./.	+/.	8:141316934	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ADM	FP236383.3	+/+	+/+	11:10306618	21:8397829	CDS	intron	translocation	0	0	0	0	1126	low	.	.	Calcitonin_/_CGRP_/_IAPP_family(100%)|	.	.	ENSG00000148926	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CROCC2(5262),SNED1(45)	FP236383.3	./.	+/.	2:240998573	21:8397829	intergenic	intron	translocation	0	0	0	10	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL158151.3	FP236383.3	+/.	+/.	9:129178735	21:8397829	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000235007	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDK14	DDB2	+/+	+/+	7:91209432	11:47233086	3'UTR	intron	translocation	0	0	0	5	0	low	.	.	Protein_kinase_domain(100%)|WD_domain__G-beta_repeat(100%)	.	.	ENSG00000058091	ENSG00000134574	.	.	downstream	upstream	mismatches	.	.	.
PTPRE	AC097374.1	+/+	-/+	10:127907309	2:94903279	5'UTR/splice-site	intron	translocation/5'-5'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000132334	ENSG00000259848	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PTPRE	LETM1	+/+	-/-	10:127907309	4:1841522	5'UTR/splice-site	CDS	translocation	0	0	0	0	32	low	.	.	|LETM1-like__RBD(100%)	.	.	ENSG00000132334	ENSG00000168924	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC45A4(8629),AC011676.4(9196)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	8:141316934	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TOGARAM2	5_8S_rRNA(2092),FP236383.3(121618)	+/.	./.	2:29042539	21:8259025	intron	intergenic	translocation	0	0	0	4	6	low	.	.	.	.	.	ENSG00000189350	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL158151.3	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	9:129178735	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000235007	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MLYCD	5_8S_rRNA(2092),FP236383.3(121618)	+/+	./+	16:83922179	21:8259025	3'UTR	intergenic	translocation	0	0	0	0	6	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MLYCD	FP236383.3	+/+	+/+	16:83922179	21:8397830	3'UTR	intron	translocation	0	0	0	0	1126	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PHRF1	5_8S_rRNA(2092),FP236383.3(121618)	+/.	./.	11:589569	21:8259025	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000070047	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	IQSEC2	+/.	-/.	21:8442059	X:53306177	intron	intron	translocation/3'-3'	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000124313	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ADM	FP236383.3	+/+	+/+	11:10306618	21:8442059	CDS	intron	translocation	0	0	0	0	5962	low	.	.	Calcitonin_/_CGRP_/_IAPP_family(100%)|	.	.	ENSG00000148926	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CROCC2(5262),SNED1(45)	FP236383.3	./.	+/.	2:240998573	21:8442059	intergenic	intron	translocation	0	0	0	10	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL158151.1	FP236383.3	+/.	+/.	9:129178735	21:8442059	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000204055	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	IQSEC2	+/.	-/.	21:8214795	X:53306177	intron	intron	translocation/3'-3'	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000124313	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CROCC2(5262),SNED1(45)	FP671120.4	./.	+/.	2:240998573	21:8214795	intergenic	intron	translocation	0	0	0	10	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MLYCD	FP671120.4	+/+	+/+	16:83922179	21:8214796	3'UTR	intron	translocation	0	0	0	0	5263	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
PHRF1	FP671120.4	+/.	+/.	11:589569	21:8214796	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000070047	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	RAMP3(65701),AC073968.2(16678)	-/.	./.	3:96617731	7:45252003	5'UTR	intergenic	translocation	0	0	0	8	71	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL031123.5	LINC01608	+/+	-/+	6:6731180	8:110977288	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288046	ENSG00000253877	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(92915),RNA5SP103(1239)	BICC1	./.	+/.	2:128443842	10:58688003	intergenic	intron	translocation	0	0	0	7	87	low	.	.	.	.	.	.	ENSG00000122870	.	.	downstream	downstream	homopolymer(1)	.	.	.
LDB2	DDB2	-/.	+/.	4:16609734	11:47233103	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000169744	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	TMEM179(44951),AL583722.2(2950)	+/.	./.	11:47233103	14:104650598	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKG1	AC012060.1(92676),LINC02248(36443)	+/.	./.	10:51731990	15:26358594	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000185532	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	AL049792.1(9699),RAP2C(61973)	+/.	./.	21:8217546	X:132141051	intron	intergenic	translocation	0	0	0	25	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	AL049792.1(9699),RAP2C(61973)	+/.	./.	21:8444816	X:132141051	intron	intergenic	translocation	0	0	0	62	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	FP236383.3	-/.	+/.	10:104479906	21:8414016	intron	intron	translocation/3'-3'	0	0	0	1761	63	low	.	.	.	.	.	ENSG00000225768	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
AP003390.1(4502),AP001994.1(77179)	FP236383.3	./.	+/.	11:119744125	21:8414016	intergenic	intron	translocation	0	0	0	3002	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
AP003390.1(4494),AP001994.1(77187)	FP236383.3	./.	+/.	11:119744117	21:8414016	intergenic	intron	translocation	0	0	0	3583	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
AP003390.1(4492),AP001994.1(77189)	FP236383.3	./.	+/.	11:119744115	21:8414016	intergenic	intron	translocation	0	0	0	3583	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
AP003390.1(4490),AP001994.1(77191)	FP236383.3	./.	+/.	11:119744113	21:8414016	intergenic	intron	translocation	0	0	0	3583	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
SLC12A3	AAR2(382),DLGAP4(35036)	+/.	./.	16:56880419	20:36271300	intron	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000070915	.	.	.	upstream	upstream	mismatches(1)	.	.	.
WLS	AAR2(382),DLGAP4(35036)	-/.	./.	1:68121505	20:36271300	intron	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000116729	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPR39	NPSR1-AS1	+/.	-/.	2:132557875	7:34601979	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000197085	.	.	downstream	upstream	mismatches(1)	.	.	.
RAD51B	AAR2(383),DLGAP4(35035)	+/.	./.	14:68714350	20:36271301	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182185	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ASCC3	AC091167.6	-/.	+/.	6:100809843	15:90270297	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000112249	ENSG00000275674	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDK18	GPR39	+/+	+/-	1:205528126	2:132557875	CDS	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	Protein_kinase_domain(59%)|	.	.	ENSG00000117266	ENSG00000183840	.	.	downstream	downstream	mismatches(1)	.	.	.
WLS	GPR39	-/.	+/.	1:68121502	2:132557875	intron	intron	translocation	0	0	0	3	10	low	.	.	.	.	.	ENSG00000116729	ENSG00000183840	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	10:44886350	10:44886359	intron	intron	duplication/ITD	0	0	0	12	2	low	.	.	.	.	.	ENSG00000224812	ENSG00000224812	.	.	upstream	downstream	duplicates(1)	.	.	.
MSH3	AL132709.7(24438),AL132709.8(18166)	+/.	./.	5:80854005	14:101102348	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4502),AP001994.1(77179)	FXNP1(22679),NRXN3(87416)	./.	./.	11:119744125	14:78082957	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
TCF7L2	AP003390.1(4500),AP001994.1(77181)	+/.	./.	10:113117461	11:119744123	intron	intergenic	translocation	0	0	0	129	3002	low	.	.	.	.	.	ENSG00000148737	.	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4500),AP001994.1(77181)	FXNP1(22679),NRXN3(87416)	./.	./.	11:119744123	14:78082957	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
TCF7L2	AP003390.1(4498),AP001994.1(77183)	+/.	./.	10:113117461	11:119744121	intron	intergenic	translocation	0	0	0	129	3002	low	.	.	.	.	.	ENSG00000148737	.	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.6	AC105252.1(292282),AC079380.1(3756)	-/-	./+	21:8210561	4:133867490	exon	intergenic	translocation	0	0	0	2	11	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8218872	21:8442049	intron	intron	inversion/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4496),AP001994.1(77185)	FXNP1(22679),NRXN3(87416)	./.	./.	11:119744119	14:78082957	intergenic	intergenic	translocation	0	0	0	3583	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
TCF7L2	AP003390.1(4494),AP001994.1(77187)	+/.	./.	10:113117461	11:119744117	intron	intergenic	translocation	0	0	0	129	3583	low	.	.	.	.	.	ENSG00000148737	.	.	.	downstream	downstream	low_entropy	.	.	.
TCF7L2	AP003390.1(4502),AP001994.1(77179)	+/.	./.	10:113117461	11:119744125	intron	intergenic	translocation	0	0	0	129	3002	low	.	.	.	.	.	ENSG00000148737	.	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4494),AP001994.1(77187)	FXNP1(22679),NRXN3(87416)	./.	./.	11:119744117	14:78082957	intergenic	intergenic	translocation	0	0	0	3583	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP236383.3(1710),FP236383.11(5818)	+/.	./.	21:8214882	21:8456502	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214882	21:8411945	intron	intron	duplication	0	0	0	0	1	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	PUDP	+/.	-/.	21:8214882	X:6796693	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000130021	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079304.1	FP671120.4	-/.	+/.	2:52020772	21:8214882	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287344	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007402.1	FP671120.4	+/.	+/.	2:52020772	21:8214882	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231918	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3(6953),FP236383.11(575)	+/.	./.	21:8214882	21:8461745	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262598	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP236383.3(2734),FP236383.11(4794)	+/.	./.	21:8214882	21:8457526	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4(2738),FP671120.10(4970)	+/.	./.	21:8214882	21:8230384	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214882	21:8412964	intron	intron	duplication	0	0	0	0	1	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262480	6:42262489	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8441987	21:8442012	intron	intron	duplication/ITD	0	0	0	16	14	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214882	21:8220818	intron	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214882	21:8403817	intron	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
NBPF7	FP671120.4	-/.	+/.	1:119838744	21:8214882	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000215864	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396541	8:22396554	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4498),AP001994.1(77183)	./.	./.	3:137274346	11:119744121	intergenic	intergenic	translocation	0	0	0	71	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
TNNI3K	AC084030.1(20692),AC012063.1(135742)	+/.	./.	1:74253700	2:236775055	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000116783	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MFAP3	AL008718.2(4880),AL008718.1(7134)	+/.	./.	5:154145477	22:45268465	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000037749	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC010970.1	ZNF638	-/-	+/-	Y:10198168	2:71338687	exon	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000225840	ENSG00000075292	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEFF1	AL008718.2(4880),AL008718.1(7134)	+/.	./.	9:100493434	22:45268465	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000241697	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	3:19308652	3:19308665	intron	intron	duplication/ITD	0	0	0	119	119	low	.	.	.	.	.	ENSG00000183960	ENSG00000183960	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GEMIN8(106769),UBE2E4P(107720)	GEMIN8(106828),UBE2E4P(107661)	./.	./.	X:14136662	X:14136721	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01068(56234),AL136442.1(9754)	LINC01751(32885),LINC01706(7134)	./.	./.	13:79627679	20:7340317	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	LINC02620	./.	-/.	2:64025816	10:104479810	intergenic	intron	translocation	0	0	0	25	2200	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	upstream	mismatches	.	.	.
RPS26P39(141336),AL160290.2(10211)	IQCH-AS1	./.	-/.	10:123313211	15:67310422	intergenic	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	.	ENSG00000259673	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS26P39(141336),AL160290.2(10211)	IQCH	./.	+/.	10:123313211	15:67310422	intergenic	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	.	ENSG00000103599	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010343.3	IQCH-AS1	-/.	-/.	5:32995847	15:67310422	intron	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	ENSG00000250697	ENSG00000259673	.	.	downstream	upstream	mismatches(1)	.	.	.
AC010343.3	IQCH	-/.	+/.	5:32995847	15:67310422	intron	intron	translocation/3'-3'	0	0	0	0	40	low	.	.	.	.	.	ENSG00000250697	ENSG00000103599	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916414	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
TRIM51JP	LINC01484	+/+	-/+	2:95575295	5:173742753	exon	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000232717	ENSG00000253686	.	.	downstream	upstream	mismatches(1)	.	.	.
TRIM51BP	LINC01484	+/+	-/+	11:89855347	5:173742753	exon	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000204455	ENSG00000253686	.	.	downstream	upstream	mismatches(1)	.	.	.
TRIM51CP	LINC01484	+/+	-/+	11:48946088	5:173742753	exon	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000249910	ENSG00000253686	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01484	AL355499.2	-/.	+/.	5:173742768	6:8250705	intron	intron	translocation/3'-3'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000253686	ENSG00000285216	.	.	downstream	upstream	mismatches(1)	.	.	.
AC072026.2	SHISAL2B	-/.	+/.	3:120815292	5:64716447	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286827	ENSG00000145642	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC072026.2	MFAP3	-/.	+/.	3:120815294	5:154164102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286827	ENSG00000037749	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL035412.1(14769),AL033530.1(24008)	SHISAL2B	./.	+/.	1:68655194	5:64716445	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000145642	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL035412.1(14769),AL033530.1(24008)	MFAP3	./.	+/.	1:68655194	5:154164102	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000037749	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LRRC7	SHISAL2B	+/.	+/.	1:69890103	5:64716445	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000033122	ENSG00000145642	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MICOS10	FP236383.3	+/.	+/.	1:19543428	21:8441450	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173436	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC7	MFAP3	+/.	+/.	1:69890103	5:154164102	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000033122	ENSG00000037749	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MFAP3	CTPS2	+/.	-/.	5:154164102	X:16644866	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000037749	ENSG00000047230	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
THEGL(37438),HOPX(7043)	THEGL(37453),HOPX(7028)	./.	./.	4:56640945	4:56640960	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARSI(7794),TCOF1(10528)	GPX1P2(177037),AP001605.1(37899)	./.	./.	5:150347101	21:27320986	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MEX3C	GPX1P2(177036),AP001605.1(37900)	-/.	./.	18:51217630	21:27320985	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000176624	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FBP1	AL445207.1(92957),TXNL1P1(169809)	-/.	./.	9:94621628	13:86555691	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165140	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02128	FP236383.3	+/.	+/.	16:50895511	21:8443897	intron	intron	translocation/3'-3'	0	0	0	5	2	low	.	.	.	.	.	ENSG00000261241	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02128	FP236383.3	+/.	+/.	16:50895511	21:8399662	intron	intron	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000261241	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFA4P1(65055),VAV3(658)	LINC02128	./.	+/.	1:107570503	16:50895511	intergenic	intron	translocation	0	0	0	2	5	low	.	.	.	.	.	.	ENSG00000261241	.	.	downstream	upstream	mismatches(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48520),TPT1P1(55414)	./.	./.	2:128340558	21:31784927	intergenic	intergenic	translocation	0	0	0	35	220	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AC009133.6	Y_RNA(92914),RNA5SP103(1240)	+/+	./-	16:29813715	2:128443841	CDS	intergenic	translocation	0	0	0	4	7	low	.	.	.	.	.	ENSG00000280893	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AP005436.1	AP003390.1(4502),AP001994.1(77179)	-/.	./.	11:88092332	11:119744125	intron	intergenic	duplication	0	0	0	1166	3002	low	.	.	.	.	.	ENSG00000255102	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC02227	SH3PXD2A	-/.	-/.	5:158408262	10:103760680	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000276778	ENSG00000107957	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093912.1(103817),AC073062.1(102173)	LINC00320	./.	-/.	2:13435500	21:20772960	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000224924	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093912.1(103816),AC073062.1(102174)	SH3PXD2A	./.	-/.	2:13435499	10:103760680	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107957	.	.	downstream	downstream	mismatches(1)	.	.	.
SIM1	SIM1	-/.	-/.	6:100458002	6:100458071	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000112246	ENSG00000112246	.	.	upstream	downstream	low_entropy(1)	.	.	.
PAPPA	ATP8A2	+/.	+/.	9:116228281	13:25620512	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000182752	ENSG00000132932	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105252.1(292282),AC079380.1(3756)	LTBP2	./.	-/.	4:133867490	14:74533689	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000119681	.	.	upstream	downstream	mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	NRP1	./.	-/.	1:146273933	10:33334708	intergenic	5'UTR	translocation	0	0	0	9	21	low	.	.	.	.	.	.	ENSG00000099250	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	NRP1	./.	-/.	1:148724716	10:33334708	intergenic	5'UTR	translocation	0	0	0	4	21	low	.	.	.	.	.	.	ENSG00000099250	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH2(12177),RNU6-465P(14018)	NRP1	./.	-/.	1:120112956	10:33334708	intergenic	5'UTR	translocation	0	0	0	4	21	low	.	.	.	.	.	.	ENSG00000099250	.	.	downstream	downstream	mismatches(1)	.	.	.
VWC2	TTC3	+/.	+/.	7:49834613	21:37200760	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188730	ENSG00000182670	.	.	upstream	downstream	mismatches(1)	.	.	.
AL355499.1	MYEOV	+/.	+/.	6:8129400	11:69310389	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000232234	ENSG00000172927	.	.	upstream	upstream	mismatches(1)	.	.	.
ZAR1	TMTC4	+/+	-/+	4:48490359	13:100657859	CDS	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000182223	ENSG00000125247	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01395(126551),AP003327.2(17893)	ZNF213-AS1	./.	-/.	11:129743820	16:3124802	intergenic	exon	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000263072	.	.	upstream	downstream	mismatches(1)	.	.	.
VWC2	MYEOV	+/.	+/.	7:49834613	11:69310389	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188730	ENSG00000172927	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4512),AP001994.1(77169)	FXNP1(22675),NRXN3(87420)	./.	./.	11:119744135	14:78082953	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00923	LINC00923	-/.	-/.	15:97803484	15:97803499	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000251209	ENSG00000251209	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ANK2(22588),RN7SL184P(13031)	TUBGCP6	./.	-/.	4:113406809	22:50239617	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000128159	.	.	upstream	downstream	mismatches(1)	.	.	.
AC068587.4	KDM4C	-/.	+/.	8:12472042	9:7086288	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283674	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF19	TAT-AS1(6223),AC009097.2(39298)	-/.	./.	16:71521075	16:71584410	intron	intergenic	deletion/read-through	0	0	0	85	5	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates	.	.	.
AC079949.3(18465),LINC02376(48094)	RNU7-88P(31659),DIAPH3(153792)	./.	./.	12:127226171	13:59511791	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PDE4D	DSCAM	-/.	-/.	5:59865935	21:40468317	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000113448	ENSG00000171587	.	.	upstream	downstream	mismatches(1)	.	.	.
AC090453.1(66581),AC092818.1(12448)	RNU7-88P(31657),DIAPH3(153794)	./.	./.	8:37054993	13:59511789	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP000255.1(48517),TPT1P1(55417)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784924	21:31785031	intergenic	intergenic	duplication	0	0	0	220	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AC104465.1(74383),AC092810.3(31644)	AC104465.1(74425),AC092810.3(31602)	./.	./.	1:209075859	1:209075901	intergenic	intergenic	duplication/ITD	0	0	0	42	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC091167.2	LINC02864	+/.	-/.	15:90270299	18:73168244	intron	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000261147	ENSG00000263711	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP005436.1	FXNP1(22671),NRXN3(87424)	-/.	./.	11:88092449	14:78082949	intron	intergenic	translocation	0	0	0	718	336	low	.	.	.	.	.	ENSG00000255102	.	.	.	downstream	upstream	low_entropy	.	.	.
FAM155A	NDEL1	-/.	+/.	13:107626774	17:8463508	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000204442	ENSG00000166579	.	.	upstream	downstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	DLG2	./.	-/.	3:103984260	11:85484195	intergenic	intron	translocation	0	0	0	83	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	homopolymer(1)	.	.	.
TTPA(22952),AC011978.1(27218)	AL391684.1(60923),LINC01475(2168)	./.	./.	8:63109005	10:99524182	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02041(107764),SST(111698)	AL391538.1	./.	-/.	3:187557214	6:48760710	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000287137	.	.	upstream	downstream	mismatches(1)	.	.	.
RBMS3(272367),AC025614.2(9790)	LINC02041(107764),SST(111698)	./.	./.	3:30282758	3:187557214	intergenic	intergenic	deletion	0	0	0	0	14	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02041(107764),SST(111698)	CMYA5	./.	+/.	3:187557214	5:79711552	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000164309	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02441(3703),AC140121.1(21253)	C22orf34	./.	-/.	12:128030869	22:49608949	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188511	.	.	upstream	downstream	mismatches(1)	.	.	.
VGLL3	BCRP9(38369),NPM1P22(2713)	-/.	./.	3:86945775	13:67829163	3'UTR	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000206538	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MED6P1(110698),AL353149.1(98608)	BCRP9(38369),NPM1P22(2713)	./.	./.	10:88160521	13:67829163	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BVES	OR5D3P(24082),OR5D17P(1274)	-/.	./.	6:105116218	11:55753703	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112276	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BVES	BCRP9(38369),NPM1P22(2713)	-/.	./.	6:105116218	13:67829163	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112276	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NPM1P10(286385),AL357522.1(173947)	MED6P1(110698),AL353149.1(98608)	./.	./.	6:104313148	10:88160521	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NPM1P10(286385),AL357522.1(173947)	MGAT4C	./.	-/.	6:104313148	12:86025258	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000182050	.	.	downstream	upstream	mismatches(1)	.	.	.
NPM1P10(286385),AL357522.1(173947)	BVES	./.	-/.	6:104313148	6:105116218	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000112276	.	.	downstream	downstream	mismatches(1)	.	.	.
TTC27	NKILA(123114),AL162291.1(59500)	+/.	./.	2:32721381	20:57835894	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000018699	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092674.1	TMC3	-/.	-/.	4:77492334	15:81373299	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000249036	ENSG00000188869	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092674.1	MARK4	-/.	+/.	4:77492350	19:45248941	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000249036	ENSG00000007047	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092625.1(50724),RNU6-1001P(69614)	FP236383.3	./.	+/.	2:155019825	21:8400339	intergenic	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),low_entropy(1)	.	.	.
MMP23B	AC022384.1	+/.	+/.	1:1634420	3:10249513	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000189409	ENSG00000272410	.	.	downstream	upstream	mismatches(1)	.	.	.
MMP23B	TATDN2	+/.	+/.	1:1634420	3:10249513	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000189409	ENSG00000157014	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	ATP9B(2397),NFATC1(15172)	./.	./.	2:218108703	18:79380684	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
ARHGAP39(54109),Metazoa_SRP(23244)	AP001284.1(56343),AP006295.1(275647)	./.	./.	8:144659925	11:80045973	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NKX1-1(21765),AC147067.2(122077)	DACT2(25893),AL138918.1(29027)	./.	./.	4:1428207	6:168345670	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NKX1-1(21442),AC147067.2(122400)	DACT2(25893),AL138918.1(29027)	./.	./.	4:1427884	6:168345670	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104498),GPC1(41722)	NKX1-1(22042),AC147067.2(121800)	./.	./.	2:240393941	4:1428484	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104498),GPC1(41722)	NKX1-1(21765),AC147067.2(122077)	./.	./.	2:240393941	4:1428207	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC106818.1(8857),FAM172A(5270)	MYO18B	./.	+/.	5:93612455	22:25966679	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000133454	.	.	downstream	upstream	mismatches(1)	.	.	.
AC106818.1(8857),FAM172A(5270)	VAV2	./.	-/.	5:93612455	9:133862299	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000160293	.	.	downstream	upstream	mismatches(1)	.	.	.
CHST10	AC106818.1(8857),FAM172A(5270)	-/.	./.	2:100417296	5:93612455	5'UTR	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000115526	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DHFR	RAMP3(65701),AC073968.2(16678)	-/.	./.	5:80650543	7:45252003	intron	intergenic	translocation	0	0	0	8	71	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC106818.1(8857),FAM172A(5270)	C2CD2L	./.	+/.	5:93612455	11:119107901	intergenic	CDS	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000172375	.	.	downstream	upstream	mismatches(1)	.	.	.
DPAGT1	AC106818.1(8857),FAM172A(5270)	-/-	./-	11:119107901	5:93612455	5'UTR	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000172269	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IL6RP1(12014),AL161629.2(13661)	MAPK11	./.	-/.	9:90094583	22:50270476	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000185386	.	.	upstream	downstream	mismatches(1)	.	.	.
AC106818.1(8857),FAM172A(5270)	SAFB2	./.	-/.	5:93612455	19:5622919	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000130254	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(104498),GPC1(41722)	NKX1-1(21442),AC147067.2(122400)	./.	./.	2:240393941	4:1427884	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SHANK2	MXRA5Y(24510),GYG2P1(76114)	-/.	./.	11:70679117	Y:12011896	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000162105	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SHANK2	KIRREL3	-/.	-/.	11:70679117	11:126769918	intron	intron	duplication	0	0	0	5	0	low	.	.	.	.	.	ENSG00000162105	ENSG00000149571	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR5689HG	SHANK2	+/.	-/.	6:10455857	11:70679116	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000229401	ENSG00000162105	.	.	downstream	upstream	mismatches(1)	.	.	.
GPR39	MAP1LC3BP1(11866),SLC24A2(31062)	+/.	./.	2:132557875	9:19476390	intron	intergenic	translocation	0	0	0	10	4	low	.	.	.	.	.	ENSG00000183840	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8437074	21:8442059	intron	intron	inversion/3'-3'	0	0	0	55	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397829	21:8437074	intron	intron	inversion/3'-3'	0	0	0	1126	55	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4500),AP001994.1(77181)	./.	./.	3:137274346	11:119744123	intergenic	intergenic	translocation	0	0	0	71	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AC097374.1	FP236383.3	-/.	+/.	2:94903279	21:8437076	intron	intron	translocation	0	0	0	17	55	low	.	.	.	.	.	ENSG00000259848	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
PRKCH	FP236383.3	+/.	+/.	14:61526875	21:8442059	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000027075	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PRKCH	FP671120.4	+/.	+/.	14:61526875	21:8214795	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000027075	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ANAPC16(37612),DDIT4(452)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	10:72273472	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ANAPC16(37612),DDIT4(452)	FP236383.3	./.	+/.	10:72273472	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ANAPC16(37612),DDIT4(452)	FP671120.4	./.	+/.	10:72273472	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ANAPC16(37612),DDIT4(452)	FP236383.3	./.	+/.	10:72273472	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2091),FP236383.3(121619)	CR392039.1(940),CR392039.3(8126)	./.	./.	21:8259024	21:8988370	intergenic	intergenic	inversion	0	0	0	6	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	CR392039.1(940),CR392039.3(8126)	+/.	./.	21:8442059	21:8988370	intron	intergenic	inversion	0	0	0	5962	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	CR392039.1(940),CR392039.3(8126)	+/.	./.	21:8214795	21:8988370	intron	intergenic	inversion	0	0	0	5263	48	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	CR392039.1(940),CR392039.3(8126)	+/.	./.	21:8397829	21:8988370	intron	intergenic	inversion	0	0	0	1126	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097374.1	CR392039.1(942),CR392039.3(8124)	-/.	./.	2:94903279	21:8988372	intron	intergenic	translocation	0	0	0	17	48	low	.	.	.	.	.	ENSG00000259848	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8209829	21:8442059	intron	intron	inversion/3'-3'	0	0	0	48	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8209829	21:8214795	intron	intron	inversion/3'-3'	0	0	0	48	5263	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097374.1	FP671120.4	-/.	+/.	2:94903279	21:8209831	intron	intron	translocation	0	0	0	17	48	low	.	.	.	.	.	ENSG00000259848	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8392864	21:8442059	intron	intron	inversion/3'-3'	0	0	0	43	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8392864	21:8397829	intron	intron	inversion/3'-3'	0	0	0	43	1126	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097374.1	FP671120.3(3892),FP671120.7(551)	-/.	./.	2:94903279	21:8254041	intron	intergenic	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000259848	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214789	21:8437079	intron	intron	inversion/3'-3'	0	0	0	5263	55	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
FP236383.3	CT867976.1(150110),AC138776.1(197770)	+/.	./.	21:8397819	22:11629753	intron	intergenic	translocation	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	CR392039.1(945),CR392039.3(8121)	+/.	./.	21:8397823	21:8988375	intron	intergenic	inversion	0	0	0	1126	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8209834	21:8397823	intron	intron	inversion/3'-3'	0	0	0	48	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
5_8S_rRNA(2085),FP236383.3(121625)	CR392039.1(945),CR392039.3(8121)	./.	./.	21:8259018	21:8988375	intergenic	intergenic	inversion	0	0	0	5911	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2)	.	.	.
KDM4C	STXBP6(73341),LINC02286(829)	+/.	./.	9:7086288	14:25123638	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2085),FP236383.3(121625)	+/.	./.	21:8209834	21:8259018	intron	intergenic	inversion	0	0	0	48	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2)	.	.	.
5_8S_rRNA(2085),FP236383.3(121625)	FP236383.3	./.	+/.	21:8259018	21:8392869	intergenic	intron	inversion	0	0	0	5911	43	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
5_8S_rRNA(2085),FP236383.3(121625)	FP236383.3	./.	+/.	21:8259018	21:8437079	intergenic	intron	inversion	0	0	0	5911	55	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397823	21:8437079	intron	intron	inversion/3'-3'	0	0	0	1126	55	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
FP236383.3	CR392039.1(945),CR392039.3(8121)	+/.	./.	21:8442053	21:8988375	intron	intergenic	inversion	0	0	0	5962	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8437079	21:8442053	intron	intron	inversion/3'-3'	0	0	0	55	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
FP671120.3(3895),FP671120.7(548)	FP236383.3	./.	+/.	21:8254044	21:8442053	intergenic	intron	inversion	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
AC010970.1	FP671120.4	-/-	+/+	Y:10197463	21:8214785	exon	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000225840	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	CR392039.1(945),CR392039.3(8121)	+/.	./.	21:8214789	21:8988375	intron	intergenic	inversion	0	0	0	5263	48	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8209834	21:8214789	intron	intron	inversion/3'-3'	0	0	0	48	5263	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	duplicates(2)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214789	21:8392869	intron	intron	inversion/3'-3'	0	0	0	5263	43	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
FP671120.3(3895),FP671120.7(548)	FP236383.3	./.	+/.	21:8254044	21:8397823	intergenic	intron	inversion	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
PCAT1	PCAT1	+/.	+/.	8:126750624	8:126750693	intron	intron	duplication/ITD	0	0	0	16	18	low	.	.	.	.	.	ENSG00000253438	ENSG00000253438	.	.	upstream	downstream	low_entropy(1)	.	.	.
CALD1	DGLUCY	+/.	+/.	7:134774802	14:91169812	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000122786	ENSG00000133943	.	.	downstream	downstream	mismatches(1)	.	.	.
FBN2	AMER2	-/.	-/.	5:128333651	13:25171819	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138829	ENSG00000165566	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02612	DHRSX	+/.	-/.	2:150617538	X:2225751	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000169084	.	.	upstream	upstream	mismatches(1)	.	.	.
PRLHR(2934),TOMM22P5(45178)	AMER2	./.	-/.	10:118598582	13:25171819	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165566	.	.	upstream	downstream	mismatches(1)	.	.	.
PAAF1(7029),DNAJB13(12883)	AC022098.1	./.	+/.	11:73938143	19:14137789	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000267169	.	.	downstream	downstream	mismatches(1)	.	.	.
GSE1	AC022098.1	+/.	+/.	16:85385020	19:14137789	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131149	ENSG00000267169	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA2012-AS1	CR392039.1(944),CR392039.3(8122)	-/.	./.	2:202083780	21:8988374	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
KIAA2012	CR392039.1(944),CR392039.3(8122)	+/.	./.	2:202083780	21:8988374	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
KIAA2012-AS1	FP671120.4	-/.	+/.	2:202083780	21:8209833	intron	intron	translocation/3'-3'	0	0	0	0	48	low	.	.	.	.	.	ENSG00000222035	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
KIAA2012	FP671120.4	+/.	+/.	2:202083780	21:8209833	intron	intron	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000182329	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
KIAA2012-AS1	FP236383.3	-/.	+/.	2:202083780	21:8437078	intron	intron	translocation/3'-3'	0	0	0	0	55	low	.	.	.	.	.	ENSG00000222035	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
KIAA2012	FP671120.3(3894),FP671120.7(549)	+/.	./.	2:202083780	21:8254043	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
GDNF-AS1	FP671120.4	+/.	+/.	5:37834632	21:8214783	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000248587	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
FP671120.4	5_8S_rRNA(2196),FP236383.3(121514)	+/.	./.	21:8214788	21:8259129	intron	intergenic	duplication	0	0	0	5263	79	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214788	21:8397934	intron	intron	duplication	0	0	0	5263	79	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL512357.2(6007),AL512357.1(75602)	AL512357.2(6017),AL512357.1(75592)	./.	./.	14:104300928	14:104300938	intergenic	intergenic	duplication/ITD	0	0	0	23	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC091212.1	AC126471.1(154340),AC137768.1(59313)	+/.	./.	3:98945550	12:85722579	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000239462	.	.	.	downstream	downstream	mismatches(1)	.	.	.
EIF3C	FP671120.4	+/.	+/.	16:28724081	21:8214401	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000184110	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC145285.4	FP671120.4	-/.	+/.	16:28724081	21:8214401	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000261419	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
NBEA	FP236383.3	+/.	+/.	13:35284832	21:8441658	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000172915	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	CT867976.1(150110),AC138776.1(197770)	+/.	./.	21:8214785	22:11629753	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC009093.11	FP236383.3	+/.	+/.	16:28391222	21:8441659	intron	intron	translocation	0	0	0	6	546	low	.	.	.	.	.	ENSG00000288630	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC145285.4	FP236383.3	-/.	+/.	16:28724081	21:8441659	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000261419	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	NBEA	-/.	+/.	11:85484192	13:35284832	intron	intron	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000172915	.	.	upstream	upstream	mismatches(1)	.	.	.
AC090502.3	EIF3CL	+/.	-/.	12:74170989	16:28391222	exon	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000258320	ENSG00000205609	.	.	upstream	downstream	mismatches(1)	.	.	.
AC090502.3	AC145285.4	+/.	-/.	12:74170989	16:28724081	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258320	ENSG00000261419	.	.	upstream	upstream	mismatches(1)	.	.	.
AC090502.3	AC009093.11	+/.	+/.	12:74170989	16:28724081	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258320	ENSG00000288630	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009093.11	5_8S_rRNA(1691),FP236383.3(122019)	+/.	./.	16:28724081	21:8258624	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000288630	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NBEA	FP236383.3	+/.	+/.	13:35284832	21:8397438	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000172915	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF3CL	FP236383.3	-/.	+/.	16:28391222	21:8397439	intron	intron	translocation/3'-3'	0	0	0	6	543	low	.	.	.	.	.	ENSG00000205609	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009093.11	FP236383.3	+/.	+/.	16:28391222	21:8397439	intron	intron	translocation	0	0	0	6	543	low	.	.	.	.	.	ENSG00000288630	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
EIF3C	FP236383.3	+/.	+/.	16:28724081	21:8397439	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000184110	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NBEA	FP671120.4	+/.	+/.	13:35284832	21:8214400	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000172915	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009093.11	FP671120.4	+/.	+/.	16:28391222	21:8214401	intron	intron	translocation	0	0	0	6	8	low	.	.	.	.	.	ENSG00000288630	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DLG2	AC009093.11	-/.	+/.	11:85484193	16:28724081	intron	intron	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000288630	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262504	6:42262603	intron	intron	duplication/ITD	0	0	0	2239	1284	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ZNF638	CR392039.1(942),CR392039.3(8124)	+/.	./.	2:71338685	21:8988372	intron	intergenic	translocation	0	0	0	2	48	low	.	.	.	.	.	ENSG00000075292	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF638	FP671120.4	+/.	+/.	2:71338685	21:8209831	intron	intron	translocation	0	0	0	2	48	low	.	.	.	.	.	ENSG00000075292	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF638	FP671120.3(3892),FP671120.7(551)	+/.	./.	2:71338685	21:8254041	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000075292	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ARAFP1(6125),AC092634.7(15210)	AL356807.1(31408),MTND4P33(889)	./.	./.	7:63944634	14:84171952	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PRKCZ	DACT2(25892),AL138918.1(29028)	+/.	./.	1:2178892	6:168345669	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000067606	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	NDUFA4L2(1285),STAC3(1453)	./.	./.	6:168345669	12:57242000	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PRKCZ	U3(104497),GPC1(41723)	+/.	./.	1:2178892	2:240393940	intron	intergenic	translocation	0	0	0	2	357	low	.	.	.	.	.	ENSG00000067606	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PRPF31	FP236383.3	+/.	+/.	19:54127993	21:8442058	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000105618	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NOL9	ERCC8	-/.	-/.	1:6544538	5:60944731	intron	intron	translocation	0	0	0	1	8	low	.	.	.	.	.	ENSG00000162408	ENSG00000049167	.	.	upstream	downstream	mismatches	.	.	.
ERCC8	PIK3IP1	-/.	-/.	5:60944731	22:31291464	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000049167	ENSG00000100100	.	.	downstream	upstream	mismatches	.	.	.
ERCC8	5_8S_rRNA(2174),FP236383.3(121536)	-/.	./.	5:60944731	21:8259107	intron	intergenic	translocation	0	0	0	8	44	low	.	.	.	.	.	ENSG00000049167	.	.	.	downstream	upstream	mismatches	.	.	.
ERCC8	FP236383.3	-/.	+/.	5:60944731	21:8397912	intron	intron	translocation/3'-3'	0	0	0	8	79	low	.	.	.	.	.	ENSG00000049167	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
UPRT	AC016991.1(31537),LINC00279(1233)	+/.	./.	X:75223384	Y:8549285	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000094841	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL033504.1	AP003390.1(4430),AP001994.1(77251)	+/.	./.	6:147790824	11:119744053	intron	intergenic	translocation	0	0	0	25	3458	low	.	.	.	.	.	ENSG00000227681	.	.	.	downstream	downstream	mismatches	.	.	.
CFAP58	AP003390.1(4430),AP001994.1(77251)	+/.	./.	10:104396386	11:119744053	intron	intergenic	translocation	0	0	0	561	3458	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	mismatches	.	.	.
SIM1	AC244102.4	-/.	-/.	6:100458060	X:152576450	intron	intron	translocation	0	0	0	21	7	low	.	.	.	.	.	ENSG00000112246	ENSG00000287394	.	.	downstream	upstream	mismatches	.	.	.
GPC3	AC244102.4	-/.	-/.	X:133661622	X:152576450	intron	intron	deletion	0	0	0	143	7	low	.	.	.	.	.	ENSG00000147257	ENSG00000287394	.	.	downstream	upstream	mismatches	.	.	.
ERI3	AL137785.1(39816),MPPE1P1(44525)	-/.	./.	1:44320094	14:89065623	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF503-AS1	DDB2	+/.	+/.	10:75249181	11:47233105	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000226051	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
EMBP1	AC012060.1(92676),LINC02248(36443)	+/.	./.	1:121526490	15:26358594	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000231752	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ERI3	EMBP1	-/.	+/.	1:44320094	1:121526490	intron	intron	inversion	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000231752	.	.	downstream	downstream	mismatches(1)	.	.	.
AL035401.1	AC012060.1(92676),LINC02248(36443)	-/.	./.	6:22926802	15:26358594	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000233358	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ERI3	AL035401.1	-/.	-/.	1:44320094	6:22926802	intron	intron	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000233358	.	.	downstream	upstream	mismatches(1)	.	.	.
VTI1A	C16orf72(26880),RPL21P119(7887)	+/.	./.	10:112579141	16:9148515	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000151532	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL035401.1	AP001599.1	-/.	+/.	6:22926803	21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000233358	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
AL035401.1	DDB2	-/.	+/.	6:22926806	11:47233105	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000233358	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4503),AP001994.1(77178)	+/.	./.	1:225078862	11:119744126	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
ANKRD6	AC012060.1(92676),LINC02248(36443)	+/.	./.	6:89555917	15:26358594	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000135299	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ANKRD6	AP001599.1	+/.	+/.	6:89555916	21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000135299	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	COMT	+/.	+/.	11:47233105	22:19954285	intron	intron	translocation/5'-5'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000093010	.	.	downstream	downstream	mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	CCDC188(7582),AC007663.2(40092)	./.	./.	15:26358594	22:20158637	intergenic	intergenic	translocation	0	0	0	71	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ERI3	CCDC188(7582),AC007663.2(40092)	-/.	./.	1:44320094	22:20158637	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001599.1	CCDC188(7581),AC007663.2(40093)	+/.	./.	21:26914103	22:20158636	intron	intergenic	translocation	0	0	0	167	0	low	.	.	.	.	.	ENSG00000223563	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC006288.1(46012),LINC01613(364916)	DDB2	./.	+/.	9:119570137	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	AC068722.1(19664),AC068714.1(148460)	./.	./.	15:26358594	15:45950733	intergenic	intergenic	deletion	0	0	0	71	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ERI3	AC068722.1(19664),AC068714.1(148460)	-/.	./.	1:44320094	15:45950733	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ERI3	IMPDH1P8(85468),AC090946.1(4964)	-/.	./.	1:44320094	3:15965039	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IMPDH1P8(85467),AC090946.1(4965)	AP001599.1	./.	+/.	3:15965038	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
IMPDH1P8(85464),AC090946.1(4968)	DDB2	./.	+/.	3:15965035	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
AC012494.1	NDUFAF4(8228),RN7SL509P(8580)	-/.	./.	2:77723208	6:96906119	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000227088	.	.	.	downstream	upstream	mismatches(2)	.	.	.
AP003390.1(4495),AP001994.1(77186)	GPC3	./.	-/.	11:119744118	X:133661643	intergenic	intron	translocation	0	0	0	3583	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AP003390.1(4501),AP001994.1(77180)	GPC3	./.	-/.	11:119744124	X:133661643	intergenic	intron	translocation	0	0	0	3002	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AP001823.1(3430),ELMOD1(758)	GPC3	./.	-/.	11:107590333	X:133661643	intergenic	intron	translocation	0	0	0	1909	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
AP001823.1(3437),ELMOD1(751)	GPC3	./.	-/.	11:107590340	X:133661643	intergenic	intron	translocation	0	0	0	1909	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785696	X:133661643	intron	intron	translocation/3'-3'	0	0	0	496	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785678	X:133661643	intron	intron	translocation/3'-3'	0	0	0	466	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785684	X:133661643	intron	intron	translocation/3'-3'	0	0	0	496	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785686	X:133661643	intron	intron	translocation/3'-3'	0	0	0	496	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785688	X:133661643	intron	intron	translocation/3'-3'	0	0	0	496	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
AP001823.1(3435),ELMOD1(753)	GPC3	./.	-/.	11:107590338	X:133661643	intergenic	intron	translocation	0	0	0	1909	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785694	X:133661643	intron	intron	translocation/3'-3'	0	0	0	496	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262569	X:133661643	intron	intron	translocation/3'-3'	0	0	0	2136	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262571	X:133661643	intron	intron	translocation/3'-3'	0	0	0	2136	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262575	X:133661643	intron	intron	translocation/3'-3'	0	0	0	2136	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262577	X:133661643	intron	intron	translocation/3'-3'	0	0	0	2136	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262579	X:133661643	intron	intron	translocation/3'-3'	0	0	0	2136	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214882	21:8417190	intron	intron	duplication	0	0	0	0	1	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3433),ELMOD1(755)	GPC3	./.	-/.	11:107590336	X:133661643	intergenic	intron	translocation	0	0	0	1909	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262583	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262591	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262593	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262599	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AP003390.1(4502),AP001994.1(77179)	GPC3	./.	-/.	11:119744125	X:133661643	intergenic	intron	translocation	0	0	0	3002	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AC109466.1	UNC5A	+/.	+/.	5:164476683	5:176847697	intron	intron	inversion/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000241956	ENSG00000113763	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL590807.1	FP671120.7(393),5_8S_rRNA(874)	-/.	./.	13:80707413	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286746	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
GAD2(21428),AL355798.1(53048)	FP236383.3	./.	+/.	10:26325986	21:8441451	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DDB2	AF241726.1	+/.	+/.	11:47233105	X:38465345	intron	intron	translocation/5'-5'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000250349	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	AF241726.1	+/.	+/.	21:8211701	X:38465343	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000250349	.	.	upstream	downstream	homopolymer(1)	.	.	.
DDB2	Y_RNA(10825),TBX3(1368)	+/.	./.	11:47233105	12:114668887	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(10827),TBX3(1366)	FP671120.7(393),5_8S_rRNA(874)	./.	./.	12:114668889	21:8255907	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
Y_RNA(10827),TBX3(1366)	FP671120.4	./.	+/.	12:114668889	21:8211701	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
Y_RNA(10827),TBX3(1366)	FP236383.3	./.	+/.	12:114668889	21:8394736	intergenic	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP236383.3	AF241726.1	+/.	+/.	21:8394736	X:38465343	intron	intron	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000250349	.	.	upstream	downstream	homopolymer(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	19:30664203	19:30664262	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000198597	ENSG00000198597	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF536	ZNF536	+/.	+/.	19:30664229	19:30664262	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000198597	ENSG00000198597	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL354809.1	ACSM1	+/.	-/.	13:39108817	16:20684033	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000273507	ENSG00000166743	.	.	upstream	upstream	mismatches(1)	.	.	.
PROP1(2892),FAM153CP(7214)	LRRC63(12169),AL139801.1(765)	./.	./.	5:177999134	13:46289535	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2081),FP236383.3(121629)	CT867976.1(150110),AC138776.1(197770)	./.	./.	21:8259014	22:11629753	intergenic	intergenic	translocation	0	0	0	5911	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PROP1(2952),FAM153CP(7154)	LRRC63(12169),AL139801.1(765)	./.	./.	5:177999194	13:46289535	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PROP1(3012),FAM153CP(7094)	LRRC63(12169),AL139801.1(765)	./.	./.	5:177999254	13:46289535	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683466	15:81683475	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683466	15:81683475	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683466	15:81683475	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683466	15:81683475	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683466	15:81683475	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683466	15:81683475	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683466	15:81683475	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683466	15:81683475	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
MYO5B	MYO5B	-/.	-/.	18:50122589	18:50122683	intron	intron	duplication/ITD	0	0	0	0	13	low	.	.	.	.	.	ENSG00000167306	ENSG00000167306	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ERBB4	ERBB4	-/.	-/.	2:212188186	2:212188199	intron	intron	duplication/ITD	0	0	0	9	0	low	.	.	.	.	.	ENSG00000178568	ENSG00000178568	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
COMETT	COMETT	-/.	-/.	7:116638075	7:116638084	intron	intron	duplication/ITD	0	0	0	63	62	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(8),low_entropy(1)	.	.	.
USP9YP6	USP9YP6	-/.	-/.	Y:17913555	Y:17913568	intron	intron	duplication/ITD	0	0	0	26	24	low	.	.	.	.	.	ENSG00000226116	ENSG00000226116	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
Z93929.1(11432),MDM4P1(21584)	Z93929.1(11445),MDM4P1(21571)	./.	./.	X:17911765	X:17911778	intergenic	intergenic	duplication/ITD	0	0	0	24	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ENPP7P2	LINC02018	-/.	+/.	3:75466094	3:75466109	intron	intron	duplication/5'-5'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000239959	ENSG00000272690	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02018	ENPP7P2	+/.	-/.	3:75466094	3:75466109	intron	intron	duplication/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000272690	ENSG00000239959	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02018	LINC02018	+/.	+/.	3:75466094	3:75466109	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000272690	ENSG00000272690	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL359636.2	PHKB	+/.	+/.	9:122558263	16:47491353	intron	intron	translocation/5'-5'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000234156	ENSG00000102893	.	.	downstream	downstream	mismatches(1)	.	.	.
AC016687.3	PHKB	-/.	+/.	4:34005923	16:47491353	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000250954	ENSG00000102893	.	.	downstream	downstream	mismatches(1)	.	.	.
PHKB	UBBP4	+/.	+/.	16:47491353	17:22095184	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000102893	ENSG00000263563	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025442.2(9210),SREK1(36824)	FZD10	./.	+/.	5:66103147	12:130163271	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111432	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF692	AC025442.2(9210),SREK1(36824)	-/-	./+	1:248858977	5:66103147	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171163	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025442.2(9210),SREK1(36824)	LINC02702(61526),BUD13(28349)	./.	./.	5:66103147	11:116719821	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL589739.1	AC025442.2(9210),SREK1(36824)	-/-	./+	1:2326507	5:66103147	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272161	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFAF4(8228),RN7SL509P(8580)	TFDP1P3(66350),AC023968.1(41688)	./.	./.	6:96906119	15:79626654	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02466	AC087627.1	-/.	+/.	4:129613123	8:74096403	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000246876	ENSG00000253983	.	.	upstream	downstream	mismatches(1)	.	.	.
AL138720.1	FP236383.3	-/.	+/.	6:14828424	21:8389451	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000234261	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
OR2T12	FP236383.3	-/.	+/.	1:248296452	21:8389451	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177201	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL138720.1	FP671120.4	-/.	+/.	6:14828424	21:8206404	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000234261	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
OR2T12	FP671120.4	-/.	+/.	1:248296452	21:8206404	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177201	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL138720.1	FP236383.3	-/.	+/.	6:14828424	21:8433638	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000234261	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
OR2T12	FP236383.3	-/.	+/.	1:248296452	21:8433638	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177201	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
MRC2	TCHP	+/+	+/-	17:62689981	12:109902078	CDS	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	ENSG00000139437	.	.	downstream	downstream	mismatches(1)	.	.	.
NRIP3	INSRR	-/-	-/+	11:9003963	1:156849597	5'UTR	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000175352	ENSG00000027644	.	.	upstream	upstream	mismatches(1)	.	.	.
INSRR	SBNO2	-/.	-/.	1:156849597	19:1108540	intron	CDS	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000027644	ENSG00000064932	.	.	upstream	downstream	mismatches(1)	.	.	.
NTRK1	SBNO2	+/.	-/.	1:156849597	19:1108540	intron	CDS	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000198400	ENSG00000064932	.	.	upstream	downstream	mismatches(1)	.	.	.
PHIP	TLE4	-/.	+/.	6:78947958	9:79572888	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000146247	ENSG00000106829	.	.	downstream	downstream	homopolymer(1)	.	.	.
SFRP4	SLC2A6(8613),MYMK(26846)	-/.	./.	7:37990758	9:133487740	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106483	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NRIP3	SFRP4	-/-	-/-	11:9003963	7:37990758	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Fz_domain(100%),UNC-6/NTR/C345C_module(100%)	.	.	ENSG00000175352	ENSG00000106483	.	.	upstream	downstream	mismatches(1)	.	.	.
NRIP3	TCHP	-/-	+/-	11:9003963	12:109902078	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000139437	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.22	TCHP	-/.	+/.	7:117609	12:109902078	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000139437	.	.	upstream	downstream	mismatches(1)	.	.	.
INSRR	SLC2A6(8613),MYMK(26846)	-/.	./.	1:156849597	9:133487740	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000027644	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NTRK1	SLC2A6(8613),MYMK(26846)	+/.	./.	1:156849597	9:133487740	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000198400	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GAPDHP36(89380),RALBP1P1(20619)	LINC00972	./.	+/.	3:180302488	7:85484833	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000225128	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL121776.1	SBNO2	+/+	-/+	20:47071971	19:1146080	exon	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000239783	ENSG00000064932	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00972	LINC02745	+/.	-/.	7:85484833	11:42029389	intron	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000225128	ENSG00000255300	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL590807.1	FP671120.4	-/.	+/.	13:80707413	21:8211701	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286746	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
OR2AQ1P(889),OR10AA1P(11297)	GMDS	./.	-/.	1:158797102	6:1766538	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000112699	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01098(9040),RNU1-45P(78710)	KDM4C	./.	+/.	4:178038011	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022535.1	C10orf90	-/.	-/.	10:4421314	10:126566285	intron	intron	deletion	0	0	0	10	0	low	.	.	.	.	.	ENSG00000230096	ENSG00000154493	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
C10orf90	DSCAS	-/.	+/.	10:126566285	18:31114660	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154493	ENSG00000265888	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DUSP3	AC022535.1	-/-	-/-	17:43774754	10:4421315	CDS	intron	translocation	0	0	0	0	10	low	.	.	Dual_specificity_phosphatase__catalytic_domain(48%)|	.	.	ENSG00000108861	ENSG00000230096	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DUSP3	DSCAS	-/-	+/-	17:43774754	18:31114661	CDS	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	Dual_specificity_phosphatase__catalytic_domain(48%)|	.	.	ENSG00000108861	ENSG00000265888	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
KANSL3	AC022535.1	-/.	-/.	2:96640965	10:4421314	intron	intron	translocation/3'-3'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000114982	ENSG00000230096	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
OR2AQ1P(889),OR10AA1P(11297)	KANSL3	./.	-/.	1:158797102	2:96640964	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000114982	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AFF3	AC022535.1	-/.	-/.	2:99559960	10:4421314	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000144218	ENSG00000230096	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DUSP3	OR2AQ1P(889),OR10AA1P(11297)	-/-	./-	17:43774754	1:158797102	CDS	intergenic	translocation	0	0	0	0	10	low	.	.	Dual_specificity_phosphatase__catalytic_domain(48%)|	.	.	ENSG00000108861	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLEKHG1	PLEKHG1	+/.	+/.	6:150674629	6:150674644	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000120278	ENSG00000120278	.	.	upstream	downstream	low_entropy(2)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392818	1:90392827	intron	intron	duplication/ITD	0	0	0	312	308	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FP236383.3	Y_RNA(5800),MAP7D2(15754)	+/.	./.	21:8399905	X:19990959	intron	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392807	1:90392816	intron	intron	duplication/ITD	0	0	0	312	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392822	1:90392831	intron	intron	duplication/ITD	0	0	0	311	308	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL358053.1(206642),AL591644.1(221039)	AL358053.1(206722),AL591644.1(220959)	./.	./.	9:1756745	9:1756825	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AL358053.1(206646),AL591644.1(221035)	AL358053.1(206727),AL591644.1(220954)	./.	./.	9:1756749	9:1756830	intergenic	intergenic	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392805	1:90392814	intron	intron	duplication/ITD	0	0	0	312	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392814	1:90392823	intron	intron	duplication/ITD	0	0	0	312	308	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
ZNF462	AP003390.1(4495),AP001994.1(77186)	+/.	./.	9:106864120	11:119744118	intron	intergenic	translocation	0	0	0	39	3583	low	.	.	.	.	.	ENSG00000148143	.	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4495),AP001994.1(77186)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744118	15:44288393	intergenic	intergenic	translocation	0	0	0	3583	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
ZNF462	AP003390.1(4493),AP001994.1(77188)	+/.	./.	9:106864120	11:119744116	intron	intergenic	translocation	0	0	0	39	3583	low	.	.	.	.	.	ENSG00000148143	.	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4493),AP001994.1(77188)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744116	15:44288393	intergenic	intergenic	translocation	0	0	0	3583	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
ZNF442	FP671120.4	-/.	+/.	19:12353540	21:8216779	intron	intron	translocation	0	0	0	5	2	low	.	.	.	.	.	ENSG00000198342	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MCTP1	SVIL	-/.	-/.	5:94947578	10:29509375	intron	intron	translocation	0	0	0	15	6	low	.	.	.	.	.	ENSG00000175471	ENSG00000197321	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02235	AP003390.1(4491),AP001994.1(77190)	+/.	./.	8:81842439	11:119744114	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262580	11:88092332	intron	intron	translocation	0	0	0	2136	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
MCTP1	ZNF462	-/.	+/.	5:94947578	9:106864046	intron	intron	translocation	0	0	0	15	38	low	.	.	.	.	.	ENSG00000175471	ENSG00000148143	.	.	upstream	upstream	mismatches(1)	.	.	.
MCTP1	ZNF462	-/.	+/.	5:94947578	9:106864048	intron	intron	translocation	0	0	0	15	38	low	.	.	.	.	.	ENSG00000175471	ENSG00000148143	.	.	upstream	upstream	mismatches(1)	.	.	.
MCTP1	ZNF462	-/.	+/.	5:94947578	9:106864052	intron	intron	translocation	0	0	0	15	38	low	.	.	.	.	.	ENSG00000175471	ENSG00000148143	.	.	upstream	upstream	mismatches(1)	.	.	.
MCTP1	ZNF462	-/.	+/.	5:94947578	9:106864054	intron	intron	translocation	0	0	0	15	38	low	.	.	.	.	.	ENSG00000175471	ENSG00000148143	.	.	upstream	upstream	mismatches(1)	.	.	.
MCTP1	ZNF462	-/.	+/.	5:94947578	9:106864058	intron	intron	translocation	0	0	0	15	38	low	.	.	.	.	.	ENSG00000175471	ENSG00000148143	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1374317	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
MCTP1	FRMD5(93315),GOLM2(133)	-/.	./.	5:94947578	15:44288586	intron	intergenic	translocation	0	0	0	15	3	low	.	.	.	.	.	ENSG00000175471	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF462	AP003390.1(4491),AP001994.1(77190)	+/.	./.	9:106864120	11:119744114	intron	intergenic	translocation	0	0	0	39	3583	low	.	.	.	.	.	ENSG00000148143	.	.	.	downstream	downstream	low_entropy	.	.	.
MCTP1	FRMD5(93313),GOLM2(135)	-/.	./.	5:94947578	15:44288584	intron	intergenic	translocation	0	0	0	15	3	low	.	.	.	.	.	ENSG00000175471	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MCTP1	FRMD5(93311),GOLM2(137)	-/.	./.	5:94947578	15:44288582	intron	intergenic	translocation	0	0	0	15	3	low	.	.	.	.	.	ENSG00000175471	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF462	LINC02620	+/.	-/.	9:106864120	10:104479914	intron	intron	translocation	0	0	0	39	1761	low	.	.	.	.	.	ENSG00000148143	ENSG00000225768	.	.	downstream	downstream	low_entropy	.	.	.
SNX16	LINC02620	-/.	-/.	8:81842439	10:104479907	intron	intron	translocation	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000104497	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
AP003390.1(4498),AP001994.1(77183)	FP236383.3	./.	+/.	11:119744121	21:8414016	intergenic	intron	translocation	0	0	0	3002	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
LINC02620	FRMD5(93122),GOLM2(326)	-/.	./.	10:104479907	15:44288393	intron	intergenic	translocation	0	0	0	1761	22	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	duplicates	.	.	.
AC092100.1	AC084756.2	-/.	-/.	7:69204253	15:50661539	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000225718	ENSG00000288645	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF462	AP003390.1(4502),AP001994.1(77179)	+/.	./.	9:106864120	11:119744125	intron	intergenic	translocation	0	0	0	39	3002	low	.	.	.	.	.	ENSG00000148143	.	.	.	downstream	downstream	low_entropy	.	.	.
ZNF462	AP003390.1(4506),AP001994.1(77175)	+/.	./.	9:106864120	11:119744129	intron	intergenic	translocation	0	0	0	39	3002	low	.	.	.	.	.	ENSG00000148143	.	.	.	downstream	downstream	low_entropy	.	.	.
AL158151.1	FP671120.4	+/.	+/.	9:129178735	21:8214795	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000204055	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4491),AP001994.1(77190)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744114	15:44288393	intergenic	intergenic	translocation	0	0	0	3583	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
SNX16	AP003390.1(4501),AP001994.1(77180)	-/.	./.	8:81842439	11:119744124	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
AP003390.1(4501),AP001994.1(77180)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744124	15:44288393	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
AC021087.4(328),CCDC127(199)	FP236383.3	./.	+/.	5:196669	21:8442072	intergenic	intron	translocation	0	0	0	12	6003	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches	.	.	.
SNX16	AP003390.1(4497),AP001994.1(77184)	-/.	./.	8:81842439	11:119744120	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
ZNF462	AP003390.1(4497),AP001994.1(77184)	+/.	./.	9:106864120	11:119744120	intron	intergenic	translocation	0	0	0	39	3583	low	.	.	.	.	.	ENSG00000148143	.	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4497),AP001994.1(77184)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744120	15:44288393	intergenic	intergenic	translocation	0	0	0	3583	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
SNX16	AP003390.1(4495),AP001994.1(77186)	-/.	./.	8:81842439	11:119744118	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
AC021087.4(328),CCDC127(199)	FP236383.3	./.	+/.	5:196669	21:8397842	intergenic	intron	translocation	0	0	0	12	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches	.	.	.
LINC02669	LINC02669	-/.	-/.	10:3470845	10:3470941	intron	intron	duplication/ITD	0	0	0	17	16	low	.	.	.	.	.	ENSG00000233321	ENSG00000233321	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092344	11:88092443	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092342	11:88092441	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
HOXD3	LINC00668(88),RNU6-916P(6858)	+/.	./.	2:176158426	18:6930054	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000128652	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004540.1	AC004540.1	+/.	+/.	7:26469907	7:26469916	intron	intron	duplication/ITD	0	0	0	18	12	low	.	.	.	.	.	ENSG00000214870	ENSG00000214870	.	.	upstream	downstream	low_entropy(1)	.	.	.
KRT8P37(31734),CHCHD3P1(73093)	PAXBP1(182),C21orf62-AS1(126)	./.	./.	10:8546840	21:32771974	intergenic	intergenic	translocation	0	0	0	7	122	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy	.	.	.
AL713851.1(71448),AL355361.1(34632)	WDR95P	./.	+/.	10:2690187	13:31064572	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000231894	.	.	upstream	downstream	mismatches(1)	.	.	.
MAGI2	AL713851.1(71448),AL355361.1(34632)	-/.	./.	7:78608090	10:2690187	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187391	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091078.1	5_8S_rRNA(2072),FP236383.3(121638)	+/.	./.	15:93232876	21:8259005	intron	intergenic	translocation	0	0	0	8	5911	low	.	.	.	.	.	ENSG00000257060	.	.	.	upstream	upstream	mismatches	.	.	.
AC091078.1	FP671120.4	+/.	+/.	15:93232876	21:8214776	intron	intron	translocation/3'-3'	0	0	0	8	6035	low	.	.	.	.	.	ENSG00000257060	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
AC021087.4(356),CCDC127(171)	FP236383.3	./.	+/.	5:196697	21:8397810	intergenic	intron	translocation	0	0	0	12	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
PACS2	FP236383.3	+/.	+/.	14:105325169	21:8397824	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000179364	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	11:82143078	11:82143174	intron	intron	duplication/ITD	0	0	0	1119	1095	low	.	.	.	.	.	ENSG00000245832	ENSG00000245832	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3429),ELMOD1(759)	AP001823.1(3439),ELMOD1(749)	./.	./.	11:107590332	11:107590342	intergenic	intergenic	duplication/ITD	0	0	0	1909	1408	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479914	X:133661640	intron	intron	translocation/3'-3'	0	0	0	1761	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	duplicates	.	.	.
FXNP1(22674),NRXN3(87421)	FXNP1(22772),NRXN3(87323)	./.	./.	14:78082952	14:78083050	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZNF8-ERVK3-1	AC018678.1(115418),RNU6-692P(140877)	+/+	./-	19:58279012	2:147267465	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000267216	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF8	AC018678.1(115418),RNU6-692P(140877)	+/+	./-	19:58279012	2:147267465	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000278129	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01503	FP236383.3	+/.	+/.	9:129355194	21:8442058	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000233901	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNAB2	AL355306.2(234698),AL499605.1(185080)	+/.	./.	1:6035979	1:106359262	exon	intergenic	duplication	0	0	0	10	0	low	.	.	.	.	.	ENSG00000069424	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01503	FP671120.4	+/.	+/.	9:129355194	21:8214794	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000233901	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01503	FP236383.3	+/.	+/.	9:129355194	21:8397828	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000233901	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01503	5_8S_rRNA(2090),FP236383.3(121620)	+/.	./.	9:129355194	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000233901	.	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1992),DUX4L32(19586)	UBE2V1P9(93940),RNU6-555P(213392)	./.	./.	20:29299238	X:90383843	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
IL22(13007),MDM1(5832)	IL22(13061),MDM1(5778)	./.	./.	12:68266611	12:68266665	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216922	21:8398540	intron	intron	inversion/3'-3'	0	0	0	10	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL355674.1(53822),RORB-AS1(47151)	AL355674.1(53835),RORB-AS1(47138)	./.	./.	9:74438400	9:74438413	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CLIC5	CLIC5	-/.	-/.	6:45974523	6:45974536	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000112782	ENSG00000112782	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01393	LINC01392	+/.	-/.	7:115109456	7:115109469	intron	intron	duplication/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000225535	ENSG00000233607	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01393	LINC01393	+/.	+/.	7:115109456	7:115109469	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000225535	ENSG00000225535	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC133644.2	AC133644.2	+/.	+/.	2:87645544	2:87645597	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000284879	ENSG00000284879	.	.	upstream	downstream	low_entropy(1)	.	.	.
NALCN-AS1	SGSM3	+/.	+/.	13:100887356	22:40390963	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000233009	ENSG00000100359	.	.	upstream	downstream	mismatches(1)	.	.	.
NALCN-AS1	AL022238.3	+/.	+/.	13:100887356	22:40390963	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000233009	ENSG00000284431	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01933(62445),AC008571.2(42104)	ZNF236(223),AC093330.1(1566)	./.	./.	5:152332894	18:76973124	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SERINC2	LINC01933(62420),AC008571.2(42129)	+/+	./+	1:31434097	5:152332869	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	Serine_incorporator_(Serinc)(92%)|	.	.	ENSG00000168528	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PAX3	FP236383.3	-/.	+/.	2:222298765	21:8438956	5'UTR	intron	translocation/3'-3'	0	0	0	17	139	low	.	.	.	.	.	ENSG00000135903	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
PAX3	FP671120.4	-/.	+/.	2:222298765	21:8211708	5'UTR	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135903	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
PAX3	AC012060.1(92675),LINC02248(36444)	-/.	./.	2:222298765	15:26358593	5'UTR	intergenic	translocation	0	0	0	17	71	low	.	.	.	.	.	ENSG00000135903	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
PAX3	AP003472.1	-/.	-/.	2:222298765	8:100416429	5'UTR	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135903	ENSG00000253824	.	.	downstream	downstream	homopolymer(1)	.	.	.
PAX3	AP001599.1	-/.	+/.	2:222298765	21:26914101	5'UTR	intron	translocation	0	0	0	17	167	low	.	.	.	.	.	ENSG00000135903	ENSG00000223563	.	.	downstream	downstream	homopolymer(1)	.	.	.
WWC1	DOP1B	+/.	+/.	5:168337914	21:36200562	intron	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	ENSG00000142197	.	.	upstream	downstream	mismatches(1)	.	.	.
WWC1	AC137894.4(10443),AC137894.1(330)	+/.	./.	5:168337914	11:528577	intron	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	.	.	.	upstream	upstream	mismatches(1)	.	.	.
WWC1	KPNA3	+/.	-/.	5:168337914	13:49792376	intron	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	ENSG00000102753	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093702.1(11519),LINC01121(139629)	WWC1	./.	+/.	2:45025187	5:168337914	intergenic	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	.	ENSG00000113645	.	.	upstream	upstream	mismatches(1)	.	.	.
WWC1	THRA	+/.	+/.	5:168337914	17:40088205	intron	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	ENSG00000126351	.	.	upstream	downstream	mismatches(1)	.	.	.
WWC1	SCARF2	+/.	-/.	5:168337914	22:20426175	intron	CDS	translocation/3'-3'	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	ENSG00000244486	.	.	upstream	downstream	mismatches(1)	.	.	.
WWC1	ARNTL2	+/.	+/.	5:168337914	12:27333336	intron	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	ENSG00000029153	.	.	upstream	downstream	mismatches(1)	.	.	.
WWC1	AC079031.2(26687),FBRSL1(8)	+/.	./.	5:168337914	12:132489543	intron	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	.	.	.	upstream	downstream	mismatches(1)	.	.	.
WWC1	LARP4B	+/.	-/.	5:168337914	10:921518	intron	intron	translocation/3'-3'	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	ENSG00000107929	.	.	upstream	downstream	mismatches(1)	.	.	.
WWC1	VPS41(14371),POU6F2(31144)	+/.	./.	5:168337914	7:38946765	intron	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PTPRG	WWC1	+/.	+/.	3:61563136	5:168337914	intron	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	ENSG00000144724	ENSG00000113645	.	.	downstream	upstream	mismatches(1)	.	.	.
PAX3	WWC1	-/.	+/.	2:222298763	5:168337914	5'UTR	intron	translocation/3'-3'	0	0	0	17	16	low	.	.	.	.	.	ENSG00000135903	ENSG00000113645	.	.	downstream	upstream	mismatches(1)	.	.	.
AL132639.2	SHISAL1(45167),Z85994.1(7433)	-/.	./.	14:39266776	22:44358118	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000258940	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CABLES1	AC064801.2	+/+	+/+	18:23135921	18:62551950	CDS	exon	deletion	0	0	0	1	0	low	.	.	.	.	.	ENSG00000134508	ENSG00000279236	.	.	downstream	upstream	mismatches(1)	.	.	.
PAXBP1(69),C21orf62-AS1(239)	PAXBP1(78),C21orf62-AS1(230)	./.	./.	21:32771861	21:32771870	intergenic	intergenic	duplication/ITD	0	0	0	494	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
RGPD5	FP236383.3	+/.	+/.	2:109794607	21:8444104	intron	intron	translocation/3'-3'	0	0	0	4	22	low	.	.	.	.	.	ENSG00000015568	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RGPD5	FP236383.3	+/.	+/.	2:109794607	21:8399869	intron	intron	translocation/3'-3'	0	0	0	4	29	low	.	.	.	.	.	ENSG00000015568	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RGPD5	FP671120.4	+/.	+/.	2:109794607	21:8216835	intron	intron	translocation/3'-3'	0	0	0	4	11	low	.	.	.	.	.	ENSG00000015568	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8216834	21:8216850	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916550	21:8215023	intron	intron	translocation/5'-5'	0	0	0	47	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	downstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262466	6:42262473	intron	intron	duplication/ITD	0	0	0	2363	14	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(2)	.	.	.
AC018765.1(120271),HPRT1P2(144965)	COMMD10	./.	+/.	5:30103385	5:116216374	intergenic	intron	inversion	0	0	0	7	7	low	.	.	.	.	.	.	ENSG00000145781	.	.	downstream	downstream	mismatches(1)	.	.	.
MSH3	PLCG2	+/.	+/.	5:80854005	16:81755642	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000197943	.	.	downstream	downstream	mismatches(1)	.	.	.
THADA	AC018765.1(120271),HPRT1P2(144965)	-/.	./.	2:43464624	5:30103385	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000115970	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC018765.1(120271),HPRT1P2(144965)	RP1(43574),AC084834.1(152291)	./.	./.	5:30103385	8:54915294	intergenic	intergenic	translocation	0	0	0	7	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC018765.1(120271),HPRT1P2(144965)	AP005059.1	./.	+/.	5:30103385	18:5568113	intergenic	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	.	ENSG00000264000	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214882	21:8448024	intron	intron	duplication	0	0	0	0	1	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AC018765.1(120271),HPRT1P2(144965)	EPB41L3	./.	-/.	5:30103385	18:5568113	intergenic	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	.	ENSG00000082397	.	.	downstream	downstream	mismatches(1)	.	.	.
VAV3	AC018765.1(120271),HPRT1P2(144965)	-/.	./.	1:107670554	5:30103385	intron	intergenic	translocation	0	0	0	20	7	low	.	.	.	.	.	ENSG00000134215	.	.	.	downstream	downstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	LINC02620	./.	-/.	2:64025816	10:104479815	intergenic	intron	translocation	0	0	0	25	2200	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	upstream	mismatches	.	.	.
MTRR(12525),AC025174.1(5742)	COMMD10	./.	+/.	5:7918550	5:116216376	intergenic	intron	duplication	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000145781	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008083.2(38156),PPIAP45(24437)	ITGAX	./.	+/.	12:47317177	16:31365331	intergenic	intron	translocation	0	0	0	5	4	low	.	.	.	.	.	.	ENSG00000140678	.	.	upstream	downstream	mismatches(1)	.	.	.
CADM2	ITGAX	+/.	+/.	3:85836872	16:31365331	intron	intron	translocation	0	0	0	19	4	low	.	.	.	.	.	ENSG00000175161	ENSG00000140678	.	.	upstream	downstream	mismatches(1)	.	.	.
ITGAX	AP005059.1	+/.	+/.	16:31365331	18:5568113	intron	intron	translocation/5'-5'	0	0	0	4	1	low	.	.	.	.	.	ENSG00000140678	ENSG00000264000	.	.	downstream	downstream	mismatches(1)	.	.	.
ITGAX	EPB41L3	+/.	-/.	16:31365331	18:5568113	intron	intron	translocation	0	0	0	4	1	low	.	.	.	.	.	ENSG00000140678	ENSG00000082397	.	.	downstream	downstream	mismatches(1)	.	.	.
DHFR	MEGF11	-/.	-/.	5:80651216	15:66133969	intron	intron	translocation/3'-3'	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000157890	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22692),NRXN3(87403)	FXNP1(22701),NRXN3(87394)	./.	./.	14:78082970	14:78082979	intergenic	intergenic	duplication/ITD	0	0	0	424	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DNAH14	DNAH14	+/.	+/.	1:225078769	1:225078784	intron	intron	duplication/ITD	0	0	0	47	38	low	.	.	.	.	.	ENSG00000185842	ENSG00000185842	.	.	upstream	downstream	low_entropy(1)	.	.	.
SVIL	SVIL	-/.	-/.	10:29509321	10:29509380	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000197321	ENSG00000197321	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
SCFD2	SCFD2	-/.	-/.	4:53012342	4:53012377	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000184178	ENSG00000184178	.	.	upstream	downstream	low_entropy(1)	.	.	.
Y_RNA(92915),RNA5SP103(1239)	RPLP0P2(5552),AP002754.2(9664)	./.	./.	2:128443842	11:61645001	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48529),TPT1P1(55405)	./.	./.	2:128340558	21:31784936	intergenic	intergenic	translocation	0	0	0	35	220	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
NBEA	5_8S_rRNA(1690),FP236383.3(122020)	+/.	./.	13:35284832	21:8258623	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000172915	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4480),AP001994.1(77201)	+/.	./.	1:225078904	11:119744103	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479906	intron	intron	translocation	0	0	0	144	1761	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479904	intron	intron	translocation	0	0	0	144	1761	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479902	intron	intron	translocation	0	0	0	144	1761	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479896	intron	intron	translocation	0	0	0	144	2216	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
CNTNAP5	MT-RNR1	+/.	+/.	2:124529134	MT:1374	intron	exon	translocation/3'-3'	0	0	0	2	.	low	.	.	.	.	.	ENSG00000155052	ENSG00000211459	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(911),IGHV4-39(2501)	./.	./.	14:106419121	14:106419210	intergenic	intergenic	duplication/ITD	0	0	0	192	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CSMD1	AD000090.1	-/.	+/.	8:3367280	19:35575792	intron	exon	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000183117	ENSG00000283907	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01484	AL355499.1	-/.	+/.	5:173742768	6:8250705	intron	intron	translocation/3'-3'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000253686	ENSG00000232234	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01933(62444),AC008571.2(42105)	VAV2	./.	-/.	5:152332893	9:133895373	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000160293	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092944.1	SYT7	+/.	-/.	3:157252490	11:61538404	intron	intron	translocation/3'-3'	0	0	0	26	4	low	.	.	.	.	.	ENSG00000243176	ENSG00000011347	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	AP003390.1(4475),AP001994.1(77206)	+/.	./.	10:104396370	11:119744098	intron	intergenic	translocation	0	0	0	558	3711	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
SEPTIN8	SYT7	-/.	-/.	5:132788158	11:61538404	intron	intron	translocation	0	0	0	26	4	low	.	.	.	.	.	ENSG00000164402	ENSG00000011347	.	.	upstream	downstream	low_entropy	.	.	.
SEPTIN8	RN7SL97P(34682),AC027229.1(100002)	-/.	./.	5:132788158	18:25853214	intron	intergenic	translocation	0	0	0	26	4	low	.	.	.	.	.	ENSG00000164402	.	.	.	upstream	upstream	low_entropy	.	.	.
SEPTIN8	NLRP1(36435),AC135726.1(44367)	-/.	./.	5:132788158	17:5655859	intron	intergenic	translocation	0	0	0	26	6	low	.	.	.	.	.	ENSG00000164402	.	.	.	upstream	downstream	low_entropy	.	.	.
TLR5	AC092944.1	-/.	+/.	1:223141873	3:157252490	intron	intron	translocation/3'-3'	0	0	0	7	26	low	.	.	.	.	.	ENSG00000187554	ENSG00000243176	.	.	downstream	upstream	low_entropy	.	.	.
TLR5	SEPTIN8	-/.	-/.	1:223141873	5:132788158	intron	intron	translocation	0	0	0	7	26	low	.	.	.	.	.	ENSG00000187554	ENSG00000164402	.	.	downstream	upstream	low_entropy	.	.	.
AC092944.1	AC004852.2(314381),GAPDHP68(110740)	+/.	./.	3:157252490	7:9504238	intron	intergenic	translocation	0	0	0	26	4	low	.	.	.	.	.	ENSG00000243176	.	.	.	upstream	upstream	low_entropy	.	.	.
FP671120.4	5_8S_rRNA(2802),FP236383.3(120908)	+/.	./.	21:8216922	21:8259735	intron	intergenic	inversion	0	0	0	10	4	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092944.1	LINC01392	+/.	-/.	3:157252490	7:115109506	intron	intron	translocation/3'-3'	0	0	0	26	3	low	.	.	.	.	.	ENSG00000243176	ENSG00000233607	.	.	upstream	downstream	low_entropy	.	.	.
AC092944.1	LINC01393	+/.	+/.	3:157252490	7:115109506	intron	intron	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000243176	ENSG00000225535	.	.	upstream	downstream	low_entropy	.	.	.
SPC25	SPC25	-/.	-/.	2:168903615	2:168903627	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000152253	ENSG00000152253	.	.	upstream	downstream	low_entropy(1)	.	.	.
SEPTIN8	LINC01392	-/.	-/.	5:132788158	7:115109506	intron	intron	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000164402	ENSG00000233607	.	.	upstream	downstream	low_entropy	.	.	.
SPC25	G6PC2	-/.	+/.	2:168903615	2:168903627	intron	intron	duplication/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000152253	ENSG00000152254	.	.	upstream	downstream	low_entropy(1)	.	.	.
SEPTIN8	LINC01393	-/.	+/.	5:132788158	7:115109506	intron	intron	translocation/5'-5'	0	0	0	26	3	low	.	.	.	.	.	ENSG00000164402	ENSG00000225535	.	.	upstream	downstream	low_entropy	.	.	.
TRPM8	AC092944.1	+/.	+/.	2:233927909	3:157252490	intron	intron	translocation/3'-3'	0	0	0	2	26	low	.	.	.	.	.	ENSG00000144481	ENSG00000243176	.	.	upstream	upstream	low_entropy	.	.	.
AC092944.1	AC063949.2	+/.	+/.	3:157252490	12:92447496	intron	intron	translocation/3'-3'	0	0	0	26	6	low	.	.	.	.	.	ENSG00000243176	ENSG00000266923	.	.	upstream	upstream	low_entropy	.	.	.
PRRC2C(5189),MYOCOS(1921)	ATR	./.	-/.	1:171598700	3:142462335	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000175054	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092944.1	TRPC5(74),DPRXP7(237102)	+/.	./.	3:157252490	X:112082850	intron	intergenic	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000243176	.	.	.	upstream	downstream	low_entropy	.	.	.
SEPTIN8	PLXNA4	-/.	-/.	5:132788158	7:132189045	intron	intron	translocation	0	0	0	26	468	low	.	.	.	.	.	ENSG00000164402	ENSG00000221866	.	.	upstream	downstream	low_entropy	.	.	.
AC092944.1	AL358053.1(206664),AL591644.1(221017)	+/.	./.	3:157252490	9:1756767	intron	intergenic	translocation	0	0	0	26	8	low	.	.	.	.	.	ENSG00000243176	.	.	.	upstream	upstream	low_entropy	.	.	.
SEPTIN8	AL358053.1(206664),AL591644.1(221017)	-/.	./.	5:132788158	9:1756767	intron	intergenic	translocation	0	0	0	26	8	low	.	.	.	.	.	ENSG00000164402	.	.	.	upstream	upstream	low_entropy	.	.	.
LEMD1-DT(27312),CDK18(8260)	AC092944.1	./.	+/.	1:205496336	3:157252490	intergenic	intron	translocation	0	0	0	9	26	low	.	.	.	.	.	.	ENSG00000243176	.	.	upstream	upstream	low_entropy	.	.	.
LEMD1-DT(27312),CDK18(8260)	SEPTIN8	./.	-/.	1:205496336	5:132788158	intergenic	intron	translocation	0	0	0	9	26	low	.	.	.	.	.	.	ENSG00000164402	.	.	upstream	upstream	low_entropy	.	.	.
AC092944.1	PCAT1	+/.	+/.	3:157252490	8:126750694	intron	intron	translocation	0	0	0	26	18	low	.	.	.	.	.	ENSG00000243176	ENSG00000253438	.	.	upstream	downstream	low_entropy	.	.	.
AC004540.1	DMD	+/.	-/.	7:26469983	X:32054088	intron	intron	translocation/5'-5'	0	0	0	20	19	low	.	.	.	.	.	ENSG00000214870	ENSG00000198947	.	.	downstream	upstream	low_entropy	.	.	.
AC092944.1	BAG4(917),AC084024.4(9739)	+/.	./.	3:157252490	8:38214218	intron	intergenic	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000243176	.	.	.	upstream	upstream	low_entropy	.	.	.
SEPTIN8	XKR3	-/.	-/.	5:132788158	22:16791828	intron	intron	translocation	0	0	0	26	4	low	.	.	.	.	.	ENSG00000164402	ENSG00000172967	.	.	upstream	downstream	low_entropy	.	.	.
ZNF385B	ADAM20P3(114905),AC108073.3(79060)	-/-	./+	2:179861209	4:187863104	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144331	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092944.1	HECW1	+/.	+/.	3:157252490	7:43336129	intron	intron	translocation/3'-3'	0	0	0	26	25	low	.	.	.	.	.	ENSG00000243176	ENSG00000002746	.	.	upstream	upstream	low_entropy	.	.	.
SEPTIN8	HECW1	-/.	+/.	5:132788158	7:43336129	intron	intron	translocation	0	0	0	26	25	low	.	.	.	.	.	ENSG00000164402	ENSG00000002746	.	.	upstream	upstream	low_entropy	.	.	.
SEPTIN8	CLCN5	-/.	+/.	5:132788158	X:50007382	intron	intron	translocation	0	0	0	26	4	low	.	.	.	.	.	ENSG00000164402	ENSG00000171365	.	.	upstream	upstream	low_entropy	.	.	.
AC092944.1	CDK5P1(3508),AC016405.3(6313)	+/.	./.	3:157252490	8:122773658	intron	intergenic	translocation	0	0	0	26	7	low	.	.	.	.	.	ENSG00000243176	.	.	.	upstream	upstream	low_entropy	.	.	.
SEPTIN8	CDK5P1(3508),AC016405.3(6313)	-/.	./.	5:132788158	8:122773658	intron	intergenic	translocation	0	0	0	26	7	low	.	.	.	.	.	ENSG00000164402	.	.	.	upstream	upstream	low_entropy	.	.	.
AC092944.1	AC015687.1	+/.	+/.	3:157252490	8:70990784	intron	intron	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000243176	ENSG00000285579	.	.	upstream	downstream	low_entropy	.	.	.
SEPTIN8	BAG4(917),AC084024.4(9739)	-/.	./.	5:132788158	8:38214218	intron	intergenic	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000164402	.	.	.	upstream	upstream	low_entropy	.	.	.
AC006007.1(191582),AC073308.1(177111)	AC023632.3(701),AC023632.4(3451)	./.	./.	7:145872951	8:94590960	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC090578.1(69757),RPSAP74(286071)	AC023632.3(702),AC023632.4(3450)	./.	./.	8:88957330	8:94590961	intergenic	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PLXNA4	AC006007.1(191582),AC073308.1(177111)	-/.	./.	7:132611069	7:145872951	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000221866	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GRIP2	AC105252.1(292285),AC079380.1(3753)	-/-	./+	3:14493697	4:133867493	CDS	intergenic	translocation	0	0	0	0	11	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000144596	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC20B(50),MCIDAS(46337)	H19(107604),AC132217.2(20038),IGF2(20038)	./.	./.	5:55173227	11:2109074	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC20B(50),MCIDAS(46337)	MIR1-1HG	./.	+/.	5:55173227	20:62555963	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000174407	.	.	upstream	upstream	mismatches(1)	.	.	.
BOLA1	CDC20B(50),MCIDAS(46337)	+/.	./.	1:149899979	5:55173227	5'UTR	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000178096	.	.	.	upstream	upstream	mismatches(1)	.	.	.
H4-16	IGBP1	-/.	+/.	12:14769962	X:70143734	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197837	ENSG00000089289	.	.	downstream	upstream	mismatches(1)	.	.	.
CDC20B(50),MCIDAS(46337)	IGBP1	./.	+/.	5:55173227	X:70143735	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000089289	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC20B(50),MCIDAS(46337)	PCDH11Y	./.	+/.	5:55173227	Y:5000980	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000099715	.	.	upstream	upstream	mismatches(1)	.	.	.
HRAT17(49689),AC073346.2(29758)	H4-16	./.	-/.	7:113045366	12:14769961	intergenic	exon	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000197837	.	.	downstream	downstream	mismatches(1)	.	.	.
H4-16	TBC1D22A	-/.	+/.	12:14769961	22:46933709	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197837	ENSG00000054611	.	.	downstream	upstream	mismatches(1)	.	.	.
CDC20B(50),MCIDAS(46337)	TBC1D22A	./.	+/.	5:55173227	22:46933711	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000054611	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC20B(50),MCIDAS(46337)	PCDH11X	./.	+/.	5:55173227	X:91780059	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000102290	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC35F3	OSBPL6	+/.	+/.	1:234110597	2:178322361	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000183780	ENSG00000079156	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012513.1	AP003390.1(4503),AP001994.1(77178)	+/.	./.	2:216263455	11:119744126	intron	intergenic	translocation	0	0	0	9	3002	low	.	.	.	.	.	ENSG00000231092	.	.	.	upstream	downstream	mismatches	.	.	.
MARCHF4	AP003390.1(4503),AP001994.1(77178)	-/.	./.	2:216263455	11:119744126	intron	intergenic	translocation	0	0	0	9	3002	low	.	.	.	.	.	ENSG00000144583	.	.	.	upstream	downstream	mismatches	.	.	.
AC012513.1	AP003390.1(4504),AP001994.1(77177)	+/.	./.	2:216263455	11:119744127	intron	intergenic	translocation	0	0	0	9	3002	low	.	.	.	.	.	ENSG00000231092	.	.	.	upstream	downstream	mismatches	.	.	.
MARCHF4	AP003390.1(4504),AP001994.1(77177)	-/.	./.	2:216263455	11:119744127	intron	intergenic	translocation	0	0	0	9	3002	low	.	.	.	.	.	ENSG00000144583	.	.	.	upstream	downstream	mismatches	.	.	.
AC012513.1	AP001823.1(3428),ELMOD1(760)	+/.	./.	2:216263455	11:107590331	intron	intergenic	translocation	0	0	0	9	1909	low	.	.	.	.	.	ENSG00000231092	.	.	.	upstream	upstream	mismatches	.	.	.
MARCHF4	AP001823.1(3428),ELMOD1(760)	-/.	./.	2:216263455	11:107590331	intron	intergenic	translocation	0	0	0	9	1909	low	.	.	.	.	.	ENSG00000144583	.	.	.	upstream	upstream	mismatches	.	.	.
LINC01392	LINC01393	-/.	+/.	7:115109456	7:115109469	intron	intron	duplication/5'-5'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000233607	ENSG00000225535	.	.	upstream	downstream	low_entropy(1)	.	.	.
MARCHF4	MIR4300HG	-/.	-/.	2:216263455	11:82143174	intron	intron	translocation	0	0	0	9	1095	low	.	.	.	.	.	ENSG00000144583	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
AC012513.1	MIR4300HG	+/.	-/.	2:216263455	11:82143175	intron	intron	translocation/3'-3'	0	0	0	9	1095	low	.	.	.	.	.	ENSG00000231092	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
CASZ1	AL512603.2	-/.	+/.	1:10793941	10:23494570	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000130940	ENSG00000287124	.	.	upstream	downstream	mismatches(1)	.	.	.
CASZ1	HLA-DPB2(1598),HLA-DPA3(534)	-/.	./.	1:10793941	6:33130682	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000130940	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NAV1	NAV1	+/.	+/.	1:201702673	1:201702688	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000134369	ENSG00000134369	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262466	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
FH(8961),KMO(3418)	FH(9023),KMO(3356)	./.	./.	1:241528716	1:241528778	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
RPS2P18(22130),AC092573.1(17577)	RPS2P18(22143),AC092573.1(17564)	./.	./.	2:173320642	2:173320655	intergenic	intergenic	duplication/ITD	0	0	0	4	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RABGAP1L	RABGAP1L	+/.	+/.	1:174866103	1:174866164	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000152061	ENSG00000152061	.	.	upstream	downstream	low_entropy(1)	.	.	.
PLEKHG1	PLEKHG1	+/.	+/.	6:150674633	6:150674644	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000120278	ENSG00000120278	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3431),ELMOD1(757)	AP001823.1(3519),ELMOD1(669)	./.	./.	11:107590334	11:107590422	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SPOCK1	ZNF284	-/.	+/.	5:137408729	19:44084174	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000152377	ENSG00000186026	.	.	upstream	upstream	mismatches(1)	.	.	.
SPOCK1	AC067968.1	-/.	+/.	5:137408729	19:44084174	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000152377	ENSG00000267022	.	.	upstream	upstream	mismatches(1)	.	.	.
SPOCK1	CCDC26	-/.	-/.	5:137408729	8:129168605	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000152377	ENSG00000229140	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01360(228773),LINC02238(51190)	NDST4	./.	-/.	1:73584026	4:114961949	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000138653	.	.	downstream	downstream	mismatches(1)	.	.	.
GAPDHP36(89378),RALBP1P1(20621)	LINC01068(56234),AL136442.1(9754)	./.	./.	3:180302486	13:79627679	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC097717.1	LINC01068(56234),AL136442.1(9754)	-/.	./.	2:199909202	13:79627679	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000232732	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02612	AC069288.1	+/.	-/.	2:150617554	7:1917759	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000286192	.	.	downstream	downstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	14:99796189	14:99796202	intron	intron	duplication/ITD	0	0	0	348	348	low	.	.	.	.	.	ENSG00000066629	ENSG00000066629	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
EML1	EML1	+/.	+/.	14:99796190	14:99796201	intron	intron	duplication/ITD	0	0	0	348	348	low	.	.	.	.	.	ENSG00000066629	ENSG00000066629	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL031282.2	MRPS6	-/.	+/.	1:1709359	21:34109348	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000268575	ENSG00000243927	.	.	upstream	upstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	12:105046145	12:105046192	intron	intron	duplication/5'-5'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000151131	.	.	upstream	downstream	duplicates(1)	.	.	.
CDK11A	MRPS6	-/.	+/.	1:1709359	21:34109348	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000008128	ENSG00000243927	.	.	upstream	upstream	mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	12:105046145	12:105046192	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000151131	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ALDH1L2	C12orf45	-/.	+/.	12:105046145	12:105046191	intron	intron	duplication/5'-5'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000151131	.	.	upstream	downstream	duplicates(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	12:105046145	12:105046191	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000151131	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
BMPR1B	BMPR1B	+/.	+/.	4:94902252	4:94902263	intron	intron	duplication/ITD	0	0	0	345	345	low	.	.	.	.	.	ENSG00000138696	ENSG00000138696	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
BMPR1B	BMPR1B	+/.	+/.	4:94902253	4:94902264	intron	intron	duplication/ITD	0	0	0	345	345	low	.	.	.	.	.	ENSG00000138696	ENSG00000138696	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
COL11A1(227571),AC095032.2(78436)	SLC8A1-AS1	./.	+/.	1:103336443	2:40045032	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000227028	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MEIS1	FP236383.3	+/.	+/.	2:66555255	21:8438935	intron	intron	translocation/3'-3'	0	0	0	4	159	low	.	.	.	.	.	ENSG00000143995	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC062004.1(382181),AC084706.1(228630)	AC062004.1(382232),AC084706.1(228579)	./.	./.	8:77919471	8:77919522	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MEIS1	FP671120.7(379),5_8S_rRNA(888)	+/.	./.	2:66555255	21:8255893	intron	intergenic	translocation	0	0	0	4	143	low	.	.	.	.	.	ENSG00000143995	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MEIS1	FP671120.4	+/.	+/.	2:66555255	21:8211687	intron	intron	translocation/3'-3'	0	0	0	4	136	low	.	.	.	.	.	ENSG00000143995	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MEIS1	FP236383.3	+/.	+/.	2:66555255	21:8394722	intron	intron	translocation/3'-3'	0	0	0	4	154	low	.	.	.	.	.	ENSG00000143995	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02235	ERCC1	+/.	-/.	8:81842480	19:45460842	intron	intron	translocation/3'-3'	0	0	0	76	0	low	.	.	.	.	.	ENSG00000254689	ENSG00000012061	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFB9P3(84563),LINC01608(5539)	NRP1	./.	-/.	8:110894457	10:33334709	intergenic	5'UTR	translocation	0	0	0	30	21	low	.	.	.	.	.	.	ENSG00000099250	.	.	upstream	downstream	mismatches(1)	.	.	.
NRP1	AP002371.1(8127),AP003072.4(53697)	-/.	./.	10:33334709	11:93080158	5'UTR	intergenic	translocation	0	0	0	21	30	low	.	.	.	.	.	ENSG00000099250	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK14	NRP1	+/.	-/.	7:90766754	10:33334709	intron	5'UTR	translocation/3'-3'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000058091	ENSG00000099250	.	.	upstream	downstream	mismatches(1)	.	.	.
SUSD5(52300),FBXL2(5915)	NRP1	./.	-/.	3:33271110	10:33334709	intergenic	5'UTR	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000099250	.	.	upstream	downstream	mismatches(1)	.	.	.
RYR2	UBOX5-AS1	+/.	+/.	1:237603041	20:3129761	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000198626	ENSG00000235958	.	.	upstream	downstream	mismatches(1)	.	.	.
AC020741.1	NRP1	-/-	-/-	4:61428174	10:33334709	exon	5'UTR	translocation	0	0	0	0	21	low	.	.	|C-terminal_domain_of_neuropilin_glycoprotein(100%),CUB_domain(100%),F5/8_type_C_domain(100%),MAM_domain__meprin/A5/mu(100%)	.	.	ENSG00000205682	ENSG00000099250	.	.	upstream	downstream	mismatches(1)	.	.	.
NRP1	AL513321.1(21925),AL592466.1(602)	-/.	./.	10:33334709	10:65270717	5'UTR	intergenic	deletion	0	0	0	21	30	low	.	.	.	.	.	ENSG00000099250	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	MT-RNR2	-/.	+/.	3:96617731	MT:2450	5'UTR	exon	translocation/3'-3'	0	0	0	8	.	low	.	.	.	.	.	ENSG00000269028	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NRP1	AC008014.1(15861),AC079906.1(77859)	-/.	./.	10:33334709	12:46892645	5'UTR	intergenic	translocation	0	0	0	21	7	low	.	.	.	.	.	ENSG00000099250	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NRP1	AC084759.3(20),AC084759.2(31977)	-/.	./.	10:33334709	15:53914732	5'UTR	intergenic	translocation	0	0	0	21	7	low	.	.	.	.	.	ENSG00000099250	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC084759.3	NRP1	+/+	-/-	15:53910829	10:33334709	exon	5'UTR	translocation	0	0	0	7	21	low	.	.	|C-terminal_domain_of_neuropilin_glycoprotein(100%),CUB_domain(100%),F5/8_type_C_domain(100%),MAM_domain__meprin/A5/mu(100%)	.	.	ENSG00000280362	ENSG00000099250	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01592	NRP1	-/.	-/.	8:68940496	10:33334709	intron	5'UTR	translocation	0	0	0	30	21	low	.	.	.	.	.	ENSG00000253658	ENSG00000099250	.	.	upstream	downstream	mismatches(1)	.	.	.
NRP1	FIBIN(9775),BBOX1(33863)	-/.	./.	10:33334709	11:27006862	5'UTR	intergenic	translocation	0	0	0	21	7	low	.	.	.	.	.	ENSG00000099250	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NRIP3	TRAPPC9	-/-	-/-	11:9003964	8:140089241	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000167632	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.22	TRAPPC9	-/.	-/.	7:117610	8:140089241	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000167632	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093875.1(209856),LINC02511(32324)	LMNTD1(18417),RN7SKP262(112291)	./.	./.	4:136763595	12:25666996	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093875.1(209856),LINC02511(32324)	C16orf82(51815),EEF1A1P38(12503)	./.	./.	4:136763595	16:27120980	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093875.1(209856),LINC02511(32324)	AC015522.1	./.	+/.	4:136763595	8:83977022	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000254202	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093875.1(209856),LINC02511(32324)	NDRG1(9254),KC877373.1(14721)	./.	./.	4:136763595	8:133311276	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC002463.1	AP000229.1(18518),AP001595.2(81491)	+/.	./.	7:112751479	21:26235899	intron	intergenic	translocation	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HECW1	HECW1	+/.	+/.	7:43336121	7:43336204	intron	intron	duplication/ITD	0	0	0	25	20	low	.	.	.	.	.	ENSG00000002746	ENSG00000002746	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC002463.1	AC015522.1	+/.	+/.	7:112751479	8:83977022	intron	intron	translocation/3'-3'	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	ENSG00000254202	.	.	upstream	upstream	mismatches(1)	.	.	.
AC002463.1	NDRG1(9254),KC877373.1(14721)	+/.	./.	7:112751479	8:133311276	intron	intergenic	translocation	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC002463.1	ITGBL1	+/.	+/.	7:112751479	13:101670179	intron	intron	translocation	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	ENSG00000198542	.	.	upstream	downstream	mismatches(1)	.	.	.
TACR1	NUDT12(105223),AC008505.1(212116)	-/.	./.	2:75053981	5:103668013	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000115353	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NUDT12(105221),AC008505.1(212118)	SPECC1L-ADORA2A	./.	+/.	5:103668011	22:24345871	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000258555	.	.	downstream	upstream	mismatches(1)	.	.	.
NUDT12(105221),AC008505.1(212118)	SPECC1L	./.	+/.	5:103668011	22:24345871	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000100014	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004946.1(17650),KCND2(28312)	SPECC1L	./.	+/.	7:120244863	22:24345871	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000100014	.	.	downstream	upstream	mismatches(1)	.	.	.
EFCAB14(21846),AL593856.1(1337)	ZSWIM2(124730),IMPDH1P7(27938)	./.	./.	1:46740992	2:186973938	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
EFCAB14(21847),AL593856.1(1336)	AC022335.1	./.	+/.	1:46740993	12:21146484	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000257062	.	.	upstream	downstream	mismatches(1)	.	.	.
EFCAB14(21846),AL593856.1(1337)	AC104248.1	./.	-/.	1:46740992	8:108911900	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000253796	.	.	upstream	downstream	mismatches(1)	.	.	.
AC142384.1	AC142384.1	+/.	+/.	16:33589394	16:33589405	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000259882	ENSG00000259882	.	.	upstream	downstream	low_entropy(1)	.	.	.
PIGQ	AC009159.1(6574),AC009159.4(49001)	+/.	./.	16:578376	16:79626684	exon	intergenic	duplication	0	0	0	2	0	low	.	.	.	.	.	ENSG00000007541	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ALKAL2	SP100	-/.	+/.	2:288469	2:230450040	intron	intron	inversion	0	0	0	1	0	low	.	.	.	.	.	ENSG00000189292	ENSG00000067066	.	.	downstream	downstream	mismatches(1)	.	.	.
VN1R28P(219),SAPCD2P2(559)	BANF2	./.	+/.	7:57423944	20:17733357	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000125888	.	.	downstream	upstream	mismatches(1)	.	.	.
CICP18(12890),AL035696.2(9634)	VN1R28P(219),SAPCD2P2(559)	./.	./.	6:157973	7:57423944	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KANSL3	DSCAS	-/.	+/.	2:96640965	18:31114660	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000114982	ENSG00000265888	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PGBD2(4338),RPL23AP25(12297)	VN1R28P(219),SAPCD2P2(559)	./.	./.	1:248924284	7:57423944	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02235	AP003390.1(4502),AP001994.1(77179)	+/.	./.	8:81842440	11:119744125	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
SNX16	AP003390.1(4502),AP001994.1(77179)	-/.	./.	8:81842440	11:119744125	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
SNX16	AP003390.1(4498),AP001994.1(77183)	-/.	./.	8:81842440	11:119744121	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
LINC02235	AP003390.1(4496),AP001994.1(77185)	+/.	./.	8:81842440	11:119744119	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
LINC02235	AP003390.1(4494),AP001994.1(77187)	+/.	./.	8:81842440	11:119744117	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479900	intron	intron	translocation	0	0	0	144	2216	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
SNX16	AP003390.1(4494),AP001994.1(77187)	-/.	./.	8:81842440	11:119744117	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
FAT1(23081),AC108865.1(141166)	RTEL1-TNFRSF6B	./.	+/.	4:186749803	20:63683592	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000026036	.	.	upstream	downstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	RTEL1	./.	+/.	4:186749803	20:63683592	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258366	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.22	RTEL1	-/.	+/.	7:117610	20:63683594	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000258366	.	.	upstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749063	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749054	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749054	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749057	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749060	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL24P9(382019),AC074035.1(291620)	RPL24P9(382068),AC074035.1(291571)	./.	./.	X:4335580	X:4335629	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
HDX(220916),SETP4(31741)	HDX(220965),SETP4(31692)	./.	./.	X:84723395	X:84723444	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SYNPO2	SYNPO2	+/.	+/.	4:118900658	4:118900704	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000172403	ENSG00000172403	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MAP4K4	CFAP58	+/.	+/.	2:101785683	10:104396370	intron	intron	translocation/3'-3'	0	0	0	496	558	low	.	.	.	.	.	ENSG00000071054	ENSG00000120051	.	.	upstream	upstream	low_entropy	.	.	.
C1QTNF3-AMACR	C1QTNF3-AMACR	-/.	-/.	5:34056480	5:34056493	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000273294	ENSG00000273294	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC069288.1	PFKL	-/.	+/.	7:1943953	21:44310567	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000286192	ENSG00000141959	.	.	downstream	downstream	mismatches(1)	.	.	.
MAD1L1	PFKL	-/.	+/.	7:1943953	21:44310567	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000002822	ENSG00000141959	.	.	downstream	downstream	mismatches(1)	.	.	.
MAFK	PFKL	+/.	+/.	7:1943953	21:44310567	intergenic	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000198517	ENSG00000141959	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8400582	MT:2223	intron	exon	translocation/3'-3'	0	0	0	7	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8217544	MT:2223	intron	exon	translocation/3'-3'	0	0	0	25	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01205	AC004946.1(2692),KCND2(43270)	+/.	./.	3:109700824	7:120229905	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC093297.2(51186),AC114954.1(155421)	AC021749.1(119403),AC021820.1(89919)	./.	./.	5:44879778	11:39993791	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
AC093297.2(51186),AC114954.1(155421)	AP001025.1	./.	+/.	5:44879778	18:3319727	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000266578	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.8(3249),MIR6724-2(5209)	FP236383.3	./.	+/.	21:8244296	21:8441653	intergenic	intron	deletion/read-through	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(2)	.	.	.
FP671120.8(3249),MIR6724-2(5209)	FP236383.3	./.	+/.	21:8244296	21:8397433	intergenic	intron	deletion/read-through	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(2)	.	.	.
RUFY4(18121),CXCR2(16587)	CMTM8	./.	+/.	2:218108702	3:32347435	intergenic	intron	translocation	0	0	0	193	1	low	.	.	.	.	.	.	ENSG00000170293	.	.	downstream	upstream	homopolymer(1)	.	.	.
RUFY4(18121),CXCR2(16587)	L3MBTL4	./.	-/.	2:218108702	18:5979007	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000154655	.	.	downstream	upstream	homopolymer(1)	.	.	.
RUFY4(18121),CXCR2(16587)	AP001021.3	./.	+/.	2:218108702	18:5979007	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000266846	.	.	downstream	upstream	homopolymer(1)	.	.	.
RUFY4(18121),CXCR2(16587)	AP001021.1	./.	+/.	2:218108702	18:5979007	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000264449	.	.	downstream	upstream	homopolymer(1)	.	.	.
RUFY4(18122),CXCR2(16586)	PPARG	./.	+/.	2:218108703	3:12324396	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000132170	.	.	downstream	downstream	homopolymer(1)	.	.	.
RUFY4(18121),CXCR2(16587)	IQSEC1	./.	-/.	2:218108702	3:13277284	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000144711	.	.	downstream	upstream	homopolymer(1)	.	.	.
MIR4300HG	IGHVIII-38-1(831),IGHV4-39(2581)	-/.	./.	11:82143176	14:106419130	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
MIR4300HG	IGHVIII-38-1(831),IGHV4-39(2581)	-/.	./.	11:82143174	14:106419130	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4506),AP001994.1(77175)	IGHVIII-38-1(831),IGHV4-39(2581)	./.	./.	11:119744129	14:106419130	intergenic	intergenic	translocation	0	0	0	3002	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP001823.1(3429),ELMOD1(759)	IGHVIII-38-1(831),IGHV4-39(2581)	./.	./.	11:107590332	14:106419130	intergenic	intergenic	translocation	0	0	0	1909	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
FOXI3	PTPRD	-/.	-/.	2:88452451	9:10556368	CDS	intron	translocation	0	0	0	2	12	low	.	.	.	.	.	ENSG00000214336	ENSG00000153707	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MED6P1(8575),AL353149.1(200731)	MED6P1(8588),AL353149.1(200718)	./.	./.	10:88058398	10:88058411	intergenic	intergenic	duplication/ITD	0	0	0	13	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KIAA0895	C13orf42	-/.	-/.	7:36389665	13:51148087	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164542	ENSG00000226792	.	.	upstream	downstream	mismatches(1)	.	.	.
SERPINB7(22491),SERPINB2(43825)	FP671120.4	./.	+/.	18:63827867	21:8214783	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
KIAA2012	FP236383.3	+/.	+/.	2:202083780	21:8437078	intron	intron	translocation	0	0	0	0	55	low	.	.	.	.	.	ENSG00000182329	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
SERPINB7(22491),SERPINB2(43825)	5_8S_rRNA(2079),FP236383.3(121631)	./.	./.	18:63827867	21:8259012	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SERPINB7(22491),SERPINB2(43825)	FP236383.3	./.	+/.	18:63827867	21:8442047	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC092266.1(201068),LSINCT5(249500)	FP671120.4	./.	+/.	5:2463091	21:8214782	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
ZNF638	FP671120.4	+/.	+/.	2:71338676	21:8214782	intron	intron	translocation/3'-3'	0	0	0	2	5263	low	.	.	.	.	.	ENSG00000075292	ENSG00000278996	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC243967.1	FP671120.4	+/.	+/.	19:41717927	21:8214782	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000267881	ENSG00000278996	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC005695.1	LINC01736(2678),GALNT2(48117)	-/-	./+	17:9177399	1:230009873	exon	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000262966	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP3K11	KCNK15	-/-	+/-	11:65611795	20:44746270	exon	intron	translocation/5'-5'	0	0	0	1	4	low	.	.	Protein_kinase_domain(50%),Variant_SH3_domain(100%)|	.	.	ENSG00000173327	ENSG00000124249	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	ZC3H13	+/.	-/.	11:47233103	13:46052477	intron	5'UTR	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000123200	.	.	downstream	downstream	duplicates(1)	.	.	.
DDB2	LINC01971(8010),ACTG1(20391)	+/.	./.	11:47233103	17:81489580	intron	intergenic	translocation	0	0	0	341	1	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(1)	.	.	.
LIN52(32921),VSX2(5293)	FP671120.4	./.	+/.	14:74234156	21:8214782	intergenic	intron	translocation	0	0	0	36	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
LIN52(32921),VSX2(5293)	FP236383.3	./.	+/.	14:74234156	21:8442046	intergenic	intron	translocation	0	0	0	36	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
HNRNPA1P65(4600),SOD3(12892)	ZNF586	./.	+/.	4:24777020	19:57778363	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000083828	.	.	downstream	upstream	mismatches(1)	.	.	.
FRS3	ZNF586	-/.	+/.	6:41772933	19:57778363	CDS	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000137218	ENSG00000083828	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF771	IGF2BP1	+/.	+/.	16:30430021	17:49031071	3'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000179965	ENSG00000159217	.	.	upstream	upstream	mismatches(1)	.	.	.
PAXBP1(57),C21orf62-AS1(251)	PAXBP1(68),C21orf62-AS1(240)	./.	./.	21:32771849	21:32771860	intergenic	intergenic	duplication/ITD	0	0	0	445	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GALNT2	CPNE7	+/.	+/.	1:230187482	16:89588077	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000178773	.	.	upstream	downstream	mismatches(1)	.	.	.
GALNT2	CPNE7	+/.	+/.	1:230187482	16:89587959	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000178773	.	.	upstream	downstream	mismatches(1)	.	.	.
FAT1(23083),AC108865.1(141164)	ANKRD11	./.	-/.	4:186749805	16:89369933	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000167522	.	.	upstream	upstream	mismatches(1)	.	.	.
C16orf95	LINC02834(532),AL159996.1(42458)	-/-	./+	16:87317152	9:86708839	CDS	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	ANKRD11	-/-	-/+	11:9003964	16:89369933	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000167522	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	ANKRD11	-/.	-/.	7:117610	16:89369933	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000167522	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021218.1(49386),Y_RNA(170393)	CPNE7	./.	+/.	7:156015729	16:89588077	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000178773	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02834(532),AL159996.1(42458)	DIP2A(27616),S100B(973)	./.	./.	9:86708839	21:46597631	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	AC104109.4	-/-	-/+	11:9003964	5:134225645	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000273345	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	PPP2CA	-/-	-/+	11:9003964	5:134225645	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000113575	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	AC104109.3	-/-	-/+	11:9003964	5:134225645	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000272772	.	.	upstream	upstream	mismatches(1)	.	.	.
NRP1	AC022748.2	-/.	+/.	10:33334709	15:78672957	5'UTR	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000099250	ENSG00000261303	.	.	downstream	downstream	mismatches(1)	.	.	.
NRIP3	GSE1	-/-	+/-	11:9003964	16:85176724	5'UTR	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000175352	ENSG00000131149	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104109.4	AC093627.22	-/.	-/.	5:134225645	7:117610	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273345	ENSG00000287883	.	.	upstream	upstream	mismatches(1)	.	.	.
PPP2CA	AC093627.22	-/.	-/.	5:134225645	7:117610	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113575	ENSG00000287883	.	.	upstream	upstream	mismatches(1)	.	.	.
ADAP1	WDR20	-/-	+/+	7:954489	14:102148010	5'UTR	intron	translocation	0	0	0	1	0	low	.	.	Putative_GTPase_activating_protein_for_Arf(1%)|WD_domain__G-beta_repeat(100%)	.	.	ENSG00000105963	ENSG00000140153	.	.	upstream	upstream	mismatches(1)	.	.	.
TPD52L3(65672),UHRF2(15579)	IQCH-AS1	./.	-/.	9:6397572	15:67310424	intergenic	intron	translocation	0	0	0	3	40	low	.	.	.	.	.	.	ENSG00000259673	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
MED6P1(110698),AL353149.1(98608)	OR5D3P(24082),OR5D17P(1274)	./.	./.	10:88160521	11:55753703	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TPD52L3(65672),UHRF2(15579)	IQCH	./.	+/.	9:6397572	15:67310424	intergenic	intron	translocation	0	0	0	3	40	low	.	.	.	.	.	.	ENSG00000103599	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC069288.1	ZBTB46	-/.	-/.	7:1868726	20:63774234	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286192	ENSG00000130584	.	.	upstream	upstream	mismatches(1)	.	.	.
AC074024.1	ZBTB46	-/.	-/.	7:79353217	20:63774234	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000286855	ENSG00000130584	.	.	upstream	upstream	mismatches(1)	.	.	.
MAD1L1	MYO18B(24537),LINC02559(106252)	-/.	./.	7:1868724	22:26055582	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000002822	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC074024.1	MYO18B(24538),LINC02559(106251)	-/.	./.	7:79353216	22:26055583	intron	intergenic	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000286855	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MAGI2	MYO18B(24538),LINC02559(106251)	-/.	./.	7:79353216	22:26055583	intron	intergenic	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000187391	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02579	MYO18B(24538),LINC02559(106251)	+/.	./.	2:64609685	22:26055583	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000233694	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TIAM1	MYO18B(24538),LINC02559(106251)	-/.	./.	21:31252028	22:26055583	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000156299	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TEX264	AFAP1	+/.	-/.	3:51674815	4:7841604	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164081	ENSG00000196526	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00882	AP000445.2(7148),TMA16P1(28036)	-/.	./.	3:106776387	11:58768201	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242759	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL353753.1(205306),AL442639.1(318983)	AP000445.2(7148),TMA16P1(28036)	./.	./.	9:26323714	11:58768201	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079193.1(4367),ZDHHC2(1227)	SLC28A1	./.	+/.	8:17155255	15:84908598	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000156222	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.3(3890),FP671120.7(553)	FP236383.3	./.	+/.	21:8254039	21:8397829	intergenic	intron	inversion	0	0	0	57	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MRC2	SLC28A1	+/+	+/-	17:62689983	15:84908599	CDS	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	ENSG00000156222	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IMPDH1P8(85468),AC090946.1(4964)	AC012060.1(92676),LINC02248(36443)	./.	./.	3:15965039	15:26358594	intergenic	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MRC2	AC096719.1(2320),ADGRA3(12421)	+/+	./+	17:62689981	4:22332650	CDS	intergenic	translocation	0	0	0	9	0	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01331(79559),ENC1(10871)	LINC00323	./.	-/.	5:74616535	21:41145526	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000226496	.	.	upstream	upstream	mismatches(1)	.	.	.
AC096719.1(2320),ADGRA3(12421)	SLC2A6(8613),MYMK(26846)	./.	./.	4:22332650	9:133487740	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC096719.1(2320),ADGRA3(12421)	SBNO2	./.	-/.	4:22332650	19:1108540	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000064932	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC28A1	TGM3(7996),TGM6(31826)	+/.	./.	15:84908598	20:2349075	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000156222	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC105252.1(292284),AC079380.1(3754)	SLC28A1	./.	+/.	4:133867492	15:84908598	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000156222	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
COL11A2	GLRX3(7110),LINC02646(21857)	-/-	./-	6:33165750	10:130191631	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Collagen_triple_helix_repeat_(20_copies)(100%),Laminin_G_domain(100%)|	.	.	ENSG00000204248	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC079804.2(2199),ALG1L5P(20982)	YRDCP3(25871),AL773573.1(116900)	./.	./.	7:6902822	21:40890344	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ARHGAP10	AL353660.1	+/.	+/.	4:147780831	13:74289296	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000071205	ENSG00000286330	.	.	downstream	upstream	mismatches(1)	.	.	.
MAGI3	MYBL2	+/.	+/.	1:113675072	20:43683475	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000081026	ENSG00000101057	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012676.1	HBB	-/-	-/-	16:4337545	11:5225536	exon	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	ENSG00000262712	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4371),AP001994.1(77310)	AP003390.1(4379),AP001994.1(77302)	./.	./.	11:119743994	11:119744002	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLCO5A1	CSMD3	-/.	-/.	8:69690367	8:113235338	intron	intron	deletion	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000164796	.	.	downstream	upstream	mismatches(1)	.	.	.
AC021785.1(242231),LINC01603(4429)	SLCO5A1	./.	-/.	8:69420420	8:69690371	intergenic	intron	duplication	0	0	0	0	53	low	.	.	.	.	.	.	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
CSMD3	FP236383.3	-/.	+/.	8:113235338	21:8400586	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000164796	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021785.1(242231),LINC01603(4429)	FP236383.3	./.	+/.	8:69420420	21:8400582	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021785.1(242231),LINC01603(4429)	FP671120.4	./.	+/.	8:69420420	21:8217544	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025183.2(16914),IRX4(609)	FP671120.4	./.	+/.	5:1876804	21:8214792	intergenic	intron	translocation	0	0	0	8	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NSD1	NSD1	+/+	+/+	5:177133064	5:177133041	exon	exon	duplication/ITD	0	0	0	1	0	low	.	.	|AWS_domain(100%),NSD_Cys-His_rich_domain(100%),PWWP_domain(100%),SET_domain(100%)	.	.	ENSG00000165671	ENSG00000165671	.	.	downstream	upstream	low_entropy(1)	.	.	.
PPP1R9B(275),AC015909.2(7381)	FP671120.4	./.	+/.	17:50150952	21:8214792	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ETNK2	FP236383.3	-/-	+/+	1:204151713	21:8397826	CDS	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000143845	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MFHAS1	FP236383.3	-/-	+/+	8:8893384	21:8397826	5'UTR	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000147324	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01381(6973),DNMT3A(11680)	FP236383.3	./.	+/.	2:25216175	21:8397826	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ETNK2	5_8S_rRNA(2088),FP236383.3(121622)	-/-	./+	1:204151713	21:8259021	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000143845	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01381(6973),DNMT3A(11680)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	2:25216175	21:8259021	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2088),FP236383.3(121622)	BRD1(231),Z98885.2(4706)	./.	./.	21:8259021	22:49827743	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC025183.2(16914),IRX4(609)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	5:1876804	21:8259021	intergenic	intergenic	translocation	0	0	0	8	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	BRD1(231),Z98885.2(4706)	+/.	./.	21:8442056	22:49827743	intron	intergenic	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC025183.2(16914),IRX4(609)	FP236383.3	./.	+/.	5:1876804	21:8442056	intergenic	intron	translocation	0	0	0	8	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP15	AC108452.1(6360),AC100781.1(656436)	+/.	./.	2:143162904	18:37998773	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075884	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PPP1R9B(275),AC015909.2(7381)	FP236383.3	./.	+/.	17:50150952	21:8442056	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MFHAS1	FP671120.4	-/-	+/+	8:8893384	21:8214792	5'UTR	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000147324	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PPP1R9B(275),AC015909.2(7381)	FP236383.3	./.	+/.	17:50150952	21:8397826	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TFAMP1(2067),AC074389.2(3262)	JAZF1	./.	-/.	7:1617392	7:27996341	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000153814	.	.	upstream	upstream	mismatches(1)	.	.	.
CYP51A1-AS1	CXCL12(24031),RPL9P21(4125)	+/.	./.	7:92135185	10:44410524	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188693	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC000120.3	CXCL12(24031),RPL9P21(4125)	-/.	./.	7:92135185	10:44410524	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285953	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC000120.2	CXCL12(24031),RPL9P21(4125)	-/.	./.	7:92135185	10:44410524	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285772	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FNDC3A	RNF212B	+/.	+/.	13:49108263	14:23198768	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000102531	ENSG00000215277	.	.	upstream	downstream	mismatches(1)	.	.	.
E4F1	IGHV1OR21-1(51552),AP001464.1(2298289)	+/+	./+	16:2234343	21:10701387	CDS	intergenic	translocation	0	0	0	4	0	low	.	.	C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(79%)|	.	.	ENSG00000167967	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAF2	NPC1	+/+	-/-	5:176506922	18:23527352	CDS	intron	translocation	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|	.	.	ENSG00000113194	ENSG00000141458	.	.	downstream	downstream	mismatches(1)	.	.	.
FAF2	RMC1	+/+	+/-	5:176506922	18:23527352	CDS	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|	.	.	ENSG00000113194	ENSG00000141452	.	.	downstream	downstream	mismatches(1)	.	.	.
NPC1	CABIN1	-/.	+/.	18:23527352	22:24067426	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141458	ENSG00000099991	.	.	downstream	upstream	mismatches(1)	.	.	.
RMC1	CABIN1	+/.	+/.	18:23527352	22:24067426	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141452	ENSG00000099991	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001823.1(3434),ELMOD1(754)	GPC3	./.	-/.	11:107590337	X:133661640	intergenic	intron	translocation	0	0	0	1909	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
CABIN1	KLC1	+/-	+/+	22:24067426	14:103561968	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	|Tetratricopeptide_repeat(100%)	.	.	ENSG00000099991	ENSG00000126214	.	.	upstream	upstream	mismatches(1)	.	.	.
FAF2	AC000120.2	+/+	-/-	5:176506922	7:92135196	CDS	intron	translocation	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|	.	.	ENSG00000113194	ENSG00000285772	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	FP236383.3	-/.	+/.	10:104479911	21:8414016	intron	intron	translocation/3'-3'	0	0	0	1761	63	low	.	.	.	.	.	ENSG00000225768	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
CYP51A1-AS1	CABIN1	+/.	+/.	7:92135196	22:24067426	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188693	ENSG00000099991	.	.	downstream	upstream	mismatches(1)	.	.	.
AC000120.3	CABIN1	-/.	+/.	7:92135196	22:24067426	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285953	ENSG00000099991	.	.	downstream	upstream	mismatches(1)	.	.	.
FAF2	TTTY22	+/+	+/-	5:176506922	Y:9826419	CDS	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|	.	.	ENSG00000113194	ENSG00000224075	.	.	downstream	downstream	mismatches(1)	.	.	.
CABIN1	TTTY22	+/.	+/.	22:24067426	Y:9826419	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000099991	ENSG00000224075	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC1A1	MPPED2	+/.	-/.	9:4499412	11:30465108	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106688	ENSG00000066382	.	.	upstream	downstream	mismatches(1)	.	.	.
PARD3	RNF212B	-/.	+/.	10:34814715	14:23198768	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000148498	ENSG00000215277	.	.	downstream	downstream	mismatches(1)	.	.	.
E4F1	MPPED2	+/+	-/-	16:2234343	11:30465108	CDS	intron	translocation	0	0	0	4	0	low	.	.	C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(79%)|Calcineurin-like_phosphoesterase(38%)	.	.	ENSG00000167967	ENSG00000066382	.	.	downstream	downstream	mismatches(1)	.	.	.
JAZF1	LINC02727(4625),PHBP17(20209)	-/.	./.	7:27996342	11:123319965	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153814	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNF212B	DHX35(52137),LINC01734(121917)	+/.	./.	14:23198768	20:39091860	intron	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000215277	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RNF212B	AC003666.1(28881),MID1(51106)	+/.	./.	14:23198768	X:10394204	intron	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000215277	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GRIN3A(29),MTND3P4(54778)	RNF212B	./.	+/.	9:101738676	14:23198768	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000215277	.	.	upstream	downstream	mismatches(1)	.	.	.
DPYD-AS1	RNF212B	+/.	+/.	1:97099094	14:23198768	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000232878	ENSG00000215277	.	.	upstream	downstream	mismatches(1)	.	.	.
AC021087.4(356),CCDC127(171)	FP671120.4	./.	+/.	5:196697	21:8214776	intergenic	intron	translocation	0	0	0	12	6035	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
AL109914.1(16087),RNU6-793P(30758)	RNF212B	./.	+/.	6:14615777	14:23198768	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000215277	.	.	upstream	downstream	mismatches(1)	.	.	.
ADGRL3	RNF212B	+/.	+/.	4:61882566	14:23198768	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000150471	ENSG00000215277	.	.	upstream	downstream	mismatches(1)	.	.	.
E4F1	RNF212B	+/+	+/-	16:2234341	14:23198768	CDS	intron	translocation/5'-5'	0	0	0	4	12	low	.	.	C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(79%)|	.	.	ENSG00000167967	ENSG00000215277	.	.	downstream	downstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	LINC00602(66380),GAPDHP72(2510)	./.	./.	4:186749803	6:166055995	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01731	CFAP58	-/.	+/.	1:148280011	10:104396474	intron	intron	translocation/5'-5'	0	0	0	55	74	low	.	.	.	.	.	ENSG00000234283	ENSG00000120051	.	.	upstream	downstream	mismatches	.	.	.
FAT1	RILPL1(604),MIR3908(2086)	-/.	./.	4:186598220	12:123534323	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000083857	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC105252.1(292282),AC079380.1(3756)	NF2(5978),AC004882.1(680)	./.	./.	4:133867490	22:29704576	intergenic	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216922	21:8442769	intron	intron	inversion/3'-3'	0	0	0	10	2	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105252.1(292285),AC079380.1(3753)	AC104109.4	./.	-/.	4:133867493	5:134225648	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000273345	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105252.1(292285),AC079380.1(3753)	AC104109.3	./.	-/.	4:133867493	5:134225648	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000272772	.	.	upstream	upstream	mismatches(1)	.	.	.
PPP2CA	DACT2(25892),AL138918.1(29028)	-/.	./.	5:134225645	6:168345669	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113575	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104109.3	DACT2(25892),AL138918.1(29028)	-/.	./.	5:134225645	6:168345669	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272772	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ADH5P3	DLG2	+/.	-/.	1:240171177	11:85484190	exon	intron	translocation	0	1	0	0	279	low	.	.	.	.	.	ENSG00000223694	ENSG00000150672	.	.	upstream	upstream	min_support	.	.	.
LINC02291	MEGF11	-/.	-/.	14:97647629	15:66235020	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000197176	ENSG00000157890	.	.	downstream	downstream	mismatches(1)	.	.	.
AL589740.1	ANO4	+/.	+/.	6:97686565	12:100982073	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000271860	ENSG00000151572	.	.	upstream	upstream	mismatches(1)	.	.	.
AC013717.1	ANO4	+/.	+/.	2:44185315	12:100982073	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000285542	ENSG00000151572	.	.	upstream	upstream	mismatches(1)	.	.	.
PPM1B	ANO4	+/.	+/.	2:44185315	12:100982073	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000138032	ENSG00000151572	.	.	upstream	upstream	mismatches(1)	.	.	.
ANO4	AL596245.1(5516),FAM47B(168592)	+/.	./.	12:100982073	X:34774204	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000151572	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL136114.1	INTS10	-/.	+/.	1:177884290	8:19842928	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227579	ENSG00000104613	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4498),AP001994.1(77183)	AF064860.1	./.	+/.	11:119744121	21:39679803	intergenic	intron	translocation	0	0	0	3002	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4496),AP001994.1(77185)	AF064860.1	./.	+/.	11:119744119	21:39679803	intergenic	intron	translocation	0	0	0	3583	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4494),AP001994.1(77187)	AF064860.1	./.	+/.	11:119744117	21:39679803	intergenic	intron	translocation	0	0	0	3583	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4492),AP001994.1(77189)	AF064860.1	./.	+/.	11:119744115	21:39679803	intergenic	intron	translocation	0	0	0	3583	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4490),AP001994.1(77191)	AF064860.1	./.	+/.	11:119744113	21:39679803	intergenic	intron	translocation	0	0	0	3583	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4488),AP001994.1(77193)	AF064860.1	./.	+/.	11:119744111	21:39679803	intergenic	intron	translocation	0	0	0	3583	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4486),AP001994.1(77195)	AF064860.1	./.	+/.	11:119744109	21:39679803	intergenic	intron	translocation	0	0	0	3583	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
LINC02620	AF064860.1	-/.	+/.	10:104479906	21:39679803	intron	intron	translocation/3'-3'	0	0	0	1761	34	low	.	.	.	.	.	ENSG00000225768	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
LINC02620	AF064860.1	-/.	+/.	10:104479900	21:39679803	intron	intron	translocation/3'-3'	0	0	0	2216	34	low	.	.	.	.	.	ENSG00000225768	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4484),AP001994.1(77197)	AF064860.1	./.	+/.	11:119744107	21:39679803	intergenic	intron	translocation	0	0	0	3583	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
LINC01237	CENPJ	+/.	-/.	2:241961650	13:24895769	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233806	ENSG00000151849	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	12:105046145	12:105046192	intron	intron	duplication/3'-3'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000136010	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC01237	RNU7-69P(11172),CHCHD2P1(1698)	+/.	./.	2:241961650	X:123783311	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233806	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC01237	GRIA4	+/.	+/.	2:241961650	11:105839834	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000233806	ENSG00000152578	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC087516.1(44632),AC087516.2(50174)	PEDS1-UBE2V1	./.	-/.	15:36388798	20:50139064	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000124208	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
WDR81	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	17:1724797	21:8255907	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167716	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262584	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
WDR81	FP236383.3	+/.	+/.	17:1724797	21:8394736	5'UTR	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000167716	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RDXP1(3597),SSU72P5(17600)	WDR81	./.	+/.	11:4215688	17:1724797	intergenic	5'UTR	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000167716	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1(23082),AC108865.1(141165)	AC025470.2	./.	+/.	4:186749804	5:57533337	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000250961	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02778(54020),LINC01748(311912)	GALNTL6	./.	+/.	1:60203804	4:171889007	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000174473	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02778(54020),LINC01748(311912)	AL606970.1	./.	-/.	1:60203804	6:168301834	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000224417	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GAU1	PRKCA	-/.	+/.	12:4702203	17:66876179	intron	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000255474	ENSG00000154229	.	.	downstream	downstream	mismatches	.	.	.
KMT2C	GAU1	-/.	-/.	7:152694837	12:4702125	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	ENSG00000055609	ENSG00000255474	.	.	downstream	upstream	duplicates(1)	.	.	.
FABP5P3	AC005833.1	+/.	+/.	7:152437546	12:4702125	intron	intron	translocation	0	0	0	1	19	low	.	.	.	.	.	ENSG00000241735	ENSG00000255639	.	.	downstream	upstream	mismatches(1)	.	.	.
DACH1	AL133335.1(198311),DOK5(7740)	-/.	./.	13:71446606	20:54467853	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000276644	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PPDPFL(8659),AC044893.1(1549)	AL133335.1(198311),DOK5(7740)	./.	./.	8:49084752	20:54467853	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CLVS2(48776),TRDN(94638)	AL442224.1	./.	+/.	6:123121701	9:93856886	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000231990	.	.	upstream	downstream	mismatches(1)	.	.	.
ERBB4	CLVS2(48776),TRDN(94638)	-/.	./.	2:212294076	6:123121701	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000178568	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CLVS2(48774),TRDN(94640)	LINC01049	./.	+/.	6:123121699	13:90518268	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000234384	.	.	upstream	downstream	mismatches(1)	.	.	.
CLVS2(48774),TRDN(94640)	OR2A12	./.	+/.	6:123121699	7:144093442	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000221858	.	.	upstream	upstream	mismatches(1)	.	.	.
MRPL57P1(19408),AL035410.2(55303)	AL133335.1(198311),DOK5(7740)	./.	./.	1:114298683	20:54467853	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4504),AP001994.1(77177)	+/.	./.	1:225078878	11:119744127	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
RNA5SP528(276872),DEFB115(164518)	AL133335.1(198311),DOK5(7740)	./.	./.	20:31093146	20:54467853	intergenic	intergenic	deletion	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02624(180698),RPL23AP59(180686)	AL133335.1(198311),DOK5(7740)	./.	./.	10:106369420	20:54467853	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SPATA31B1P	AL133335.1(198311),DOK5(7740)	-/-	./+	9:82058633	20:54467853	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000231649	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003071.1	5_8S_rRNA(2089),FP236383.3(121621)	+/.	./.	11:69104798	21:8259022	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000260895	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PAX3	MEF2C-AS1	-/.	+/.	2:222298765	5:89384729	5'UTR	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135903	ENSG00000248309	.	.	downstream	upstream	homopolymer(1)	.	.	.
TPCN2	5_8S_rRNA(2089),FP236383.3(121621)	+/.	./.	11:69104798	21:8259022	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000162341	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC110588.1(155448),FAM149B1P1(50022)	FP236383.3	./.	+/.	15:96706965	21:8397828	intergenic	intron	translocation	1	0	0	1	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
AP003071.1	FP236383.3	+/.	+/.	11:69104798	21:8442057	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000260895	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003071.5	FP236383.3	+/.	+/.	11:69104798	21:8442057	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000287725	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TPCN2	FP236383.3	+/.	+/.	11:69104798	21:8442057	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000162341	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003071.1	FP671120.4	+/.	+/.	11:69104798	21:8214793	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000260895	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AL390778.2(53765),C9orf62(36776)	AL390778.2(53816),C9orf62(36725)	./.	./.	9:135306473	9:135306524	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AP003071.5	FP236383.3	+/.	+/.	11:69104798	21:8397827	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000287725	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RNF150	GLP2R	-/.	+/.	4:140906975	17:9862139	intron	intron	translocation/3'-3'	0	0	0	0	28	low	.	.	.	.	.	ENSG00000170153	ENSG00000065325	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RTN1	GLP2R	-/.	+/.	14:59870262	17:9862139	intron	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000139970	ENSG00000065325	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HSD11B1L	UAP1L1(154),MAN1B1-DT(253)	+/+	./+	19:5681243	9:137084693	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167733	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPL36	UAP1L1(154),MAN1B1-DT(253)	+/+	./+	19:5681243	9:137084693	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000130255	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNF150	KRT19P4(10027),PBLD(11134)	-/.	./.	4:140906975	10:68271526	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000170153	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KRT19P4(10027),PBLD(11134)	RTN1	./.	-/.	10:68271526	14:59870262	intergenic	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000139970	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	11:82143096	11:82143105	intron	intron	duplication/ITD	0	0	0	1125	1119	low	.	.	.	.	.	ENSG00000245832	ENSG00000245832	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060765.2(685),AC105031.1(16800)	TMEM109	./.	+/.	8:82962611	11:60915748	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000110108	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8215506	21:8399956	intron	intron	inversion/3'-3'	0	0	0	2	205	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
HMGB3P23(617061),RNA5SP281(31337)	HMGB3P23(617076),RNA5SP281(31322)	./.	./.	9:32262221	9:32262236	intergenic	intergenic	duplication/ITD	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092266.1(404857),LSINCT5(45711)	PCAT1	./.	+/.	5:2666880	8:127055956	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000253438	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092266.1(404856),LSINCT5(45712)	SEMA3A	./.	-/.	5:2666879	7:84018590	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000075213	.	.	downstream	upstream	mismatches(1)	.	.	.
TMCO3(3175),TFDP1(26956)	TMEM255B	./.	+/.	13:113557765	13:113557776	intergenic	intergenic	duplication	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000184497	.	.	upstream	downstream	low_entropy(1)	.	.	.
NGB	NGB	-/.	-/.	14:77269666	14:77269681	intron	intron	duplication/ITD	0	0	0	9	8	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP671120.4	H2BW2(9537),H2BW3P(10551)	+/.	./.	21:8214800	X:104051991	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
FP236383.3	TMSB15B(20158),H2BW1(24277)	+/.	./.	21:8397834	X:103986870	intron	intergenic	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
FP236383.3	H2BW2(9537),H2BW3P(10551)	+/.	./.	21:8397834	X:104051991	intron	intergenic	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
FP236383.3	Y_RNA(5812),MAP7D2(15742)	+/.	./.	21:8444140	X:19990971	intron	intergenic	translocation	0	0	0	19	21	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2096),FP236383.3(121614)	TMSB15B(20158),H2BW1(24277)	./.	./.	21:8259029	X:103986870	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
5_8S_rRNA(2096),FP236383.3(121614)	H2BW2(9537),H2BW3P(10551)	./.	./.	21:8259029	X:104051991	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
FP236383.3	TMSB15B(20158),H2BW1(24277)	+/.	./.	21:8442064	X:103986870	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
ANKRD11(63),SPG7(95)	DHX58	./.	-/.	16:89490624	17:42105719	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000108771	.	.	upstream	downstream	mismatches(1)	.	.	.
NLN	RCAN2	+/.	-/.	5:65780433	6:46265024	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000123213	ENSG00000172348	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNND2	RCAN2	-/-	-/+	5:11384814	6:46265024	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000169862	ENSG00000172348	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01060	CDK14	+/.	+/.	4:188533877	7:90751922	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	ENSG00000058091	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK14	GDA	+/.	+/.	7:90751922	9:72149977	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000058091	ENSG00000119125	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK14	DLG2	+/.	-/.	7:90751922	11:85484194	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000058091	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
Y_RNA(7440),AC245102.1(5669)	KRT8P27(3758),GRPEL2P2(69547)	./.	./.	X:53332114	X:64628331	intergenic	intergenic	deletion	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RBFOX1	Y_RNA(7440),AC245102.1(5669)	+/.	./.	16:6222319	X:53332114	intron	intergenic	translocation	0	0	0	22	0	low	.	.	.	.	.	ENSG00000078328	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	Y_RNA(7440),AC245102.1(5669)	./.	./.	3:35255769	X:53332114	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FYTTD1	PDS5A	+/.	-/.	3:197763951	4:39875785	intron	intron	translocation/3'-3'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000122068	ENSG00000121892	.	.	upstream	downstream	mismatches(1)	.	.	.
PDS5A	INTS10	-/.	+/.	4:39875785	8:19832970	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	ENSG00000104613	.	.	downstream	downstream	mismatches(1)	.	.	.
CREB5(21057),TRIL(106407)	SDS	./.	-/.	7:28846951	12:113410017	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000135094	.	.	downstream	downstream	mismatches(1)	.	.	.
CREB5(21058),TRIL(106406)	ALKBH4	./.	-/.	7:28846952	7:102462104	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000160993	.	.	downstream	upstream	mismatches(1)	.	.	.
TRIML2(3902),RNU6-173P(8026)	DRAIC	./.	+/.	4:188113505	15:69801657	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000245750	.	.	downstream	downstream	mismatches(1)	.	.	.
NCK2	INTS10	+/.	+/.	2:105860317	8:19842928	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000071051	ENSG00000104613	.	.	upstream	upstream	mismatches(1)	.	.	.
ATR	TYMSP1(8893),AL355143.1(9094)	-/.	./.	3:142542060	6:96663035	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175054	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC000120.3	FP236383.3	-/.	+/.	7:92234877	21:8444816	CDS	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000285953	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC000120.3	FP671120.4	-/.	+/.	7:92234877	21:8217546	CDS	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000285953	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
KRIT1	FP236383.3	-/.	+/.	7:92234877	21:8400584	CDS	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000001631	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC000120.3	FP236383.3	-/.	+/.	7:92234877	21:8400584	CDS	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000285953	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SLCO5A1	SIPA1L3	-/.	+/.	8:69690372	19:38061877	intron	intron	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000105738	.	.	downstream	downstream	mismatches(1)	.	.	.
SLCO5A1	AC008751.2	-/.	+/.	8:69690369	19:58166798	intron	exon	translocation/3'-3'	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000269236	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008751.2	FP236383.3	+/.	+/.	19:58166798	21:8444816	exon	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000269236	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008751.2	FP236383.3	+/.	+/.	19:58166798	21:8400584	exon	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000269236	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SIPA1L3	FP671120.4	+/.	+/.	19:38061877	21:8217543	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000105738	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02261(3855),IGBP1P5(299065)	FP236383.3	./.	+/.	4:27286080	21:8444816	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02261(3855),IGBP1P5(299065)	FP671120.4	./.	+/.	4:27286080	21:8217546	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
KPNA2(42038),FBXO36P1(5666)	FP236383.3	./.	+/.	17:68089402	21:8444816	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785689	intron	intron	translocation	0	0	0	144	496	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
KPNA2(42038),FBXO36P1(5666)	FP236383.3	./.	+/.	17:68089402	21:8400584	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SLCO5A1	AC005562.1	-/.	+/.	8:69690369	17:30591105	intron	intron	translocation/3'-3'	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000214719	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005562.1	FP236383.3	+/.	+/.	17:30591105	21:8444816	intron	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000214719	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4496),AP001994.1(77185)	FP236383.3	./.	+/.	11:119744119	21:8414016	intergenic	intron	translocation	0	0	0	3583	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
SIPA1L3	FP236383.3	+/.	+/.	19:38061877	21:8400581	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000105738	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL031282.2	DSCAM	-/.	-/.	1:1709385	21:40526472	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000268575	ENSG00000171587	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK11A	DSCAM	-/.	-/.	1:1709385	21:40526472	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000008128	ENSG00000171587	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK11B	DSCAM	-/.	-/.	1:1642253	21:40526472	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000248333	ENSG00000171587	.	.	downstream	downstream	mismatches(1)	.	.	.
WNT5A	FP236383.3	-/.	+/.	3:55486456	21:8397824	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000114251	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
WNT5A	FP236383.3	-/.	+/.	3:55486456	21:8442054	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000114251	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL033530.1	DACT2(25892),AL138918.1(29028)	+/.	./.	1:68798537	6:168345669	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285407	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL033530.1	U3(104497),GPC1(41723)	+/.	./.	1:68798537	2:240393940	intron	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	ENSG00000285407	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL136114.1	AC022826.2	-/.	-/.	1:177458845	8:73820119	intron	intron	translocation/3'-3'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000227579	ENSG00000258677	.	.	downstream	downstream	mismatches(1)	.	.	.
TMA16	UBE2W	+/.	-/.	4:163516436	8:73820119	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000198498	ENSG00000104343	.	.	downstream	downstream	mismatches(1)	.	.	.
NLGN1	AC022826.2	+/.	-/.	3:173833398	8:73820119	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000169760	ENSG00000258677	.	.	downstream	downstream	mismatches(1)	.	.	.
VCP	VPS51	-/.	+/.	9:35072603	11:65111789	5'UTR	3'UTR	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000165280	ENSG00000149823	.	.	downstream	upstream	mismatches(1)	.	.	.
VCP	PIGQ(5212),RAB40C(36)	-/.	./.	9:35072603	16:589321	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000165280	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RHEB	VCP	-/-	-/-	7:151519933	9:35072603	5'UTR	5'UTR	translocation	0	0	0	0	4	low	.	.	|AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),Cell_division_protein_48_(CDC48)__N-terminal_domain(100%),Cell_division_protein_48_(CDC48)__domain_2(100%),Vps4_C_terminal_oligomerisation_domain(100%)	.	.	ENSG00000106615	ENSG00000165280	.	.	upstream	downstream	mismatches(1)	.	.	.
SDHAF3(6449),AC073900.1(12496)	5_8S_rRNA(2693),FP236383.3(121017)	./.	./.	7:97188212	21:8259626	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SDHAF3(6449),AC073900.1(12496)	FP236383.3	./.	+/.	7:97188212	21:8442660	intergenic	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	MRTFA	+/.	-/.	21:8215397	22:40519854	intron	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000196588	.	.	upstream	upstream	mismatches(1)	.	.	.
RARB	FP236383.3	+/.	+/.	3:25373702	21:8437078	intron	intron	translocation	0	0	0	1	55	low	.	.	.	.	.	ENSG00000077092	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
CC2D2B	5_8S_rRNA(2693),FP236383.3(121017)	+/.	./.	10:95984176	21:8259626	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188649	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CC2D2B	FP236383.3	+/.	+/.	10:95984176	21:8398431	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188649	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NR2F2-AS1	FP671120.4	-/.	+/.	15:96174456	21:8215397	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000247809	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SOX5P1(35912),AC005066.1(42001)	XPO6(20),GAPDHP35(27708)	./.	./.	8:87825600	16:28211985	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012409.2	FP671120.4	+/.	+/.	15:96174456	21:8215397	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000275443	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
NR2F2-AS1	5_8S_rRNA(2693),FP236383.3(121017)	-/.	./.	15:96174456	21:8259626	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000247809	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU7-62P(49537),CACHD1(36133)	AC072026.2	./.	-/.	1:64433996	3:120815292	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000286827	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NR2F2-AS1	FP236383.3	-/.	+/.	15:96174456	21:8398431	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000247809	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2693),FP236383.3(121017)	MRTFA	./.	-/.	21:8259626	22:40519854	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000196588	.	.	upstream	upstream	mismatches(1)	.	.	.
NR2F2-AS1	FP236383.3	-/.	+/.	15:96174456	21:8442660	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000247809	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479906	X:133661640	intron	intron	translocation/3'-3'	0	0	0	1761	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	duplicates	.	.	.
RNLS	FP671120.4	-/.	+/.	10:88455394	21:8215397	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000184719	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
RNLS	5_8S_rRNA(2693),FP236383.3(121017)	-/.	./.	10:88455394	21:8259626	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184719	.	.	.	upstream	upstream	mismatches(2)	.	.	.
RNLS	FP236383.3	-/.	+/.	10:88455394	21:8442660	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000184719	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
ATF6	FP671120.4	+/.	+/.	1:161819246	21:8215397	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000118217	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
ATF6	FP236383.3	+/.	+/.	1:161819246	21:8442660	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000118217	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
FP236383.3	MRTFA	+/.	-/.	21:8398431	22:40519854	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000196588	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L8	MT-RNR2	-/.	+/.	11:10508407	MT:2609	5'UTR	exon	translocation/3'-3'	0	0	0	70	.	low	.	.	.	.	.	ENSG00000255823	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MTRNR2L12	MT-RNR2	-/.	+/.	3:96617454	MT:2609	5'UTR	exon	translocation/3'-3'	0	0	0	70	.	low	.	.	.	.	.	ENSG00000269028	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL356131.1(332836),MTRNR2L9(181)	MT-RNR2	./.	+/.	6:61574147	MT:2609	intergenic	exon	translocation	0	0	0	65	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DHFR	MT-RNR2	-/.	+/.	5:80650266	MT:2609	intron	exon	translocation/3'-3'	0	0	0	68	.	low	.	.	.	.	.	ENSG00000228716	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262473	6:42262482	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262479	6:42262488	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262481	6:42262490	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262485	6:42262494	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785695	2:101785794	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785693	2:101785791	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CDK12	CDK12	+/.	+/.	17:39481627	17:39481696	intron	intron	duplication/ITD	0	0	0	34	34	low	.	.	.	.	.	ENSG00000167258	ENSG00000167258	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092999.1(88055),IQCJ-SCHIP1(2359)	ARID5B	./.	+/.	3:158959876	10:61952101	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150347	.	.	upstream	upstream	mismatches(1)	.	.	.
LHFPL2	AC004852.2(134346),GAPDHP68(290775)	-/.	./.	5:78676318	7:9324203	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000145685	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004852.2(134346),GAPDHP68(290775)	DACH2	./.	+/.	7:9324203	X:86655736	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000126733	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02225(171106),LINC02101(37363)	LHFPL2	./.	-/.	5:58070268	5:78676319	intergenic	intron	deletion	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000145685	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02225(171106),LINC02101(37363)	DACH2	./.	+/.	5:58070268	X:86655735	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000126733	.	.	downstream	downstream	mismatches(1)	.	.	.
RNF34	FP671120.4	+/.	+/.	12:121407133	21:8217555	intron	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000170633	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7(147),5_8S_rRNA(1120)	HS6ST2	./.	-/.	21:8255661	X:132708551	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000171004	.	.	upstream	downstream	mismatches(1)	.	.	.
DLG2	Z99497.2(139327),AL589669.1(77252)	-/.	./.	11:85484191	X:147103812	intron	intergenic	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	DACH2	+/.	+/.	21:8394491	X:86655735	intron	intron	translocation	0	0	0	1	7	low	.	.	.	.	.	ENSG00000280441	ENSG00000126733	.	.	upstream	downstream	mismatches(1)	.	.	.
AL589645.1	AC010320.4	+/.	-/.	9:34810172	19:52335071	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287368	ENSG00000269535	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM68	FP236383.3	-/.	+/.	8:55769425	21:8394491	intron	intron	translocation/3'-3'	0	0	0	7	1	low	.	.	.	.	.	ENSG00000167904	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LHFPL2	FP236383.3	-/.	+/.	5:78676319	21:8438701	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000145685	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1372453	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	DACH2	+/.	+/.	21:8438701	X:86655735	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000280441	ENSG00000126733	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM68	FP236383.3	-/.	+/.	8:55769425	21:8438701	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000167904	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092999.1(88054),IQCJ-SCHIP1(2360)	HS6ST2	./.	-/.	3:158959875	X:132708551	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000171004	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004852.2(134346),GAPDHP68(290775)	ARID5B	./.	+/.	7:9324203	10:61952101	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150347	.	.	downstream	upstream	mismatches(1)	.	.	.
CLIC4	UBE2W	+/.	-/.	1:24839659	8:73820119	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000169504	ENSG00000104343	.	.	downstream	downstream	mismatches(3)	.	.	.
SEMA4F	AC011592.1(946275),LARP7P4(131419)	+/.	./.	2:74654669	3:145392119	intron	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000135622	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPS3AP40(7055),AC004923.1(1077)	AC025580.2	./.	+/.	11:67933486	15:45462786	intergenic	intron	translocation	0	0	0	24	7	low	.	.	.	.	.	.	ENSG00000259354	.	.	upstream	downstream	mismatches(2)	.	.	.
SEMA4F	SLC24A2	+/.	-/.	2:74654669	9:19595438	intron	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000135622	ENSG00000155886	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SEMA4F	CNTNAP3	+/.	-/.	2:74654669	9:39272896	intron	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000135622	ENSG00000106714	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1374317	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
C2CD5	SLC37A1	-/.	+/.	12:22483090	21:42496352	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000111731	ENSG00000160190	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC053513.1	SLC37A1	+/.	+/.	12:22483090	21:42496352	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000250166	ENSG00000160190	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PCDH10	AGAP1	+/+	+/+	4:133151469	2:235495001	CDS	intron	translocation	0	0	0	2	0	low	.	.	Cadherin-like(100%),Cadherin_domain(57%)|Ankyrin_repeats_(3_copies)(100%),Putative_GTPase_activating_protein_for_Arf(100%),Ras_family(100%)	.	.	ENSG00000138650	ENSG00000157985	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SEMA4F	SGPP2	+/.	+/.	2:74654668	2:222556344	intron	intron	inversion/3'-3'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000135622	ENSG00000163082	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SEMA4F	AL118523.1	+/.	+/.	2:74654669	20:39809714	intron	intron	translocation/5'-5'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000135622	ENSG00000229976	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC37A1	FGF13(108636),SNURFL(30627)	+/.	./.	21:42496352	X:139331413	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000160190	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DYNC1I2	AC008014.1	+/+	+/+	2:171748182	12:46639336	3'UTR	intron	translocation	0	0	0	0	32	low	.	.	Cytoplasmic_dynein_1_intermediate_chain_2(100%),WD_domain__G-beta_repeat(100%)|	.	.	ENSG00000077380	ENSG00000257261	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002463.1	GDA	+/.	+/.	7:112751480	9:72149977	intron	intron	translocation/3'-3'	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	ENSG00000119125	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC002463.1	FP236383.3	+/.	+/.	7:112751479	21:8444603	intron	intron	translocation/3'-3'	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC002463.1	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	7:112751486	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000223646	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CHL1	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	3:323470	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000134121	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CHL1	FP236383.3	+/.	+/.	3:323470	21:8397434	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000134121	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CHL1	FP236383.3	+/.	+/.	3:323470	21:8441654	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000134121	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CHL1	DLG2	+/.	-/.	3:323470	11:85484188	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000134121	ENSG00000150672	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC01060	UTRN	+/.	+/.	4:188533877	6:144823828	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	ENSG00000152818	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
UTRN	GDA	+/.	+/.	6:144823828	9:72149977	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152818	ENSG00000119125	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
UTRN	FP236383.3	+/.	+/.	6:144823834	21:8397434	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000152818	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
UTRN	FP671120.4	+/.	+/.	6:144823834	21:8214396	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000152818	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
UTRN	FP236383.3	+/.	+/.	6:144823834	21:8441654	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000152818	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
UTRN	DLG2	+/.	-/.	6:144823834	11:85484188	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000152818	ENSG00000150672	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC002463.1	FP236383.3	+/.	+/.	7:112751486	21:8441654	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000223646	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NPM1P14(89234),AC002463.1(5536)	FP236383.3	./.	+/.	7:112610904	21:8397434	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NPM1P14(89234),AC002463.1(5536)	FP671120.4	./.	+/.	7:112610904	21:8214396	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NPM1P14(89234),AC002463.1(5536)	FP236383.3	./.	+/.	7:112610904	21:8441654	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NPM1P14(89234),AC002463.1(5536)	DLG2	./.	-/.	7:112610904	11:85484188	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CREBRF	AC002463.1	+/.	+/.	5:173056549	7:112751479	intron	intron	translocation	0	0	0	0	39	low	.	.	.	.	.	ENSG00000164463	ENSG00000223646	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC002463.1	CEMIP2(21729),ABHD17B(24033)	+/.	./.	7:112751480	9:71838419	intron	intergenic	translocation	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ELFN1	UACA	+/.	-/.	7:1707994	15:70743470	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000225968	ENSG00000137831	.	.	downstream	upstream	mismatches(1)	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10904),AP000345.1(8363)	./.	./.	22:23558642	22:23558701	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
RARB	FP671120.3(3894),FP671120.7(549)	+/.	./.	3:25373702	21:8254043	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000077092	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
DRAM2	AC067960.1(83668),AC079988.1(5933)	-/.	./.	1:111140177	2:121172394	5'UTR	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000156171	.	.	.	downstream	downstream	mismatches(1)	.	.	.
STX8	RPS27AP20(98222),BX890604.1(1706)	-/.	./.	17:9328034	X:3815822	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000170310	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GPR149	AC026336.1(1956),AC026336.2(30566)	-/.	./.	3:154428073	12:130219113	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000174948	.	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(1685),FP236383.3(122025)	GAPDHP16(18527),AF127577.4(25054)	./.	./.	21:8258618	21:14793789	intergenic	intergenic	inversion	0	0	0	543	5	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ABHD4	HMCES	+/+	+/+	14:22603593	3:129305727	CDS	3'UTR	translocation	0	0	0	0	0	low	.	.	alpha/beta_hydrolase_fold(14%)|	.	.	ENSG00000100439	ENSG00000183624	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	GAPDHP16(18527),AF127577.4(25054)	+/.	./.	21:8397433	21:14793789	intron	intergenic	inversion	0	0	0	543	5	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021206	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FP671120.4	GAPDHP16(18527),AF127577.4(25054)	+/.	./.	21:8214395	21:14793789	intron	intergenic	inversion	0	0	0	540	5	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	GAPDHP16(18527),AF127577.4(25054)	+/.	./.	21:8441653	21:14793789	intron	intergenic	inversion	0	0	0	546	5	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	GAPDHP16(18527),AF127577.4(25054)	-/.	./.	11:85484187	21:14793789	intron	intergenic	translocation	0	0	0	279	5	low	.	.	.	.	.	ENSG00000150672	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092944.1	CLCN5	+/.	+/.	3:157252490	X:50007382	intron	intron	translocation/3'-3'	0	0	0	26	4	low	.	.	.	.	.	ENSG00000243176	ENSG00000171365	.	.	upstream	upstream	low_entropy	.	.	.
LMCD1-AS1	IQCH	-/.	+/.	3:8591012	15:67310424	intron	intron	translocation	0	0	0	1	40	low	.	.	.	.	.	ENSG00000227110	ENSG00000103599	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	11:3702314	11:3702329	intron	intron	duplication/ITD	0	0	0	179	159	low	.	.	.	.	.	ENSG00000110713	ENSG00000110713	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AL080313.1	AC093627.22	+/.	-/.	6:14402223	7:117610	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000234540	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4374),AP001994.1(77307)	AP003390.1(4383),AP001994.1(77298)	./.	./.	11:119743997	11:119744006	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP003390.1(4498),AP001994.1(77183)	CLMP	./.	-/.	11:119744121	11:123119081	intergenic	intron	inversion	0	0	0	3002	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4496),AP001994.1(77185)	CLMP	./.	-/.	11:119744119	11:123119081	intergenic	intron	inversion	0	0	0	3583	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
RPS3AP40(7055),AC004923.1(1077)	RPS3AP40(7072),AC004923.1(1060)	./.	./.	11:67933486	11:67933503	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
AP003390.1(4494),AP001994.1(77187)	CLMP	./.	-/.	11:119744117	11:123119081	intergenic	intron	inversion	0	0	0	3583	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4492),AP001994.1(77189)	CLMP	./.	-/.	11:119744115	11:123119081	intergenic	intron	inversion	0	0	0	3583	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4490),AP001994.1(77191)	CLMP	./.	-/.	11:119744113	11:123119081	intergenic	intron	inversion	0	0	0	3583	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4486),AP001994.1(77195)	CLMP	./.	-/.	11:119744109	11:123119081	intergenic	intron	inversion	0	0	0	3583	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4502),AP001994.1(77179)	CLMP	./.	-/.	11:119744125	11:123119081	intergenic	intron	inversion	0	0	0	3002	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4506),AP001994.1(77175)	CLMP	./.	-/.	11:119744129	11:123119081	intergenic	intron	inversion	0	0	0	3002	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
DDX43P2(110159),AC092448.1(154203)	DDX43P2(110215),AC092448.1(154147)	./.	./.	7:49370005	7:49370061	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC012085.1(14957),CRADD(20832)	AC012085.1(15011),CRADD(20778)	./.	./.	12:93656543	12:93656597	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TPT1P14(48517),RPL35AP37(90457)	TPT1P14(48532),RPL35AP37(90442)	./.	./.	X:15026980	X:15026995	intergenic	intergenic	duplication/ITD	0	0	0	26	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
AC008537.1	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	19:40861889	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000268797	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC106845.1	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	8:13173581	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000287134	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DLC1	MTFR1P1(64623),AL592049.1(10946)	-/.	./.	8:13173581	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000164741	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL645608.6	ARF4P1(24142),BX649632.1(28656)	+/.	./.	1:905264	9:134103586	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272438	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL645608.6	SLC22A23	+/.	-/.	1:905264	6:3390094	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272438	ENSG00000137266	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC012405.1	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	15:46643904	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000287704	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NSL1	MTFR1P1(64623),AL592049.1(10946)	-/.	./.	1:212743374	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000117697	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FBXO36(16078),SLC16A14(5785)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	2:230029197	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CR1	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	1:207632594	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000203710	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ASIC2	MTFR1P1(64623),AL592049.1(10946)	-/.	./.	17:33043136	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000108684	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CREBBP	AC025442.2(9210),SREK1(36824)	-/-	./+	16:3793458	5:66103147	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	TAZ_zinc_finger(19%)|	.	.	ENSG00000005339	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MTFR1P1(64623),AL592049.1(10946)	CD40LG(3317),ARHGEF6(1840)	./.	./.	X:66426399	X:136663707	intergenic	intergenic	inversion	0	0	0	48	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521075	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(1)	.	.	.
RASL11A(11256),RNU6-70P(57239)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	13:27286448	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NACAD(1310),TBRG4(9821)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	7:45090279	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL645608.6	CA5A	+/.	-/.	1:905264	16:87900499	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272438	ENSG00000174990	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDX19B	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	16:70294292	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000157349	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL158038.1(220542),MIR4704(24009)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	13:66194241	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SIMC1	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	5:176291547	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000170085	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC35A1	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	6:87494636	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000164414	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
KLHL25(8775),RNU6-231P(18155)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	15:85803700	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL139317.5	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	14:52824145	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000285664	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL645608.6	CA5AP1	+/.	-/.	1:905264	16:29631912	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272438	ENSG00000260133	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
STEAP2-AS1	IQCH	-/.	+/.	7:90004455	15:67310424	intron	intron	translocation/3'-3'	0	0	0	0	40	low	.	.	.	.	.	ENSG00000227646	ENSG00000103599	.	.	downstream	upstream	mismatches(1)	.	.	.
ATP1B1	IQCH-AS1	+/.	-/.	1:169119930	15:67310424	intron	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	ENSG00000143153	ENSG00000259673	.	.	upstream	upstream	mismatches(1)	.	.	.
IQCH-AS1	PRPS1	-/.	+/.	15:67310424	X:107651962	intron	3'UTR	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000259673	ENSG00000147224	.	.	upstream	upstream	mismatches(1)	.	.	.
IQCH	PRPS1	+/.	+/.	15:67310424	X:107651962	intron	3'UTR	translocation/3'-3'	0	0	0	40	0	low	.	.	.	.	.	ENSG00000103599	ENSG00000147224	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNH8	SNX16	+/.	-/.	3:19308688	8:81842469	intron	intron	translocation	0	0	0	119	76	low	.	.	.	.	.	ENSG00000183960	ENSG00000104497	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AL033504.1	MIR4300HG	+/.	-/.	6:147790827	11:82143174	intron	intron	translocation	0	0	0	25	1095	low	.	.	.	.	.	ENSG00000227681	ENSG00000245832	.	.	downstream	downstream	low_entropy	.	.	.
AC117383.1	PXYLP1	-/.	+/.	3:141268163	3:141268207	intron	intron	duplication/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000249417	ENSG00000155893	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL033504.1	MIR4300HG	+/.	-/.	6:147790827	11:82143175	intron	intron	translocation	0	0	0	25	1095	low	.	.	.	.	.	ENSG00000227681	ENSG00000245832	.	.	downstream	downstream	low_entropy	.	.	.
AL033504.1	AP003390.1(4504),AP001994.1(77177)	+/.	./.	6:147790827	11:119744127	intron	intergenic	translocation	0	0	0	25	3002	low	.	.	.	.	.	ENSG00000227681	.	.	.	downstream	downstream	low_entropy	.	.	.
AL033504.1	AP001823.1(3429),ELMOD1(759)	+/.	./.	6:147790827	11:107590332	intron	intergenic	translocation	0	0	0	25	1909	low	.	.	.	.	.	ENSG00000227681	.	.	.	downstream	upstream	low_entropy	.	.	.
AL033504.1	AP001823.1(3428),ELMOD1(760)	+/.	./.	6:147790827	11:107590331	intron	intergenic	translocation	0	0	0	25	1909	low	.	.	.	.	.	ENSG00000227681	.	.	.	downstream	upstream	low_entropy	.	.	.
AL353660.1	TAF15	+/.	+/.	13:74357989	17:35736065	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286330	ENSG00000270647	.	.	upstream	downstream	mismatches(1)	.	.	.
NPSR1	AL353660.1	+/.	+/.	7:34667447	13:74357986	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187258	ENSG00000286330	.	.	downstream	upstream	mismatches(1)	.	.	.
ELK2AP(5850),IGHA1(24831)	FP236383.3	./.	+/.	14:105679164	21:8397818	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ELK2AP(5841),IGHA1(24840)	5_8S_rRNA(2080),FP236383.3(121630)	./.	./.	14:105679155	21:8259013	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ELK2AP(5841),IGHA1(24840)	FP236383.3	./.	+/.	14:105679155	21:8397818	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ELK2BP(9047),IGHA2(24990)	FP236383.3	./.	+/.	14:105558741	21:8442048	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ELK2BP(9056),IGHA2(24981)	FP236383.3	./.	+/.	14:105558750	21:8442048	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104777.1	ASMTL	-/.	-/.	2:150617538	X:1437475	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000169093	.	.	upstream	downstream	mismatches(1)	.	.	.
ELK2BP(9056),IGHA2(24981)	FP236383.3	./.	+/.	14:105558750	21:8397818	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008691.1	Y_RNA(7440),AC245102.1(5669)	+/.	./.	5:159645741	X:53332114	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ELK2AP(5850),IGHA1(24831)	5_8S_rRNA(2080),FP236383.3(121630)	./.	./.	14:105679164	21:8259013	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ELK2AP(5850),IGHA1(24831)	FP236383.3	./.	+/.	14:105679164	21:8442048	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ELK2BP(9047),IGHA2(24990)	FP236383.3	./.	+/.	14:105558741	21:8397818	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	AATK	./.	-/.	2:218108703	17:81127562	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000181409	.	.	downstream	upstream	homopolymer(1)	.	.	.
RUFY4(18121),CXCR2(16587)	GOLGA7B	./.	+/.	2:218108702	10:97864901	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000155265	.	.	downstream	upstream	homopolymer(1)	.	.	.
CDAN1	RUFY4(18120),CXCR2(16588)	-/-	./-	15:42727689	2:218108701	CDS	intergenic	translocation	0	0	0	0	193	low	.	.	Codanin-1_C-terminus(100%)|	.	.	ENSG00000140326	.	.	.	upstream	downstream	mismatches(1)	.	.	.
C2orf83	C2orf83	-/.	-/.	2:227643250	2:227643290	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000042304	ENSG00000042304	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262468	6:42262482	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MAP1LC3BP1(11863),SLC24A2(31065)	FP236383.3	./.	+/.	9:19476387	21:8442057	intergenic	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PRMT8(957),CRACR2A(11703)	FP236383.3	./.	+/.	12:3594930	21:8442058	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP1LC3BP1(11863),SLC24A2(31065)	FP671120.4	./.	+/.	9:19476387	21:8214793	intergenic	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
PRMT8(957),CRACR2A(11703)	FP671120.4	./.	+/.	12:3594930	21:8214794	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP1LC3BP1(11863),SLC24A2(31065)	FP236383.3	./.	+/.	9:19476387	21:8397827	intergenic	intron	translocation	0	0	0	4	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PRMT8(957),CRACR2A(11703)	FP236383.3	./.	+/.	12:3594930	21:8397828	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FNDC1	TSPEAR(11743),UBE2G2(45265)	+/.	./.	6:159217732	21:44723315	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000164694	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ADCY1	LINC00316(23252),MTCO1P3(10949)	+/.	./.	7:45597306	21:45365242	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000164742	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM63A(705),LEFTY1(3197)	LINC00316(23252),MTCO1P3(10949)	./.	./.	1:225883085	21:45365242	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ADM	5_8S_rRNA(2091),FP236383.3(121619)	+/+	./+	11:10306618	21:8259024	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	Calcitonin_/_CGRP_/_IAPP_family(100%)|	.	.	ENSG00000148926	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.3(2618),FP671120.7(1825)	FP236383.3	./.	+/.	21:8252767	21:8442045	intergenic	intron	deletion/read-through	0	0	0	9	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.3(2618),FP671120.7(1825)	FP236383.3	./.	+/.	21:8252767	21:8397815	intergenic	intron	deletion/read-through	0	0	0	9	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
ZFYVE28	FP236383.3	-/.	+/.	4:2334332	21:8389452	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159733	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GTF2IRD1P1	FP236383.3	-/.	+/.	7:66824572	21:8442060	intron	intron	translocation/3'-3'	0	0	0	8	5962	low	.	.	.	.	.	ENSG00000230583	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GTF2IRD1P1	FP671120.4	-/.	+/.	7:66824572	21:8214796	intron	intron	translocation/3'-3'	0	0	0	8	5263	low	.	.	.	.	.	ENSG00000230583	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
GTF2IRD1P1	FP236383.3	-/.	+/.	7:66824572	21:8397830	intron	intron	translocation/3'-3'	0	0	0	8	1126	low	.	.	.	.	.	ENSG00000230583	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL603650.1	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	9:134868371	21:8259021	exon	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000232355	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DLGAP2	SHANK2	+/.	-/.	8:741757	11:70679117	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000198010	ENSG00000162105	.	.	downstream	upstream	mismatches(1)	.	.	.
ZMAT4	FP236383.3	-/.	+/.	8:40888775	21:8442056	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000165061	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL603650.1	FP236383.3	+/.	+/.	9:134868371	21:8442056	exon	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000232355	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ZMAT4	FP671120.4	-/.	+/.	8:40888775	21:8214792	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000165061	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AL603650.1	FP671120.4	+/.	+/.	9:134868371	21:8214792	exon	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000232355	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
KIF1A	FP236383.3	-/.	+/.	2:240741632	21:8442058	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000130294	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4B	CACNA1I	-/.	+/.	19:50548287	22:39592312	intron	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000131409	ENSG00000100346	.	.	downstream	downstream	mismatches(1)	.	.	.
NYAP2	LRRC4B	+/.	-/.	2:225590925	19:50548286	intron	intron	translocation	0	0	0	1	14	low	.	.	.	.	.	ENSG00000144460	ENSG00000131409	.	.	downstream	downstream	mismatches(1)	.	.	.
HEATR5B	LRRC4B	-/.	-/.	2:36971172	19:50548286	intron	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000008869	ENSG00000131409	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	CACNA1I	+/.	+/.	21:8397828	22:39592309	intron	intron	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000100346	.	.	upstream	downstream	mismatches(1)	.	.	.
SAFB2	FP236383.3	-/.	+/.	19:5589367	21:8397828	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000130254	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SAFB2	5_8S_rRNA(2090),FP236383.3(121620)	-/.	./.	19:5589367	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000130254	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KIF1A	5_8S_rRNA(2090),FP236383.3(121620)	-/.	./.	2:240741632	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000130294	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SNTG2	SUN2	+/.	-/.	2:1349091	22:38769013	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172554	ENSG00000100242	.	.	upstream	downstream	mismatches(1)	.	.	.
NYAP2	FP671120.4	+/.	+/.	2:225590921	21:8214794	intron	intron	translocation	0	0	0	1	5263	low	.	.	.	.	.	ENSG00000144460	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SSPOP	CSK(8121),LMAN1L(1397)	+/.	./.	7:149787750	15:74811319	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197558	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
SAFB2	FP671120.4	-/.	+/.	19:5589367	21:8214794	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000130254	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
KIF1A	FP671120.4	-/.	+/.	2:240741632	21:8214794	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000130294	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
NYAP2	FP236383.3	+/.	+/.	2:225590921	21:8442058	intron	intron	translocation	0	0	0	1	5962	low	.	.	.	.	.	ENSG00000144460	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GOLIM4(142575),EGFEM1P(11023)	LRRC4B	./.	-/.	3:168238499	19:50548286	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000131409	.	.	downstream	downstream	mismatches(1)	.	.	.
CD22(1751),FFAR1(2440)	FP236383.3	./.	+/.	19:35349112	21:8397819	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009242.1	AC009242.1	-/.	-/.	2:23670918	2:23670931	intron	intron	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	ENSG00000283031	ENSG00000283031	.	.	upstream	downstream	duplicates(14),low_entropy(2)	.	.	.
ADCY1	DHRS4	+/.	+/.	7:45682481	14:23955149	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	ENSG00000157326	.	.	upstream	upstream	mismatches(1)	.	.	.
ADCY1	ZNF132(117),AC012313.8(178)	+/.	./.	7:45682481	19:58440270	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC090151.1	ADCY1	+/+	+/+	8:54697049	7:45682481	exon	intron	translocation	0	0	0	0	0	low	.	.	|Adenylate_and_Guanylate_cyclase_catalytic_domain(52%)	.	.	ENSG00000253114	ENSG00000164742	.	.	downstream	upstream	mismatches(1)	.	.	.
ADCY1	TBC1D4	+/.	-/.	7:45682481	13:75410426	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	ENSG00000136111	.	.	upstream	downstream	mismatches(1)	.	.	.
NPAS2	HLA-DRB5	+/.	-/.	2:100937996	6:32519404	intron	CDS	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000170485	ENSG00000198502	.	.	upstream	downstream	mismatches(1)	.	.	.
COL23A1	ADCY1	-/.	+/.	5:178553644	7:45682481	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000050767	ENSG00000164742	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-DRB5	SMARCA4	-/.	+/.	6:32519404	19:11024893	CDS	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000198502	ENSG00000127616	.	.	downstream	downstream	mismatches(1)	.	.	.
ADCY1	FEM1AP1	+/.	+/.	7:45682482	21:13762990	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	ENSG00000229231	.	.	upstream	upstream	mismatches(1)	.	.	.
ADCY1	FEM1A	+/.	+/.	7:45682482	19:4792519	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	ENSG00000141965	.	.	upstream	upstream	mismatches(1)	.	.	.
PANK4	ADCY1	-/.	+/.	1:2510864	7:45682481	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157881	ENSG00000164742	.	.	downstream	upstream	mismatches(1)	.	.	.
ADCY1	TUBGCP3(127),AL139384.2(14496)	+/.	./.	7:45682482	13:112588332	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GYG1	FP671120.7(134),5_8S_rRNA(1133)	+/.	./.	3:149003468	21:8255648	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000163754	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GYG1	FP236383.3	+/.	+/.	3:149003468	21:8438688	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000163754	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
BX470209.2	FP236383.3	-/.	+/.	9:89797938	21:8394478	exon	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000236507	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4511),AP001994.1(77170)	+/.	./.	1:225078866	11:119744134	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4502),AP001994.1(77179)	ADCK1(85586),FXNP1(39342)	./.	./.	11:119744125	14:78020600	intergenic	intergenic	translocation	0	0	0	3002	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
AL592295.1	CDC20B(51),MCIDAS(46336)	+/.	./.	1:161406098	5:55173228	exon	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC01144	AC022384.1	+/+	+/+	1:45304504	3:10249513	exon	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281912	ENSG00000272410	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01144	TATDN2	+/+	+/+	1:45304504	3:10249513	exon	CDS	translocation	0	0	0	0	0	low	.	.	|TatD_related_DNase(100%)	.	.	ENSG00000281912	ENSG00000157014	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC114321.1(205467),AC026403.1(21399)	AC023632.3(701),AC023632.4(3451)	./.	./.	5:166360906	8:94590960	intergenic	intergenic	translocation	0	0	0	10	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LMNA	PFKFB3	+/+	+/-	1:156139608	10:6145879	3'UTR	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	Intermediate_filament_protein(100%),Lamin_Tail_Domain(100%)|	.	.	ENSG00000160789	ENSG00000170525	.	.	downstream	downstream	mismatches(1)	.	.	.
AL031432.4(4663),AL031432.5(56)	AC092100.1	./.	-/.	1:25239438	7:69204253	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000225718	.	.	downstream	downstream	mismatches(1)	.	.	.
LMNA	ZNF521	+/+	-/+	1:156139608	18:25350313	3'UTR	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	Intermediate_filament_protein(100%),Lamin_Tail_Domain(100%)|	.	.	ENSG00000160789	ENSG00000198795	.	.	downstream	upstream	mismatches(1)	.	.	.
LMNA	AKAIN1	+/+	-/+	1:156139608	18:5197133	3'UTR	5'UTR	translocation/5'-5'	0	0	0	6	0	low	.	.	Intermediate_filament_protein(100%),Lamin_Tail_Domain(100%)|	.	.	ENSG00000160789	ENSG00000231824	.	.	downstream	upstream	mismatches(1)	.	.	.
LMNA	RING1	+/+	+/-	1:156139608	6:33208896	3'UTR	CDS	translocation/5'-5'	0	0	0	6	0	low	.	.	Intermediate_filament_protein(100%),Lamin_Tail_Domain(100%)|	.	.	ENSG00000160789	ENSG00000204227	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749057	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
ASAP1(79927),AC090987.1(71698)	SVIL	./.	-/.	8:130523601	10:29510763	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000197321	.	.	downstream	upstream	mismatches(1)	.	.	.
BRINP1	BRINP1	-/.	-/.	9:119219647	9:119219662	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000078725	ENSG00000078725	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
FAM107A	FAM107A	-/.	-/.	3:58570584	3:58570599	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000168309	ENSG00000168309	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
GHR(6367),AC113368.1(893)	GHR(6424),AC113368.1(836)	./.	./.	5:42728245	5:42728302	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051983	1:161059767	intron	intron	duplication	0	0	0	97	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
FAM217B(5302),CDH26(4441)	FAM217B(5317),CDH26(4426)	./.	./.	20:59953982	20:59953997	intergenic	intergenic	duplication/ITD	0	0	0	9	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
YWHAZ	FP671120.7(414),5_8S_rRNA(853)	-/.	./.	8:100917283	21:8255928	3'UTR	intergenic	translocation	0	0	0	5	143	low	.	.	.	.	.	ENSG00000164924	.	.	.	downstream	downstream	mismatches	.	.	.
ZNF19	TAT-AS1(6223),AC009097.2(39298)	-/.	./.	16:71521081	16:71584410	intron	intergenic	deletion/read-through	0	0	0	45	5	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521051	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(1),inconsistently_clipped(1)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521053	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(3),inconsistently_clipped(1)	.	.	.
CLOCK	AC104123.1	-/.	+/.	4:55546071	5:96361270	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134852	ENSG00000251314	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104123.1	AL023802.1(893),RN7SKP252(13278)	+/.	./.	5:96361270	22:49725399	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079988.1(29932),TFCP2L1(4075)	AC104123.1	./.	+/.	2:121212512	5:96361270	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000251314	.	.	upstream	upstream	mismatches(1)	.	.	.
ELK2BP(9047),IGHA2(24990)	5_8S_rRNA(2080),FP236383.3(121630)	./.	./.	14:105558741	21:8259013	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RTN1	AL133493.1(6600),PCBP3(11419)	-/.	./.	14:59870262	21:45632275	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139970	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3443),ELMOD1(745)	AP001823.1(3542),ELMOD1(646)	./.	./.	11:107590346	11:107590445	intergenic	intergenic	duplication/ITD	0	0	0	1914	672	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
APC2	FP236383.3	+/+	+/+	19:1468505	21:8442046	CDS	intron	translocation	0	0	0	4	5962	low	.	.	APC_repeat(100%),Adenomatous_polyposis_coli_(APC)_repeat(100%),Adenomatous_polyposis_coli_tumour_suppressor_protein(100%),Armadillo-associated_region_on_APC(100%),Armadillo/beta-catenin-like_repeat(100%),Coiled-coil_N-terminus_of_APC__dimerisation_domain(100%),SAMP_Motif(100%)|	.	.	ENSG00000115266	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
ACOXL	INTS10	+/.	+/.	2:111097457	8:19842928	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153093	ENSG00000104613	.	.	upstream	upstream	mismatches(1)	.	.	.
ASAP1	GABBR2	-/.	-/.	8:130071028	9:98697851	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000153317	ENSG00000136928	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
MUC3A	FP671120.6	+/+	-/-	7:100963209	21:8211356	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000169894	ENSG00000280800	.	.	downstream	downstream	mismatches(1)	.	.	.
MUC3A	FP236383.4	+/+	-/-	7:100963209	21:8394391	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000169894	ENSG00000280614	.	.	downstream	downstream	mismatches(1)	.	.	.
MUC3A	FP671120.7	+/+	-/-	7:100963209	21:8255564	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000169894	ENSG00000281383	.	.	downstream	downstream	mismatches(1)	.	.	.
LUC7L3	ARHGEF6	+/.	-/.	17:50719772	X:136675361	CDS	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000108848	ENSG00000129675	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00707	ARHGEF6	+/.	-/.	10:6788934	X:136675361	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000238266	ENSG00000129675	.	.	downstream	downstream	mismatches(1)	.	.	.
AL158210.1	ARHGEF6	+/.	-/.	10:6788934	X:136675361	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000285743	ENSG00000129675	.	.	downstream	downstream	mismatches(1)	.	.	.
AC021220.2	TGFBI	+/+	+/-	4:55161387	5:136044142	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000287060	ENSG00000120708	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02477(84331),RPS14P7(147274)	TGFBI	./.	+/.	4:160671148	5:136044142	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000120708	.	.	upstream	downstream	mismatches(1)	.	.	.
TGFBI	HAUS8	+/.	-/.	5:136044142	19:17049912	intron	CDS	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000120708	ENSG00000131351	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916550	21:8442287	intron	intron	translocation/5'-5'	0	0	0	47	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
TGFBI	DGKI	+/.	-/.	5:136044142	7:137517385	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000120708	ENSG00000157680	.	.	downstream	downstream	mismatches(1)	.	.	.
TGFBI	AL807742.1	+/.	-/.	5:136044142	X:21066904	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120708	ENSG00000283380	.	.	downstream	upstream	mismatches(1)	.	.	.
AL117348.2	UBE2W	-/.	-/.	1:225887708	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255835	ENSG00000104343	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL117348.2	AC022826.2	-/.	-/.	1:225887708	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255835	ENSG00000258677	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LEFTY1	AC022826.2	-/.	-/.	1:225887708	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000243709	ENSG00000258677	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GRIN3A	FAT1(23081),AC108865.1(141166)	-/-	./+	9:101738355	4:186749803	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198785	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC239799.1(36128),RNU6-1071P(14661)	BX284632.1(7530),BMS1P13(3118)	./.	./.	1:146273935	9:65825002	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL117329.1	FAT1(23081),AC108865.1(141166)	+/+	./+	22:47975451	4:186749803	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000224271	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	MED30(6274),EXT1(247954)	./.	./.	4:186749803	8:117546536	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FAT1(23083),AC108865.1(141164)	ZNF780A	./.	-/.	4:186749805	19:40090463	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000197782	.	.	upstream	upstream	mismatches(1)	.	.	.
FAT1(23083),AC108865.1(141164)	AC005614.2	./.	-/.	4:186749805	19:40090463	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000269749	.	.	upstream	upstream	mismatches(1)	.	.	.
FAT1(23083),AC108865.1(141164)	MICAL3	./.	-/.	4:186749805	22:17796198	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000243156	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	ZNF780A	-/.	-/.	7:117610	19:40090463	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000197782	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	MICAL3	-/.	-/.	7:117610	22:17796198	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000243156	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262477	6:42262486	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ASTN2	MYOM3	-/-	-/-	9:117414625	1:24060637	CDS	intron	translocation	0	0	0	0	0	low	.	.	|Immunoglobulin_I-set_domain(32%)	.	.	ENSG00000148219	ENSG00000142661	.	.	upstream	downstream	mismatches(1)	.	.	.
AC002463.1	FP236383.3	+/.	+/.	7:112751486	21:8397434	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000223646	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ASTN2	AL591178.1	-/-	+/-	9:117414625	1:24060637	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148219	ENSG00000225315	.	.	upstream	downstream	mismatches(1)	.	.	.
MYOM3	TEX261	-/.	-/.	1:24060637	2:70994857	intron	5'UTR	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000142661	ENSG00000144043	.	.	downstream	downstream	mismatches(1)	.	.	.
AL591178.1	TEX261	+/.	-/.	1:24060637	2:70994857	intron	5'UTR	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000225315	ENSG00000144043	.	.	downstream	downstream	mismatches(1)	.	.	.
AL591178.1	AC007040.2	+/.	-/.	1:24060637	2:70994857	intron	5'UTR	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000225315	ENSG00000258881	.	.	downstream	downstream	mismatches(1)	.	.	.
BRI3	DMRT1	+/+	+/-	7:98281744	9:872806	5'UTR	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000164713	ENSG00000137090	.	.	downstream	downstream	mismatches(1)	.	.	.
BRI3	NBDY	+/+	+/-	7:98281744	X:56756824	5'UTR	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000164713	ENSG00000204272	.	.	downstream	downstream	mismatches(1)	.	.	.
ABCD3	BCL2(412),KDSR(7186)	+/+	./-	1:94418450	18:63320540	5'UTR	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000117528	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BCL2(412),KDSR(7186)	SHANK1	./.	-/.	18:63320540	19:50695114	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000161681	.	.	downstream	downstream	mismatches(1)	.	.	.
AL591178.1	SHANK1	+/.	-/.	1:24060637	19:50695114	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000225315	ENSG00000161681	.	.	downstream	downstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	BAIAP2L1(191),PPIAP82(52838)	./.	./.	4:186749803	7:98401281	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	ZDHHC11	./.	-/.	4:186749803	5:844537	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188818	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDX1	FAT1(23081),AC108865.1(141166)	+/.	./.	2:15619027	4:186749803	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000079785	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	Y_RNA(5788),MAP7D2(15766)	+/.	./.	21:8399905	X:19990947	intron	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HDAC5	FAT1(23081),AC108865.1(141166)	-/-	./+	17:44078031	4:186749803	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	TPCN1	./.	+/.	4:186749803	12:113295637	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000186815	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PLCL1	PLCL1	+/.	+/.	2:198277603	2:198277612	intron	intron	duplication/ITD	0	0	0	193	1	low	.	.	.	.	.	ENSG00000115896	ENSG00000115896	.	.	upstream	downstream	low_entropy(1)	.	.	.
TET1P1(1937),LINC00373(248458)	AC092275.1	./.	+/.	13:87894409	16:85260115	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000287787	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021209	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(4)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	6:93664688	6:93664781	intron	intron	duplication/ITD	0	0	0	22	15	low	.	.	.	.	.	ENSG00000287683	ENSG00000287683	.	.	upstream	downstream	low_entropy(2)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	6:93664689	6:93664786	intron	intron	duplication/ITD	0	0	0	22	15	low	.	.	.	.	.	ENSG00000287683	ENSG00000287683	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LCORL(171739),AC093898.1(225047)	VAV2	./.	-/.	4:18193615	9:133801530	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000160293	.	.	upstream	downstream	mismatches(1)	.	.	.
AC068759.1	L3MBTL3	+/.	+/.	3:173217195	6:130019862	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000237473	ENSG00000198945	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	EIF3C	-/.	+/.	11:85484193	16:28724081	intron	intron	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000184110	.	.	upstream	upstream	mismatches(1)	.	.	.
AC068759.1	VAV2	+/.	-/.	3:173217197	9:133801530	intron	intron	translocation/3'-3'	0	0	0	4	9	low	.	.	.	.	.	ENSG00000237473	ENSG00000160293	.	.	upstream	downstream	mismatches(1)	.	.	.
L3MBTL3	SLC1A6	+/.	-/.	6:130019862	19:14978046	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198945	ENSG00000105143	.	.	upstream	upstream	mismatches(1)	.	.	.
VAV2	SLC1A6	-/.	-/.	9:133801530	19:14978048	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000160293	ENSG00000105143	.	.	downstream	upstream	mismatches(1)	.	.	.
GSK3B	L3MBTL3	-/.	+/.	3:119943801	6:130019862	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000082701	ENSG00000198945	.	.	downstream	upstream	mismatches(1)	.	.	.
GSK3B	VAV2	-/.	-/.	3:119943799	9:133801530	intron	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000082701	ENSG00000160293	.	.	downstream	downstream	mismatches(1)	.	.	.
L3MBTL3	AC009806.1(63105),AC107881.1(15254)	+/.	./.	6:130019862	11:12604072	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000198945	.	.	.	upstream	downstream	mismatches(1)	.	.	.
WNT5A	VAV2	-/.	-/.	3:55474088	9:133801530	intron	intron	translocation/3'-3'	0	0	0	1	9	low	.	.	.	.	.	ENSG00000114251	ENSG00000160293	.	.	downstream	downstream	mismatches(1)	.	.	.
L3MBTL3	LINC02126	+/.	-/.	6:130019862	16:65150300	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000198945	ENSG00000259847	.	.	upstream	upstream	mismatches(1)	.	.	.
RPSAP24(19187),OLA1(9380)	L3MBTL3	./.	+/.	2:174063067	6:130019862	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000198945	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6-138P(192043),KCNH8(1418)	L3MBTL3	./.	+/.	3:19147092	6:130019862	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000198945	.	.	upstream	upstream	mismatches(1)	.	.	.
AC084357.2	AL354809.1	-/.	+/.	12:63768104	13:39108817	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000249753	ENSG00000273507	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU6-138P(192045),KCNH8(1416)	VAV2	./.	-/.	3:19147094	9:133801530	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000160293	.	.	upstream	downstream	mismatches(1)	.	.	.
LCORL(171737),AC093898.1(225049)	L3MBTL3	./.	+/.	4:18193613	6:130019862	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000198945	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02267	AC093875.1(209856),LINC02511(32324)	+/.	./.	4:96442733	4:136763595	intron	intergenic	deletion	0	0	0	0	8	low	.	.	.	.	.	ENSG00000248510	.	.	.	downstream	upstream	mismatches(1)	.	.	.
VAV2	AL158090.1(75593),GAPDHP53(51712)	-/.	./.	9:133801530	20:24393679	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000160293	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CTB-178M22.2	FP671120.3(4332),FP671120.7(111)	-/.	./.	5:168236204	21:8254481	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253978	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RBM47	FP671120.3(4332),FP671120.7(111)	-/.	./.	4:40520567	21:8254481	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163694	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC026202.2	FP671120.3(4332),FP671120.7(111)	-/.	./.	3:5167935	21:8254481	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233912	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARL8B	FP671120.3(4332),FP671120.7(111)	+/.	./.	3:5167935	21:8254481	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134108	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNM3	FP671120.3(4333),FP671120.7(110)	+/.	./.	1:172034252	21:8254482	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197959	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL591368.1(34388),RNA5SP287(74208)	LINC00273(638),RNA5-8SP2(2285)	./.	./.	9:81811288	16:34160674	intergenic	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022973.5	FP671120.3(4332),FP671120.7(111)	+/.	./.	8:129834827	21:8254481	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000254317	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TENM2	LINC00273(638),RNA5-8SP2(2285)	+/.	./.	5:168236204	16:34160674	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000145934	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.7(147),5_8S_rRNA(1120)	DACH2	./.	+/.	21:8255661	X:86655735	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000126733	.	.	upstream	downstream	mismatches(1)	.	.	.
RBM47	LINC00273(638),RNA5-8SP2(2285)	-/.	./.	4:40520567	16:34160674	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000163694	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC026202.2	LINC00273(638),RNA5-8SP2(2285)	-/.	./.	3:5167935	16:34160674	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000233912	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARL8B	LINC00273(638),RNA5-8SP2(2285)	+/.	./.	3:5167935	16:34160674	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000134108	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNM3	LINC00273(639),RNA5-8SP2(2284)	+/.	./.	1:172034252	16:34160675	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000197959	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L8	LINC00273(640),RNA5-8SP2(2283)	-/.	./.	11:10508743	16:34160676	5'UTR	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000255823	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHFR	LINC00273(640),RNA5-8SP2(2283)	-/.	./.	5:80650602	16:34160676	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL591368.1(34388),RNA5SP287(74208)	FP671120.4	./.	+/.	9:81811288	21:8210273	intergenic	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RBM47	FP671120.4	-/.	+/.	4:40520567	21:8210273	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000163694	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L8	FP671120.4	-/.	+/.	11:10508743	21:8210275	5'UTR	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000255823	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAK2	KIAA1217	+/.	+/.	3:196759943	10:24101825	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000180370	ENSG00000120549	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	FP671120.4	-/.	+/.	5:80650602	21:8210275	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000228716	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8210275	MT:2116	intron	exon	translocation/3'-3'	0	0	0	22	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	3:96617790	21:8210275	5'UTR	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000269028	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHFR	FP671120.3(4334),FP671120.7(109)	-/.	./.	5:80650602	21:8254483	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RBM47	FP236383.3	-/.	+/.	4:40520567	21:8393308	intron	intron	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000163694	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1371054	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
GSN	NDEL1	+/.	+/.	9:121318516	17:8463508	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000148180	ENSG00000166579	.	.	upstream	downstream	mismatches(1)	.	.	.
AC026202.2	FP236383.3	-/.	+/.	3:5167935	21:8393308	intron	intron	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000233912	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L8	FP236383.3	-/.	+/.	11:10508743	21:8393310	5'UTR	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000255823	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NRP1	CRTAC1	-/.	-/.	10:33334709	10:98026056	5'UTR	intron	deletion	0	0	0	21	11	low	.	.	.	.	.	ENSG00000099250	ENSG00000095713	.	.	downstream	upstream	mismatches(1)	.	.	.
RBM47	FP236383.3	-/.	+/.	4:40520567	21:8437518	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000163694	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNM3	FP236383.3	+/.	+/.	1:172034252	21:8437519	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000197959	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L8	FP236383.3	-/.	+/.	11:10508743	21:8437520	5'UTR	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000255823	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650602	21:8437520	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214752	21:8442012	intron	intron	duplication	0	0	0	293	14	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8437520	MT:2116	intron	exon	translocation/3'-3'	0	0	0	22	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AL591368.1(34388),RNA5SP287(74208)	FP671120.3(4332),FP671120.7(111)	./.	./.	9:81811288	21:8254481	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LIN52(32941),VSX2(5273)	LDOC1(118),SPANXA2-OT1(37)	./.	./.	14:74234176	X:141177247	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CASZ1	LIN52(32941),VSX2(5273)	-/.	./.	1:10796526	14:74234176	intron	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000130940	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LIN52(32941),VSX2(5273)	IGF2BP1	./.	+/.	14:74234176	17:48999197	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000159217	.	.	downstream	upstream	mismatches(1)	.	.	.
PRKAG2	ADAMTS1	-/.	-/.	7:151786887	21:26840442	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106617	ENSG00000154734	.	.	upstream	downstream	mismatches(1)	.	.	.
AC006478.1(21947),AC006478.2(45977)	PRKAG2	./.	-/.	7:51803109	7:151786887	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000106617	.	.	downstream	upstream	mismatches(1)	.	.	.
BAIAP2L1(190),PPIAP82(52839)	FP671120.4	./.	+/.	7:98401280	21:8214794	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(2)	.	.	.
AC104109.4	FP671120.4	-/.	+/.	5:134225648	21:8214794	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000273345	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
PPP2CA	FP236383.3	-/.	+/.	5:134225648	21:8442058	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000113575	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
AC104109.3	FP236383.3	-/.	+/.	5:134225648	21:8442058	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000272772	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
LINC01144	AC104109.4	+/+	-/+	1:45304504	5:134225646	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281912	ENSG00000273345	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01144	AC104109.3	+/+	-/+	1:45304504	5:134225646	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281912	ENSG00000272772	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104109.4	FP236383.3	-/.	+/.	5:134225648	21:8397828	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000273345	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
PPP2CA	FP236383.3	-/.	+/.	5:134225648	21:8397828	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000113575	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
P2RX4	AC092066.1(2378),CBLC(10027)	+/+	./+	12:121209959	19:44767842	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135124	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL137785.1(39816),MPPE1P1(44525)	AC012060.1(92676),LINC02248(36443)	./.	./.	14:89065623	15:26358594	intergenic	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104109.3	FP236383.3	-/.	+/.	5:134225648	21:8397828	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000272772	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
CYP51A1	CHST15	-/.	-/.	7:92133978	10:124092273	intron	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000001630	ENSG00000182022	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104109.4	5_8S_rRNA(2090),FP236383.3(121620)	-/.	./.	5:134225648	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000273345	.	.	.	upstream	upstream	mismatches(2)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262487	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
PPP2CA	5_8S_rRNA(2090),FP236383.3(121620)	-/.	./.	5:134225648	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000113575	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC104109.3	5_8S_rRNA(2090),FP236383.3(121620)	-/.	./.	5:134225648	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000272772	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC022973.5	FP671120.4	+/.	+/.	8:129834827	21:8210273	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000254317	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC109466.1	INSC(175516),AC104361.1(59084)	+/.	./.	5:164476682	11:15422724	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241956	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNAH14	AP003390.1(4505),AP001994.1(77176)	+/.	./.	1:225078866	11:119744128	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	low_entropy	.	.	.
LETM1	CCDC200	-/.	-/.	4:1841524	17:43261395	CDS	intron	translocation/3'-3'	0	0	0	32	0	low	.	.	.	.	.	ENSG00000168924	ENSG00000236383	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC109466.1	CCDC200	+/.	-/.	5:164476682	17:43261395	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241956	ENSG00000236383	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LBH	LBH	+/.	+/.	2:30304940	2:30304951	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000213626	ENSG00000213626	.	.	upstream	downstream	duplicates(8),low_entropy(4)	.	.	.
DMBX1(13980),TMEM275(1970)	LETM1	./.	-/.	1:46530196	4:1841524	intergenic	CDS	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000168924	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DMBX1(13980),TMEM275(1970)	AC109466.1	./.	+/.	1:46530196	5:164476682	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000241956	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IP6K1(3646),CDHR4(544)	AP003390.1(4493),AP001994.1(77188)	./.	./.	3:49790188	11:119744116	intergenic	intergenic	translocation	0	0	0	14	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
AL591368.1(34388),RNA5SP287(74208)	FP236383.3	./.	+/.	9:81811288	21:8437518	intergenic	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC109466.1	KCNQ3	+/.	-/.	5:164476682	8:132230326	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241956	ENSG00000184156	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL354702.1	AC092275.1	-/.	+/.	1:38786665	16:85260115	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000284632	ENSG00000287787	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LETM1	LETM1	-/-	-/-	4:1841508	4:1841524	CDS	CDS	duplication/ITD	0	0	0	0	32	low	.	.	|LETM1-like__RBD(100%)	.	.	ENSG00000168924	ENSG00000168924	.	.	upstream	downstream	duplicates(9),hairpin(1)	.	.	.
COMMD10	ITGAX	+/.	+/.	5:116216374	16:31365331	intron	intron	translocation/5'-5'	0	0	0	7	4	low	.	.	.	.	.	ENSG00000145781	ENSG00000140678	.	.	downstream	downstream	mismatches(1)	.	.	.
LETM1	INSC(175516),AC104361.1(59084)	-/.	./.	4:1841524	11:15422724	CDS	intergenic	translocation	0	0	0	32	0	low	.	.	.	.	.	ENSG00000168924	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC124290.1(81829),MTCYBP19(4740)	CR392039.1(943),CR392039.3(8123)	./.	./.	8:36273023	21:8988373	intergenic	intergenic	translocation	0	0	0	5	48	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC109466.1	KHDRBS3(10435),RNU1-35P(75186)	+/.	./.	5:164476682	8:135667157	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241956	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TBC1D4	MT-RNR2	-/.	+/.	13:75458094	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136111	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
KTN1	MBP	+/.	-/.	14:55665616	18:77131928	intron	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000126777	ENSG00000197971	.	.	downstream	upstream	mismatches(1)	.	.	.
HTRA3	ZBP1(27406),PMEPA1(410)	+/.	./.	4:8285841	20:57647982	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000170801	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HTRA3	TPTE2	+/.	-/.	4:8285841	13:19482424	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000170801	ENSG00000132958	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092334	11:88092342	intron	intron	duplication/ITD	0	0	0	1166	513	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092385	intron	intron	translocation/3'-3'	0	0	0	558	1170	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092381	intron	intron	translocation/3'-3'	0	0	0	558	1170	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092379	intron	intron	translocation/3'-3'	0	0	0	558	1166	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092377	intron	intron	translocation/3'-3'	0	0	0	558	1166	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092375	intron	intron	translocation/3'-3'	0	0	0	558	1166	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092393	intron	intron	translocation/3'-3'	0	0	0	558	1170	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092391	intron	intron	translocation/3'-3'	0	0	0	558	1170	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092373	intron	intron	translocation/3'-3'	0	0	0	558	1166	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL121790.1(4106),FOXA1(6321)	NRSN2-AS1	./.	-/.	14:37583231	20:346725	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000225377	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC35F3	FSTL5	+/.	-/.	1:234110597	4:161796717	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000183780	ENSG00000168843	.	.	upstream	downstream	mismatches(1)	.	.	.
CCDC91(237581),AC022081.1(2883)	FAR2	./.	+/.	12:28819092	12:29149772	intergenic	intron	deletion/read-through	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000064763	.	.	downstream	upstream	low_entropy(1)	.	.	.
SLC41A2	MT-RNR2	-/.	+/.	12:104952396	MT:2228	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136052	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
THEMIS	SLC41A2	-/.	-/.	6:127735531	12:104952397	intron	intron	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	ENSG00000136052	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	3:19308650	3:19308665	intron	intron	duplication/ITD	0	0	0	119	119	low	.	.	.	.	.	ENSG00000183960	ENSG00000183960	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDK12	CDK12	+/.	+/.	17:39481627	17:39481708	intron	intron	duplication/ITD	0	0	0	34	34	low	.	.	.	.	.	ENSG00000167258	ENSG00000167258	.	.	upstream	downstream	low_entropy(4)	.	.	.
LINC00575	NUP98	-/.	-/.	4:82619935	11:3702372	intron	intron	translocation/3'-3'	0	0	0	19	179	low	.	.	.	.	.	ENSG00000231782	ENSG00000110713	.	.	downstream	downstream	low_entropy	.	.	.
C16orf95	CTNND2	-/-	-/-	16:87317152	5:11535781	CDS	intron	translocation	0	0	0	0	4	low	.	.	|Armadillo/beta-catenin-like_repeat(100%)	.	.	ENSG00000260456	ENSG00000169862	.	.	upstream	downstream	mismatches(2)	.	.	.
KIAA1614	MFSD9	+/.	-/.	1:180940999	2:102719364	intron	intron	translocation/3'-3'	0	0	0	2	4	low	.	.	.	.	.	ENSG00000135835	ENSG00000135953	.	.	upstream	downstream	mismatches(1)	.	.	.
CTNND2	DIP2A(27616),S100B(973)	-/.	./.	5:11535781	21:46597631	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000169862	.	.	.	downstream	upstream	mismatches(2)	.	.	.
RN7SL423P(28136),AC009313.1(142620)	TLE4	./.	+/.	2:160905986	9:79572887	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000106829	.	.	downstream	downstream	homopolymer(1)	.	.	.
FAM83B	LINC01006	+/.	-/.	6:54859661	7:156440906	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168143	ENSG00000182648	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01006	ZNF780A	-/.	-/.	7:156440905	19:40090463	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182648	ENSG00000197782	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01006	AC005614.2	-/.	-/.	7:156440905	19:40090463	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182648	ENSG00000269749	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP214	AC005614.2	+/.	-/.	9:131197615	19:40090465	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000126883	ENSG00000269749	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01006	AC016026.1	-/.	-/.	7:156440905	22:17796198	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182648	ENSG00000093100	.	.	upstream	upstream	mismatches(1)	.	.	.
MICALL2	NUP214	-/-	+/+	7:1444968	9:131197615	CDS	CDS	translocation	0	0	0	0	0	low	.	.	Calponin_homology_(CH)_domain(100%),LIM_domain(100%)|Nucleoporin_Nup214_phenylalanine-glycine_(FG)_domain(100%)	.	.	ENSG00000164877	ENSG00000126883	.	.	upstream	upstream	mismatches(1)	.	.	.
NXF2(6014),AC235565.2(27659)	NXF2(6025),AC235565.2(27648)	./.	./.	X:102332736	X:102332747	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
AC118650.1(11670),HSPA8P13(508527)	FP236383.3	./.	+/.	8:46040562	21:8397819	intergenic	intron	translocation	0	0	0	4	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397821	21:8443762	intron	intron	inversion/3'-3'	0	0	0	1126	8	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397821	21:8399527	intron	intron	inversion/3'-3'	0	0	0	1126	9	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216493	21:8397821	intron	intron	inversion/3'-3'	0	0	0	10	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2083),FP236383.3(121627)	FP236383.3	./.	+/.	21:8259016	21:8443762	intergenic	intron	inversion	0	0	0	5911	8	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2083),FP236383.3(121627)	FP236383.3	./.	+/.	21:8259016	21:8399527	intergenic	intron	inversion	0	0	0	5911	9	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02669	LINC02669	-/.	-/.	10:3470843	10:3470942	intron	intron	duplication/ITD	0	0	0	17	16	low	.	.	.	.	.	ENSG00000233321	ENSG00000233321	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP671120.4	5_8S_rRNA(2083),FP236383.3(121627)	+/.	./.	21:8216493	21:8259016	intron	intergenic	inversion	0	0	0	10	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ADGRB3(83723),LMBRD1(199528)	5_8S_rRNA(2083),FP236383.3(121627)	./.	./.	6:69473229	21:8259016	intergenic	intergenic	translocation	0	0	0	10	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC118650.1(11670),HSPA8P13(508527)	FP236383.3	./.	+/.	8:46040562	21:8442049	intergenic	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(3789),FP236383.3(119921)	FP236383.3	./.	+/.	21:8260722	21:8442051	intergenic	intron	inversion	0	0	0	8	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ADGRB3(83723),LMBRD1(199528)	FP236383.3	./.	+/.	6:69473229	21:8397821	intergenic	intron	translocation	0	0	0	10	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8399527	21:8442051	intron	intron	inversion/3'-3'	0	0	0	9	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216493	21:8442051	intron	intron	inversion/3'-3'	0	0	0	10	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8209834	21:8442053	intron	intron	inversion/3'-3'	0	0	0	48	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
AC143336.1(94661),AC025774.1(236820)	FP236383.3	./.	+/.	5:71850962	21:8442051	intergenic	intron	translocation	0	0	0	8	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ADGRB3(83723),LMBRD1(199528)	FP236383.3	./.	+/.	6:69473229	21:8442051	intergenic	intron	translocation	0	0	0	10	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214787	21:8443762	intron	intron	inversion/3'-3'	0	0	0	5263	8	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(3789),FP236383.3(119921)	+/.	./.	21:8214787	21:8260722	intron	intergenic	inversion	0	0	0	5263	8	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214787	21:8399527	intron	intron	inversion/3'-3'	0	0	0	5263	9	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214787	21:8216493	intron	intron	inversion/3'-3'	0	0	0	5263	10	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC143336.1(94661),AC025774.1(236820)	FP671120.4	./.	+/.	5:71850962	21:8214787	intergenic	intron	translocation	0	0	0	8	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
PID1	FP236383.3	-/.	+/.	2:229181023	21:8397821	intron	intron	translocation/3'-3'	0	0	0	7	1126	low	.	.	.	.	.	ENSG00000153823	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NALCN-AS1	IQCH	+/.	+/.	13:100887371	15:67310424	intron	intron	translocation	0	0	0	2	40	low	.	.	.	.	.	ENSG00000233009	ENSG00000103599	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
NALCN-AS1	GNL3L	+/.	+/.	13:100887371	X:54578338	intron	intron	translocation/5'-5'	0	0	0	2	42	low	.	.	.	.	.	ENSG00000233009	ENSG00000130119	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL031282.2	AP000317.2	-/.	+/.	1:1709359	21:34109348	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000268575	ENSG00000272657	.	.	upstream	upstream	mismatches(1)	.	.	.
MACROD2	FP236383.3	+/.	+/.	20:15601699	21:8433768	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000172264	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6-1329P(41812),LINC02413(4661)	FP236383.3	./.	+/.	12:92994557	21:8389581	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU6-1329P(41812),LINC02413(4661)	FP671120.4	./.	+/.	12:92994557	21:8206534	intergenic	intron	translocation	0	0	0	4	9	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU6-1329P(41812),LINC02413(4661)	FP236383.3	./.	+/.	12:92994557	21:8433768	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CTNNA3	FP236383.3	-/.	+/.	10:67222695	21:8433768	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000183230	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MACROD2	FP671120.3(594),FP671120.7(3849)	+/.	./.	20:15601699	21:8250743	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000172264	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MACROD2	FP671120.4	+/.	+/.	20:15601699	21:8206534	intron	intron	translocation	0	0	0	4	9	low	.	.	.	.	.	ENSG00000172264	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
IQCH-AS1	LINC00470	-/.	-/.	15:67310435	18:1313957	intron	intron	translocation/5'-5'	0	0	0	40	19	low	.	.	.	.	.	ENSG00000259673	ENSG00000132204	.	.	upstream	upstream	mismatches(1)	.	.	.
IQCH	LINC00470	+/.	-/.	15:67310435	18:1313957	intron	intron	translocation	0	0	0	40	19	low	.	.	.	.	.	ENSG00000103599	ENSG00000132204	.	.	upstream	upstream	mismatches(1)	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16362),AC016134.1(9506)	./.	./.	15:41599880	15:41599951	intergenic	intergenic	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	FXNP1(22675),NRXN3(87420)	-/.	./.	10:104479915	14:78082953	intron	intergenic	translocation	0	0	0	1761	336	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
AC119501.1(32683),AL109741.1(12006)	AC119501.1(32692),AL109741.1(11997)	./.	./.	1:101223677	1:101223686	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP003390.1(4503),AP001994.1(77178)	FXNP1(22675),NRXN3(87420)	./.	./.	11:119744126	14:78082953	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
HIVEP2	CDK12	-/.	+/.	6:142946393	17:39535247	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000167258	.	.	downstream	upstream	mismatches(1)	.	.	.
NIPA2P2(83762),RN7SL294P(13755)	HIVEP2	./.	-/.	3:75168999	6:142946392	intergenic	intron	translocation	0	0	0	0	63	low	.	.	.	.	.	.	ENSG00000010818	.	.	downstream	downstream	mismatches(1)	.	.	.
HIVEP2	ASPH	-/.	-/.	6:142946392	8:61574983	intron	intron	translocation/3'-3'	0	0	0	63	1	low	.	.	.	.	.	ENSG00000010818	ENSG00000198363	.	.	downstream	downstream	mismatches(1)	.	.	.
NFU1P1(117316),MYRIP(46893)	PEPD	./.	-/.	3:39762021	19:33426974	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000124299	.	.	upstream	downstream	mismatches(1)	.	.	.
HIVEP2	AKAP6	-/.	+/.	6:142946392	14:32501780	intron	intron	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000151320	.	.	downstream	downstream	mismatches(1)	.	.	.
HIVEP2	AL136018.1(145152),STXBP6(6730)	-/.	./.	6:142946392	14:24802926	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81565285	15:81565363	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81565285	15:81565363	intron	intron	duplication	0	0	0	14	14	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	low_entropy(1)	.	.	.
FRMD8	C13orf42	+/+	-/+	11:65411267	13:51124781	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	FERM_central_domain(100%)|	.	.	ENSG00000126391	ENSG00000226792	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU2-64P(48023),CCDC75P1(23296)	C13orf42	./.	-/.	3:73159205	13:51124781	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000226792	.	.	downstream	upstream	mismatches(1)	.	.	.
AC113347.4(102882),CDH9(27718)	C13orf42	./.	-/.	5:26852879	13:51124781	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000226792	.	.	upstream	upstream	mismatches(1)	.	.	.
GNAI1	AC133480.1(245492),AC090503.2(141621)	+/.	./.	7:79952959	12:72974336	intron	intergenic	translocation	0	0	0	3	4	low	.	.	.	.	.	ENSG00000127955	.	.	.	upstream	downstream	mismatches(1)	.	.	.
WNT7A(15404),VN1R20P(31338)	C13orf42	./.	-/.	3:13895475	13:51124781	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000226792	.	.	downstream	upstream	mismatches(1)	.	.	.
HMGB3P23(424795),RNA5SP281(223603)	LINC02745	./.	-/.	9:32069955	11:42029388	intergenic	intron	translocation	0	0	0	5	9	low	.	.	.	.	.	.	ENSG00000255300	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092328	11:88092354	intron	intron	duplication/ITD	0	0	0	1166	513	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PHRF1	FP236383.3	+/.	+/.	11:589569	21:8397830	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000070047	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(136504),NXNP1(203197)	U3(136519),NXNP1(203182)	./.	./.	1:218678403	1:218678418	intergenic	intergenic	duplication/ITD	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(16),low_entropy(7)	.	.	.
SEMA3D(156673),DYNLL1P7(37590)	KMT2C	./.	-/.	7:85343528	7:152384544	intergenic	intron	inversion	0	0	0	64	177	low	.	.	.	.	.	.	ENSG00000055609	.	.	upstream	upstream	mismatches	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626674	X:18626683	intron	intron	duplication/ITD	0	0	0	101	101	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
PALLD	CHRNB4	+/.	-/.	4:168568975	15:78641902	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000129116	ENSG00000117971	.	.	upstream	upstream	mismatches(1)	.	.	.
CCDC3	AF279873.3	-/-	+/-	10:12896736	8:33792865	3'UTR	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000151468	ENSG00000253642	.	.	upstream	downstream	mismatches(1)	.	.	.
AF279873.3	CHRNB4	+/.	-/.	8:33792865	15:78641902	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000253642	ENSG00000117971	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC3	FHDC1	-/-	+/-	10:12896736	4:152965444	3'UTR	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000151468	ENSG00000137460	.	.	upstream	downstream	mismatches(1)	.	.	.
CHRNB4	KRT8P27(3759),GRPEL2P2(69546)	-/.	./.	15:78641902	X:64628332	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000117971	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FHDC1	CHRNB4	+/.	-/.	4:152965444	15:78641902	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000137460	ENSG00000117971	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAL1	KCNF1(69467),RPL6P4(118450)	+/+	./-	14:73644986	2:10983692	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119661	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC012363.2(19700),INHBB(138)	FAT1(23079),AC108865.1(141168)	./.	./.	2:120345998	4:186749801	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	DUX4L22(1775),DUX4L21(267)	./.	./.	3:73205777	10:133680102	intergenic	intergenic	translocation	0	0	0	15	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	DUX4L23(1775),DUX4L22(267)	./.	./.	3:73205777	10:133676792	intergenic	intergenic	translocation	0	0	0	15	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	DUX4L11(1775),DUX4L12(268)	./.	./.	3:73205777	10:133749682	intergenic	intergenic	translocation	0	0	0	15	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	DUX4L29(1779),DUX4L10(269)	./.	./.	3:73205777	10:133743063	intergenic	intergenic	translocation	0	0	0	15	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
SEMA6A	CCDC75P1(22486),RNU6-1270P(36012)	-/-	./+	5:116467887	3:73205777	5'UTR	intergenic	translocation	0	0	0	5	15	low	.	.	Plexin_repeat(100%),Sema_domain(100%)|	.	.	ENSG00000092421	.	.	.	upstream	upstream	mismatches	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	DUX4L28(1778),DUX4L25(267)	./.	./.	3:73205777	10:133666884	intergenic	intergenic	translocation	0	0	0	15	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
AC010746.2(61296),NPM1P46(5665)	AC010746.2(61389),NPM1P46(5572)	./.	./.	2:197374036	2:197374129	intergenic	intergenic	duplication/ITD	0	0	0	5	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC093912.1(103817),AC073062.1(102173)	ANXA2	./.	-/.	2:13435500	15:60355118	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182718	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GCC2	OTX2-AS1	+/.	+/.	2:108492236	14:56911663	intron	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135968	ENSG00000248550	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL033504.1	AP003390.1(4503),AP001994.1(77178)	+/.	./.	6:147790827	11:119744126	intron	intergenic	translocation	0	0	0	25	3002	low	.	.	.	.	.	ENSG00000227681	.	.	.	downstream	downstream	low_entropy	.	.	.
SLC35A4	LINC00486	+/+	+/-	5:140567237	2:32916502	CDS	intron	translocation/5'-5'	0	0	0	6	49	low	.	.	Domain_of_unknown_function_(DUF4535)(100%)|	.	.	ENSG00000176087	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
SLC35A4	LINC00486	+/+	+/-	5:140567237	2:32916556	CDS	intron	translocation/5'-5'	0	0	0	6	47	low	.	.	Domain_of_unknown_function_(DUF4535)(100%)|	.	.	ENSG00000176087	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
AP001823.1(3440),ELMOD1(748)	AP001823.1(3539),ELMOD1(649)	./.	./.	11:107590343	11:107590442	intergenic	intergenic	duplication/ITD	0	0	0	1914	672	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP001823.1(3433),ELMOD1(755)	AP001823.1(3532),ELMOD1(656)	./.	./.	11:107590336	11:107590435	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
IGHVIII-38-1(839),IGHV4-39(2573)	IGHVIII-38-1(848),IGHV4-39(2564)	./.	./.	14:106419138	14:106419147	intergenic	intergenic	duplication/ITD	0	0	0	192	162	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CKAP5	AL138701.1(32795),AL138701.2(19854)	-/.	./.	11:46754528	13:105930438	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175216	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CLASP1	RN7SL167P(47384),AP002856.3(135209)	-/.	./.	2:121357462	11:131051813	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000074054	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL592295.1	AC094105.2	+/.	+/.	1:161406098	5:2957507	exon	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	ENSG00000248736	.	.	upstream	downstream	homopolymer(1)	.	.	.
XCL1(92234),DPT(21165)	CKAP5	./.	-/.	1:168674303	11:46754528	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175216	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR3924(98083),AL731534.1(110515)	MIR3924(98096),AL731534.1(110502)	./.	./.	10:57402642	10:57402655	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FLI1	RN7SL167P(47384),AP002856.3(135209)	+/.	./.	11:128742452	11:131051813	intron	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151702	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CKAP5	FLI1	-/.	+/.	11:46754528	11:128742452	intron	intron	duplication/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175216	ENSG00000151702	.	.	upstream	downstream	mismatches(1)	.	.	.
AC096570.1	RN7SL167P(47384),AP002856.3(135209)	-/.	./.	2:22485824	11:131051813	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228999	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC096570.1	CKAP5	-/.	-/.	2:22485824	11:46754528	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228999	ENSG00000175216	.	.	downstream	upstream	mismatches(1)	.	.	.
RN7SL167P(47384),AP002856.3(135209)	Y_RNA(2738),AL359232.1(32437)	./.	./.	11:131051813	14:66180373	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAP1	AL445644.1(21509),AL161630.1(155382)	-/.	./.	7:954510	9:117487769	5'UTR	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000105963	.	.	.	downstream	downstream	mismatches(1)	.	.	.
JAKMIP2(22245),SPINK1(19552)	CKAP5	./.	-/.	5:147805020	11:46754528	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175216	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4C	RN7SL167P(47384),AP002856.3(135209)	-/.	./.	11:40175464	11:131051813	intron	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148948	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PRMT8(957),CRACR2A(11703)	5_8S_rRNA(2090),FP236383.3(121620)	./.	./.	12:3594930	21:8259023	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC122707.1(55530),RNF180(129270)	MTCYBP36	./.	-/.	5:64036573	6:94447030	intergenic	exon	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000216853	.	.	upstream	downstream	mismatches(1)	.	.	.
LRRC4C	CKAP5	-/.	-/.	11:40175464	11:46754528	intron	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148948	ENSG00000175216	.	.	downstream	upstream	mismatches(1)	.	.	.
RN7SL167P(47384),AP002856.3(135209)	SHOX(131098),AL672277.1(199712)	./.	./.	11:131051813	X:790509	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01144	NCAN	+/+	+/-	1:45304504	19:19212390	exon	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000281912	ENSG00000130287	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02542	RN7SL167P(47384),AP002856.3(135209)	-/.	./.	6:81926738	11:131051813	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226453	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02542	CKAP5	-/.	-/.	6:81926738	11:46754528	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226453	ENSG00000175216	.	.	upstream	upstream	mismatches(1)	.	.	.
IGFBP7-AS1	CKAP5	+/.	-/.	4:57146805	11:46754528	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000245067	ENSG00000175216	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006974.1	RN7SL167P(47384),AP002856.3(135209)	-/.	./.	7:148483557	11:131051813	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283504	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MTCYBP36	C12orf75(38482),AC079851.1(264589)	-/.	./.	6:94447030	12:105434579	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000216853	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SMYD3	SDK1	-/.	+/.	1:245810370	7:3589424	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000185420	ENSG00000146555	.	.	downstream	downstream	mismatches(1)	.	.	.
ZMIZ1	AC009159.1(24398),AC009159.4(31177)	+/.	./.	10:79242882	16:79644508	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000108175	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNER	TH	-/-	-/-	2:229591652	11:2166495	CDS	CDS	translocation	0	0	0	0	1	low	.	.	|Biopterin-dependent_aromatic_amino_acid_hydroxylase(45%)	.	.	ENSG00000187957	ENSG00000180176	.	.	upstream	downstream	mismatches(1)	.	.	.
FGD3	TH	+/-	-/-	9:93004198	11:2166494	intron	CDS	translocation/3'-3'	0	0	0	1	1	low	.	.	|Biopterin-dependent_aromatic_amino_acid_hydroxylase(45%)	.	.	ENSG00000127084	ENSG00000180176	.	.	upstream	downstream	mismatches(1)	.	.	.
DPY19L2P3(26258),WIPF3(37634)	CCDC6	./.	-/.	7:29768852	10:59900212	intergenic	intron	translocation	0	0	0	0	13	low	.	.	.	.	.	.	ENSG00000108091	.	.	downstream	downstream	homopolymer(1)	.	.	.
CBLB(53632),AC131237.1(237233)	TEX29(407),AL359649.1(243545)	./.	./.	3:105923184	13:111344656	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ANK2	MTCYBP4(44717),EYA4(45065)	+/.	./.	4:113275782	6:133195533	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145362	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MTNR1A(19230),FAT1(12997)	UBE2V1P9(98918),RNU6-555P(208414)	./.	./.	4:186574797	X:90388821	intergenic	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MTCYBP4(44717),EYA4(45065)	AL078602.1	./.	+/.	6:133195533	6:164005371	intergenic	intron	duplication	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000235538	.	.	upstream	downstream	mismatches(1)	.	.	.
ANK2	PLPP1	+/.	-/.	4:113275782	5:55461204	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145362	ENSG00000067113	.	.	upstream	upstream	mismatches(1)	.	.	.
PLPP1	AL078602.1	-/.	+/.	5:55461204	6:164005371	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000067113	ENSG00000235538	.	.	upstream	downstream	mismatches(1)	.	.	.
TENM4	AL352955.1(69993),AL157688.1(2081)	-/.	./.	11:79262442	14:87321672	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000149256	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL078602.1	ZNF431	+/.	+/.	6:164005371	19:21175437	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000235538	ENSG00000196705	.	.	downstream	downstream	mismatches(1)	.	.	.
ANK2	CNTNAP2	+/.	+/.	4:113275782	7:147297063	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145362	ENSG00000174469	.	.	upstream	upstream	mismatches(1)	.	.	.
ANK2	AC004936.1	+/.	-/.	4:113275782	7:10029595	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145362	ENSG00000287409	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP20DC-AS1	AL078602.1	+/.	+/.	3:58909738	6:164005371	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242428	ENSG00000235538	.	.	downstream	downstream	mismatches(1)	.	.	.
AL078602.1	CNTNAP2	+/.	+/.	6:164005371	7:147297063	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235538	ENSG00000174469	.	.	downstream	upstream	mismatches(1)	.	.	.
HESX1	AL078602.1	-/.	+/.	3:57209228	6:164005371	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000163666	ENSG00000235538	.	.	downstream	downstream	mismatches(1)	.	.	.
AC117464.1(63136),LINC00971(523850)	AL078602.1	./.	+/.	3:84114555	6:164005371	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000235538	.	.	downstream	downstream	mismatches(1)	.	.	.
ANK2	AC104012.1	+/.	-/.	4:113275782	8:71791181	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145362	ENSG00000253287	.	.	upstream	upstream	mismatches(1)	.	.	.
AL078602.1	AC104012.1	+/.	-/.	6:164005371	8:71791181	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235538	ENSG00000253287	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104498),GPC1(41722)	AC114321.1(205467),AC026403.1(21399)	./.	./.	2:240393941	5:166360906	intergenic	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ANK2	TNFSF11(150055),FAM216B(23482)	+/.	./.	4:113275782	13:42758068	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145362	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL078602.1	TNFSF11(150055),FAM216B(23482)	+/.	./.	6:164005371	13:42758068	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000235538	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CYCSP17(26487),MANEA-DT(44200)	CNTNAP2	./.	+/.	6:95530983	7:147297065	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000174469	.	.	downstream	upstream	mismatches(1)	.	.	.
SOX3	AC010616.1	-/-	-/-	X:140503859	19:41962222	CDS	intron	translocation	0	0	0	0	1	low	.	.	HMG_(high_mobility_group)_box(100%),SOX_transcription_factor(100%)|	.	.	ENSG00000134595	ENSG00000285505	.	.	upstream	downstream	mismatches(1)	.	.	.
GABRB1	AC114284.1(184736),AC008565.1(64576)	+/.	./.	4:47140059	5:120975514	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000163288	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GABRB1	MIR548AI(96),BDH2P1(49952)	+/.	./.	4:47140059	6:99124792	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000163288	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MYO7B	AL512360.1(165069),AL110505.1(73051)	+/.	./.	2:127565913	14:48984662	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000169994	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MYO7B	AL513487.1	+/.	+/.	2:127565913	X:122469961	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000169994	ENSG00000287776	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02884	MYO7B	-/.	+/.	1:112191152	2:127565913	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000231246	ENSG00000169994	.	.	upstream	downstream	mismatches(1)	.	.	.
NKX1-1(22042),AC147067.2(121800)	DACT2(25893),AL138918.1(29027)	./.	./.	4:1428484	6:168345670	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005436.1	LINC01278	-/.	-/.	11:88092448	X:63236098	intron	intron	translocation/3'-3'	0	0	0	718	1	low	.	.	.	.	.	ENSG00000255102	ENSG00000235437	.	.	downstream	downstream	mismatches	.	.	.
SLC39A14	ATP8B4	+/.	-/.	8:22396602	15:50072982	intron	intron	translocation	0	0	0	223	10	low	.	.	.	.	.	ENSG00000104635	ENSG00000104043	.	.	downstream	downstream	low_entropy	.	.	.
NGB	ATP8B4	-/.	-/.	14:77269724	15:50072982	intron	intron	translocation	0	0	0	87	10	low	.	.	.	.	.	ENSG00000165553	ENSG00000104043	.	.	upstream	downstream	low_entropy	.	.	.
HERPUD2	SLC39A14	-/.	+/.	7:35674404	8:22396602	intron	intron	translocation/5'-5'	0	0	0	21	223	low	.	.	.	.	.	ENSG00000122557	ENSG00000104635	.	.	upstream	downstream	low_entropy	.	.	.
MTRNR2L12	ARID5B	-/.	+/.	3:96618121	10:61903188	5'UTR	intron	translocation	0	0	0	80	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000150347	.	.	downstream	downstream	mismatches(1)	.	.	.
ARID5B	MTRNR2L8	+/.	-/.	10:61903188	11:10509074	intron	5'UTR	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000150347	ENSG00000255823	.	.	downstream	downstream	mismatches(1)	.	.	.
ARID5B	MT-RNR2	+/.	+/.	10:61903188	MT:1785	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000150347	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ERC2	IMPDH1(11851),AC010655.1(11319)	-/.	./.	3:55815741	7:128422103	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000187672	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
ITIH5	AC087883.2	-/.	-/.	10:7603995	12:60186047	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000123243	ENSG00000287014	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC02041(107764),SST(111698)	PRKG1	./.	+/.	3:187557214	10:51589867	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000185532	.	.	upstream	upstream	mismatches(1)	.	.	.
ITIH5	AC023161.1(12853),RN7SL483P(6181)	-/.	./.	10:7603995	12:94509295	intron	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000123243	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
PRB1	AC023161.1(12853),RN7SL483P(6181)	-/.	./.	12:11366762	12:94509295	intron	intergenic	inversion	0	0	0	0	1	low	.	.	.	.	.	ENSG00000251655	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AGAP1	RNU6-114P(12215),PRKX(19164)	+/.	./.	2:235775619	X:3585176	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157985	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FOXI3	BICC1	-/.	+/.	2:88452449	10:58688003	CDS	intron	translocation	0	0	0	2	87	low	.	.	.	.	.	ENSG00000214336	ENSG00000122870	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
CLEC11A	RNU6-114P(12214),PRKX(19165)	+/.	./.	19:50725294	X:3585175	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000105472	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GDI2	RNU6-114P(12213),PRKX(19166)	-/.	./.	10:5812961	X:3585174	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000057608	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC007405.3	AGAP1	+/.	+/.	2:170768859	2:235775619	intron	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000239467	ENSG00000157985	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007405.1	AGAP1	-/.	+/.	2:170768859	2:235775619	intron	intron	deletion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234350	ENSG00000157985	.	.	downstream	upstream	mismatches(1)	.	.	.
TMC4	BX546450.1(36086),PASD1(11344)	-/-	./-	19:54168416	X:151552331	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167608	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
NACC2	AC093515.1	-/.	-/.	9:136019086	16:7970721	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148411	ENSG00000260289	.	.	upstream	upstream	mismatches(1)	.	.	.
AC007405.3	AC239367.1(22405),AC239367.2(29056)	+/.	./.	2:170768859	X:51053762	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000239467	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093515.1	AC239367.1(22405),AC239367.2(29056)	-/.	./.	16:7970721	X:51053762	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260289	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ALK	AC064874.1	-/.	-/.	2:29845744	2:235775619	intron	intron	inversion/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171094	ENSG00000222007	.	.	upstream	upstream	mismatches(1)	.	.	.
ALK	AGAP1	-/.	+/.	2:29845744	2:235775619	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171094	ENSG00000157985	.	.	upstream	upstream	mismatches(1)	.	.	.
AC106870.3	AC239367.1(22405),AC239367.2(29056)	-/.	./.	2:29845744	X:51053762	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288553	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479809	10:104479823	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ALK	AC239367.1(22405),AC239367.2(29056)	-/.	./.	2:29845744	X:51053762	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171094	.	.	.	upstream	upstream	mismatches(1)	.	.	.
WWC1	PALM	+/.	+/.	5:168337914	19:709431	intron	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	ENSG00000099864	.	.	upstream	downstream	mismatches(1)	.	.	.
AC106870.3	CLEC11A	-/.	+/.	2:29845745	19:50725294	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288553	ENSG00000105472	.	.	upstream	upstream	mismatches(1)	.	.	.
ALK	GDI2	-/.	-/.	2:29845746	10:5812961	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171094	ENSG00000057608	.	.	upstream	upstream	mismatches(1)	.	.	.
AC007405.3	CLEC11A	+/.	+/.	2:170768858	19:50725294	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000239467	ENSG00000105472	.	.	downstream	upstream	mismatches(1)	.	.	.
AC064874.1	DUSP22	-/.	+/.	2:235775619	6:334172	intron	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000222007	ENSG00000112679	.	.	upstream	downstream	mismatches(1)	.	.	.
AGAP1	DUSP22	+/.	+/.	2:235775619	6:334172	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000157985	ENSG00000112679	.	.	upstream	downstream	mismatches(1)	.	.	.
NYAP2	FP236383.3	+/.	+/.	2:225590921	21:8397828	intron	intron	translocation	0	0	0	1	1126	low	.	.	.	.	.	ENSG00000144460	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DUSP22	AC239367.1(22405),AC239367.2(29056)	+/.	./.	6:334172	X:51053762	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000112679	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL589986.2	AC064874.1	+/.	-/.	1:152206894	2:235775619	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236427	ENSG00000222007	.	.	upstream	upstream	mismatches(1)	.	.	.
AL589986.2	AC239367.1(22405),AC239367.2(29056)	+/.	./.	1:152206894	X:51053762	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236427	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NACC2	RNU6-114P(12215),PRKX(19164)	-/.	./.	9:136019086	X:3585176	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148411	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SSPOP	GAGE13	+/.	+/.	7:149787748	X:49331987	exon	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000197558	ENSG00000274274	.	.	upstream	downstream	mismatches(1)	.	.	.
AC007405.3	GDI2	+/.	-/.	2:170768857	10:5812961	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000239467	ENSG00000057608	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007405.1	GDI2	-/.	-/.	2:170768857	10:5812961	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234350	ENSG00000057608	.	.	downstream	upstream	mismatches(1)	.	.	.
PPFIA4	CDKN1B	+/.	+/.	1:203042156	12:12717195	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000143847	ENSG00000111276	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02476	UBE2W	-/.	-/.	7:119749849	8:73820121	intron	intron	translocation/3'-3'	0	0	0	1	164	low	.	.	.	.	.	ENSG00000225546	ENSG00000104343	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02476	AC022826.2	-/.	-/.	7:119749849	8:73820121	intron	intron	translocation/3'-3'	0	0	0	1	164	low	.	.	.	.	.	ENSG00000225546	ENSG00000258677	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01381(6973),DNMT3A(11680)	FP236383.3	./.	+/.	2:25216175	21:8442056	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FOXN3	FOXN3	-/.	-/.	14:89325242	14:89325339	intron	intron	duplication/ITD	0	0	0	0	7	low	.	.	.	.	.	ENSG00000053254	ENSG00000053254	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
BAIAP2L1(191),PPIAP82(52838)	LIN52(32938),VSX2(5276)	./.	./.	7:98401281	14:74234173	intergenic	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KMT2C	THRAP3P2(6696),SLCO3A1(103057)	-/.	./.	7:152384544	15:91750651	intron	intergenic	translocation	0	0	0	177	21	low	.	.	.	.	.	ENSG00000055609	.	.	.	upstream	upstream	mismatches	.	.	.
ADGRL1	ADGRL1	-/.	-/.	19:14163462	19:14163498	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000072071	ENSG00000072071	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
ADGRL1	AC022098.1	-/.	+/.	19:14163462	19:14163498	intron	intron	duplication/5'-5'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000072071	ENSG00000267169	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC022098.1	ADGRL1	+/.	-/.	19:14163462	19:14163498	intron	intron	duplication/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000267169	ENSG00000072071	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC022098.1	AC022098.1	+/.	+/.	19:14163462	19:14163498	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000267169	ENSG00000267169	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
SNX16	LINC02620	-/.	-/.	8:81842436	10:104479914	intron	intron	translocation	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000104497	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
LINC02235	AP003390.1(4502),AP001994.1(77179)	+/.	./.	8:81842436	11:119744125	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
LMCD1-AS1	IQCH-AS1	-/.	-/.	3:8591012	15:67310424	intron	intron	translocation/5'-5'	0	0	0	1	40	low	.	.	.	.	.	ENSG00000227110	ENSG00000259673	.	.	upstream	upstream	mismatches(1)	.	.	.
SNX16	AP003390.1(4502),AP001994.1(77179)	-/.	./.	8:81842436	11:119744125	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
LINC02235	AP003390.1(4506),AP001994.1(77175)	+/.	./.	8:81842436	11:119744129	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
SNX16	AP003390.1(4506),AP001994.1(77175)	-/.	./.	8:81842436	11:119744129	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
MYO18B(24538),LINC02559(106251)	MOSPD1	./.	-/.	22:26055583	X:134914846	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000101928	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02235	AP003390.1(4501),AP001994.1(77180)	+/.	./.	8:81842436	11:119744124	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
SNX16	AP003390.1(4501),AP001994.1(77180)	-/.	./.	8:81842436	11:119744124	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
LINC02235	AP003390.1(4499),AP001994.1(77182)	+/.	./.	8:81842436	11:119744122	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
SNX16	AP003390.1(4499),AP001994.1(77182)	-/.	./.	8:81842436	11:119744122	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
LINC02235	AP003390.1(4497),AP001994.1(77184)	+/.	./.	8:81842436	11:119744120	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
HESX1	ANK2	-/.	+/.	3:57209228	4:113275782	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000163666	ENSG00000145362	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX16	AP003390.1(4497),AP001994.1(77184)	-/.	./.	8:81842436	11:119744120	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
LINC02235	AP003390.1(4495),AP001994.1(77186)	+/.	./.	8:81842436	11:119744118	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
SNX16	AP003390.1(4495),AP001994.1(77186)	-/.	./.	8:81842436	11:119744118	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
FP671120.4	HS6ST2	+/.	-/.	21:8211456	X:132708551	intron	intron	translocation/3'-3'	0	0	0	1	7	low	.	.	.	.	.	ENSG00000278996	ENSG00000171004	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02235	AP003390.1(4493),AP001994.1(77188)	+/.	./.	8:81842436	11:119744116	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
SNX16	AP003390.1(4493),AP001994.1(77188)	-/.	./.	8:81842436	11:119744116	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
LINC01035(91690),GAPDHP75(3096)	LINC01035(91704),GAPDHP75(3082)	./.	./.	1:189129254	1:189129268	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01814	IL6RP1(12012),AL161629.2(13663)	-/.	./.	2:8583565	9:90094581	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236008	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC068286.2	KIF5C	-/.	+/.	2:14919275	2:148881811	intron	intron	inversion	0	0	0	9	4	low	.	.	.	.	.	ENSG00000287291	ENSG00000168280	.	.	downstream	downstream	mismatches(1)	.	.	.
AC068286.2	KIF5C-AS1	-/.	-/.	2:14919275	2:148881811	intron	intron	inversion/3'-3'	0	0	0	9	4	low	.	.	.	.	.	ENSG00000287291	ENSG00000231079	.	.	downstream	downstream	mismatches(1)	.	.	.
UGT1A10	MTRNR2L8(1014),RNF141(1473)	+/.	./.	2:233640220	11:10510200	intron	intergenic	translocation	0	0	0	9	4	low	.	.	.	.	.	ENSG00000242515	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UGT1A8	MTRNR2L8(1014),RNF141(1473)	+/.	./.	2:233640220	11:10510200	intron	intergenic	translocation	0	0	0	9	4	low	.	.	.	.	.	ENSG00000242366	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRNR2L8(1014),RNF141(1473)	IFT46	./.	-/.	11:10510200	11:118566325	intergenic	intron	inversion	0	0	0	4	9	low	.	.	.	.	.	.	ENSG00000118096	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L8(1014),RNF141(1473)	VENTXP2(41630),AL590681.1(46762)	./.	./.	11:10510200	13:83949411	intergenic	intergenic	translocation	0	0	0	4	9	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC068286.2	MTRNR2L8(1014),RNF141(1473)	-/.	./.	2:14919275	11:10510200	intron	intergenic	translocation	0	0	0	9	4	low	.	.	.	.	.	ENSG00000287291	.	.	.	downstream	downstream	mismatches(1)	.	.	.
UGT1A10	MTCYBP13(1410),MTRNR2L1(992)	+/.	./.	2:233640220	17:22522119	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242515	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UGT1A10	BEGAIN	+/.	-/.	2:233640220	14:100552182	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242515	ENSG00000183092	.	.	upstream	downstream	mismatches(1)	.	.	.
UGT1A8	BEGAIN	+/.	-/.	2:233640220	14:100552182	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242366	ENSG00000183092	.	.	upstream	downstream	mismatches(1)	.	.	.
IFT46	BEGAIN	-/.	-/.	11:118566325	14:100552182	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000118096	ENSG00000183092	.	.	downstream	downstream	mismatches(1)	.	.	.
VENTXP2(41630),AL590681.1(46762)	BEGAIN	./.	-/.	13:83949411	14:100552182	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000183092	.	.	downstream	downstream	mismatches(1)	.	.	.
KIRREL1	UGT1A10	+/+	+/+	1:158095881	2:233640220	3'UTR	intron	translocation	0	0	0	0	9	low	.	.	CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)|UDP-glucoronosyl_and_UDP-glucosyl_transferase(47%)	.	.	ENSG00000183853	ENSG00000242515	.	.	downstream	upstream	mismatches(1)	.	.	.
KIRREL1	UGT1A8	+/+	+/+	1:158095881	2:233640220	3'UTR	intron	translocation	0	0	0	0	9	low	.	.	CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)|UDP-glucoronosyl_and_UDP-glucosyl_transferase(47%)	.	.	ENSG00000183853	ENSG00000242366	.	.	downstream	upstream	mismatches(1)	.	.	.
KIRREL1	VENTXP2(41630),AL590681.1(46762)	+/+	./-	1:158095881	13:83949411	3'UTR	intergenic	translocation	0	0	0	0	9	low	.	.	CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)|	.	.	ENSG00000183853	.	.	.	downstream	downstream	mismatches(1)	.	.	.
UGT1A10	AC016642.1	+/.	-/.	2:233640220	5:58801228	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242515	ENSG00000248475	.	.	upstream	downstream	mismatches(1)	.	.	.
UGT1A10	RAB3C	+/.	+/.	2:233640220	5:58801228	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242515	ENSG00000152932	.	.	upstream	downstream	mismatches(1)	.	.	.
UGT1A8	RAB3C	+/.	+/.	2:233640220	5:58801228	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242366	ENSG00000152932	.	.	upstream	downstream	mismatches(1)	.	.	.
AC068286.2	RAB3C	-/.	+/.	2:14919275	5:58801228	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000287291	ENSG00000152932	.	.	downstream	downstream	mismatches(1)	.	.	.
UGT1A8	NDST1	+/.	+/.	2:233640220	5:150502747	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242366	ENSG00000070614	.	.	upstream	upstream	mismatches(1)	.	.	.
NDST1	IFT46	+/.	-/.	5:150502747	11:118566325	intron	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000070614	ENSG00000118096	.	.	upstream	downstream	mismatches(1)	.	.	.
AC079779.2	SP100	+/.	+/.	2:288469	2:230450040	intron	intron	inversion/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000228643	ENSG00000067066	.	.	downstream	downstream	mismatches(1)	.	.	.
CAD(5777),SLC30A3(3964)	UGT1A10	./.	+/.	2:27249720	2:233640220	intergenic	intron	deletion	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000242515	.	.	downstream	upstream	mismatches(1)	.	.	.
CAD(5777),SLC30A3(3964)	UGT1A8	./.	+/.	2:27249720	2:233640220	intergenic	intron	deletion	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000242366	.	.	downstream	upstream	mismatches(1)	.	.	.
VENTXP2(41630),AL590681.1(46762)	MTCYBP13(1410),MTRNR2L1(992)	./.	./.	13:83949411	17:22522119	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CAD(5777),SLC30A3(3964)	IFT46	./.	-/.	2:27249720	11:118566325	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000118096	.	.	downstream	downstream	mismatches(1)	.	.	.
AC068286.2	CAD(5777),SLC30A3(3964)	-/.	./.	2:14919275	2:27249720	intron	intergenic	inversion	0	0	0	9	0	low	.	.	.	.	.	ENSG00000287291	.	.	.	downstream	downstream	mismatches(1)	.	.	.
UGT1A10	MT-RNR1	+/.	+/.	2:233640220	MT:657	intron	exon	translocation/3'-3'	0	0	0	9	.	low	.	.	.	.	.	ENSG00000242515	ENSG00000211459	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
UGT1A8	MT-RNR1	+/.	+/.	2:233640220	MT:657	intron	exon	translocation/3'-3'	0	0	0	9	.	low	.	.	.	.	.	ENSG00000242366	ENSG00000211459	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
VENTXP2(41630),AL590681.1(46762)	MT-RNR1	./.	+/.	13:83949411	MT:657	intergenic	exon	translocation	0	0	0	9	.	low	.	.	.	.	.	.	ENSG00000211459	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
KIF5C	UGT1A10	+/.	+/.	2:148881811	2:233640220	intron	intron	deletion	0	0	0	4	9	low	.	.	.	.	.	ENSG00000168280	ENSG00000242515	.	.	downstream	upstream	mismatches(1)	.	.	.
KIF5C	UGT1A8	+/.	+/.	2:148881811	2:233640220	intron	intron	deletion	0	0	0	4	9	low	.	.	.	.	.	ENSG00000168280	ENSG00000242366	.	.	downstream	upstream	mismatches(1)	.	.	.
ETNK2	FP236383.3	-/-	+/+	1:204151713	21:8442056	CDS	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000143845	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
KIF5C-AS1	UGT1A8	-/.	+/.	2:148881811	2:233640220	intron	intron	deletion/3'-3'	0	0	0	4	9	low	.	.	.	.	.	ENSG00000231079	ENSG00000242366	.	.	downstream	upstream	mismatches(1)	.	.	.
KIF5C	VENTXP2(41630),AL590681.1(46762)	+/.	./.	2:148881811	13:83949411	intron	intergenic	translocation	0	0	0	4	9	low	.	.	.	.	.	ENSG00000168280	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KIF5C-AS1	VENTXP2(41630),AL590681.1(46762)	-/.	./.	2:148881811	13:83949411	intron	intergenic	translocation	0	0	0	4	9	low	.	.	.	.	.	ENSG00000231079	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SEMA6A	SEMA6A	-/-	-/-	5:116467884	5:116467897	5'UTR	5'UTR	duplication/ITD	0	0	0	5	0	low	.	.	Plexin_repeat(100%),Sema_domain(100%)|	.	.	ENSG00000092421	ENSG00000092421	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117391	10:113117400	intron	intron	duplication/ITD	0	0	0	307	304	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(1)	.	.	.
DUX4L28(1692),DUX4L25(353)	DUX4L28(1784),DUX4L25(261)	./.	./.	10:133666798	10:133666890	intergenic	intergenic	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
DUX4L22(1689),DUX4L21(353)	DUX4L22(1781),DUX4L21(261)	./.	./.	10:133680016	10:133680108	intergenic	intergenic	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262595	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
DUX4L11(1689),DUX4L12(354)	DUX4L11(1781),DUX4L12(262)	./.	./.	10:133749596	10:133749688	intergenic	intergenic	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
PHKG2	PHKG2	+/.	+/.	16:30748999	16:30749015	intron	intron	duplication/ITD	0	0	0	188	25	low	.	.	.	.	.	ENSG00000156873	ENSG00000156873	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC106886.2	PHKG2	+/.	+/.	16:30748999	16:30749015	intron	intron	duplication	0	0	0	188	25	low	.	.	.	.	.	ENSG00000260899	ENSG00000156873	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC106886.2	AC106886.2	+/.	+/.	16:30748999	16:30749015	intron	intron	duplication/ITD	0	0	0	188	25	low	.	.	.	.	.	ENSG00000260899	ENSG00000260899	.	.	upstream	downstream	low_entropy(1)	.	.	.
MSN	MSN	+/.	+/.	X:65683386	X:65683444	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000147065	ENSG00000147065	.	.	upstream	downstream	low_entropy(1)	.	.	.
OPTC	OPTC	+/.	+/.	1:203500127	1:203500209	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	ENSG00000188770	ENSG00000188770	.	.	upstream	downstream	low_entropy(1)	.	.	.
SH3BGR	SH3BGR	+/.	+/.	21:39479224	21:39479240	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000185437	ENSG00000185437	.	.	upstream	downstream	low_entropy(1)	.	.	.
GET1-SH3BGR	SH3BGR	+/.	+/.	21:39479224	21:39479240	intron	intron	duplication	0	0	0	1	0	low	.	.	.	.	.	ENSG00000285815	ENSG00000185437	.	.	upstream	downstream	low_entropy(1)	.	.	.
GET1-SH3BGR	GET1-SH3BGR	+/.	+/.	21:39479224	21:39479240	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000285815	ENSG00000285815	.	.	upstream	downstream	low_entropy(1)	.	.	.
DNAH14	DNAH8	+/.	+/.	1:225078790	6:38804760	intron	intron	translocation/3'-3'	0	0	0	156	0	low	.	.	.	.	.	ENSG00000185842	ENSG00000124721	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	GSE1	./.	+/.	2:240393940	16:85176724	intergenic	intron	translocation	0	0	0	357	6	low	.	.	.	.	.	.	ENSG00000131149	.	.	upstream	downstream	mismatches(2)	.	.	.
U3(104494),GPC1(41726)	AC104109.4	./.	-/.	2:240393937	5:134225648	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000273345	.	.	upstream	upstream	mismatches(2)	.	.	.
AL392086.2	ARHGEF6	+/.	-/.	10:6788934	X:136675361	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000285988	ENSG00000129675	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(104494),GPC1(41726)	PPP2CA	./.	-/.	2:240393937	5:134225648	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000113575	.	.	upstream	upstream	mismatches(2)	.	.	.
U3(104494),GPC1(41726)	AC104109.3	./.	-/.	2:240393937	5:134225648	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000272772	.	.	upstream	upstream	mismatches(2)	.	.	.
LNCOG(3727),RN7SKP172(6055)	LINC00554	./.	-/.	12:76309696	13:99997487	intergenic	exon	translocation	0	0	0	1	1	low	.	.	.	.	.	.	ENSG00000260738	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CARS1P2(292195),TRPS1(324372)	UNC79	./.	+/.	8:115084124	14:93491666	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000133958	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MRPS28	UNC79	-/.	+/.	8:79952408	14:93491666	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000147586	ENSG00000133958	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF131	GRM3	+/.	+/.	5:43074075	7:86815869	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172262	ENSG00000198822	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396556	8:22396565	intron	intron	duplication/ITD	0	0	0	229	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC068286.2	SAMD3	-/.	-/.	2:14832341	6:130180681	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287291	ENSG00000164483	.	.	downstream	upstream	duplicates(2),mismatches(3)	.	.	.
LINC02235	AP003390.1(4500),AP001994.1(77181)	+/.	./.	8:81842440	11:119744123	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
LRP1B	SAMD3	-/.	-/.	2:141001141	6:130180681	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168702	ENSG00000164483	.	.	upstream	upstream	duplicates(2),mismatches(3)	.	.	.
SAMD3	AC036214.3	-/.	-/.	6:130180681	8:79952408	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164483	ENSG00000276418	.	.	upstream	upstream	duplicates(2),mismatches(3)	.	.	.
AC068286.2	UNC79	-/.	+/.	2:14832341	14:93491666	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287291	ENSG00000133958	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMEM9B	UNC79	-/.	+/.	11:8950661	14:93491666	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175348	ENSG00000133958	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01445	UNC79	+/.	+/.	7:54383890	14:93491666	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231427	ENSG00000133958	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916410	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
SORCS1(151078),RNA5SP326(145948)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	10:107315612	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GRM3	AC010723.1(196116),NLGN4Y(48968)	+/.	./.	7:86815869	Y:14473605	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198822	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ETNK2	AC105252.1(292284),AC079380.1(3754)	-/-	./+	1:204151713	4:133867492	CDS	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000143845	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MFHAS1	AC105252.1(292284),AC079380.1(3754)	-/-	./+	8:8893384	4:133867492	5'UTR	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000147324	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01381(6973),DNMT3A(11680)	AC105252.1(292284),AC079380.1(3754)	./.	./.	2:25216175	4:133867492	intergenic	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MYCT1(11995),VIP(14235)	FP236383.3	./.	+/.	6:152736562	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC22A23(73043),AL033523.1(55008)	FP236383.3	./.	+/.	6:3530093	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT8P25(238055),APOOP2(32060)	SEZ6L2	./.	-/.	3:87562778	16:29877448	intergenic	CDS	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000174938	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC22A23(73043),AL033523.1(55008)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	6:3530093	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH7	RNU6-1119P(57073),AC113385.3(164848)	-/.	./.	2:196028002	5:100210852	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000118997	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC22A23(73043),AL033523.1(55008)	FP671120.4	./.	+/.	6:3530093	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	TENM1	+/.	-/.	21:8397829	X:124846213	intron	intron	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000009694	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2091),FP236383.3(121619)	TENM1	./.	-/.	21:8259024	X:124846213	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000009694	.	.	upstream	upstream	mismatches(1)	.	.	.
MYCT1(11995),VIP(14235)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	6:152736562	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MYCT1(11995),VIP(14235)	FP671120.4	./.	+/.	6:152736562	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	12:105046145	12:105046191	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000136010	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL365204.3(90884),AL513317.1(22403)	AL365204.3(90897),AL513317.1(22390)	./.	./.	9:24047328	9:24047341	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(5)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479809	10:104479825	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AKAP17A	MUC4	+/+	-/-	X:1599529	3:195752910	CDS	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000197976	ENSG00000145113	.	.	downstream	downstream	mismatches(1)	.	.	.
MET	MET	+/.	+/.	7:116716273	7:116716337	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000105976	ENSG00000105976	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
SFN(3800),GPN2(7876)	SFN(3809),GPN2(7867)	./.	./.	1:26868256	1:26868265	intergenic	intergenic	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ATP6V1C1(10773),MTND1P5(1827)	MT-RNR2	./.	+/.	8:103083824	MT:1699	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
EIF1B-AS1	MT-RNR2	-/.	+/.	3:40252521	MT:1699	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280739	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
INSL6	MT-RNR2	-/.	+/.	9:5158894	MT:1698	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000120210	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
JAK2	MT-RNR2	+/.	+/.	9:5092600	MT:1699	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000096968	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL161713.1(29327),LINC02305(68470)	MT-RNR2	./.	+/.	14:83834967	MT:1698	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RNU7-51P(539285),RNU6ATAC28P(162459)	MT-RNR2	./.	+/.	14:83587925	MT:1699	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MSH3	TFAP4(3308),GLIS2(38378)	+/.	./.	5:80854005	16:4276383	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GLI3	OBI1-AS1	-/.	+/.	7:42037806	13:77929420	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000106571	ENSG00000234377	.	.	upstream	downstream	mismatches(1)	.	.	.
HECW1	HECW1	+/.	+/.	7:43336125	7:43336202	intron	intron	duplication/ITD	0	0	0	25	20	low	.	.	.	.	.	ENSG00000002746	ENSG00000002746	.	.	upstream	downstream	low_entropy(2)	.	.	.
AP001823.1(3430),ELMOD1(758)	AP001823.1(3443),ELMOD1(745)	./.	./.	11:107590333	11:107590346	intergenic	intergenic	duplication/ITD	0	0	0	1909	1408	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
COMETT	COMETT	-/.	-/.	7:116638077	7:116638086	intron	intron	duplication/ITD	0	0	0	63	62	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
Y_RNA(20671),AC016910.1(19041)	FP236383.3	./.	+/.	2:143918032	21:8443204	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(20671),AC016910.1(19041)	FP236383.3	./.	+/.	2:143918032	21:8398975	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
ALDH1A1	AC006504.5	-/-	+/+	9:72900678	19:27961840	3'UTR	intron	translocation	0	0	0	1	4	low	.	.	Aldehyde_dehydrogenase_family(100%)|	.	.	ENSG00000165092	ENSG00000267575	.	.	upstream	upstream	mismatches(1)	.	.	.
Y_RNA(20671),AC016910.1(19041)	FP671120.4	./.	+/.	2:143918032	21:8215941	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF12	ADAM10	+/.	-/.	15:57216569	15:58611640	intron	exon	duplication/3'-3'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000140262	ENSG00000137845	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479787	10:104479805	intron	intron	duplication/ITD	0	0	0	1798	110	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262582	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
NYAP2	5_8S_rRNA(2090),FP236383.3(121620)	+/.	./.	2:225590921	21:8259023	intron	intergenic	translocation	0	0	0	1	6	low	.	.	.	.	.	ENSG00000144460	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TBX5	AC244102.4	-/.	-/.	12:114405210	X:152646328	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000089225	ENSG00000287394	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012101.1(15057),AC090812.1(16398)	GAPDHP19(80401),BCORP1(46457)	./.	./.	18:75489829	Y:19408974	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TESC	GAPDHP19(80399),BCORP1(46459)	-/.	./.	12:117051410	Y:19408972	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000088992	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392803	1:90392812	intron	intron	duplication/ITD	0	0	0	312	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC093875.1(209857),LINC02511(32323)	MTRNR2L8	./.	-/.	4:136763596	11:10508684	intergenic	5'UTR	translocation	0	0	0	8	8	low	.	.	.	.	.	.	ENSG00000255823	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093875.1(209857),LINC02511(32323)	MT-RNR2	./.	+/.	4:136763596	MT:2175	intergenic	exon	translocation	0	0	0	8	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC093875.1(209857),LINC02511(32323)	DHFR	./.	-/.	4:136763596	5:80650543	intergenic	intron	translocation	0	0	0	8	8	low	.	.	.	.	.	.	ENSG00000228716	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	AC093875.1(209857),LINC02511(32323)	-/.	./.	3:96617731	4:136763596	5'UTR	intergenic	translocation	0	0	0	8	8	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093875.1(209857),LINC02511(32323)	MTRNR2L5	./.	+/.	4:136763596	10:55599444	intergenic	5'UTR	translocation	0	0	0	8	8	low	.	.	.	.	.	.	ENSG00000249860	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093875.1(209857),LINC02511(32323)	ATP6V1C1(11142),MTND1P5(1458)	./.	./.	4:136763596	8:103084193	intergenic	intergenic	translocation	0	0	0	8	1	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093875.1(209859),LINC02511(32321)	AC087482.1	./.	-/.	4:136763598	15:67040910	intergenic	intron	translocation	0	0	0	8	8	low	.	.	.	.	.	.	ENSG00000259347	.	.	upstream	upstream	mismatches(1)	.	.	.
MTMR12	AC068112.1	-/.	+/.	5:32271164	18:68113436	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000150712	ENSG00000264869	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008083.2(38158),PPIAP45(24435)	AL590240.2	./.	+/.	12:47317179	X:55141514	intergenic	intron	translocation	0	0	0	5	6	low	.	.	.	.	.	.	ENSG00000276929	.	.	upstream	upstream	mismatches(1)	.	.	.
THADA	AL590240.2	-/.	+/.	2:43464626	X:55141514	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000115970	ENSG00000276929	.	.	upstream	upstream	mismatches(1)	.	.	.
RP1(43572),AC084834.1(152293)	AL590240.2	./.	+/.	8:54915292	X:55141514	intergenic	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	.	ENSG00000276929	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005059.1	AL590240.2	+/.	+/.	18:5568111	X:55141514	intron	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	ENSG00000264000	ENSG00000276929	.	.	downstream	upstream	mismatches(1)	.	.	.
VAV3	AL590240.2	-/.	+/.	1:107670552	X:55141514	intron	intron	translocation/3'-3'	0	0	0	20	6	low	.	.	.	.	.	ENSG00000134215	ENSG00000276929	.	.	downstream	upstream	mismatches(1)	.	.	.
NRP1	MRPS36P5(24795),LINC02461(76134)	-/.	./.	10:33334708	12:43079181	5'UTR	intergenic	translocation	0	0	0	21	3	low	.	.	.	.	.	ENSG00000099250	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MICG(12227),HLA-G(2044)	ST18	./.	-/.	6:29824923	8:52206581	intergenic	exon	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000147488	.	.	downstream	downstream	mismatches(1)	.	.	.
RPH3AL	UQCC1	-/.	-/.	17:290466	20:35400225	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000181031	ENSG00000101019	.	.	downstream	downstream	mismatches(1)	.	.	.
AL591222.3(147700),AL512635.1(215752)	PCSEAT(77298),LINC00111(18996)	./.	./.	9:20115694	21:41660185	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
THRAP3P2(6696),SLCO3A1(103057)	MYH9	./.	-/.	15:91750651	22:36360029	intergenic	intron	translocation	0	0	0	21	6	low	.	.	.	.	.	.	ENSG00000100345	.	.	upstream	upstream	mismatches	.	.	.
ZCCHC18	ADCY1	+/+	+/+	X:104112526	7:45682481	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Adenylate_and_Guanylate_cyclase_catalytic_domain(52%)	.	.	ENSG00000166707	ENSG00000164742	.	.	downstream	upstream	mismatches(1)	.	.	.
TRBV24OR9-2(7973),TRBV25OR9-2(4579)	FP671120.3(3830),FP671120.7(613)	./.	./.	9:33657587	21:8253979	intergenic	intergenic	translocation	0	1	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	min_support	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749063	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
AIG1	DLG2	+/.	-/.	6:143272831	11:84052131	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146416	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP001458.2	+/.	-/.	10:104396370	11:62653860	intron	intron	translocation/3'-3'	0	0	0	558	36	low	.	.	.	.	.	ENSG00000120051	ENSG00000255432	.	.	upstream	downstream	mismatches	.	.	.
LINC02620	PAXBP1(159),C21orf62-AS1(149)	-/.	./.	10:104479798	21:32771951	intron	intergenic	translocation	0	0	0	1798	466	low	.	.	.	.	.	ENSG00000225768	.	.	.	upstream	downstream	low_entropy	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	STAG1	./.	-/.	3:95431526	3:136752153	intergenic	intron	deletion	0	0	0	45	0	low	.	.	.	.	.	.	ENSG00000118007	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	NANOGP1(7193),SLC2A3(11897)	./.	./.	3:95431526	12:7907333	intergenic	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC020589.1(341743),SEC63P2(179725)	AC020589.1(341795),SEC63P2(179673)	./.	./.	4:35308087	4:35308139	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TSHZ2	TSHZ2	+/.	+/.	20:53008976	20:53009028	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000182463	ENSG00000182463	.	.	upstream	downstream	low_entropy(2)	.	.	.
TSHZ2	TSHZ2	+/.	+/.	20:53008976	20:53009029	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000182463	ENSG00000182463	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MEGF11	MEGF11	-/.	-/.	15:66150824	15:66150870	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000157890	ENSG00000157890	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479811	10:104479826	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479813	10:104479825	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP003071.5	FP671120.4	+/.	+/.	11:69104798	21:8214793	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000287725	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
CTD-2297D10.2	FP236383.3	-/.	+/.	5:5133201	21:8397815	exon	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000250579	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
RAPGEF1	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	9:131607575	21:8259010	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000107263	.	.	.	upstream	upstream	mismatches	.	.	.
RAPGEF1	FP236383.3	-/.	+/.	9:131607575	21:8442045	intron	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000107263	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
RAPGEF1	FP671120.4	-/.	+/.	9:131607575	21:8214781	intron	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000107263	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
RAPGEF1	FP236383.3	-/.	+/.	9:131607575	21:8397815	intron	intron	translocation	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000107263	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
PTBP1	5_8S_rRNA(2077),FP236383.3(121633)	+/.	./.	19:803135	21:8259010	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000011304	.	.	.	upstream	upstream	mismatches	.	.	.
LINC02549	TRBV24OR9-2(9134),TRBV25OR9-2(3418)	-/.	./.	6:68230113	9:33658748	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226497	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MSH3	CCDC7	+/.	+/.	5:80854005	10:32474340	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000216937	.	.	downstream	downstream	mismatches(1)	.	.	.
PTBP1	FP236383.3	+/.	+/.	19:803135	21:8442045	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000011304	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
AC104777.1	AC069288.1	-/.	-/.	2:150617554	7:1917759	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000286192	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093875.1(209856),LINC02511(32324)	ITGBL1	./.	+/.	4:136763595	13:101670179	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000198542	.	.	upstream	downstream	mismatches(1)	.	.	.
PTBP1	FP671120.4	+/.	+/.	19:803135	21:8214781	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000011304	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
CTD-2297D10.2	FP236383.3	-/.	+/.	5:5133201	21:8442045	exon	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000250579	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
PSMD14P1(29932),AC064859.1(57519)	ST18	./.	-/.	2:123793003	8:52302696	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000147488	.	.	downstream	downstream	mismatches(1)	.	.	.
PSMD14P1(29931),AC064859.1(57520)	AC097654.1	./.	-/.	2:123793002	4:32012522	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000286212	.	.	downstream	upstream	mismatches(1)	.	.	.
PSMD14P1(29931),AC064859.1(57520)	LINC02506	./.	+/.	2:123793002	4:32012522	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000251129	.	.	downstream	upstream	mismatches(1)	.	.	.
PSMD14P1(29932),AC064859.1(57519)	RAB2A	./.	+/.	2:123793003	8:60532009	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104388	.	.	downstream	upstream	mismatches(1)	.	.	.
APC2	FP671120.4	+/+	+/+	19:1468505	21:8214782	CDS	intron	translocation	0	0	0	4	5263	low	.	.	APC_repeat(100%),Adenomatous_polyposis_coli_(APC)_repeat(100%),Adenomatous_polyposis_coli_tumour_suppressor_protein(100%),Armadillo-associated_region_on_APC(100%),Armadillo/beta-catenin-like_repeat(100%),Coiled-coil_N-terminus_of_APC__dimerisation_domain(100%),SAMP_Motif(100%)|	.	.	ENSG00000115266	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
AC097654.1	SLC15A4	-/.	-/.	4:32012522	12:128816258	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286212	ENSG00000139370	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02377	RAB2A	+/.	+/.	4:131583915	8:60532010	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000250102	ENSG00000104388	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097654.1	AC104383.1	-/.	-/.	4:32012522	11:11803235	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000286212	ENSG00000286959	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02506	AC104383.1	+/.	-/.	4:32012522	11:11803235	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000251129	ENSG00000286959	.	.	upstream	downstream	mismatches(1)	.	.	.
AC097654.1	RN7SKP104(56767),TAC1(76057)	-/.	./.	4:32012522	7:97656027	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286212	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UGT2A1	POLK	-/.	+/.	4:69642550	5:75576432	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000173610	ENSG00000122008	.	.	downstream	upstream	mismatches(1)	.	.	.
SMARCAL1	SLC35F3	+/+	+/-	2:216451038	1:234153802	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|	.	.	ENSG00000138375	ENSG00000183780	.	.	downstream	downstream	mismatches(1)	.	.	.
AC063938.1(29371),RNU6-461P(51707)	UGT2A1	./.	-/.	3:102703357	4:69642550	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000173610	.	.	upstream	downstream	mismatches(1)	.	.	.
UGT2A1	AL161757.4	-/.	-/.	4:69642548	14:56844325	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000173610	ENSG00000258776	.	.	downstream	downstream	mismatches(1)	.	.	.
UGT2A1	OTX2-AS1	-/.	+/.	4:69642548	14:56844325	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000173610	ENSG00000248550	.	.	downstream	downstream	mismatches(1)	.	.	.
SNIP1	UGT2A1	-/.	-/.	1:37553624	4:69642547	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000163877	ENSG00000173610	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP54	AL161757.4	+/.	-/.	12:96563824	14:56844325	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000188596	ENSG00000258776	.	.	downstream	downstream	mismatches(1)	.	.	.
POLK	PTPRD	+/.	-/.	5:75576432	9:8698334	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000122008	ENSG00000153707	.	.	upstream	downstream	mismatches(1)	.	.	.
XKR4(16091),TMEM68(138279)	PTPRD	./.	-/.	8:55558145	9:8698334	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000153707	.	.	upstream	downstream	mismatches(1)	.	.	.
AC063938.1(29371),RNU6-461P(51707)	PTPRD	./.	-/.	3:102703357	9:8698334	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000153707	.	.	upstream	downstream	mismatches(1)	.	.	.
PTPRD	AC006197.2(36561),AC023513.1(9045)	-/.	./.	9:8698334	12:42060890	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000153707	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL009177.1	RAPGEF5(55096),STEAP1B(7194)	+/.	./.	6:14487262	7:22412250	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000286277	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PTPRD	AL161757.4	-/.	-/.	9:8698332	14:56844325	intron	intron	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000153707	ENSG00000258776	.	.	downstream	downstream	mismatches(1)	.	.	.
CROCC2(5262),SNED1(45)	LIN52(32938),VSX2(5276)	./.	./.	2:240998573	14:74234173	intergenic	intergenic	translocation	0	0	0	10	36	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214790	21:8442056	intron	intron	deletion/read-through	0	0	0	293	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
5_8S_rRNA(2086),FP236383.3(121624)	FP236383.3	./.	+/.	21:8259019	21:8442056	intergenic	intron	deletion/read-through	0	0	0	10	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC025442.2(1103),SREK1(44931)	AC090816.1(3059),RNA5SP261(48305)	./.	./.	5:66095040	8:31549794	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214790	21:8397826	intron	intron	deletion/read-through	0	0	0	293	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC000120.2	CABIN1	-/.	+/.	7:92135196	22:24067426	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285772	ENSG00000099991	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	21:8214790	21:8259021	intron	intergenic	deletion/read-through	0	0	0	293	6	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
FXNP1(22669),NRXN3(87426)	FXNP1(22768),NRXN3(87327)	./.	./.	14:78082947	14:78083046	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22764),NRXN3(87331)	./.	./.	14:78082946	14:78083042	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FXNP1(22671),NRXN3(87424)	FXNP1(22770),NRXN3(87325)	./.	./.	14:78082949	14:78083048	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL160271.2(31206),MED27(734)	DCC	./.	+/.	9:131852194	18:52708726	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000187323	.	.	upstream	upstream	mismatches(1)	.	.	.
AL136305.1	PRIM2	-/.	+/.	6:17278160	6:57622959	intron	intron	inversion	0	0	0	3	0	low	.	.	.	.	.	ENSG00000287559	ENSG00000146143	.	.	upstream	upstream	mismatches(1)	.	.	.
BMP10(48989),GKN3P(862)	PRIM2	./.	+/.	2:68920386	6:57622959	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000146143	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8442769	21:8444191	intron	intron	inversion/3'-3'	0	0	0	2	214	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
PRIM2	AL160271.2(31206),MED27(734)	+/.	./.	6:57622959	9:131852194	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146143	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02235	AP003390.1(4496),AP001994.1(77185)	+/.	./.	8:81842436	11:119744119	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
ABBA01000935.2	AL136305.1	-/.	-/.	3:91399945	6:17278160	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000283544	ENSG00000287559	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT18P16(123476),LINC01170(298915)	DCC	./.	+/.	5:123760879	18:52708726	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000187323	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	MTRNR2L1	-/.	+/.	3:96617731	17:22523879	5'UTR	5'UTR	translocation/3'-3'	0	0	0	8	4	low	.	.	.	.	.	ENSG00000269028	ENSG00000256618	.	.	downstream	upstream	mismatches(1)	.	.	.
AL136305.1	DCC	-/.	+/.	6:17278160	18:52708726	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000287559	ENSG00000187323	.	.	upstream	upstream	mismatches(1)	.	.	.
ABBA01000935.2	AL160271.2(31206),MED27(734)	-/.	./.	3:91399945	9:131852194	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283544	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HIVEP3	AC092944.1	-/.	+/.	1:41824835	3:157252490	intron	intron	translocation/3'-3'	0	0	0	6	26	low	.	.	.	.	.	ENSG00000127124	ENSG00000243176	.	.	downstream	upstream	low_entropy	.	.	.
SYNDIG1	FP236383.3	+/.	+/.	20:24618126	21:8394736	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000101463	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SYNDIG1	AP001599.1	+/.	+/.	20:24618364	21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000101463	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	SYNDIG1	+/.	+/.	11:47233105	20:24618361	intron	intron	translocation/5'-5'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000101463	.	.	downstream	downstream	mismatches(1)	.	.	.
SYNDIG1	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	20:24618359	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000101463	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SYNDIG1	FP671120.4	+/.	+/.	20:24618359	21:8211701	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000101463	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
JOSD2	FP236383.3	-/.	+/.	19:50511029	21:8438949	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000161677	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
JOSD2	FP671120.7(393),5_8S_rRNA(874)	-/.	./.	19:50511029	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000161677	.	.	.	upstream	upstream	mismatches(1)	.	.	.
JOSD2	FP671120.4	-/.	+/.	19:50511029	21:8211701	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000161677	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SYNDIG1	FP236383.3	+/.	+/.	20:24618359	21:8394736	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000101463	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
WDR81	FP236383.3	+/.	+/.	17:1724796	21:8394736	5'UTR	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000167716	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021202	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
Metazoa_SRP(49193),PAX2(19401)	FP236383.3	./.	+/.	10:100716202	21:8438949	intergenic	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
Metazoa_SRP(49193),PAX2(19401)	FP236383.3	./.	+/.	10:100716202	21:8394736	intergenic	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC012501.2(18059),DNAJA1P2(150103)	FP236383.3	./.	+/.	2:153611347	21:8438949	intergenic	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC012501.2(18059),DNAJA1P2(150103)	FP671120.4	./.	+/.	2:153611347	21:8211701	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00682	FP236383.3	-/.	+/.	4:41881849	21:8438949	intron	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000245870	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
STEAP2-AS1	IQCH-AS1	-/.	-/.	7:90004455	15:67310424	intron	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	ENSG00000227646	ENSG00000259673	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00682	FP671120.7(393),5_8S_rRNA(874)	-/.	./.	4:41881849	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000245870	.	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00682	FP671120.4	-/.	+/.	4:41881849	21:8211701	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000245870	ENSG00000278996	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00682	FP236383.3	-/.	+/.	4:41881849	21:8394736	intron	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000245870	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
GPANK1	AC074032.1	-/-	+/+	6:31664756	12:50112288	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000204438	ENSG00000272368	.	.	upstream	upstream	mismatches(1)	.	.	.
WDR81	FP236383.3	+/.	+/.	17:1724796	21:8438949	5'UTR	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000167716	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
WDR81	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	17:1724796	21:8255907	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167716	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
KIF5C-AS1	UGT1A10	-/.	+/.	2:148881811	2:233640220	intron	intron	deletion/3'-3'	0	0	0	4	9	low	.	.	.	.	.	ENSG00000231079	ENSG00000242515	.	.	downstream	upstream	mismatches(1)	.	.	.
AC012501.2(18059),DNAJA1P2(150103)	FP236383.3	./.	+/.	2:153611347	21:8394736	intergenic	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	LINC02620	./.	-/.	3:137274346	10:104479906	intergenic	intron	translocation	0	0	0	71	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AL136366.1	EOLA1(29406),MAGEA9B(1737)	+/.	./.	9:14353665	X:149579916	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000225472	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NFIB	EOLA1(29406),MAGEA9B(1737)	-/.	./.	9:14353665	X:149579916	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000147862	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SORL1	KCNQ1	+/+	+/+	11:121608911	11:2577441	exon	intron	duplication	0	0	0	0	0	low	.	.	Fibronectin_type_III_domain(67%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%),Sortilin__neurotensin_receptor_3_(100%),Sortilin__neurotensin_receptor_3__C-terminal(100%)|Ion_channel(53%),Ion_transport_protein(30%),KCNQ_voltage-gated_potassium_channel(100%)	.	.	ENSG00000137642	ENSG00000053918	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNQ1	POU2AF1	+/.	-/.	11:2577441	11:111428007	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000053918	ENSG00000110777	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNQ1	SPINT1(6173),RHOV(7834)	+/.	./.	11:2577441	15:40864380	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000053918	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GALNS	FP236383.3	-/.	+/.	16:88834648	21:8442045	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000141012	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AC015687.1	AC015687.1	+/.	+/.	8:70990734	8:70990749	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000285579	ENSG00000285579	.	.	upstream	downstream	low_entropy(1)	.	.	.
NAA11	DHFR	-/.	-/.	4:79311395	5:80650239	intron	intron	translocation	0	0	0	6	68	low	.	.	.	.	.	ENSG00000156269	ENSG00000228716	.	.	downstream	upstream	mismatches	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479907	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
NOTCH2(12176),RNU6-465P(14019)	U3(104497),GPC1(41723)	./.	./.	1:120112955	2:240393940	intergenic	intergenic	translocation	0	0	0	4	357	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479901	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8392866	21:8397824	intron	intron	inversion/3'-3'	0	0	0	43	1126	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479911	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
PGBD2	AP005262.1	+/.	+/.	1:248906244	18:1762158	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185220	ENSG00000266602	.	.	upstream	upstream	mismatches(1)	.	.	.
TEX41	TEX41	+/.	+/.	2:145113859	2:145113906	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000226674	ENSG00000226674	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC006288.1(46016),LINC01613(364912)	AC012060.1(92676),LINC02248(36443)	./.	./.	9:119570141	15:26358594	intergenic	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC112242.1(11775),AC097375.2(1894)	5_8S_rRNA(2079),FP236383.3(121631)	./.	./.	4:151903038	21:8259012	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
MFSD1	AP000344.1	+/.	+/.	3:158750097	22:23459169	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000118855	ENSG00000227755	.	.	downstream	upstream	mismatches(1)	.	.	.
MBOAT2	LINC00348(85850),RABEPKP1(41943)	-/.	./.	2:8859782	13:71254267	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000143797	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRR(12527),AC025174.1(5740)	TNFAIP3	./.	+/.	5:7918552	6:137873617	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000118503	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LDB2(154),AC106894.1(74443)	LDB2(224),AC106894.1(74373)	./.	./.	4:16898832	4:16898902	intergenic	intergenic	duplication/ITD	0	0	0	9	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(5)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96618106	21:8397434	5'UTR	intron	translocation/3'-3'	0	0	0	75	543	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
LINC02789	DHFR	+/.	-/.	1:199202043	5:80651216	intron	intron	translocation/3'-3'	0	0	0	0	128	low	.	.	.	.	.	ENSG00000231718	ENSG00000228716	.	.	upstream	downstream	duplicates(6),mismatches(1)	.	.	.
AL008633.1	AL008633.1	-/.	-/.	X:128931425	X:128931486	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000225689	ENSG00000225689	.	.	upstream	downstream	low_entropy(1)	.	.	.
TLE4	FP236383.3	+/.	+/.	9:79614984	21:8445489	intron	intron	translocation	0	0	0	3	6	low	.	.	.	.	.	ENSG00000106829	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
PRKAB1	C2CD2	+/+	-/+	12:119672408	21:41948380	CDS	intron	translocation/5'-5'	0	0	0	1	3	low	.	.	Glycogen_recognition_site_of_AMP-activated_protein_kinase(13%)|	.	.	ENSG00000111725	ENSG00000157617	.	.	downstream	upstream	mismatches	.	.	.
CCSER1	AP001858.1(1345),TUBAP7(12337)	+/.	./.	4:91553536	11:63034448	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184305	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SGCZ	FP236383.3	-/.	+/.	8:14216765	21:8434665	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185053	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(1)	.	.	.
AL356131.1(332835),MTRNR2L9(182)	TAFA5	./.	+/.	6:61574146	22:48741205	intergenic	intron	translocation	0	0	0	65	0	low	.	.	.	.	.	.	ENSG00000219438	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RGMB-AS1	DPP9(27833),MIR7-3HG(16525)	-/.	./.	5:98771454	19:4752506	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C6orf201	NXNL1	+/+	-/-	6:4079685	19:17456613	intron	intron	translocation	0	0	0	0	3	low	.	.	|Thioredoxin-like(23%)	.	.	ENSG00000185689	ENSG00000171773	.	.	downstream	downstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	GOLGA7B	./.	+/.	2:218108703	10:97864903	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000155265	.	.	downstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AC080013.1	AC069288.1	+/.	-/.	3:158750097	7:1817390	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000240207	ENSG00000286192	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC10A6	BICC1	-/-	+/-	4:86848790	10:58688003	CDS	intron	translocation/5'-5'	0	0	0	0	87	low	.	.	Sodium_Bile_acid_symporter_family(40%)|	.	.	ENSG00000145283	ENSG00000122870	.	.	upstream	downstream	duplicates(3),homopolymer(2)	.	.	.
AC064799.2	GLP2R	+/.	+/.	15:71338277	17:9862139	intron	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000260586	ENSG00000065325	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC009303.2	ATP11B	+/+	+/-	2:118055017	3:182827616	exon	intron	translocation/5'-5'	0	0	0	24	0	low	.	.	.	.	.	ENSG00000235066	ENSG00000058063	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC02225(171108),LINC02101(37361)	AC044873.1(3524),AC091027.2(108433)	./.	./.	5:58070270	18:78800196	intergenic	intergenic	translocation	0	0	0	0	15	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
DYM	DYM	-/.	-/.	18:49317555	18:49317566	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000141627	ENSG00000141627	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC104109.4	PRKCA	-/.	+/.	5:134225648	17:66712001	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273345	ENSG00000154229	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8252767	21:8397818	intergenic	intron	deletion/read-through	0	0	0	9	6042	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	ARID5B	-/.	+/.	5:80650933	10:61903188	intron	intron	translocation	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000150347	.	.	downstream	downstream	mismatches(1)	.	.	.
SRP14P4(39612),GM2AP2(7310)	FP236383.3	./.	+/.	1:171384919	21:8441664	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AF279873.3	CCSER2	+/.	+/.	8:33792866	10:84328995	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000253642	ENSG00000107771	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916400	12:94072556	intron	intergenic	translocation	0	0	0	55	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
5_8S_rRNA(2095),FP236383.3(121615)	COL18A1	./.	+/.	21:8259028	21:45478840	intergenic	intron	inversion	0	0	0	6	5	low	.	.	.	.	.	.	ENSG00000182871	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	SMIM15P1(74040),PINCR(102558)	+/.	./.	21:8216865	X:43074436	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP427(5143),AC007342.2(19305)	FP671120.4	./.	+/.	16:53342714	21:8216865	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104123.1	UAP1L1(153),MAN1B1-DT(254)	+/.	./.	5:96361268	9:137084692	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	.	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
TATDN2	VWA8	+/.	-/.	3:10249513	13:41961032	CDS	5'UTR	translocation/3'-3'	1	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000102763	.	.	upstream	downstream	min_support	.	.	.
LINC01524	LINC01524	+/.	+/.	20:52204561	20:52204616	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000234948	ENSG00000234948	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
GAU1	GAU1	-/.	-/.	12:4702122	12:4702202	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255474	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
LINC01731	LINC01731	-/.	-/.	1:148280096	1:148280109	intron	intron	duplication/ITD	0	0	0	21	48	low	.	.	.	.	.	ENSG00000234283	ENSG00000234283	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
GAU1	AC005833.1	-/.	+/.	12:4702122	12:4702202	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255639	.	.	upstream	downstream	low_entropy(1)	.	.	.
IFT46	MT-RNR1	-/.	+/.	11:118566325	MT:657	intron	exon	translocation/3'-3'	0	0	0	9	.	low	.	.	.	.	.	ENSG00000118096	ENSG00000211459	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CNTFR(1377),RPP25L(18969)	CACNA1B	./.	+/.	9:34591517	9:137987196	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000148408	.	.	downstream	downstream	mismatches(1)	.	.	.
AC008115.2	SBNO2	+/.	-/.	12:12676727	19:1108540	intron	CDS	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000257004	ENSG00000064932	.	.	downstream	downstream	mismatches(1)	.	.	.
AC105252.1(292284),AC079380.1(3754)	BRD1(231),Z98885.2(4706)	./.	./.	4:133867492	22:49827743	intergenic	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LDB2	LINC02629(156849),PARD3(34907)	-/.	./.	4:16803261	10:34074653	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000169744	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TATDN2	SBNO2	+/.	-/.	3:10249513	19:1108539	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000064932	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479812	10:104479909	intron	intron	duplication/ITD	0	0	0	2200	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PRDM16	FP671120.4	+/.	+/.	1:3423343	21:8214805	intron	intron	translocation	0	0	0	0	6035	low	.	.	.	.	.	ENSG00000142611	ENSG00000278996	.	.	upstream	downstream	duplicates(1),homopolymer(2)	.	.	.
SYT2	AL358053.1(206662),AL591644.1(221019)	-/.	./.	1:202691724	9:1756765	intron	intergenic	translocation	0	0	0	22	8	low	.	.	.	.	.	ENSG00000143858	.	.	.	upstream	upstream	mismatches	.	.	.
CYP2W1(2387),C7orf50(4959)	MT-RNR2	./.	+/.	7:992027	MT:2212	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DIRC3	AC010230.1(271289),AC094104.2(91574)	-/.	./.	2:217597800	5:114939699	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231672	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262596	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
KLHL29	AL163974.1(22793),LINC00523(45131)	+/.	./.	2:23548871	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000119771	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ENG(10495),AK1(1333)	AL163974.1(22793),LINC00523(45131)	./.	./.	9:127865153	14:100612119	intergenic	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC117464.1(570117),LINC00971(16869)	AL163974.1(22793),LINC00523(45131)	./.	./.	3:84621536	14:100612119	intergenic	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL358053.1(422456),AL591644.1(5225)	AL163974.1(22793),LINC00523(45131)	./.	./.	9:1972559	14:100612119	intergenic	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL512634.1(10299),CHCHD2P9(182691)	AP001021.1	./.	+/.	9:79208613	18:5979009	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000264449	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
CTNND2	AC004946.1(2692),KCND2(43270)	-/.	./.	5:11595852	7:120229905	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169862	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AGRN	EPB41L1	+/.	+/.	1:1041820	20:36154970	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000088367	.	.	downstream	upstream	mismatches(1)	.	.	.
AC233701.1(7210),MIR4739(96045)	AC233701.1(7225),MIR4739(96030)	./.	./.	17:79611131	17:79611146	intergenic	intergenic	duplication/ITD	0	0	0	9	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
DNAH14	AP003390.1(4496),AP001994.1(77185)	+/.	./.	1:225078862	11:119744119	intron	intergenic	translocation	0	0	0	171	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
IGKV1OR2-11(15911),AC092683.1(13886)	5_8S_rRNA(2083),FP236383.3(121627)	./.	./.	2:97402279	21:8259016	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01331(79560),ENC1(10870)	FP671120.4	./.	+/.	5:74616536	21:8214796	intergenic	intron	translocation	0	0	0	10	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
TAB2(11972),ZC3H12D(23210)	TAB2(11987),ZC3H12D(23195)	./.	./.	6:149423585	6:149423600	intergenic	intergenic	duplication/ITD	0	0	0	86	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(61),low_entropy(10)	.	.	.
LINC02612	AL139243.1	+/.	+/.	2:150617554	10:98446742	intron	exon	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000287261	.	.	downstream	upstream	mismatches(1)	.	.	.
LARS2-AS1	PCNT	-/.	+/.	3:45493462	21:46422072	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000232455	ENSG00000160299	.	.	downstream	upstream	mismatches(1)	.	.	.
AL589986.2	NACC2	+/.	-/.	1:152206894	9:136019086	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236427	ENSG00000148411	.	.	upstream	upstream	mismatches(1)	.	.	.
EDAR	ARHGAP26	-/-	+/+	2:108910982	5:143014676	CDS	intron	translocation	0	0	0	0	0	low	.	.	|RhoGAP_domain(100%),Variant_SH3_domain(100%)	.	.	ENSG00000135960	ENSG00000145819	.	.	upstream	upstream	mismatches(1)	.	.	.
HSD52	ANP32B	-/.	+/.	1:59216836	9:97983496	intron	5'UTR	translocation	0	0	0	2	8	low	.	.	.	.	.	ENSG00000224609	ENSG00000136938	.	.	upstream	upstream	mismatches(1)	.	.	.
EDAR	TCF20	-/-	-/+	2:108910980	22:42283478	CDS	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000135960	ENSG00000100207	.	.	upstream	upstream	mismatches(1)	.	.	.
H3-5(8699),RNU6-1069P(1961)	AC004687.2	./.	-/.	12:31800997	17:58385558	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285897	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
HAO2(20024),HSD3B2(777)	DDB2	./.	+/.	1:119414154	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262468	6:42262483	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(3),low_entropy(9),merge_adjacent	.	.	.
ZNF592(4827),ALPK3(6084)	TEX11	./.	-/.	15:84811272	X:70632775	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000120498	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RUFY4(18124),CXCR2(16584)	ENPP7(5260),CBX2(30669)	./.	./.	2:218108705	17:79747479	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
VPS51	FGD5	+/+	+/+	11:65096265	3:14811583	CDS	intron	translocation	0	0	0	4	0	low	.	.	|FYVE_zinc_finger(100%),PH_domain(100%),RhoGEF_domain(100%)	.	.	ENSG00000149823	ENSG00000154783	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNU6-138P(180202),KCNH8(13259)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	3:19135251	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRR(12525),AC025174.1(5742)	AL138720.1(7179),AL050335.1(5597)	./.	./.	5:7918550	6:15097349	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MRC2	INSRR	+/+	-/+	17:62689981	1:156849597	CDS	intron	translocation/5'-5'	0	0	0	9	4	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	ENSG00000027644	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01320	FP236383.3	+/.	+/.	2:33767498	21:8441663	intron	intron	translocation	0	0	0	72	0	low	.	.	.	.	.	ENSG00000228262	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
PRMT8(960),CRACR2A(11700)	CDH8	./.	-/.	12:3594933	16:61831043	intergenic	intron	translocation	0	0	0	0	57	low	.	.	.	.	.	.	ENSG00000150394	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRR(12525),AC025174.1(5742)	MTMR12	./.	-/.	5:7918550	5:32271163	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150712	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC128709.3(26250),LINC02012(11907)	LINC00271	./.	+/.	3:197493355	6:135653248	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000231028	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683468	15:81683477	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749061	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
GAPDHP36(89380),RALBP1P1(20619)	MTRR(12528),AC025174.1(5739)	./.	./.	3:180302488	5:7918553	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479915	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
MTRR(12527),AC025174.1(5740)	AC090017.1(164865),DUX4L52(202265)	./.	./.	5:7918552	12:61397802	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GPR39	FP236383.3	+/.	+/.	2:132557878	21:8442204	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LRP1B	5_8S_rRNA(2099),FP236383.3(121611)	-/.	./.	2:141137947	21:8259032	intron	intergenic	translocation	0	0	0	8	6	low	.	.	.	.	.	ENSG00000168702	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GAPDHP36(89380),RALBP1P1(20619)	PCA3	./.	+/.	3:180302488	9:76808400	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000225937	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PCA3	AC090017.1(164865),DUX4L52(202265)	+/.	./.	9:76808399	12:61397802	intron	intergenic	translocation	0	0	0	6	5	low	.	.	.	.	.	ENSG00000225937	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CTNNA2	CTNNA2	+/.	+/.	2:79384377	2:79384434	intron	intron	duplication/ITD	0	0	0	29	29	low	.	.	.	.	.	ENSG00000066032	ENSG00000066032	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ALDH7A1P3(16965),GIMAP4(8306)	PCA3	./.	+/.	7:150559063	9:76808399	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000225937	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CTNNA3	FP236383.3	-/.	+/.	10:67222695	21:8389581	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000183230	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022384.1	RBFOX1	+/.	+/.	3:10249511	16:6603609	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000078328	.	.	upstream	upstream	mismatches(2)	.	.	.
LINC00271	PCA3	+/.	+/.	6:135653248	9:76808399	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000231028	ENSG00000225937	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LPP	DHFR	+/.	-/.	3:188403065	5:80651206	intron	intron	translocation/3'-3'	0	0	0	0	128	low	.	.	.	.	.	ENSG00000145012	ENSG00000228716	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR3649(9042),ADIPOR2(19152)	FP671120.4	./.	+/.	12:1669422	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105252.1(10289),AC079380.1(285749)	FP671120.4	./.	+/.	4:133585497	21:8214800	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
PCA3	AL359636.2	+/.	+/.	9:76808399	9:122558261	intron	intron	duplication	0	0	0	6	15	low	.	.	.	.	.	ENSG00000225937	ENSG00000234156	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC093912.1(103817),AC073062.1(102173)	FP236383.3	./.	+/.	2:13435500	21:8397432	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
AC128709.3(26250),LINC02012(11907)	AL359636.2	./.	+/.	3:197493355	9:122558261	intergenic	intron	translocation	0	0	0	4	15	low	.	.	.	.	.	.	ENSG00000234156	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
IGHJ4	IGHG1	-/-	-/-	14:105864215	14:105743070	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	13	26	low	.	.	.	.	.	ENSG00000240041	ENSG00000211896	.	.	upstream	downstream	duplicates(12),multimappers(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683457	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01219	FP236383.3	+/.	+/.	11:1991349	21:8442055	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000232987	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683457	15:81683470	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
SLC16A11	FP236383.3	-/-	+/+	17:7042731	21:8420283	CDS	intron	translocation	0	0	0	0	0	low	.	.	Major_Facilitator_Superfamily(30%)|	.	.	ENSG00000174326	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL158828.1(81091),AL353613.1(62449)	FP236383.3	./.	+/.	9:86569698	21:8397834	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
RUFY4(18122),CXCR2(16586)	FP671120.4	./.	+/.	2:218108703	21:8214799	intergenic	intron	translocation	0	0	0	193	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683456	15:81683469	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
EPC1(15153),RNU6-1244P(607)	DMBT1L1	./.	+/.	10:32393951	10:122824213	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000176584	.	.	upstream	upstream	mismatches(1)	.	.	.
MSH3	AC099524.1	+/.	+/.	5:80854005	16:81755642	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000261218	.	.	downstream	downstream	mismatches(1)	.	.	.
EEF1B2P6(1963),AC093106.1(920)	AC069540.1(9096),RNU6-129P(18769)	./.	./.	7:131664587	10:83745589	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683456	15:81683469	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683456	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ENPEP	RNU6-728P(25111),PLEKHA1(3792)	+/.	./.	4:110376162	10:122370904	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138792	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PAXBP1(76),C21orf62-AS1(232)	PAXBP1(175),C21orf62-AS1(133)	./.	./.	21:32771868	21:32771967	intergenic	intergenic	duplication/ITD	0	0	0	494	122	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PTMAP5	PHC2	+/+	-/-	13:81690090	1:33391814	exon	intron	translocation	0	0	0	2	0	low	.	.	|SAM_domain_(Sterile_alpha_motif)(100%),Unstructured_region_on_Polyhomeotic-like_protein_1_and_2(100%)	.	.	ENSG00000214182	ENSG00000134686	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005242.4(3763),AP005242.2(6977)	AP005242.4(3808),AP005242.2(6932)	./.	./.	18:14996998	18:14997043	intergenic	intergenic	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
GNG12-AS1	AAR2(382),DLGAP4(35036)	+/.	./.	1:68121505	20:36271300	intron	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000232284	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNMB2-AS1	AC117457.1	-/.	+/.	3:178655090	3:178655101	intron	intron	duplication/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000237978	ENSG00000275163	.	.	upstream	downstream	low_entropy(1)	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262580	intron	intron	translocation	0	0	0	144	2136	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
GTPBP3(6421),PLVAP(2298)	GPC3	./.	-/.	19:17349152	X:133661639	intergenic	intron	translocation	0	0	0	11	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
AC117457.1	KCNMB2-AS1	+/.	-/.	3:178655090	3:178655101	intron	intron	duplication/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000275163	ENSG00000237978	.	.	upstream	downstream	low_entropy(1)	.	.	.
MTCYBP36	KCNMA1	-/.	-/.	6:94447030	10:77448113	exon	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000216853	ENSG00000156113	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01608	AC005722.3	-/.	+/.	8:110977288	17:19719666	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	ENSG00000262681	.	.	upstream	upstream	mismatches(1)	.	.	.
AC117457.1	KCNMB2	+/.	+/.	3:178655090	3:178655101	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000275163	ENSG00000197584	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNMB2	KCNMB2	+/.	+/.	3:178655090	3:178655101	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197584	ENSG00000197584	.	.	upstream	downstream	low_entropy(1)	.	.	.
LYARP1(7484),Y_RNA(29656)	TMEM241	./.	-/.	2:82277411	18:23316008	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000134490	.	.	downstream	upstream	mismatches(1)	.	.	.
PHOX2B-AS1(17307),HMGB1P28(728)	NPAS3	./.	+/.	4:41841426	14:33799874	intergenic	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	.	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785684	2:101785783	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
OXGR1(137590),LINC00456(36431)	OXGR1(137601),LINC00456(36420)	./.	./.	13:97132320	13:97132331	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
DIPK1A	FAM110B	-/.	+/.	1:92862797	8:58076460	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154511	ENSG00000169122	.	.	downstream	downstream	mismatches(1)	.	.	.
PALM2AKAP2	NPAS3	+/.	+/.	9:109984139	14:33799876	intron	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	ENSG00000157654	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
ULK4	CRADD	-/.	+/.	3:41888954	12:93846253	intron	intron	translocation	0	0	0	2	24	low	.	.	.	.	.	ENSG00000168038	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
STAG1	NPAS3	-/.	+/.	3:136542969	14:33799874	intron	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	ENSG00000118007	ENSG00000151322	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
NRIP3	CDK14	-/-	+/+	11:9003964	7:90766754	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Protein_kinase_domain(92%)	.	.	ENSG00000175352	ENSG00000058091	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
FP671120.4	CACNA1I	+/.	+/.	21:8214794	22:39592309	intron	intron	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000100346	.	.	upstream	downstream	mismatches(1)	.	.	.
DLG2	RGN(25227),RNU12-2P(14130)	-/.	./.	11:85484188	X:47118541	intron	intergenic	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GRIK3	NPAS3	-/.	+/.	1:36828760	14:33799874	intron	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	ENSG00000163873	ENSG00000151322	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
CDH12	LRRC4B	-/.	-/.	5:22594933	19:50548285	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000154162	ENSG00000131409	.	.	upstream	downstream	duplicates(3),mismatches(2)	.	.	.
LINC01287(16430),PAXBP1P1(19014)	AL162384.1(57259),GTF3AP1(71961)	./.	./.	7:153430415	9:6123973	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ELK2AP(5841),IGHA1(24840)	FP671120.4	./.	+/.	14:105679155	21:8214784	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ARL8B	FP236383.3	+/.	+/.	3:5167935	21:8437518	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000134108	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
C1orf127	LINC01287(16430),PAXBP1P1(19014)	-/.	./.	1:10948701	7:153430415	CDS	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000175262	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT8P18(38619),RNU6-243P(1072)	DEDD2	./.	-/.	3:35255768	19:42217199	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000160570	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
LAMA2	LINC01287(16430),PAXBP1P1(19014)	+/.	./.	6:129263565	7:153430415	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000196569	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117376	10:113117385	intron	intron	duplication/ITD	0	0	0	307	304	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC005229.5	STXBP4	-/.	+/.	7:148605538	17:55007848	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000287636	ENSG00000166263	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521059	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(8)	.	.	.
DOT1L	MT-RNR2	+/+	+/+	19:2220466	MT:2230	exon	exon	translocation	0	0	0	0	.	low	.	.	Histone_methylation_protein_DOT1_(100%)|	.	.	ENSG00000104885	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RUFY4(18122),CXCR2(16586)	Y_RNA(61173),AL450338.1(30025)	./.	./.	2:218108703	6:85838928	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
NFIB	FP671120.4	-/.	+/.	9:14346299	21:8214881	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000147862	ENSG00000278996	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
OR4A44P(111592),AC027369.6(140026)	5_8S_rRNA(2080),FP236383.3(121630)	./.	./.	11:48740085	21:8259013	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGEF26-AS1	MAP3K15	-/-	-/-	3:154121333	X:19478187	exon	intron	translocation	0	0	0	0	9	low	.	.	|ASK_kinase_PH_domain(100%),MAP3K_TRAFs-binding_domain(89%),Protein_kinase_domain(100%)	.	.	ENSG00000243069	ENSG00000180815	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257417	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(24),low_entropy(3)	.	.	.
DYM	DYM	-/.	-/.	18:49317553	18:49317566	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000141627	ENSG00000141627	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
CNTNAP3B	AC104574.2	-/.	-/.	9:41978602	15:61611250	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000154529	ENSG00000259616	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1371286	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	14:77269669	14:77269683	intron	intron	duplication/ITD	0	0	0	9	8	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GGT7	GGT7	-/-	-/-	20:34845114	20:34845128	3'UTR	3'UTR	duplication/ITD	0	0	0	75	61	low	.	.	Gamma-glutamyltranspeptidase(100%)|	.	.	ENSG00000131067	ENSG00000131067	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.5	RNY1P8(102917),AL162376.1(68854)	-/-	./-	21:8437764	13:73330177	exon	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000281181	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	AC092275.1	./.	+/.	1:146273933	16:85260115	intergenic	intron	translocation	0	0	0	9	19	low	.	.	.	.	.	.	ENSG00000287787	.	.	downstream	upstream	mismatches(1)	.	.	.
CNOT1	AC092138.2(85726),AC022164.1(128439)	-/.	./.	16:58553988	16:65732673	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000125107	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NR4A2(37908),GPD2(55034)	AP001599.1	./.	+/.	2:156380256	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH2(12177),RNU6-465P(14018)	GSE1	./.	+/.	1:120112956	16:85260115	intergenic	intron	translocation	0	0	0	4	19	low	.	.	.	.	.	.	ENSG00000131149	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139383.1	REC114	-/.	+/.	13:33517095	15:73559659	intron	intron	translocation/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000230490	ENSG00000183324	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC017087.1(376618),AC018710.1(6863)	FP236383.3	./.	+/.	4:179062574	21:8441656	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC017087.1(376618),AC018710.1(6863)	DLG2	./.	-/.	4:179062574	11:85484190	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
ADGRG7	5_8S_rRNA(1688),FP236383.3(122022)	+/.	./.	3:100673210	21:8258621	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000144820	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC125611.4	FP236383.3	-/.	+/.	12:49319361	21:8397436	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000258334	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SEPTIN8	AC060765.2(687),AC105031.1(16798)	-/.	./.	5:132777039	8:82962613	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000164402	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
DIRC3	AC105252.1(292282),AC079380.1(3756)	-/.	./.	2:217597800	4:133867490	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000231672	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGEF26-AS1	AL390879.1	-/-	+/+	3:154121333	X:137012289	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000243069	ENSG00000234062	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC017087.1(376618),AC018710.1(6863)	FP671120.4	./.	+/.	4:179062574	21:8214398	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092506.1(601475),AL591888.1(170253)	FP671120.4	./.	+/.	1:104828153	21:8214398	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01166	FP236383.3	-/.	+/.	10:132962352	21:8442046	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000232903	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
MIR9-3HG(14344),RHCG(58567)	MIR9-3HG(14355),RHCG(58556)	./.	./.	15:89412831	15:89412842	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SGMS1	FP671120.4	-/.	+/.	10:50624032	21:8214782	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000198964	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
NUP214	ZNF780A	+/.	-/.	9:131197615	19:40090465	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000126883	ENSG00000197782	.	.	upstream	upstream	mismatches(1)	.	.	.
ERI3	EXPH5	-/.	-/.	1:44320096	11:108554921	intron	intron	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000110723	.	.	downstream	upstream	mismatches(2)	.	.	.
GRM8	RAD9A	-/.	+/.	7:126622457	11:67325479	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000179603	ENSG00000172613	.	.	downstream	upstream	mismatches(1)	.	.	.
ERI3	TPRG1(125400),TP63(180685)	-/.	./.	1:44320096	3:189450704	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1(23080),AC108865.1(141167)	C18orf25(51810),RNF165(8007)	./.	./.	4:186749802	18:46318802	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02150	AL163974.1(22793),LINC00523(45131)	-/.	./.	5:16393214	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000248150	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MYT1L(85626),AC018685.2(220888)	DIP2A(27618),S100B(971)	./.	./.	2:2417290	21:46597633	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DUX4L22	PGLYRP1	+/+	-/+	10:133678144	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000277274	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
NDUFC1	RN7SL700P(197406),SUCLA2(89096)	-/.	./.	4:139295700	13:47656640	intron	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	12:105046145	12:105046190	intron	intron	duplication/5'-5'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000151131	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01377(90356),LINC01019(85421)	RAB11FIP4	./.	+/.	5:3271843	17:31437428	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000131242	.	.	upstream	downstream	mismatches(1)	.	.	.
AL512357.2(6022),AL512357.1(75587)	FP671120.4	./.	+/.	14:104300943	21:8213195	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051968	1:161052060	intron	intron	duplication/ITD	0	0	0	66	80	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(3)	.	.	.
RN7SL711P(3954),AC106786.1(12214)	FP236383.3	./.	+/.	5:123075034	21:8442887	intergenic	intron	translocation	0	0	0	4	60	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4498),AP001994.1(77183)	+/.	./.	10:104396370	11:119744121	intron	intergenic	translocation	0	0	0	558	3002	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
EXOSC7	FP236383.3	+/.	+/.	3:44976203	21:8438952	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000075914	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
DHFR	RTN4IP1	-/.	-/.	5:80651216	6:106581377	intron	intron	translocation/3'-3'	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000130347	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
EXOSC7	FP671120.7(396),5_8S_rRNA(871)	+/.	./.	3:44976203	21:8255910	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075914	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
ZNF10	FP236383.3	+/.	+/.	12:133131392	21:8397819	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000256223	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SEMA5B(2022),PDIA5(36398)	SEMA5B(2033),PDIA5(36387)	./.	./.	3:123030627	3:123030638	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
NELFB	ADGRG2(130225),PDHA1(91031)	+/.	./.	9:137267315	X:19252862	CDS	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000188986	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
EXOSC7	DDB2	+/.	+/.	3:44976202	11:47233105	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000075914	ENSG00000134574	.	.	downstream	downstream	homopolymer(1)	.	.	.
STIP1	SULF2	+/.	-/.	11:64186205	20:47757536	5'UTR	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000168439	ENSG00000196562	.	.	upstream	upstream	mismatches(1)	.	.	.
AL353660.1	RASL10B	+/.	+/.	13:74357989	17:35736065	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286330	ENSG00000270885	.	.	upstream	downstream	mismatches(1)	.	.	.
GUSBP7(41359),RNU6-1119P(44359)	DNTT	./.	+/.	5:100109313	10:96333569	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000107447	.	.	downstream	downstream	mismatches(2)	.	.	.
NOC3L	BACH1	-/.	+/.	10:94335830	21:29263475	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000173145	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
AC082651.2(5164),AC082651.3(5463)	ARSB	./.	-/.	2:9752033	5:78831171	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000113273	.	.	downstream	upstream	mismatches(1)	.	.	.
TATDN2	LETM1	+/.	-/.	3:10249513	4:1841519	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC027128.1	LTBP4	-/.	+/.	3:10949457	19:40619533	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000286962	ENSG00000090006	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001885.2	MIR663AHG	-/.	-/.	11:67317231	20:26208398	exon	exon	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000287851	ENSG00000227195	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LETM1	KCNQ3	-/.	-/.	4:1841524	8:132230326	CDS	intron	translocation/3'-3'	0	0	0	32	0	low	.	.	.	.	.	ENSG00000168924	ENSG00000184156	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC245100.1	LTBP4	+/.	+/.	1:148317429	19:40619533	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000224481	ENSG00000090006	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4(935),FP671120.10(6773)	FP671120.7(379),5_8S_rRNA(888)	./.	./.	21:8228581	21:8255893	intergenic	intergenic	inversion	0	0	0	0	143	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ATP8B4	ATP8B4	-/.	-/.	15:50072927	15:50072936	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000104043	ENSG00000104043	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ARSB	OTUD7A	-/.	-/.	5:78831171	15:31498986	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113273	ENSG00000169918	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008269.1	C10orf143	+/.	-/.	2:206862123	10:130103977	intron	intron	translocation/5'-5'	0	0	0	0	49	low	.	.	.	.	.	ENSG00000229321	ENSG00000237489	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
CDH9	ZBTB46	-/.	-/.	5:26926913	20:63747607	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113100	ENSG00000130584	.	.	upstream	downstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	14:77269695	14:77269783	intron	intron	duplication/ITD	0	0	0	14	80	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	low_entropy(1)	.	.	.
U3(136509),NXNP1(203192)	U3(136518),NXNP1(203183)	./.	./.	1:218678408	1:218678417	intergenic	intergenic	duplication/ITD	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LY6E(14621),C8orf31(756)	LY6E(14647),C8orf31(730)	./.	./.	8:143038453	8:143038479	intergenic	intergenic	duplication/ITD	0	0	0	178	41	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC105252.1(10289),AC079380.1(285749)	FP236383.3	./.	+/.	4:133585497	21:8442064	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
AC138123.1	FP236383.3	-/.	+/.	12:93171583	21:8442064	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000257322	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
FP236383.3	RPL14P5(32628),CRLF2(144820)	+/.	./.	21:8397834	X:1042729	intron	intergenic	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
FBXW5	AF127577.4	-/.	-/.	9:136943086	21:14845957	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	ENSG00000235609	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC138123.1	FP236383.3	-/.	+/.	12:93171583	21:8397834	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000257322	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
CSMD1	5_8S_rRNA(2096),FP236383.3(121614)	-/.	./.	8:4575899	21:8259029	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000183117	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	15:33236821	15:33236830	exon	exon	duplication/ITD	0	0	0	14	13	low	.	.	.	.	.	ENSG00000215296	ENSG00000215296	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
OLIG2	AL954722.1(476),PLCXD1(20755)	+/.	./.	21:33027466	X:255567	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000205927	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC026904.2	ZDHHC14	-/-	+/+	8:48551626	6:157398083	exon	intron	translocation	0	0	0	0	0	low	.	.	|DHHC_palmitoyltransferase(100%)	.	.	ENSG00000253688	ENSG00000175048	.	.	upstream	upstream	mismatches(1)	.	.	.
RBFOX1	DEDD2	+/.	-/.	16:6222320	19:42217199	intron	intron	translocation/3'-3'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000078328	ENSG00000160570	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
SIL1	SAMD12	-/.	-/.	5:139105649	8:118554925	intron	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000120725	ENSG00000177570	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
CAPZA3(326154),RPL7P6(23809)	GPM6B	./.	-/.	12:19065342	X:13801017	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000046653	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKCZ	FP236383.3	+/.	+/.	1:2178890	21:8397829	intron	intron	translocation	0	0	0	2	1126	low	.	.	.	.	.	ENSG00000067606	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
H3P28(100180),AL355297.2(11600)	AC023932.1(132580),RNU6-408P(91214)	./.	./.	6:156762617	18:28957406	intergenic	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396370	10:104396386	intron	intron	duplication/ITD	0	0	0	558	544	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DYNLL1	FP236383.3	+/.	+/.	12:120496222	21:8442060	5'UTR	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000088986	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
SIL1	RBFOX1	-/.	+/.	5:139105651	16:6222317	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000120725	ENSG00000078328	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
FP236383.3	AL731768.1(245335),SRIP2(139747)	+/.	./.	21:8397834	X:89227688	intron	intergenic	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	duplicates(2),homopolymer(2)	.	.	.
MTND1P27(583),LRP1B(9355)	AL593844.1	./.	+/.	2:140222068	6:68230113	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000286564	.	.	downstream	upstream	mismatches(1)	.	.	.
RCC2	LINC00486	-/.	+/.	1:17439137	2:32916550	intron	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
HFM1	TLE4	-/.	+/.	1:91387407	9:79614984	intron	intron	translocation	0	0	0	6	3	low	.	.	.	.	.	ENSG00000162669	ENSG00000106829	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
SERTAD2(537),RN7SL341P(65836)	SIM2	./.	+/.	2:64751542	21:36720283	intergenic	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000159263	.	.	downstream	upstream	mismatches(1)	.	.	.
GNB1	LINC00866	-/.	-/.	1:1825466	10:97837203	5'UTR	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000078369	ENSG00000227356	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396454	8:22396471	intron	intron	duplication/ITD	0	0	0	38	38	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	low_entropy(1)	.	.	.
MFF-DT	LAMA3	-/-	+/+	2:227268528	18:23756906	exon	intron	translocation	0	0	0	0	0	low	.	.	|Laminin_B_(Domain_IV)(100%),Laminin_Domain_I(100%),Laminin_Domain_II(100%),Laminin_EGF_domain(100%),Laminin_G_domain(100%)	.	.	ENSG00000236432	ENSG00000053747	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AL162151.3	GPR39	+/+	+/-	14:98999716	2:132557875	exon	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000287991	ENSG00000183840	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4369),AP001994.1(77312)	AP003390.1(4379),AP001994.1(77302)	./.	./.	11:119743992	11:119744002	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC01320	OTX2P2(39023),PABPC1P2(70370)	+/.	./.	2:33767515	2:146517136	intron	intergenic	deletion	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228262	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC010132.1(7568),AC010132.4(49266)	AC010132.1(7623),AC010132.4(49211)	./.	./.	7:42852006	7:42852061	intergenic	intergenic	duplication/ITD	0	0	0	8	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NOTCH4	RUFY4(18122),CXCR2(16586)	-/-	./-	6:32195778	2:218108703	CDS	intergenic	translocation	0	0	0	1	193	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Calcium-binding_EGF_domain(100%),EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),LNR_domain(100%),NOTCH_protein(100%)|	.	.	ENSG00000204301	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
DLG2	FP671120.4	-/.	+/.	11:85484195	21:8211705	intron	intron	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000278996	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
NXF2(27555),AC235565.2(6118)	NXF2(27653),AC235565.2(6020)	./.	./.	X:102354277	X:102354375	intergenic	intergenic	duplication/ITD	0	0	0	0	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC22A23(73043),AL033523.1(55008)	FP236383.3	./.	+/.	6:3530093	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SKI	ISCA1P6(7623),AC012451.1(53691)	+/.	./.	1:2229116	2:128526800	CDS	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000157933	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF503-AS1	AP001599.1	+/.	+/.	10:75249178	21:26914103	intron	intron	translocation	0	0	0	3	167	low	.	.	.	.	.	ENSG00000226051	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
FLG-AS1	TENM2	+/.	+/.	1:152381055	5:167360943	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000237975	ENSG00000145934	.	.	upstream	upstream	mismatches(1)	.	.	.
C7orf33	STXBP4	+/.	+/.	7:148605538	17:55007848	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000170279	ENSG00000166263	.	.	upstream	upstream	mismatches(1)	.	.	.
MRC2	LINC00602(66379),GAPDHP72(2511)	+/+	./-	17:62689983	6:166055994	CDS	intergenic	translocation	0	0	0	9	1	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ISCA1P2(11035),LINC02814(33488)	IQSEC3	./.	+/.	1:229053626	12:105036	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000120645	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC4A10	HCN4(13757),REC114(60449)	+/.	./.	2:161899878	15:73382715	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000144290	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	SPIN3	-/.	-/.	11:81929494	X:56931247	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000245832	ENSG00000204271	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02609	HMCN1	-/.	+/.	1:90815058	1:186010335	intron	intron	inversion	0	0	0	0	7	low	.	.	.	.	.	ENSG00000233593	ENSG00000143341	.	.	downstream	downstream	mismatches(1)	.	.	.
NRIP3	ERN2	-/-	-/-	11:9003964	16:23702060	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Protein_kinase_domain(100%),Ribonuclease_2-5A(100%)	.	.	ENSG00000175352	ENSG00000134398	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRR(12528),AC025174.1(5739)	LINC02745	./.	-/.	5:7918553	11:42029389	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000255300	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
C16orf95	RTKN2	-/-	-/+	16:87317152	10:62268352	CDS	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000260456	ENSG00000182010	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262592	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
TMA16	AC022826.2	+/.	-/.	4:163516436	8:73820119	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000198498	ENSG00000258677	.	.	downstream	downstream	mismatches(1)	.	.	.
C16orf95	RUFY4(18120),CXCR2(16588)	-/-	./-	16:87317152	2:218108701	CDS	intergenic	translocation	0	0	0	0	193	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	downstream	duplicates(3),mismatches(2)	.	.	.
LYPD6B(6811),FAM8A3P(98520)	EYA2	./.	+/.	2:149222073	20:47029375	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000064655	.	.	upstream	downstream	mismatches(1)	.	.	.
C16orf95	ERN2	-/-	-/-	16:87317150	16:23702061	CDS	intron	deletion	0	0	0	0	8	low	.	.	|Protein_kinase_domain(100%),Ribonuclease_2-5A(100%)	.	.	ENSG00000260456	ENSG00000134398	.	.	upstream	downstream	mismatches(2)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22755),NRXN3(87340)	./.	./.	14:78082946	14:78083033	intergenic	intergenic	duplication/ITD	0	0	0	336	401	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNF38	IQCH-AS1	-/.	-/.	9:36446003	15:67310424	intron	intron	translocation/5'-5'	0	0	0	0	40	low	.	.	.	.	.	ENSG00000137075	ENSG00000259673	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNRF2P1	HDAC8	+/.	-/.	7:32749930	X:72350912	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000237004	ENSG00000147099	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01102	LRRC20	+/.	-/.	2:104481560	10:70322164	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235597	ENSG00000172731	.	.	downstream	upstream	mismatches(1)	.	.	.
AC026202.1(306313),AC087857.1(399768)	BACH1	./.	+/.	3:5563074	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
POLE	STEAP2-AS1	-/-	-/+	12:132650318	7:89935172	exon	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	ENSG00000227646	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
COL18A1	DEAF1	+/+	-/+	21:45506645	11:680611	exon	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	Collagen_triple_helix_repeat_(20_copies)(100%),Collagenase_NC10_and_Endostatin(14%),Domain_of_Unknown_Function_(DUF959)_(100%),Fz_domain(100%)|	.	.	ENSG00000182871	ENSG00000177030	.	.	downstream	upstream	mismatches(1)	.	.	.
MAML3	NRP1	-/.	-/.	4:140084929	10:33334709	intron	5'UTR	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000196782	ENSG00000099250	.	.	upstream	downstream	mismatches(1)	.	.	.
BRD7	LINC00189	-/-	+/-	16:50318705	21:29263475	3'UTR	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	Bromodomain(100%),Domain_of_unknown_function_(DUF3512)(100%)|	.	.	ENSG00000166164	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC25A12	AC093627.22	-/.	-/.	2:171912427	7:117610	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115840	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
PBX3	BACH1	+/.	+/.	9:125886622	21:29263475	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000167081	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
AC105252.1(292285),AC079380.1(3753)	ALG13	./.	+/.	4:133867493	X:111681864	intergenic	intron	translocation	0	0	0	11	10	low	.	.	.	.	.	.	ENSG00000101901	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AGRN	SLIT1	+/.	-/.	1:1041773	10:97043517	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000187122	.	.	downstream	upstream	mismatches(1)	.	.	.
PPFIBP2	BACH1	+/.	+/.	11:7554236	21:29263475	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000166387	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
CDK12	PCAT14(10848),AP000345.1(8419)	+/.	./.	17:39462673	22:23558645	CDS	intergenic	translocation	0	0	0	0	68	low	.	.	.	.	.	ENSG00000167258	.	.	.	upstream	upstream	low_entropy(1)	.	.	.
AL391597.1(30817),CR2(7177)	BACH1	./.	+/.	1:207447053	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02609	SMAD3	-/.	+/.	1:90839715	15:67126777	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000233593	ENSG00000166949	.	.	upstream	upstream	mismatches(1)	.	.	.
PPFIBP2	LINC00189	+/.	+/.	11:7554236	21:29263475	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000166387	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
KIAA0825	HYDIN	-/.	-/.	5:94395445	16:71158143	intron	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	ENSG00000185261	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL162726.3(128523),RASEF(70873)	BACH1	./.	+/.	9:82908717	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNRF2P2	AL133500.1	-/.	-/.	7:29663817	X:72350912	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000225264	ENSG00000285547	.	.	downstream	downstream	mismatches(1)	.	.	.
MIPEPP2(31036),AL583825.1(32531)	BACH1	./.	+/.	1:238810236	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
COL5A1	HBB	+/.	-/.	9:134829851	11:5225537	intron	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000130635	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC074131.1(42657),LINC02161(68513)	BACH1	./.	+/.	5:89512696	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262468	6:42262479	intron	intron	duplication/ITD	0	0	0	2363	14	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ACOXL	LINC00189	+/.	+/.	2:110884840	21:29263475	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000153093	ENSG00000215533	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396544	8:22396554	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NGB	NGB	-/.	-/.	14:77269691	14:77269789	intron	intron	duplication/ITD	0	0	0	14	80	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC079949.3	STXBP6	+/.	-/.	12:127165978	14:24854249	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286016	ENSG00000168952	.	.	downstream	downstream	mismatches(1)	.	.	.
MTHFD2L	CDC42SE2	+/.	+/.	4:74295913	5:131263955	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163738	ENSG00000158985	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022826.2	TSHZ3	-/.	-/.	8:73820119	19:31189090	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000121297	.	.	downstream	downstream	mismatches(2)	.	.	.
DCHS2	KRT8P27(3759),GRPEL2P2(69546)	-/.	./.	4:154351661	X:64628332	intron	intergenic	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197410	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216052	21:8394735	intron	intron	deletion/read-through	0	0	0	0	154	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262470	6:42262481	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
PTPN2	PTPN2	-/.	-/.	18:12870463	18:12870476	intron	intron	duplication/ITD	0	0	0	9	0	low	.	.	.	.	.	ENSG00000175354	ENSG00000175354	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
AP003390.1(4499),AP001994.1(77182)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744122	15:44288393	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates	.	.	.
FMN2	LAMA3	+/.	+/.	1:240200874	18:23756906	intron	intron	translocation	0	0	0	49	0	low	.	.	.	.	.	ENSG00000155816	ENSG00000053747	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC004852.2(134345),GAPDHP68(290776)	MN1(31686),PITPNB(18227)	./.	./.	7:9324202	22:27833442	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM41A	FP671120.4	-/.	+/.	3:185498083	21:8211702	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163900	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
RN7SL547P(135273),AL031679.1(62674)	FP236383.3	./.	+/.	20:7769124	21:8444807	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MFF-DT	TBXT	-/-	-/+	2:227268529	6:166166388	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236432	ENSG00000164458	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC022335.1	FP671120.4	+/.	+/.	12:21146487	21:8218218	intron	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	ENSG00000257062	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC069545.1(570622),ZWINT(39697)	FP671120.4	./.	+/.	10:56317530	21:8214800	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
C10orf143	LAMA3	-/.	+/.	10:130103977	18:23756906	intron	intron	translocation	0	0	0	49	0	low	.	.	.	.	.	ENSG00000237489	ENSG00000053747	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683457	15:81683470	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
NOTCH2	AC068473.3	-/.	+/.	1:120001338	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134250	ENSG00000267287	.	.	downstream	upstream	mismatches(1)	.	.	.
TBXT	C10orf143	-/.	-/.	6:166166388	10:130103978	intron	intron	translocation/5'-5'	0	0	0	0	49	low	.	.	.	.	.	ENSG00000164458	ENSG00000237489	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AGRN	LINC02062	+/.	+/.	1:1041726	5:98929379	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000248489	.	.	downstream	upstream	mismatches(1)	.	.	.
AC006458.1(129546),AGMO(2120)	AC006458.1(129607),AGMO(2059)	./.	./.	7:15198197	7:15198258	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SEMA5B(2026),PDIA5(36394)	SEMA5B(2035),PDIA5(36385)	./.	./.	3:123030631	3:123030640	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(46),low_entropy(6)	.	.	.
AC012060.1(92677),LINC02248(36442)	ANKRD34C-AS1	./.	-/.	15:26358595	15:79162042	intergenic	intron	inversion	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000259234	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KIAA2012	AC124290.1	+/.	+/.	2:202083777	8:35870181	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000253452	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8415562	21:8438935	intron	intron	inversion/3'-3'	0	0	0	0	159	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
RNU6-1059P(140588),RNU6-34P(142945)	PAPLN	./.	+/.	4:96009352	14:73241013	intergenic	intron	translocation	0	0	0	27	0	low	.	.	.	.	.	.	ENSG00000100767	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211687	21:8415562	intron	intron	inversion/3'-3'	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	FP236383.11(1898),FP236383.6(558)	+/.	./.	21:8211687	21:8464696	intron	intergenic	inversion	0	0	0	136	3	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC02620	FP236383.3	-/.	+/.	10:104479906	21:8414018	intron	intron	translocation/3'-3'	0	0	0	1761	63	low	.	.	.	.	.	ENSG00000225768	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP236383.3	./.	+/.	21:8255893	21:8420287	intergenic	intron	inversion	0	0	0	143	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC097480.2(49410),RN7SL101P(60943)	AC008837.2(60704),CRLF3P2(292294)	./.	./.	4:28650255	5:99656001	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
FP671120.4	FP236383.11(2065),FP236383.6(391)	+/.	./.	21:8211687	21:8464863	intron	intergenic	inversion	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC104109.3	AC093627.22	-/.	-/.	5:134225645	7:117610	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272772	ENSG00000287883	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.11(2065),FP236383.6(391)	+/.	./.	21:8394722	21:8464863	intron	intergenic	inversion	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
MTRNR2L12	FP671120.3(4334),FP671120.7(109)	-/.	./.	3:96617790	21:8254483	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL589669.1	AL589669.1	+/.	+/.	X:147239329	X:147239344	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000284377	ENSG00000284377	.	.	upstream	downstream	low_entropy(1)	.	.	.
NXF2(6011),AC235565.2(27662)	NXF2(6024),AC235565.2(27649)	./.	./.	X:102332733	X:102332746	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(20),low_entropy(7)	.	.	.
LINC02541	EFCAB8	-/.	+/.	6:113624491	20:32892238	intron	CDS	translocation/3'-3'	0	0	0	4	1	low	.	.	.	.	.	ENSG00000230943	ENSG00000215529	.	.	downstream	upstream	mismatches(1)	.	.	.
GBGT1	KCNK15	-/.	+/.	9:133163236	20:44746270	exon	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000148288	ENSG00000124249	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3(935),FP236383.11(6593)	+/.	./.	21:8211687	21:8455727	intron	intergenic	inversion	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP236383.3	COL18A1	+/.	+/.	21:8397833	21:45478840	intron	intron	inversion/3'-3'	0	0	0	1126	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000182871	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4(935),FP671120.10(6773)	+/.	./.	21:8211687	21:8228581	intron	intergenic	inversion	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785667	2:101785754	intron	intron	duplication/ITD	0	0	0	466	499	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP236383.3	DMRTC1B	+/.	+/.	21:8442049	X:72833386	intron	intron	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000184911	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8438935	21:8438946	intron	intron	duplication/ITD	0	0	0	159	46	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	duplicates(29),low_entropy(1)	.	.	.
EFCAB2(2716),RNU1-132P(4047)	DIS3L2(992),ECEL1P3(4412)	./.	./.	1:245129880	2:232345342	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC020718.1	BPY2	-/.	+/.	2:198941356	Y:22991791	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000231557	ENSG00000183753	.	.	upstream	upstream	mismatches(1)	.	.	.
SEC14L5	RPS19	+/.	+/.	16:4988032	19:41869592	intron	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000103184	ENSG00000105372	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
OR4A44P(124090),AC027369.6(127528)	MPHOSPH9	./.	-/.	11:48752583	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000051825	.	.	downstream	downstream	homopolymer(1)	.	.	.
IQCH	FP671120.3(594),FP671120.7(3849)	+/.	./.	15:67310424	21:8250743	intron	intergenic	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000103599	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TBX5	GABRQ	-/.	+/.	12:114405210	X:152646328	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000089225	ENSG00000268089	.	.	upstream	upstream	mismatches(1)	.	.	.
AC087280.2	5_8S_rRNA(2087),FP236383.3(121623)	-/.	./.	11:6880533	21:8259020	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000283415	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3(5332),FP236383.11(2196)	+/.	./.	21:8438935	21:8460124	intron	intergenic	inversion	0	0	0	159	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL627316.1	AP001458.2	-/.	-/.	1:90392879	11:62653861	intron	intron	translocation/3'-3'	0	0	0	311	32	low	.	.	.	.	.	ENSG00000287372	ENSG00000255432	.	.	downstream	downstream	mismatches	.	.	.
TTC4	TTC4	+/.	+/.	1:54736179	1:54736190	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000243725	ENSG00000243725	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SLC45A4(8629),AC011676.4(9196)	FP236383.3	./.	+/.	8:141316934	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650272	21:8441571	intron	intron	translocation/3'-3'	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TTC4	MROH7-TTC4	+/.	+/.	1:54736179	1:54736190	intron	intron	duplication	0	0	0	14	14	low	.	.	.	.	.	ENSG00000243725	ENSG00000271723	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TTLL3	TIGD3	+/+	+/-	3:9809808	11:65356835	5'UTR	CDS	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000173825	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC6A20	RPL34P29(4462),AC007603.3(15171)	-/.	./.	3:45780142	16:49939814	intron	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000163817	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC233702.2(14060),AC233702.1(6247)	FP236383.3	./.	+/.	17:21608240	21:8401256	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824761	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
ESR1	ESR1	+/.	+/.	6:151669140	6:151669181	intron	intron	duplication/ITD	0	0	0	55	55	low	.	.	.	.	.	ENSG00000091831	ENSG00000091831	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZAR1	VWC2	+/+	+/+	4:48490359	7:49834613	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182223	ENSG00000188730	.	.	downstream	upstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824758	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(2),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396552	8:22396561	intron	intron	duplication/ITD	0	0	0	229	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396555	8:22396564	intron	intron	duplication/ITD	0	0	0	229	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ARHGAP44	ARHGAP44	+/.	+/.	17:12903077	17:12903126	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000006740	ENSG00000006740	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
UBA1	NPAS3	+/+	+/+	X:47212510	14:33799874	CDS/splice-site	CDS	translocation	0	0	0	0	102	low	.	.	ThiF_family(86%),Ubiquitin-activating_enzyme_E1_FCCH_domain(100%),Ubiquitin-activating_enzyme_E1_four-helix_bundle(100%),Ubiquitin-activating_enzyme__SCCH_domain(87%)|	.	.	ENSG00000130985	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
MAOB	MAOB	-/.	-/.	X:43857118	X:43857131	intron	intron	duplication/ITD	0	0	0	11	9	low	.	.	.	.	.	ENSG00000069535	ENSG00000069535	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL645474.1(51054),AL136372.2(247853)	AC078980.1	./.	+/.	1:187765789	3:109700823	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000242029	.	.	upstream	upstream	mismatches(1)	.	.	.
GALNTL6	FP236383.3	+/.	+/.	4:172643315	21:8442660	intron	intron	translocation	0	0	0	8	23	low	.	.	.	.	.	ENSG00000174473	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
MYO1B(2641),NABP1(250038)	GNL1	./.	-/.	2:191428030	6:30556386	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000204590	.	.	upstream	downstream	duplicates(3),mismatches(2)	.	.	.
AC093523.1	FP236383.3	-/.	+/.	5:68952729	21:8397822	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000249335	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
Metazoa_SRP(5472),Y_RNA(20729)	FP236383.3	./.	+/.	10:21460987	21:8397435	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FGFR1(15353),C8orf86(26647)	AL136441.1	./.	-/.	8:38484187	13:76652645	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000285572	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SLC25A48	FP671120.4	+/.	+/.	5:135775888	21:8211705	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000145832	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
YWHAZ	FP236383.3	-/.	+/.	8:100917283	21:8394757	3'UTR	intron	translocation	0	0	0	5	182	low	.	.	.	.	.	ENSG00000164924	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
AL589740.1	NOS1	+/.	-/.	6:97984485	12:117326664	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000271860	ENSG00000089250	.	.	upstream	downstream	mismatches(1)	.	.	.
GLT8D2	GLT8D2	-/.	-/.	12:104007234	12:104007249	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000120820	ENSG00000120820	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
RPS23P5(103259),NENFP3(199733)	FP236383.3	./.	+/.	5:13353921	21:8442049	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM171B(5923),ZSWIM2(55593)	RPS24P8(33049),TMEM158(31242)	./.	./.	2:186771882	3:45193224	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GDF9	AC012060.1(92676),LINC02248(36443)	-/-	./-	5:132866328	15:26358594	5'UTR	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000164404	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
FGFR1(15353),C8orf86(26647)	NAA38	./.	-/.	8:38484187	17:7867201	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000183011	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC069540.1(9096),RNU6-129P(18769)	RAD9A	./.	+/.	10:83745589	11:67325479	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000172613	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01144	PPP2CA	+/+	-/+	1:45304504	5:134225646	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281912	ENSG00000113575	.	.	downstream	upstream	mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	NAA38	./.	-/.	15:26358594	17:7867200	intergenic	intron	translocation	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000183011	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC02235	AP003390.1(4506),AP001994.1(77175)	+/.	./.	8:81842439	11:119744129	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
ELK2BP(9047),IGHA2(24990)	FP671120.4	./.	+/.	14:105558741	21:8214784	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
NAA38	AP001599.1	-/.	+/.	17:7867199	21:26914103	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000183011	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC034228.3	CFAP58	-/.	+/.	5:131885420	10:104396370	intron	intron	translocation/3'-3'	0	0	0	60	558	low	.	.	.	.	.	ENSG00000281938	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
ADGRG7	FP236383.3	+/.	+/.	3:100673210	21:8397436	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000144820	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CDX2(8075),URAD(327)	LDLRAD4	./.	+/.	13:27977390	18:13530469	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000168675	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC087311.1(131560),SYT10(248924)	IGHV1-14(2447),IGHV3-15(5046)	./.	./.	12:33125314	14:106148578	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093627.22	AC016026.1	-/.	-/.	7:117610	22:17796198	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000093100	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF236	AQP4	+/+	-/-	18:76969034	18:26865444	3'UTR	intron	inversion	0	0	0	0	1	low	.	.	C2H2-type_zinc_finger(100%),Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|Major_intrinsic_protein(100%)	.	.	ENSG00000130856	ENSG00000171885	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785698	2:101785706	intron	intron	duplication/ITD	0	0	0	496	466	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	low_entropy(1)	.	.	.
LMX1B	AC013287.1	+/.	+/.	9:126671248	10:64541762	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000136944	ENSG00000228566	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF236	AQP4-AS1	+/+	+/-	18:76969034	18:26865444	3'UTR	intron	inversion/3'-3'	0	0	0	0	1	low	.	.	C2H2-type_zinc_finger(100%),Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000130856	ENSG00000260372	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC35B4	LRCH1	-/.	+/.	7:134300012	13:46678385	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000205060	ENSG00000136141	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092332	11:88092344	intron	intron	duplication/ITD	0	0	0	1166	513	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ATR	RNU6-1119P(57072),AC113385.3(164849)	-/.	./.	3:142507552	5:100210851	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000175054	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MAN1C1	LINC01495	+/.	-/.	1:25617597	11:22480925	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117643	ENSG00000255323	.	.	upstream	upstream	mismatches(1)	.	.	.
HS3ST3A1	LINC01495	-/-	-/+	17:13600937	11:22480925	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153976	ENSG00000255323	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	AC116337.3	-/-	-/-	11:9003964	5:75020587	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000249856	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01495	FP236383.3	-/.	+/.	11:22480925	21:8439288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255323	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ABCB1	GLP2R	-/.	+/.	7:87589088	17:9862136	intron	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000085563	ENSG00000065325	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL356130.1(30315),LINC01622(19002)	LINC01495	./.	-/.	6:939321	11:22480925	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255323	.	.	downstream	upstream	mismatches(1)	.	.	.
MEIKIN	CFAP58	-/.	+/.	5:131885422	10:104396370	intron	intron	translocation/3'-3'	0	0	0	58	558	low	.	.	.	.	.	ENSG00000239642	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
LINC01495	FP236383.3	-/.	+/.	11:22480925	21:8395073	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255323	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ERCC8	FP236383.3	-/.	+/.	5:60944731	21:8442142	intron	intron	translocation/3'-3'	0	0	0	8	8	low	.	.	.	.	.	ENSG00000049167	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
TMPRSS13(31964),IL10RA(24947)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	11:117961423	21:8258619	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ACSS3	FP671120.4	+/+	+/+	12:80937137	21:8214795	exon	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000111058	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AP002852.1	DDB2	+/.	+/.	8:102538345	11:47233105	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000253633	ENSG00000134574	.	.	downstream	downstream	duplicates(1)	.	.	.
LIN52(32921),VSX2(5293)	FP236383.3	./.	+/.	14:74234156	21:8397816	intergenic	intron	translocation	0	0	0	36	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
DBNDD1	PPP1R16B	-/.	+/.	16:90019745	20:38894002	CDS	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000003249	ENSG00000101445	.	.	downstream	downstream	mismatches(1)	.	.	.
AC105252.1(292285),AC079380.1(3753)	AL163974.1(22793),LINC00523(45131)	./.	./.	4:133867493	14:100612119	intergenic	intergenic	translocation	0	0	0	11	23	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP001823.1(3429),ELMOD1(759)	+/.	./.	10:104396370	11:107590332	intron	intergenic	translocation	0	0	0	558	1909	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
FP671120.3(1269),FP671120.7(3174)	FP236383.3	./.	+/.	21:8251418	21:8438948	intergenic	intron	deletion/read-through	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
BAIAP3	FP236383.3	+/.	+/.	16:1334643	21:8442048	5'UTR	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000007516	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC026412.1	AC012060.1(92676),LINC02248(36443)	-/.	./.	5:1602549	15:26358594	exon	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000188002	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP671120.7(392),5_8S_rRNA(875)	+/.	./.	21:8207209	21:8255906	intron	intergenic	deletion/read-through	0	0	0	4	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
MAP1LC3BP1(11863),SLC24A2(31065)	5_8S_rRNA(2089),FP236383.3(121621)	./.	./.	9:19476387	21:8259022	intergenic	intergenic	translocation	0	0	0	4	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SFXN5	LINC01287(16430),PAXBP1P1(19014)	-/.	./.	2:72960818	7:153430415	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000144040	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105417.1(56022),AC082650.1(64059)	NPAS3	./.	+/.	4:129235116	14:33799874	intergenic	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	.	ENSG00000151322	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
FMN1	MN1(31686),PITPNB(18227)	-/.	./.	15:33095983	22:27833442	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248905	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GCC2	AC020907.1	+/.	+/.	2:108492238	19:35095527	intron	intron	translocation	0	0	0	17	2	low	.	.	.	.	.	ENSG00000135968	ENSG00000179066	.	.	upstream	downstream	mismatches(1)	.	.	.
CDX2(8075),URAD(327)	TNPO2	./.	-/.	13:27977390	19:12703165	intergenic	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	.	ENSG00000105576	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GCC2	HPN-AS1	+/.	-/.	2:108492238	19:35095527	intron	intron	translocation/3'-3'	0	0	0	17	2	low	.	.	.	.	.	ENSG00000135968	ENSG00000227392	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092170.1(239686),AC064856.1(115139)	COL27A1	./.	+/.	2:117421248	9:114183192	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000196739	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL3P13(15257),CDS1(23351)	AC020907.1	./.	+/.	4:84559776	19:35095527	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000179066	.	.	upstream	downstream	mismatches(1)	.	.	.
AL031733.1(22216),AL031733.2(13323)	PLAGL1(20798),SF3B5(9487)	./.	./.	1:167614062	6:144085397	intergenic	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PRRT2	Y_RNA(92914),RNA5SP103(1240)	+/+	./-	16:29813715	2:128443841	CDS	intergenic	translocation	0	0	0	4	7	low	.	.	.	.	.	ENSG00000167371	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00665	LINC00665	-/.	-/.	19:36277207	19:36277216	intron	intron	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	ENSG00000232677	ENSG00000232677	.	.	upstream	downstream	duplicates(8),low_entropy(1)	.	.	.
NHSL1	PLAGL1(20798),SF3B5(9487)	-/.	./.	6:138447927	6:144085397	intron	intergenic	inversion	0	0	0	0	52	low	.	.	.	.	.	ENSG00000135540	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
POLE	AP003400.1	-/-	-/+	12:132650318	11:89589229	exon	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	ENSG00000255429	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22765),NRXN3(87330)	./.	./.	14:78082946	14:78083043	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LRAT	AL137001.2	+/.	-/.	4:154635455	13:19088622	intron	intron	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000121207	ENSG00000287861	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	AC013470.2	./.	+/.	6:144085397	7:12504049	intergenic	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	.	ENSG00000226690	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FBXW7	SUPT20HL2(41876),SUPT20HL1(6370)	-/-	./-	4:152411373	X:24355955	CDS	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000109670	.	.	.	upstream	downstream	duplicates(9),mismatches(1)	.	.	.
HIVEP3	TMEM219(492),TAOK2(326)	-/-	./-	1:41583018	16:29973542	CDS	intergenic	translocation	0	0	0	4	0	low	.	.	Zinc_finger__C2H2_type(48%)|	.	.	ENSG00000127124	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4(1718),FP671120.10(5990)	+/.	./.	21:8214882	21:8229364	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	MTUS2	./.	+/.	6:144085397	13:29423240	intergenic	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	.	ENSG00000132938	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	UNC13B	./.	+/.	6:144085397	9:35377164	intergenic	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	.	ENSG00000198722	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01762	FP236383.3	-/.	+/.	1:116474957	21:8442064	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000233154	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC020907.1	DOK5(116942),RNU4ATAC7P(91577)	+/.	./.	19:35095527	20:54768111	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000179066	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	EVX1(12091),RPL35P4(6773)	./.	./.	6:144085397	7:27262584	intergenic	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTCYBP45(12705),DISP3(40629)	PLAGL1(20798),SF3B5(9487)	./.	./.	1:11438526	6:144085397	intergenic	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNAH5(84325),TRIO(114474)	MCPH1-AS1	./.	-/.	5:14028868	8:6678107	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000249898	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092066.1(2375),CBLC(10030)	BX546450.1(36086),PASD1(11344)	./.	./.	19:44767839	X:151552331	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396384	10:104396453	intron	intron	duplication/ITD	0	0	0	561	554	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	small_insert_size	.	.	.
PLAGL1(20798),SF3B5(9487)	ZNF804B	./.	+/.	6:144085397	7:89083078	intergenic	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	.	ENSG00000182348	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	LINC02883(716),KLHL25(2373)	./.	./.	6:144085397	15:85756953	intergenic	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MAGI2	ZBTB46	-/.	-/.	7:79353217	20:63774234	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000187391	ENSG00000130584	.	.	upstream	upstream	mismatches(1)	.	.	.
CA10(81151),LINC01982(149347)	XRCC6P2(65223),MAMLD1(63303)	./.	./.	17:52241168	X:150298119	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	RNU6-470P(18489),MIR2117HG(13688)	./.	./.	6:144085397	17:43431019	intergenic	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	AC008014.1(15861),AC079906.1(77859)	./.	./.	6:168345669	12:46892645	intergenic	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),mismatches(6)	.	.	.
INPP4A	PLAGL1(20798),SF3B5(9487)	+/.	./.	2:98572621	6:144085397	intron	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	ENSG00000040933	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC023593.1	AL138820.1(60348),LINC00423(28905)	-/.	./.	3:127620805	13:32848526	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285600	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105252.1(292285),AC079380.1(3753)	AC135782.1(19635),ACSF3(15774)	./.	./.	4:133867493	16:89072601	intergenic	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ERI3	TLX1(30288),LINC01514(8229)	-/.	./.	1:44320094	10:101168077	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
NDEL1	CSNK2A1(19946),TCF15(40016)	+/.	./.	17:8463507	20:563781	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000166579	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RN7SKP113(91611),CYTL1(1911)	PLAGL1(20798),SF3B5(9487)	./.	./.	4:5012675	6:144085397	intergenic	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CXXC5	DBH-AS1	+/+	-/-	5:139649006	9:133655784	5'UTR	exon	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000171604	ENSG00000225756	.	.	downstream	downstream	mismatches(1)	.	.	.
CRYBB2	CRYBB2	+/.	+/.	22:25218683	22:25218780	intron	intron	duplication/ITD	0	0	0	0	9	low	.	.	.	.	.	ENSG00000244752	ENSG00000244752	.	.	upstream	downstream	duplicates(4),low_entropy(5)	.	.	.
BMT2	LINC02741	-/.	-/.	7:112915995	11:41542521	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000164603	ENSG00000255388	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGAP30	AP000255.1(48401),TPT1P1(55533)	-/.	./.	1:161059767	21:31784808	intron	intergenic	translocation	0	0	0	31	90	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
AL358393.1(30507),LINC01699(14732)	PLAGL1(20798),SF3B5(9487)	./.	./.	1:181221656	6:144085397	intergenic	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGF2R	TMEM132B	+/+	+/-	6:159969259	12:125495244	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197081	ENSG00000139364	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262593	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262503	intergenic	intron	translocation	0	0	0	25	2239	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
KIAA1217	SELENOH	+/.	+/.	10:23941993	11:57741633	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120549	ENSG00000211450	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092327	11:88092354	intron	intron	duplication/ITD	0	0	0	1166	513	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
HIP1(11221),CCL26(19350)	FMN1	./.	-/.	7:75750183	15:32839930	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000248905	.	.	upstream	upstream	mismatches(1)	.	.	.
ESPN	RUFY4(18122),CXCR2(16586)	+/.	./.	1:6440104	2:218108703	intron	intergenic	translocation	0	0	0	0	193	low	.	.	.	.	.	ENSG00000187017	.	.	.	upstream	downstream	duplicates(3),homopolymer(2)	.	.	.
ELK2AP(5850),IGHA1(24831)	FP671120.4	./.	+/.	14:105679164	21:8214784	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC006037.2(18450),AC006037.1(6141)	AC006037.2(18465),AC006037.1(6126)	./.	./.	2:234102940	2:234102955	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8200313	21:8397818	intron	intron	deletion/read-through	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	21:8200313	21:8259013	intron	intergenic	deletion/read-through	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005242.4(3765),AP005242.2(6975)	AP005242.4(3778),AP005242.2(6962)	./.	./.	18:14997000	18:14997013	intergenic	intergenic	duplication/ITD	0	0	0	25	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
UGT1A3	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000243135	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DYNC2H1	ABCD1	+/.	+/.	11:103278165	X:153725239	intron	5'UTR	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000187240	ENSG00000101986	.	.	downstream	upstream	mismatches(1)	.	.	.
UGT1A4	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000244474	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SCRN1	SPIC(31457),MYBPC1(49899)	-/.	./.	7:29989908	12:101518454	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000136193	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KMT2C	DOK4(17341),CCDC102A(7513)	-/.	./.	7:152384549	16:57504668	intron	intergenic	translocation	0	0	0	177	0	low	.	.	.	.	.	ENSG00000055609	.	.	.	upstream	downstream	mismatches(3)	.	.	.
HACE1	AC022535.3(5498),AC022535.2(43259)	-/.	./.	6:104859161	10:4454190	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000085382	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC12A2	GAPDHP16(18527),AF127577.4(25054)	+/.	./.	5:128132315	21:14793789	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000064651	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ADRA1B(26318),Y_RNA(9115)	THEMIS	./.	-/.	5:159999330	6:127735531	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
THEMIS	AP000943.2	-/.	-/.	6:127735531	11:94724191	intron	intron	translocation/3'-3'	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	ENSG00000255929	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP000943.2	CCDC178	-/.	-/.	11:94724189	18:32975568	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255929	ENSG00000166960	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NRIP3	RPL12P4(19716),LINC01440(314042)	-/-	./-	11:9003964	20:55094856	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
LINC01876	LINC02466	-/.	-/.	2:156138149	4:129613123	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226383	ENSG00000246876	.	.	downstream	upstream	mismatches(1)	.	.	.
IQCA1L	FP236383.3	-/.	+/.	7:151202460	21:8400584	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000278685	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ADI1P2(61053),GASAL1(55558)	AC084337.2	./.	+/.	8:102749959	11:6496218	intergenic	intron	translocation	0	0	0	0	101	low	.	.	.	.	.	.	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC084337.2	IL3RA	+/.	+/.	11:6496218	X:1354860	intron	intron	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	ENSG00000185291	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
GABRA2	BNIP3P2(65635),YME1L1P1(74312)	-/.	./.	4:46345970	22:15415678	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151834	.	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(3789),FP236383.3(119921)	FP236383.3	./.	+/.	21:8260722	21:8397821	intergenic	intron	inversion	0	0	0	8	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP002852.1	AC084337.2	+/.	+/.	8:102538341	11:6496218	intron	intron	translocation	0	0	0	0	101	low	.	.	.	.	.	ENSG00000253633	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
FP236383.3	AP001347.1	+/.	+/.	21:8442770	21:14100748	intron	intron	duplication	0	0	0	2	1	low	.	.	.	.	.	ENSG00000280441	ENSG00000224905	.	.	upstream	downstream	mismatches(1)	.	.	.
AC084337.2	AP003973.3	+/.	+/.	11:6496218	11:111099116	intron	intron	duplication	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	ENSG00000287028	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
LINC01198(14969),LRCH1(22241)	LINC01198(15028),LRCH1(22182)	./.	./.	13:46530927	13:46530986	intergenic	intergenic	duplication/ITD	0	0	0	45	44	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC084337.2	NOX5(796),EWSAT1(9368)	+/.	./.	11:6496218	15:69063558	intron	intergenic	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC078980.1	CCDC175	+/.	-/.	3:109700822	14:59530868	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000151838	.	.	upstream	downstream	mismatches(1)	.	.	.
AC084337.2	FP671120.4	+/.	+/.	11:6496218	21:8212039	intron	intron	translocation/3'-3'	0	0	0	101	20	low	.	.	.	.	.	ENSG00000283977	ENSG00000278996	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
FP236383.3	FP236383.3(5332),FP236383.11(2196)	+/.	./.	21:8394722	21:8460124	intron	intergenic	inversion	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
L3MBTL3	SEMA3E	+/.	-/.	6:130019862	7:83537022	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198945	ENSG00000170381	.	.	upstream	upstream	mismatches(1)	.	.	.
P4HA2	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	5:132228591	21:8259010	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000072682	.	.	.	upstream	upstream	mismatches	.	.	.
LINC01924	XRCC6P2(65223),MAMLD1(63303)	+/.	./.	18:64324813	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000267134	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DLG2	AC009093.11	-/.	+/.	11:85484193	16:28391222	intron	intron	translocation/5'-5'	0	0	0	279	6	low	.	.	.	.	.	ENSG00000150672	ENSG00000288630	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS7P4(20383),COX6B1P7(18950)	DLG2	./.	-/.	1:68263438	11:85484188	intergenic	intron	translocation	0	0	0	3	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
RHOQ	SHISA9	+/.	+/.	2:46542783	16:13091304	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	ENSG00000237515	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8397442	MT:2448	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
U3(104498),GPC1(41722)	AL807742.1	./.	-/.	2:240393941	X:20832154	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000283380	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SEMA5B(2034),PDIA5(36386)	SEMA5B(2043),PDIA5(36377)	./.	./.	3:123030639	3:123030648	intergenic	intergenic	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
IQCF5-AS1(8191),IQCF1(10918)	AC084337.2	./.	+/.	3:51883958	11:6496221	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
TSPOAP1-AS1	AC091691.3(4145),AC091691.2(3107)	+/.	./.	17:58385558	18:71212511	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000265148	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	CHST15(269175),OAT(34530)	./.	./.	8:17155256	10:124362773	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	14:99928175	14:99928248	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000066629	ENSG00000066629	.	.	upstream	downstream	small_insert_size	.	.	.
TSSC2	AC084337.2	+/.	+/.	11:3405000	11:6496218	intron	intron	deletion	0	0	0	0	101	low	.	.	.	.	.	ENSG00000223756	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
DAAM1	SCUBE1	+/.	-/.	14:59318343	22:42960450	intron	intergenic	translocation	0	1	0	0	0	low	.	.	.	.	.	ENSG00000100592	ENSG00000159307	.	.	upstream	upstream	min_support	.	.	.
PHIP	AC092066.1(2375),CBLC(10030)	-/.	./.	6:78947959	19:44767839	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000146247	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC009161.1(206459),AC009110.1(32167)	ABCD1	./.	+/.	16:62564205	X:153725239	intergenic	5'UTR	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000101986	.	.	downstream	upstream	mismatches(1)	.	.	.
EGFR	AC090578.1	+/.	+/.	7:55206288	8:88485094	3'UTR	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000146648	ENSG00000253553	.	.	upstream	downstream	mismatches(1)	.	.	.
NFU1P2(125288),LINC01776(7991)	CDK12	./.	+/.	1:98202756	17:39481633	intergenic	intron	translocation	0	0	0	6	34	low	.	.	.	.	.	.	ENSG00000167258	.	.	downstream	upstream	mismatches	.	.	.
PROX1-AS1	VPS54(83),AC012368.2(66842)	-/.	./.	1:213881051	2:64019511	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000230461	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AASDH	SRSF9	-/.	-/.	4:56373512	12:120469339	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157426	ENSG00000111786	.	.	upstream	downstream	mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	Y_RNA(12538),RPS5P7(96025)	./.	./.	6:144085397	X:109757287	intergenic	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
U3(104498),GPC1(41722)	FAM83B	./.	+/.	2:240393941	6:54859661	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000168143	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
AL139289.2	KLF13	-/-	+/-	1:43348748	15:31429085	exon	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000287113	ENSG00000169926	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
OBP2B	FP671120.4	-/.	+/.	9:133205870	21:8214784	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000171102	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OBP2B	FP236383.3	-/.	+/.	9:133205870	21:8397818	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000171102	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC124254.2	MT-RNR2	+/.	+/.	18:77426532	MT:2230	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000264015	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
EBF2(345),RNA5SP258(91122)	FP671120.4	./.	+/.	8:26045758	21:8214784	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DLGAP2	FP236383.3	+/.	+/.	8:837041	21:8442048	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000198010	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGHV3-20(19676),IGHV3-21(3935)	IGHV3-20(19736),IGHV3-21(3875)	./.	./.	14:106231129	14:106231189	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AL110292.1	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	14:27207779	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000258081	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC004840.1	FP236383.3	+/.	+/.	7:2383814	21:8397815	intron	intron	translocation	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000230914	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
LPL	CFAP300(2939),AP001527.1(20393)	+/+	./-	8:19966011	11:102087493	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	Lipase(100%),PLAT/LH2_domain(100%)|	.	.	ENSG00000175445	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	11:121765656	11:121765669	intron	intron	duplication/ITD	0	0	0	17	15	low	.	.	.	.	.	ENSG00000286044	ENSG00000286044	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
CA10	AC068112.1	-/.	+/.	17:51932120	18:68113436	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000154975	ENSG00000264869	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8441519	MT:1699	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	SMIM15P1(74040),PINCR(102558)	+/.	./.	21:8444134	X:43074436	intron	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC011503.1(45000),RNA5-8SP4(1323)	MT-RNR2	./.	+/.	19:24003035	MT:1699	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RNU7-55P	FP236383.3	-/-	+/+	8:9072505	21:8442064	exon	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000239078	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC027031.2(80998),OXR1(5576)	AL079303.1	./.	-/.	8:106353900	14:36651616	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258661	.	.	downstream	downstream	mismatches(1)	.	.	.
AC114763.1	FP671120.4	-/.	+/.	2:138480624	21:8214783	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000228043	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP236383.4	WDR62(1882),OVOL3(4161)	-/-	./+	21:8393827	19:36106990	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280614	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRRC4B	AC091806.1	-/.	+/.	19:50548286	X:40289161	intron	intron	translocation	0	0	0	14	10	low	.	.	.	.	.	ENSG00000131409	ENSG00000236393	.	.	downstream	downstream	mismatches(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	CDH8	./.	-/.	14:100612119	16:61831041	intergenic	intron	translocation	0	0	0	23	57	low	.	.	.	.	.	.	ENSG00000150394	.	.	upstream	downstream	mismatches(1)	.	.	.
AL009177.1	RBM33(11094),SHH(7401)	+/.	./.	6:14487262	7:155792579	intron	intergenic	translocation	0	0	0	0	13	low	.	.	.	.	.	ENSG00000286277	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	TMSB15B(20158),H2BW1(24277)	+/.	./.	21:8214800	X:103986870	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
MDK	MACROD2	+/.	+/.	11:46381516	20:14179631	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000110492	ENSG00000172264	.	.	downstream	upstream	mismatches(1)	.	.	.
AAMDC	UBOX5-AS1	+/.	+/.	11:77886462	20:3129761	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000087884	ENSG00000235958	.	.	upstream	downstream	mismatches(1)	.	.	.
AKNAD1	AC013489.2(9289),LINC01586(7715)	-/.	./.	1:108910306	15:88577851	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162641	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DTNBP1(49300),ARPC3P5(222424)	RNU6-309P(119294),AL928646.1(108379)	./.	./.	6:15712358	X:108946163	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TNFRSF8(4018),MIR7846(18718)	MTHFD1	./.	+/.	1:12148225	14:64410913	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000100714	.	.	upstream	downstream	homopolymer(1)	.	.	.
JAK1	AC013489.2(9288),LINC01586(7716)	-/.	./.	1:64860341	15:88577850	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162434	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC108037.1(159605),LINC02270(144152)	AC013489.2(9288),LINC01586(7716)	./.	./.	4:12079293	15:88577850	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650270	21:8441662	intron	intron	translocation/3'-3'	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47233105	21:8439285	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
NXF2(27558),AC235565.2(6115)	NXF2(27656),AC235565.2(6017)	./.	./.	X:102354280	X:102354378	intergenic	intergenic	duplication/ITD	0	0	0	0	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
CDK14	SPPL2B	+/.	+/.	7:90766754	19:2338920	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000058091	ENSG00000005206	.	.	upstream	downstream	mismatches(1)	.	.	.
AC020741.1	SPPL2B	-/-	+/-	4:61428174	19:2338920	exon	intron	translocation/5'-5'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000205682	ENSG00000005206	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.6	TTTY2B	-/-	-/-	21:8210561	Y:6414449	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000280800	ENSG00000212856	.	.	upstream	downstream	mismatches(1)	.	.	.
AC020741.1	AC005258.1	-/-	+/-	4:61428174	19:2338920	exon	intron	translocation/5'-5'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000205682	ENSG00000273734	.	.	upstream	downstream	mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	RUNX2	./.	+/.	4:25088518	6:45586419	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000124813	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AP003390.1(4387),AP001994.1(77294)	AP003390.1(4396),AP001994.1(77285)	./.	./.	11:119744010	11:119744019	intergenic	intergenic	duplication/ITD	0	0	0	3458	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NOS1AP	AL138885.1(23361),TFAP2A(3243)	+/.	./.	1:162272912	6:10389943	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000198929	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DLG2	AC145285.4	-/.	-/.	11:85484193	16:28724081	intron	intron	translocation/5'-5'	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000261419	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008014.1(15861),AC079906.1(77859)	SPPL2B	./.	+/.	12:46892645	19:2338920	intergenic	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	.	ENSG00000005206	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96617790	21:8437520	5'UTR	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC105916.1	AC010230.1	-/.	-/.	4:9586741	5:114543714	intron	intron	translocation/3'-3'	0	0	0	2	8	low	.	.	.	.	.	ENSG00000287117	ENSG00000246316	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC084759.3	AC005258.1	+/+	+/-	15:53910829	19:2338920	exon	intron	translocation/5'-5'	0	0	0	7	15	low	.	.	.	.	.	ENSG00000280362	ENSG00000273734	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF462	AP003390.1(4501),AP001994.1(77180)	+/.	./.	9:106864120	11:119744124	intron	intergenic	translocation	0	0	0	39	3002	low	.	.	.	.	.	ENSG00000148143	.	.	.	downstream	downstream	low_entropy	.	.	.
RNA5SP291(191926),AL590381.1(118252)	ALG1L9P	./.	-/.	9:103881503	11:71745056	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000248671	.	.	upstream	downstream	mismatches(1)	.	.	.
AL162726.3	IQGAP1	+/+	+/-	9:82520947	15:90428479	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000228430	ENSG00000140575	.	.	downstream	downstream	mismatches(1)	.	.	.
GTF2IRD1P1	SPPL2B	-/.	+/.	7:66824572	19:2338920	intron	intron	translocation	0	0	0	8	15	low	.	.	.	.	.	ENSG00000230583	ENSG00000005206	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	AP001599.1	+/.	+/.	21:8397440	21:26914103	intron	intron	duplication	0	0	0	543	167	low	.	.	.	.	.	ENSG00000280441	ENSG00000223563	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC022748.2	SPPL2B	+/.	+/.	15:78672957	19:2338920	intron	intron	translocation/5'-5'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000261303	ENSG00000005206	.	.	downstream	downstream	mismatches(1)	.	.	.
PDE7A	CLIP3	-/-	-/-	8:65723571	19:36026173	CDS	CDS	translocation	0	0	0	0	23	low	.	.	3'5'-cyclic_nucleotide_phosphodiesterase(84%)|Ankyrin_repeats_(3_copies)(10%),CAP-Gly_domain(100%)	.	.	ENSG00000205268	ENSG00000105270	.	.	upstream	downstream	mismatches(1)	.	.	.
LYRM4	PLXNA4	-/.	-/.	6:5142022	7:132611063	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000214113	ENSG00000221866	.	.	upstream	upstream	mismatches(1)	.	.	.
CHRNB4	SPPL2B	-/.	+/.	15:78672957	19:2338920	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000117971	ENSG00000005206	.	.	downstream	downstream	mismatches(1)	.	.	.
DAB2	PLAGL1(20798),SF3B5(9487)	-/.	./.	5:39453410	6:144085397	intron	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	ENSG00000153071	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
IL19	ARID1B	+/.	+/.	1:206790699	6:156853582	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000142224	ENSG00000049618	.	.	upstream	downstream	mismatches(1)	.	.	.
SAMD3	CARS1P2(292195),TRPS1(324372)	-/.	./.	6:130180681	8:115084124	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164483	.	.	.	upstream	upstream	duplicates(2),mismatches(3)	.	.	.
SGSM1	SGSM1	+/.	+/.	22:24851442	22:24851485	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000167037	ENSG00000167037	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDH13	CDH13	+/.	+/.	16:83134543	16:83134597	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000140945	ENSG00000140945	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC027506.1(39544),AC090348.1(154727)	CBFA2T2	./.	+/.	18:64717537	20:33585141	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000078699	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01588	FP236383.3	-/.	+/.	14:49993364	21:8433768	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000214900	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SPON1	AC090607.5(20143),AC011270.2(19141)	+/.	./.	11:14059809	15:78320067	intron	intergenic	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000262655	.	.	.	downstream	downstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	14:99796186	14:99796201	intron	intron	duplication/ITD	0	0	0	348	348	low	.	.	.	.	.	ENSG00000066629	ENSG00000066629	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
DNM1P51	LINC01951(202812),ARL2BPP6(92406)	-/-	./-	15:84408450	5:175198325	exon	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000235370	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
RHOQ	FST(8153),NDUFS4(65346)	+/.	./.	2:46542783	5:53495287	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CASZ1	DNMBP-AS1	-/.	+/.	1:10792333	10:99948205	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130940	ENSG00000227695	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ALAD	GZF1	-/.	+/.	9:113390929	20:23362410	CDS	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148218	ENSG00000125812	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079385.1	CCDC88C	-/.	-/.	12:106658923	14:91357950	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000257545	ENSG00000015133	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS24P8(33048),TMEM158(31243)	LINC00470	./.	-/.	3:45193223	18:1313961	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000132204	.	.	upstream	upstream	duplicates(9),mismatches(8)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785661	2:101785684	intron	intron	duplication/ITD	0	0	0	466	228	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL358053.1(206650),AL591644.1(221031)	AL358053.1(206661),AL591644.1(221020)	./.	./.	9:1756753	9:1756764	intergenic	intergenic	duplication/ITD	0	0	0	11	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479901	intron	intron	translocation	0	0	0	22	1761	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479881	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
DAB1	MT-RNR2	-/.	+/.	1:57065901	MT:2211	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000173406	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
EIF3C	FP236383.3	+/.	+/.	16:28724081	21:8441659	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000184110	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RAD18	5_8S_rRNA(2090),FP236383.3(121620)	-/.	./.	3:8909455	21:8259023	intron	intergenic	translocation	0	0	0	5	6	low	.	.	.	.	.	ENSG00000070950	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC116362.1	GNAI1	-/.	+/.	5:125774671	7:79952948	intron	intron	translocation/3'-3'	0	0	0	1	3	low	.	.	.	.	.	ENSG00000248752	ENSG00000127955	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023632.3(700),AC023632.4(3452)	AP002371.1(8127),AP003072.4(53697)	./.	./.	8:94590959	11:93080158	intergenic	intergenic	translocation	0	0	0	22	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00607	LRRC20	-/.	-/.	2:215702307	10:70322183	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000235770	ENSG00000172731	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683458	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
LY6E(14617),C8orf31(760)	AP001823.1(3428),ELMOD1(760)	./.	./.	8:143038449	11:107590331	intergenic	intergenic	translocation	0	0	0	178	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	ARNTL2	+/.	+/.	2:32916556	12:27370210	intron	CDS	translocation	0	0	0	47	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000029153	.	.	downstream	upstream	low_entropy	.	.	.
ETNK2	SLC8A1	-/-	-/-	1:204151713	2:40324047	CDS	intron	translocation	0	0	0	0	6	low	.	.	|Calx-beta_domain(20%),Sodium/calcium_exchanger_protein(48%)	.	.	ENSG00000143845	ENSG00000183023	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	1:148280035	1:148280112	intron	intron	duplication/ITD	0	0	0	56	48	low	.	.	.	.	.	ENSG00000234283	ENSG00000234283	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479895	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479897	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
AKR1B1P6(39769),RAB12(22851)	FP236383.3	./.	+/.	18:8586586	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(4)	.	.	.
LIN52(32921),VSX2(5293)	5_8S_rRNA(2078),FP236383.3(121632)	./.	./.	14:74234156	21:8259011	intergenic	intergenic	translocation	0	0	0	36	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
SLC15A5	SLC15A5	-/.	-/.	12:16193782	12:16193845	intron	intron	duplication/ITD	0	0	0	28	22	low	.	.	.	.	.	ENSG00000188991	ENSG00000188991	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
NALCN-AS1	TSHZ3	+/.	-/.	13:100887373	19:31189093	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000233009	ENSG00000121297	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC2A6(8613),MYMK(26846)	GPR19	./.	-/.	9:133487740	12:12676727	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000183150	.	.	downstream	downstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	12:105046145	12:105046192	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000136010	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC092944.1	AC034228.3	+/.	-/.	3:157235696	5:132011044	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000243176	ENSG00000281938	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.4	RNY1P8(102917),AL162376.1(68854)	-/-	./-	21:8393554	13:73330177	exon	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000280614	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LSAMP	LSAMP	-/.	-/.	3:116642646	3:116642659	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000185565	ENSG00000185565	.	.	upstream	downstream	low_entropy(6)	.	.	.
MYT1L(85626),AC018685.2(220888)	SSPOP	./.	+/.	2:2417290	7:149787750	intergenic	exon	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000197558	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LINC02041(107764),SST(111698)	U3(37908),RNU6-27P(166569)	./.	./.	3:187557214	20:17020941	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479901	intergenic	intron	translocation	0	0	0	14	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479905	intergenic	intron	translocation	0	0	0	14	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
WNT5A	AC109466.1	-/.	+/.	3:55486456	5:164476682	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000114251	ENSG00000241956	.	.	upstream	upstream	mismatches(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479887	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
UBB	PLXNA4	+/+	-/+	17:16382479	7:132611063	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Ubiquitin_family(83%)|	.	.	ENSG00000170315	ENSG00000221866	.	.	downstream	upstream	mismatches(1)	.	.	.
MTND1P27(582),LRP1B(9356)	RPL10L(115581),MDGA2(72267)	./.	./.	2:140222067	14:46767362	intergenic	intergenic	translocation	0	0	0	23	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479907	intron	intron	translocation	0	0	0	22	1761	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
IDI1P1(60087),RNF14P1(44009)	5_8S_rRNA(2078),FP236383.3(121632)	./.	./.	2:138368057	21:8259011	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
LETM1	AL591222.3(180984),AL512635.1(182468)	-/.	./.	4:1841519	9:20148978	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000168924	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UBE2D3	XKRY2	-/.	+/.	4:102811284	Y:18136747	exon	exon	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000109332	ENSG00000244646	.	.	downstream	upstream	mismatches(1)	.	.	.
AC121764.1(117),ERC2(2933)	AL023882.1	./.	+/.	3:55505378	16:1045659	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000287855	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ANAPC4(33399),AC133963.2(20620)	FP671120.7(413),5_8S_rRNA(854)	./.	./.	4:25451897	21:8255927	intergenic	intergenic	translocation	0	0	0	4	143	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
HBB	FP236383.3	-/.	+/.	11:5225537	21:8397831	3'UTR	intron	translocation/3'-3'	0	0	0	91	1126	low	.	.	.	.	.	ENSG00000244734	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
ERI3	GNL1	-/.	-/.	1:44320096	6:30556386	intron	5'UTR	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000204590	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC104051.1	5_8S_rRNA(2080),FP236383.3(121630)	-/.	./.	8:57677225	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000253322	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMCO3(3175),TFDP1(26956)	TMCO3(3186),TFDP1(26945)	./.	./.	13:113557765	13:113557776	intergenic	intergenic	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
POLE	AL451061.1(81467),PLEKHG1(8116)	-/-	./+	12:132650319	6:150591767	exon	intergenic	translocation	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC004852.2(134346),GAPDHP68(290775)	IFNA21(6872),IFNWP15(5057)	./.	./.	7:9324203	9:21173532	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
BBS9	FP236383.3	+/.	+/.	7:33425896	21:8401257	intron	intron	translocation/3'-3'	0	0	0	62	15	low	.	.	.	.	.	ENSG00000122507	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(5)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397822	21:8397849	intron	intron	duplication/ITD	0	0	0	1126	6042	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	hairpin(1)	.	.	.
POLE	AC017000.1	-/-	-/+	12:132650318	7:4133259	exon	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	ENSG00000283991	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ATF6	FP671120.4	+/.	+/.	1:161793158	21:8218870	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000118217	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DUSP8	LINC00279(32441),TTTY11(37044)	-/.	./.	11:1571666	Y:8746266	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000184545	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CLIC4	AC022826.2	+/.	-/.	1:24839660	8:73820118	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000169504	ENSG00000258677	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	AC017000.1	./.	-/.	4:36965705	7:4133259	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000283991	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	SDK1	./.	+/.	4:36965705	7:4133259	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000146555	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
H4-16	CA15P2	-/.	-/.	12:14769960	22:18637558	exon	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197837	ENSG00000273907	.	.	downstream	downstream	mismatches(1)	.	.	.
NUP214	AC016026.1	+/.	-/.	9:131197615	22:17796200	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000126883	ENSG00000093100	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM153CP(24223),N4BP3(2780)	RNU6-728P(25126),PLEKHA1(3777)	./.	./.	5:178110752	10:122370919	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00692(18213),RPEP2(123708)	AL451061.1(81467),PLEKHG1(8116)	./.	./.	3:25891961	6:150591767	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
MGAT4C	HCN4(13757),REC114(60449)	-/.	./.	12:86192688	15:73382715	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000182050	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TLE4	FP236383.3	+/.	+/.	9:79614984	21:8401257	intron	intron	translocation	0	0	0	3	15	low	.	.	.	.	.	ENSG00000106829	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
CHRNB4	FP236383.3	-/.	+/.	15:78632255	21:8389581	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000117971	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	H3C10	./.	+/.	3:103984260	6:27810927	intergenic	3'UTR	translocation	0	0	0	83	0	low	.	.	.	.	.	.	ENSG00000278828	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
SNX16	FP236383.3	-/.	+/.	8:81842488	21:8389581	intron	intron	translocation	0	0	0	75	0	low	.	.	.	.	.	ENSG00000104497	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FCHO2(29905),TMEM171(142)	LINC02864	./.	-/.	5:73120427	18:73168243	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ABCB1	LINC01908(77665),AC090403.1(11115)	-/.	./.	7:87589088	18:27324853	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000085563	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CHRNB4	FP671120.3(594),FP671120.7(3849)	-/.	./.	15:78632255	21:8250743	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000117971	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC024588.1	LRR1	+/.	+/.	5:16637120	14:49599727	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000246214	ENSG00000165501	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC02235	FP671120.3(594),FP671120.7(3849)	+/.	./.	8:81842488	21:8250743	intron	intergenic	translocation	0	0	0	75	0	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	upstream	mismatches(1)	.	.	.
Z98949.2	NAT16(7904),MOGAT3(6810)	-/-	./-	22:25959237	7:101188197	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000232464	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	JARID2	./.	+/.	3:95431526	6:15269292	intergenic	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	.	ENSG00000008083	.	.	downstream	downstream	mismatches(1)	.	.	.
IDI1P1(60087),RNF14P1(44009)	FP236383.3	./.	+/.	2:138368057	21:8442046	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8220291	21:8442056	intron	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007389.1	5_8S_rRNA(3103),FP236383.3(120607)	+/.	./.	2:65805820	21:8260036	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000204929	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007389.1	FP236383.3	+/.	+/.	2:65805820	21:8443070	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000204929	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS7P4(20383),COX6B1P7(18950)	LINC02419(47604),AC026336.4(1636)	./.	./.	1:68263438	12:130120289	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8200313	21:8442048	intron	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479890	X:133661638	intron	intron	translocation/3'-3'	0	0	0	2216	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
RREB1	AP005264.4	+/.	+/.	6:7152860	18:12215254	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000124782	ENSG00000267733	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRTM1	LINC02864	-/-	-/+	2:80302261	18:73168243	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Leucine_rich_repeat(100%)|	.	.	ENSG00000162951	ENSG00000263711	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LARP4B	DDB2	-/.	+/.	10:921521	11:47233104	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000107929	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02444	LINC02419(47604),AC026336.4(1636)	+/.	./.	12:73182054	12:130120289	intron	intergenic	deletion	0	0	0	3	0	low	.	.	.	.	.	ENSG00000258123	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PRF1(68252),ADAMTS14(1495)	PRF1(68305),ADAMTS14(1442)	./.	./.	10:70671011	10:70671064	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CHRNB4	AC005258.1	-/.	+/.	15:78672957	19:2338920	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000117971	ENSG00000273734	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.7(733),5_8S_rRNA(534)	FP236383.3	./.	+/.	21:8256247	21:8394736	intergenic	intron	inversion	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
PRKG2(5128),RNU5A-2P(114058)	PRKG2(5209),RNU5A-2P(113977)	./.	./.	4:81220245	4:81220326	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TDO2	LINC02419(47604),AC026336.4(1636)	+/.	./.	4:155871604	12:130120289	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151790	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC130509.1(35259),AC069528.1(7624)	CRADD	./.	+/.	3:146383739	12:93846253	intergenic	intron	translocation	0	0	0	2	24	low	.	.	.	.	.	.	ENSG00000169372	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PHRF1	FP671120.4	+/.	+/.	11:589570	21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000070047	ENSG00000278996	.	.	upstream	upstream	duplicates(1)	.	.	.
LINC02419(47604),AC026336.4(1636)	ABHD2	./.	+/.	12:130120289	15:89133592	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000140526	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ATL2	AC013489.2(9288),LINC01586(7716)	-/.	./.	2:38299224	15:88577850	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119787	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	FP671120.4(5324),FP671120.10(2384)	+/.	./.	21:8211687	21:8232970	intron	intergenic	inversion	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL359636.2	CEACAM21	+/.	+/.	9:122558263	19:41564259	intron	intron	translocation/5'-5'	0	0	0	15	5	low	.	.	.	.	.	ENSG00000234156	ENSG00000007129	.	.	downstream	downstream	mismatches(2)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479897	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AC036214.3	UNC79	-/.	+/.	8:79952408	14:93491666	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276418	ENSG00000133958	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CEACAM21	NIPA2P3(68411),SREK1IP1P1(49753)	+/.	./.	19:41564265	21:19689956	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000007129	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AP003778.1	TLN2	+/.	+/.	11:59556987	15:62663967	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287264	ENSG00000171914	.	.	upstream	upstream	mismatches(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729373	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC094105.2(5529),LINC01377(204351)	BACH1	./.	+/.	5:2973484	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
AC114763.1	5_8S_rRNA(2079),FP236383.3(121631)	-/.	./.	2:138480624	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000228043	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
U3(104497),GPC1(41723)	CHRNB4	./.	-/.	2:240393940	15:78672957	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000117971	.	.	upstream	downstream	duplicates(9),mismatches(15)	.	.	.
AC079760.2	RP1(43574),AC084834.1(152291)	+/.	./.	7:91493507	8:54915294	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000243144	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GRIA2(140759),AC093817.2(61897)	POU6F2	./.	+/.	4:157506834	7:39333348	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000106536	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNA1B	FP671120.4	+/.	+/.	9:137877970	21:8214788	CDS	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000148408	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC079760.2	AC008083.2(38156),PPIAP45(24437)	+/.	./.	7:91493507	12:47317177	exon	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000243144	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104042.1(863601),AC061997.1(140657)	AC104042.1(863642),AC061997.1(140616)	./.	./.	11:37561468	11:37561509	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
AL356157.3(30449),AL356157.1(45338)	FP671120.4	./.	+/.	10:44545870	21:8216865	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
WNT5A	AC105252.1(292282),AC079380.1(3756)	-/.	./.	3:55486456	4:133867490	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000114251	.	.	.	upstream	upstream	mismatches(1)	.	.	.
WWOX	WWOX	+/.	+/.	16:78539980	16:78540021	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000186153	ENSG00000186153	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
LINC01731	LINC01731	-/.	-/.	1:148280010	1:148280109	intron	intron	duplication/ITD	0	0	0	55	48	low	.	.	.	.	.	ENSG00000234283	ENSG00000234283	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
SLAMF6P1(2318),UHMK1(48367)	KIAA2012	./.	+/.	1:162448884	2:202083777	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182329	.	.	downstream	downstream	mismatches(1)	.	.	.
HYDIN2	RORA	+/.	-/.	1:146551982	15:60974094	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000069667	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC115220.1	LINC00470	+/+	-/-	7:64112668	18:1313979	exon	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000285544	ENSG00000132204	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MLLT10(12025),DNAJC1(893)	FRG1GP(150212),U6(2497001)	./.	./.	10:21755655	22:12776854	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	LAMA3	./.	+/.	3:103984260	18:23756906	intergenic	intron	translocation	0	0	0	83	0	low	.	.	.	.	.	.	ENSG00000053747	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
ITGA2B	TUBBP11(353350),RAP1BP2(78777)	-/-	./+	17:44384408	3:103984262	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000005961	.	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
ZNF638	FOXG1	+/.	+/.	2:71338690	14:28767737	intron	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000075292	ENSG00000176165	.	.	downstream	upstream	mismatches(1)	.	.	.
TOGARAM2	FP236383.3	+/.	+/.	2:29042539	21:8397830	intron	intron	translocation/3'-3'	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000189350	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MTCYBP16	H1-2(25919),HFE(4892)	-/-	./+	4:64608812	6:26082389	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251385	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SKP141(2096),SMC4P1(151947)	PLXNA4	./.	-/.	2:136392765	7:132611063	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000221866	.	.	upstream	upstream	mismatches(1)	.	.	.
UGT1A8	MTCYBP13(1410),MTRNR2L1(992)	+/.	./.	2:233640220	17:22522119	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242366	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	14:99796187	14:99796202	intron	intron	duplication/ITD	0	0	0	348	348	low	.	.	.	.	.	ENSG00000066629	ENSG00000066629	.	.	upstream	downstream	duplicates(291),low_entropy(25)	.	.	.
TAS1R2	TCERG1L	-/-	-/-	1:18854626	10:131237731	CDS	intron	translocation	0	0	0	1	0	low	.	.	Receptor_family_ligand_binding_region(54%)|FF_domain(100%)	.	.	ENSG00000179002	ENSG00000176769	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2W	AC106782.4(5723),CD2BP2(1714)	-/.	./.	8:73820102	16:30349059	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC106782.4(5722),CD2BP2(1715)	AC009161.1(206459),AC009110.1(32167)	./.	./.	16:30349058	16:62564205	intergenic	intergenic	duplication	0	0	0	2	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
POLR2J	FP671120.4	-/.	+/.	7:102473766	21:8214790	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000005075	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6-715P(145338),RNA5SP106(72577)	SULF2	./.	-/.	2:147640878	20:47757536	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000196562	.	.	upstream	upstream	mismatches(1)	.	.	.
RAB3IP	FP236383.3	+/.	+/.	12:69781318	21:8397824	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000127328	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
STK32A	LINC00871	+/.	+/.	5:147346629	14:46105954	intron	intron	translocation/5'-5'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000169302	ENSG00000258700	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC096773.1	MSRB2	-/.	+/.	4:127047967	10:23103183	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000250945	ENSG00000148450	.	.	upstream	downstream	mismatches(1)	.	.	.
RAB3IP	5_8S_rRNA(2086),FP236383.3(121624)	+/.	./.	12:69781318	21:8259019	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000127328	.	.	.	downstream	upstream	mismatches(1)	.	.	.
POLR2J	5_8S_rRNA(2086),FP236383.3(121624)	-/.	./.	7:102473766	21:8259019	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000005075	.	.	.	downstream	upstream	mismatches(1)	.	.	.
POLR2J	FP236383.3	-/.	+/.	7:102473766	21:8442054	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000005075	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093912.1(103817),AC073062.1(102173)	FP236383.3	./.	+/.	2:13435500	21:8441652	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
AC091515.1(60833),LINC02426(23840)	BCRP9(38369),NPM1P22(2713)	./.	./.	12:81929879	13:67829163	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022826.2	ABCD1	-/.	+/.	8:73820103	X:153725239	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000101986	.	.	upstream	upstream	mismatches(1)	.	.	.
RAB3IP	FP671120.4	+/.	+/.	12:69781318	21:8214790	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000127328	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DTX4	FP671120.4	+/+	+/+	11:59195361	21:8214790	CDS	intron	translocation	0	0	0	4	5263	low	.	.	Deltex_C-terminal_domain(26%),WWE_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|	.	.	ENSG00000110042	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
POLR2J	FP236383.3	-/.	+/.	7:102473766	21:8397824	intron	intron	translocation/3'-3'	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000005075	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DLGAP2	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	8:837041	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000198010	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ADCY1	FP475955.4	+/.	+/.	7:45682482	21:6897942	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	ENSG00000280172	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022826.2	IQCH	-/.	+/.	8:73820121	15:67310431	intron	intron	translocation/3'-3'	0	0	0	164	40	low	.	.	.	.	.	ENSG00000258677	ENSG00000103599	.	.	downstream	upstream	mismatches(2)	.	.	.
AK6P1(1980136),ZNF970P(1345493)	DNAAF1	./.	+/.	12:36230094	16:84163161	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000154099	.	.	downstream	upstream	mismatches(1)	.	.	.
CDCP1	FP236383.3	-/.	+/.	3:45092935	21:8400584	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000163814	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CRTAC1	RBFOX1	-/.	+/.	10:98026056	16:6603607	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000095713	ENSG00000078328	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
LINC01120	ABCA10	+/.	-/.	2:131405049	17:69221022	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000223631	ENSG00000154263	.	.	upstream	downstream	mismatches(1)	.	.	.
TMOD3	FP236383.3	+/.	+/.	15:51854578	21:8444040	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000138594	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM68	FP671120.4	-/.	+/.	8:55769425	21:8211456	intron	intron	translocation/3'-3'	0	0	0	7	1	low	.	.	.	.	.	ENSG00000167904	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	TTTY2	./.	+/.	14:100612119	Y:9750272	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000212855	.	.	upstream	upstream	mismatches(1)	.	.	.
AL157378.1(50260),AL078595.1(99819)	FP236383.3	./.	+/.	6:94244918	21:8400584	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP1(88888),EDN1(36474)	MAPKBP1	./.	+/.	6:12253887	15:41818881	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000137802	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022743.1(484045),AC083760.1(55590)	FP236383.3	./.	+/.	18:43983881	21:8400584	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	IL3RA	+/.	+/.	11:47233105	X:1354866	intron	intron	translocation/5'-5'	0	0	0	341	18	low	.	.	.	.	.	ENSG00000134574	ENSG00000185291	.	.	downstream	downstream	duplicates(3)	.	.	.
KYNU(33029),ARHGAP15(2500)	HIVEP1	./.	+/.	2:143088862	6:12040673	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000095951	.	.	downstream	upstream	mismatches(1)	.	.	.
LMCD1-AS1	SLCO5A1	-/.	-/.	3:8389579	8:69690369	intron	intron	translocation/3'-3'	0	0	0	0	53	low	.	.	.	.	.	ENSG00000227110	ENSG00000137571	.	.	downstream	downstream	duplicates(3),mismatches(3)	.	.	.
SGMS1	5_8S_rRNA(2078),FP236383.3(121632)	-/.	./.	10:50624032	21:8259011	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000198964	.	.	.	upstream	upstream	mismatches	.	.	.
U3(104497),GPC1(41723)	AP002371.1(8127),AP003072.4(53697)	./.	./.	2:240393940	11:93080158	intergenic	intergenic	translocation	0	0	0	357	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(11),mismatches(13)	.	.	.
AC108073.3	SLCO5A1	-/.	-/.	4:187943697	8:69690369	exon	intron	translocation/3'-3'	0	0	0	13	53	low	.	.	.	.	.	ENSG00000286641	ENSG00000137571	.	.	downstream	downstream	duplicates(5),mismatches(4)	.	.	.
AC108073.3	FP236383.3	-/.	+/.	4:187943697	21:8400584	exon	intron	translocation/3'-3'	0	0	0	13	7	low	.	.	.	.	.	ENSG00000286641	ENSG00000280441	.	.	downstream	upstream	duplicates(5),mismatches(4)	.	.	.
C7orf33	PRKX	+/.	-/.	7:148605538	X:3702477	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000170279	ENSG00000183943	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF3G	ZNF302(39542),AC020910.5(7359)	-/-	./-	19:10115740	19:34725939	CDS/splice-site	intergenic	duplication	0	0	0	0	0	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_G_(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(34%)|	.	.	ENSG00000130811	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ASCC3	BTAF1	-/.	+/.	6:100809844	10:91950169	intron	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000112249	ENSG00000095564	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ASAP1(79927),AC090987.1(71698)	SVIL2P	./.	+/.	8:130523601	10:30673673	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000234814	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2097),FP236383.3(121613)	UPRT	./.	+/.	21:8259030	X:75223386	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000094841	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
PRUNE2	AC090017.1(164865),DUX4L52(202265)	-/.	./.	9:76808399	12:61397802	intron	intergenic	translocation	0	0	0	6	5	low	.	.	.	.	.	ENSG00000106772	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DENND2B	INTS4	-/.	-/.	11:8868036	11:77886437	intron	intron	deletion	0	0	0	0	5	low	.	.	.	.	.	ENSG00000166444	ENSG00000149262	.	.	downstream	upstream	mismatches(1)	.	.	.
BTAF1	GAPDHP16(18528),AF127577.4(25053)	+/.	./.	10:91950169	21:14793790	intron	intergenic	translocation	0	0	0	14	5	low	.	.	.	.	.	ENSG00000095564	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02612	AC005863.1(4234),LINC02096(49637)	+/.	./.	2:150617538	17:14784920	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF638	FP236383.3	+/.	+/.	2:71338685	21:8392866	intron	intron	translocation	0	0	0	2	43	low	.	.	.	.	.	ENSG00000075292	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02040	MIR4713HG	+/.	+/.	3:65181557	15:51184193	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000243149	ENSG00000259240	.	.	downstream	downstream	mismatches(1)	.	.	.
BTAF1	AC103796.1	+/.	-/.	10:91950169	11:27781141	intron	intron	translocation/5'-5'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000095564	ENSG00000255496	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDK14	AC005258.1	+/.	+/.	7:90766754	19:2338920	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000058091	ENSG00000273734	.	.	upstream	downstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626663	X:18626676	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
BTAF1	SLC1A2	+/.	-/.	10:91950169	11:35290494	intron	intron	translocation/5'-5'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000095564	ENSG00000110436	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMC4	PHIP	-/-	-/-	19:54168416	6:78947959	exon	intron	translocation	0	0	0	4	0	low	.	.	|Bromodomain(32%)	.	.	ENSG00000167608	ENSG00000146247	.	.	upstream	downstream	homopolymer(1)	.	.	.
CHST15(269178),OAT(34527)	FP236383.3	./.	+/.	10:124362776	21:8442058	intergenic	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
CHST15(269178),OAT(34527)	FP671120.4	./.	+/.	10:124362776	21:8214794	intergenic	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
MDGA2	MT-RNR2	-/.	+/.	14:47533168	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000139915	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TFB1M	LAMA3	-/.	+/.	6:155280046	18:23756906	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000029639	ENSG00000053747	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
ZFYVE28	FP236383.3	-/.	+/.	4:2334332	21:8433639	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159733	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ABCC13	NPAS3	+/+	+/+	21:14362129	14:33799874	exon	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	ENSG00000243064	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	FP671120.3(3892),FP671120.7(551)	./.	./.	8:17155256	21:8254041	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SEPTIN8	AC015687.1	-/.	+/.	5:132788158	8:70990784	intron	intron	translocation/5'-5'	0	0	0	26	3	low	.	.	.	.	.	ENSG00000164402	ENSG00000285579	.	.	upstream	downstream	low_entropy	.	.	.
SAMD11	PVALB	+/+	-/+	1:939300	22:36802163	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	SAND_domain(100%)|	.	.	ENSG00000187634	ENSG00000100362	.	.	downstream	upstream	mismatches(1)	.	.	.
CDH8	CR392039.1(942),CR392039.3(8124)	-/.	./.	16:61831043	21:8988372	intron	intergenic	translocation	0	0	0	57	48	low	.	.	.	.	.	ENSG00000150394	.	.	.	downstream	upstream	mismatches(1)	.	.	.
THADA	NUDT12(105221),AC008505.1(212118)	-/.	./.	2:43464624	5:103668011	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000115970	.	.	.	upstream	downstream	mismatches(2)	.	.	.
CDK16	ERC2	+/+	-/-	X:47218046	3:55815739	exon	intron	translocation	0	0	0	1	0	low	.	.	|RIM-binding_protein_of_the_cytomatrix_active_zone(7%)	.	.	ENSG00000102225	ENSG00000187672	.	.	downstream	downstream	mismatches(1)	.	.	.
ANKRD30BL	RNY1P8(102917),AL162376.1(68854)	-/.	./.	2:132255319	13:73330177	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000163046	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP2K6	ZBTB7A	+/.	-/.	17:69472424	19:4051923	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108984	ENSG00000178951	.	.	upstream	upstream	mismatches(1)	.	.	.
ASCL2(150),C11orf21(24526)	LINC01495	./.	-/.	11:2271102	11:22480925	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255323	.	.	downstream	upstream	mismatches(1)	.	.	.
HYDIN2	LINC01266	+/.	+/.	1:146551982	3:690316	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000224957	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC016642.1	VENTXP2(41630),AL590681.1(46762)	-/.	./.	5:58801228	13:83949411	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000248475	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NAA11	AL356131.1(332863),MTRNR2L9(154)	-/.	./.	4:79311395	6:61574174	intron	intergenic	translocation	0	0	0	6	70	low	.	.	.	.	.	ENSG00000156269	.	.	.	downstream	downstream	mismatches	.	.	.
MT-RNR2	NAA11	+/+	-/-	MT:2479	4:79311395	exon	intron	translocation	0	0	0	.	6	low	.	.	.	.	.	ENSG00000210082	ENSG00000156269	.	.	downstream	downstream	uninteresting_contigs	.	.	.
LMCD1-AS1	KANK2(55),DOCK6(1449)	-/.	./.	3:8591032	19:11197846	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000227110	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LRP1B	LRP1B	-/.	-/.	2:141096622	2:141096691	intron	intron	duplication/ITD	0	0	0	12	11	low	.	.	.	.	.	ENSG00000168702	ENSG00000168702	.	.	upstream	downstream	low_entropy(1)	.	.	.
NAA11	RAMP3(65730),AC073968.2(16649)	-/.	./.	4:79311395	7:45252032	intron	intergenic	translocation	0	0	0	6	87	low	.	.	.	.	.	ENSG00000156269	.	.	.	downstream	downstream	mismatches	.	.	.
NBPF10	TMPO-AS1	-/.	-/.	1:146160779	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000271425	ENSG00000257167	.	.	downstream	downstream	mismatches(1)	.	.	.
TCF7L2	AP003390.1(4496),AP001994.1(77185)	+/.	./.	10:113117461	11:119744119	intron	intergenic	translocation	0	0	0	129	3583	low	.	.	.	.	.	ENSG00000148737	.	.	.	downstream	downstream	low_entropy	.	.	.
TET3	DHRS2(46906),AL160237.1(7252)	+/.	./.	2:74002355	14:23692545	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000187605	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48532),TPT1P1(55402)	./.	./.	2:128340558	21:31784939	intergenic	intergenic	translocation	0	0	0	35	220	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
UTS2(32674),TNFRSF9(29685)	AC011751.1(264539),SURF6P1(283748)	./.	./.	1:7886186	Y:16909078	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC6	OR4A6P(487048),TRIM48(49291)	-/.	./.	10:59900211	11:55212864	intron	intergenic	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000108091	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
FHDC1	AC073114.1	+/.	-/.	4:152965438	7:110419934	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000137460	ENSG00000226965	.	.	downstream	downstream	mismatches(1)	.	.	.
CNTN3	SIL1	-/.	-/.	3:74364752	5:139105650	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113805	ENSG00000120725	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
SIM1	AP003390.1(4430),AP001994.1(77251)	-/.	./.	6:100458060	11:119744053	intron	intergenic	translocation	0	0	0	21	3458	low	.	.	.	.	.	ENSG00000112246	.	.	.	downstream	downstream	mismatches	.	.	.
NOS1AP	FP236383.3	+/.	+/.	1:162359727	21:8394736	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000198929	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP003390.1(4494),AP001994.1(77187)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744117	14:78082967	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AL161793.2(79258),AC096675.1(15300)	SLC38A6	./.	+/.	1:204807364	14:61067403	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000139974	.	.	downstream	downstream	mismatches(1)	.	.	.
MCTP1	ZNF462	-/.	+/.	5:94947578	9:106864050	intron	intron	translocation	0	0	0	15	38	low	.	.	.	.	.	ENSG00000175471	ENSG00000148143	.	.	upstream	upstream	mismatches(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	AC008691.1	./.	+/.	1:7886187	5:159400708	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000249738	.	.	downstream	upstream	mismatches(1)	.	.	.
UTS2(32673),TNFRSF9(29686)	FAM13B	./.	-/.	1:7886185	5:137950247	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000031003	.	.	downstream	upstream	mismatches(1)	.	.	.
GALNS	FP671120.7(393),5_8S_rRNA(874)	-/.	./.	16:88834358	21:8255907	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000141012	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	WSCD1	./.	+/.	1:7886187	17:6061425	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000179314	.	.	downstream	upstream	mismatches(1)	.	.	.
MRPS18A	SMARCA1	-/.	-/.	6:43677494	X:129496989	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000096080	ENSG00000102038	.	.	downstream	downstream	mismatches(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	KHDRBS3	./.	+/.	1:7886187	8:135485568	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000131773	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRC34P2(14318),SRD5A3(18000)	TEX101	./.	+/.	4:55328242	19:43406229	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000131126	.	.	upstream	upstream	mismatches(1)	.	.	.
FHIT	AC116366.2	-/.	+/.	3:61042063	5:132496185	5'UTR	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	ENSG00000283782	.	.	downstream	downstream	homopolymer(1)	.	.	.
UTS2(32674),TNFRSF9(29685)	XG	./.	+/.	1:7886186	X:2808629	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000124343	.	.	downstream	downstream	mismatches(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	CASC9	./.	-/.	1:7886187	8:75135720	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000249395	.	.	downstream	downstream	mismatches(1)	.	.	.
UTS2(32672),TNFRSF9(29687)	LINC01951(119634),ARL2BPP6(175584)	./.	./.	1:7886184	5:175115147	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AP000255.1(48514),TPT1P1(55420)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784921	21:31785031	intergenic	intergenic	duplication	0	0	0	220	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
RPS23P5(103259),NENFP3(199733)	FP671120.4	./.	+/.	5:13353921	21:8214785	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	AL451165.2(953),AL451165.1(17190)	./.	./.	1:7886187	6:34698423	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003066.1	AC013565.1	+/.	+/.	11:96847852	15:89059781	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000254587	ENSG00000260123	.	.	downstream	downstream	mismatches(1)	.	.	.
GRIA4	KCNG2	+/.	+/.	11:105846948	18:79868056	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000152578	ENSG00000178342	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NRP1	BPI	-/.	+/.	10:33334709	20:38330895	5'UTR	intron	translocation/3'-3'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000099250	ENSG00000101425	.	.	downstream	upstream	mismatches(1)	.	.	.
THSD7B	KCNG2	+/.	+/.	2:137233972	18:79868056	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000144229	ENSG00000178342	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLEKHM2	FER1L5	+/.	+/.	1:15705823	2:96703483	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000116786	ENSG00000249715	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL606519.1(55732),HNRNPA1P64(20730)	LINC02741	./.	-/.	1:80430353	11:41542521	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000255388	.	.	upstream	downstream	mismatches(1)	.	.	.
GRM8	EEF1B2P6(1963),AC093106.1(920)	-/.	./.	7:126622457	7:131664587	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000179603	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DNMBP-AS1	PRPS1(58576),TSC22D3(2652)	+/.	./.	10:99948205	X:107710569	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227695	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
KLHL29	AL009177.1	+/.	+/.	2:23606218	6:14487262	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000119771	ENSG00000286277	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8393310	MT:2116	intron	exon	translocation/3'-3'	0	0	0	20	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
CMIP	FP671120.4	+/.	+/.	16:81678636	21:8211701	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153815	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC026904.2	BFSP1	-/-	-/-	8:48551630	20:17526167	exon	intron	translocation	0	0	0	0	0	low	.	.	|Intermediate_filament_protein(42%)	.	.	ENSG00000253688	ENSG00000125864	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	AP001823.1(3444),ELMOD1(744)	+/.	./.	10:104396370	11:107590347	intron	intergenic	translocation	0	0	0	558	1914	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
AC084337.2	FP236383.3	+/.	+/.	11:6496218	21:8439289	intron	intron	translocation/3'-3'	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
UGT1A7	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000244122	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479883	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
CFAP58	MIR4300HG	+/.	-/.	10:104396370	11:82143171	intron	intron	translocation/3'-3'	0	0	0	558	1095	low	.	.	.	.	.	ENSG00000120051	ENSG00000245832	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	MIR4300HG	+/.	-/.	10:104396370	11:82143165	intron	intron	translocation/3'-3'	0	0	0	558	1095	low	.	.	.	.	.	ENSG00000120051	ENSG00000245832	.	.	upstream	downstream	low_entropy	.	.	.
AL359232.1	TXNL4A	-/.	-/.	14:66508667	18:80033602	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000258561	ENSG00000141759	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	MIR4300HG	+/.	-/.	10:104396370	11:82143174	intron	intron	translocation/3'-3'	0	0	0	558	1095	low	.	.	.	.	.	ENSG00000120051	ENSG00000245832	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	AP003390.1(4492),AP001994.1(77189)	+/.	./.	10:104396370	11:119744115	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
FP236383.3	MYL6P1(8716),AGPAT3(165)	+/.	./.	21:8394736	21:43865058	intron	intergenic	inversion	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL359237.1	FP236383.3	-/.	+/.	14:87766771	21:8444310	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000258807	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	AP003390.1(4488),AP001994.1(77193)	+/.	./.	10:104396370	11:119744111	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
AC105916.1	GRID1	-/.	-/.	4:9586741	10:86184343	intron	intron	translocation/3'-3'	0	0	0	2	8	low	.	.	.	.	.	ENSG00000287117	ENSG00000182771	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ABBA01000935.2	KRT18P16(123476),LINC01170(298915)	-/.	./.	3:91399945	5:123760879	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000283544	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4482),AP001994.1(77199)	+/.	./.	10:104396370	11:119744105	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC00581	CDH8	-/.	-/.	6:21493479	16:61831043	intron	intron	translocation/3'-3'	0	0	0	0	57	low	.	.	.	.	.	ENSG00000280989	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4506),AP001994.1(77175)	+/.	./.	10:104396370	11:119744129	intron	intergenic	translocation	0	0	0	558	3002	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
SLC35E4	5_8S_rRNA(2091),FP236383.3(121619)	+/+	./+	22:30636548	21:8259024	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000100036	.	.	.	downstream	upstream	mismatches(2)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749066	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749069	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(895),IGHV4-39(2517)	./.	./.	14:106419121	14:106419194	intergenic	intergenic	duplication/ITD	0	0	0	192	192	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
POLE	OCA2	-/-	-/+	12:132650318	15:27980957	exon	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	ENSG00000104044	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL139383.1	FP236383.3	-/.	+/.	13:33517097	21:8441654	intron	intron	translocation/3'-3'	0	0	0	2	546	low	.	.	.	.	.	ENSG00000230490	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749072	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749078	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749078	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749081	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
HYDIN2	AL163195.1(11015),OR6S1(12690)	+/.	./.	1:146551982	14:20628006	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
FP671120.6	UBE2V1P9(93940),RNU6-555P(213392)	-/-	./+	21:8210562	X:90383843	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TMPRSS6(15798),IL2RB(332)	TMPRSS6(15852),IL2RB(278)	./.	./.	22:37125511	22:37125565	intergenic	intergenic	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC007389.1	TMEM198B	+/.	+/.	2:65711435	12:55832665	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000204929	ENSG00000182796	.	.	upstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749087	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
ACMSD	CCNT2-AS1	+/.	-/.	2:134845516	2:134845525	intron	intron	duplication/3'-3'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000224043	.	.	upstream	downstream	low_entropy(1)	.	.	.
MRPS36P5(24795),LINC02461(76134)	GSE1	./.	+/.	12:43079181	16:85260115	intergenic	intron	translocation	0	0	0	3	19	low	.	.	.	.	.	.	ENSG00000131149	.	.	downstream	upstream	mismatches(1)	.	.	.
GPS1	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	17:82055709	21:8255907	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169727	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL359962.3	SLC6A12	+/.	-/.	1:167455276	12:199333	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287218	ENSG00000111181	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
SLC6A12	SEC11C	-/.	+/.	12:199334	18:59139978	intron	CDS	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000111181	ENSG00000166562	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
SLC6A12	AC068473.4(4611),AC068473.1(22014)	-/.	./.	12:199335	18:79616914	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000111181	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
FP671120.6	FP236383.3	-/-	+/-	21:8210559	21:8394738	exon	intron	duplication/5'-5'	0	0	0	16	28	low	.	.	.	.	.	ENSG00000280800	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AC134312.5	KRT18P53(61509),SHOX(17483)	-/.	./.	16:88184470	X:606861	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261327	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009161.1(206454),AC009110.1(32172)	FP236383.3	./.	+/.	16:62564200	21:8397434	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF473	MT-RNR2	+/.	+/.	19:50045582	MT:2222	CDS	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000142528	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
ACOX1	ACOX1	-/.	-/.	17:75956918	17:75956927	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000161533	ENSG00000161533	.	.	upstream	downstream	low_entropy(1)	.	.	.
TSPAN11	GNL3L	+/.	+/.	12:30968231	X:54578338	intron	intron	translocation/5'-5'	0	0	0	8	42	low	.	.	.	.	.	ENSG00000110900	ENSG00000130119	.	.	downstream	downstream	duplicates(2),mismatches(5)	.	.	.
FFAR1	AC092819.2(4718),UBXN2B(134191)	+/+	./+	19:35353698	8:58277168	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(100%)|	.	.	ENSG00000126266	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LIN52(32941),VSX2(5273)	FP236383.3	./.	+/.	14:74234176	21:8433635	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS3	NALCN-AS1	-/.	+/.	4:72512747	13:100887372	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000156140	ENSG00000233009	.	.	upstream	downstream	duplicates(4),mismatches(4)	.	.	.
AC012409.2	FP236383.3	+/.	+/.	15:96174456	21:8398431	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000275443	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL512452.1	5_8S_rRNA(2096),FP236383.3(121614)	-/.	./.	13:67769886	21:8259029	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000287876	.	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
AC233702.2(14060),AC233702.1(6247)	CEACAM21	./.	+/.	17:21608240	19:41564259	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000007129	.	.	downstream	downstream	mismatches(1)	.	.	.
SFSWAP	KANK2(55),DOCK6(1449)	+/.	./.	12:131763492	19:11197846	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000061936	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SMG1	LINC02864	-/.	-/.	16:18892388	18:73168260	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157106	ENSG00000263711	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MFF-DT	ITGA2B	-/-	-/+	2:227268530	17:44384408	exon	exon	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236432	ENSG00000005961	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824760	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
PTH1R	LINC02339(168911),RAC1P8(208293)	+/+	./-	3:46898824	13:61596857	CDS	intergenic	translocation	0	0	0	1	0	low	.	.	7_transmembrane_receptor_(Secretin_family)(30%),Hormone_receptor_domain(100%)|	.	.	ENSG00000160801	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48502),TPT1P1(55432)	./.	./.	2:128340558	21:31784909	intergenic	intergenic	translocation	0	0	0	35	191	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
SLC5A7	AC104777.1	+/+	-/+	2:107986610	2:150617539	5'UTR	intron	deletion/5'-5'	0	0	0	0	45	low	.	.	.	.	.	ENSG00000115665	ENSG00000232359	.	.	downstream	upstream	mismatches(1)	.	.	.
SDK1	SLC28A1	+/.	+/.	7:3911338	15:84908598	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146555	ENSG00000156222	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SCNN1D	ADCY1	+/.	+/.	1:1287449	7:45682482	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162572	ENSG00000164742	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	AC025366.1(57830),AP005357.1(76639)	-/-	./+	11:9003964	8:110690224	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
AL138724.1	AC023906.5	+/+	-/+	6:17706647	15:52094810	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000272269	ENSG00000259712	.	.	downstream	upstream	mismatches(1)	.	.	.
GMDS	AC022535.1	-/.	-/.	6:1766539	10:4421314	intron	intron	translocation/3'-3'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000112699	ENSG00000230096	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396550	8:22396559	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
DLG2	EIF3CL	-/.	-/.	11:85484193	16:28391222	intron	intron	translocation	0	0	0	279	6	low	.	.	.	.	.	ENSG00000150672	ENSG00000205609	.	.	upstream	downstream	mismatches(1)	.	.	.
RNF43	FP671120.3(1492),FP671120.7(2951)	-/.	./.	17:58385559	21:8251641	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	.	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
MIR4300HG	GPC3	-/.	-/.	11:82143173	X:133661640	intron	intron	translocation/3'-3'	0	0	0	1095	143	low	.	.	.	.	.	ENSG00000245832	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396553	8:22396562	intron	intron	duplication/ITD	0	0	0	229	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(19),low_entropy(6)	.	.	.
AC109309.1	DDB2	+/.	+/.	11:3231584	11:47233103	intron	intron	inversion/3'-3'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000224513	ENSG00000134574	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
TBL1XR1	FP236383.3	-/.	+/.	3:177052293	21:8445485	intron	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	ENSG00000177565	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ATP11A	5_8S_rRNA(2083),FP236383.3(121627)	+/.	./.	13:112710652	21:8259016	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000068650	.	.	.	upstream	upstream	mismatches	.	.	.
IL1R1	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	2:102140326	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000115594	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
SLIT3	SMIM15P1(74037),PINCR(102561)	-/.	./.	5:169074016	X:43074433	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184347	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLIT3	BAG6	-/.	-/.	5:169074016	6:31647295	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000184347	ENSG00000204463	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	LINC01331(79561),ENC1(10869)	./.	./.	4:186749803	5:74616537	intergenic	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFTR	MBP(21716),AC100863.1(24707)	+/.	./.	7:117448925	18:77155399	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000001626	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00917(55011),AC092327.1(30131)	5_8S_rRNA(2087),FP236383.3(121623)	./.	./.	16:86404699	21:8259020	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(3)	.	.	.
MBP(21713),AC100863.1(24710)	SMIM15P1(74040),PINCR(102558)	./.	./.	18:77155396	X:43074436	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC105252.1(10289),AC079380.1(285749)	5_8S_rRNA(2096),FP236383.3(121614)	./.	./.	4:133585497	21:8259029	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
MTND1P22(314),AC107208.1(31973)	RPL24P9(223684),AC074035.1(449955)	./.	./.	4:155464137	X:4177245	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC017087.1(376618),AC018710.1(6863)	FP236383.3	./.	+/.	4:179062574	21:8397436	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	MGAT3	-/.	+/.	7:117610	22:39479096	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000128268	.	.	upstream	upstream	mismatches(1)	.	.	.
AC159540.1(2072),IGKV1OR2-9(15914)	FP236383.3	./.	+/.	2:97306223	21:8442051	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MALRD1	FP236383.3	+/.	+/.	10:19462346	21:8397828	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000204740	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MALRD1	5_8S_rRNA(2090),FP236383.3(121620)	+/.	./.	10:19462346	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000204740	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL512357.2(6022),AL512357.1(75587)	FP236383.3	./.	+/.	14:104300943	21:8396230	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462779	intron	intron	translocation/5'-5'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	mismatches(2)	.	.	.
MYT1L(85626),AC018685.2(220888)	AC018445.6(26773),AC068473.3(8847)	./.	./.	2:2417290	18:79567613	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
MALRD1	FP671120.4	+/.	+/.	10:19462346	21:8214794	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000204740	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFR2	5_8S_rRNA(2090),FP236383.3(121620)	-/.	./.	19:3805241	21:8259023	3'UTR	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000105278	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FHIT	MIR212(624),HIC1(3150)	-/.	./.	3:61042063	17:2051004	5'UTR	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
CEP104	ABLIM2(3392),GMPSP1(12197)	-/.	./.	1:3834912	4:8162224	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000116198	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00692(18212),RPEP2(123709)	FOLH1(43173),AC118942.1(53903)	./.	./.	3:25891960	11:49251811	intergenic	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ZFR2	FP671120.4	-/.	+/.	19:3805241	21:8214794	3'UTR	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000105278	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	DLG2	+/.	-/.	11:47233103	11:85484195	intron	intron	deletion/5'-5'	0	0	0	341	279	low	.	.	.	.	.	ENSG00000134574	ENSG00000150672	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
USP9YP6	USP9YP6	-/.	-/.	Y:17913557	Y:17913568	intron	intron	duplication/ITD	0	0	0	26	24	low	.	.	.	.	.	ENSG00000226116	ENSG00000226116	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214791	21:8401905	intron	intron	inversion/3'-3'	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683461	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
FP671120.4	RGN(25227),RNU12-2P(14130)	+/.	./.	21:8214396	X:47118541	intron	intergenic	translocation	0	0	0	540	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683468	15:81683477	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ZNF483	ZNF483	+/.	+/.	9:111561105	9:111561190	intron	intron	duplication/ITD	0	0	0	1	3	low	.	.	.	.	.	ENSG00000173258	ENSG00000173258	.	.	upstream	downstream	low_entropy(1)	.	.	.
SMARCAL1	GNA12(51167),CARD11(10667)	+/+	./+	2:216451038	7:2895475	CDS	intergenic	translocation	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|	.	.	ENSG00000138375	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683468	15:81683477	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PKN2-AS1	FP671120.4	-/.	+/.	1:87944416	21:8214784	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000237505	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683468	15:81683477	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749075	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96618115	21:8441663	5'UTR	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
ZNF347	ZNF347	-/-	-/-	19:53135340	19:53135353	3'UTR	3'UTR	duplication/ITD	0	0	0	2	2	low	.	.	KRAB_box(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000197937	ENSG00000197937	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8441663	MT:1791	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683468	15:81683477	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ABCB1	SYN3	-/.	-/.	7:87589088	22:32670892	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000085563	ENSG00000185666	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC021146.5	DLG2	-/.	-/.	4:68986258	11:85484188	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000249735	ENSG00000150672	.	.	upstream	upstream	duplicates(4),mismatches(3)	.	.	.
AC063949.2	AC063949.2	+/.	+/.	12:92447491	12:92447546	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000266923	ENSG00000266923	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650927	21:8444605	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL355674.1(96156),RORB-AS1(4817)	AL355674.1(96165),RORB-AS1(4808)	./.	./.	9:74480734	9:74480743	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143171	14:106419138	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC01320	FP236383.3	+/.	+/.	2:33767498	21:8444605	intron	intron	translocation	0	0	0	72	0	low	.	.	.	.	.	ENSG00000228262	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CLIP2	AL049651.1	+/+	-/-	7:74289563	20:23018126	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000106665	ENSG00000230492	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	3:96618115	21:8217335	5'UTR	intron	translocation/3'-3'	0	0	0	75	4	low	.	.	.	.	.	ENSG00000269028	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01320	FP236383.3	+/.	+/.	2:33767498	21:8400370	intron	intron	translocation	0	0	0	72	0	low	.	.	.	.	.	ENSG00000228262	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC021146.5	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	4:68986258	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000249735	.	.	.	upstream	upstream	duplicates(4),mismatches(3)	.	.	.
MTRNR2L12	5_8S_rRNA(1695),FP236383.3(122015)	-/.	./.	3:96618115	21:8258628	5'UTR	intergenic	translocation	0	0	0	75	44	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
GCC2	GRIK5	+/.	-/.	2:108492237	19:42042519	intron	intron	translocation	0	0	0	17	1	low	.	.	.	.	.	ENSG00000135968	ENSG00000105737	.	.	upstream	upstream	mismatches(1)	.	.	.
AL358335.2	YBX2P2	-/.	-/.	14:48480992	15:93066408	intron	exon	translocation/3'-3'	0	0	0	8	6	low	.	.	.	.	.	ENSG00000258751	ENSG00000258611	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC096719.1(2320),ADGRA3(12421)	AC103764.1(47896),RPL23AP56(49032)	./.	./.	4:22332650	8:134929795	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PDSS2	FP671120.3(3835),FP671120.7(608)	-/.	./.	6:107204806	21:8253984	intron	intergenic	translocation	0	1	0	0	0	low	.	.	.	.	.	ENSG00000164494	.	.	.	downstream	upstream	duplicates(1),min_support	.	.	.
LPP	AC016687.3	+/.	-/.	3:188587619	4:34005921	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000145012	ENSG00000250954	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02235	AP005436.1	+/.	-/.	8:81842457	11:88092427	intron	intron	translocation/3'-3'	0	0	0	67	1059	low	.	.	.	.	.	ENSG00000254689	ENSG00000255102	.	.	upstream	downstream	mismatches	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8397443	MT:1791	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
GCSIR	AL355836.3	+/.	-/.	2:230901078	14:101193602	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000232520	ENSG00000288245	.	.	upstream	downstream	mismatches(2)	.	.	.
CASC15	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	6:22499158	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000272168	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SMG7	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	1:183474871	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000116698	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UGT1A1	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000241635	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC009161.1(206459),AC009110.1(32167)	FP671120.4	./.	+/.	16:62564205	21:8214401	intergenic	intron	translocation	0	0	0	21	8	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	3:96618115	21:8214405	5'UTR	intron	translocation/3'-3'	0	0	0	75	8	low	.	.	.	.	.	ENSG00000269028	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8214405	MT:1791	intron	exon	translocation/3'-3'	0	0	0	8	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
FP671120.7	RNY1P8(102917),AL162376.1(68854)	-/-	./-	21:8254727	13:73330177	exon	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000281383	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262575	intron	intron	duplication	0	0	0	2363	2136	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8211687	21:8211698	intron	intron	duplication/ITD	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(29),low_entropy(1)	.	.	.
LINC02880(9169),HDAC2(2217)	AP003390.1(4497),AP001994.1(77184)	./.	./.	6:113930811	11:119744120	intergenic	intergenic	translocation	0	0	0	7	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
AC021146.5	FP236383.3	-/.	+/.	4:68986258	21:8441654	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000249735	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(3)	.	.	.
DLG2	MT-RNR2	-/.	+/.	11:85484197	MT:1791	intron	exon	translocation	0	0	0	279	.	low	.	.	.	.	.	ENSG00000150672	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
LINC02261(122976),IGBP1P5(179944)	AC013489.2(9288),LINC01586(7716)	./.	./.	4:27405201	15:88577850	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP003390.1(4503),AP001994.1(77178)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744126	14:106419138	intergenic	intergenic	translocation	0	0	0	3002	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
CBARP	BANF2(94732),AL035045.1(56760)	-/.	./.	19:1237715	20:17830603	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000099625	.	.	.	upstream	upstream	mismatches(1)	.	.	.
Y_RNA(11323),AL365184.2(29667)	GNL3L	./.	+/.	1:240709752	X:54578337	intergenic	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
COLEC11	AC084337.2	+/.	+/.	2:3605522	11:6496218	intron	intron	translocation	0	0	0	0	101	low	.	.	.	.	.	ENSG00000118004	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
LINC02123(10555),AC027343.1(3753)	AL162417.1	./.	-/.	5:7359226	9:133148048	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285245	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE4B	CCDC7	+/.	+/.	1:10159221	10:32589154	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000130939	ENSG00000216937	.	.	upstream	downstream	mismatches(1)	.	.	.
AL513324.1	MT-RNR2	-/-	+/+	10:117826272	MT:2132	exon/splice-site	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000263041	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CFAP58	AP003390.1(4484),AP001994.1(77197)	+/.	./.	10:104396370	11:119744107	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC02123(10555),AC027343.1(3753)	ZDHHC9(7294),AL034405.1(17861)	./.	./.	5:7359226	X:129851203	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626680	X:18626689	intron	intron	duplication/ITD	0	0	0	101	101	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
GTF2IRD1P1	NRP1	-/.	-/.	7:66824572	10:33334709	intron	5'UTR	translocation/3'-3'	0	0	0	8	21	low	.	.	.	.	.	ENSG00000230583	ENSG00000099250	.	.	downstream	downstream	mismatches(1)	.	.	.
NSMAF(94883),TOX(50676)	Z96074.1	./.	+/.	8:58754736	X:137574881	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000283692	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02123(10555),AC027343.1(3753)	RBL1	./.	-/.	5:7359226	20:37012920	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000080839	.	.	upstream	upstream	mismatches(1)	.	.	.
AL162417.1	NTN1	-/.	+/.	9:133148049	17:9230463	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285245	ENSG00000065320	.	.	upstream	downstream	mismatches(1)	.	.	.
RTKN2	DIP2A(27616),S100B(973)	-/.	./.	10:62268352	21:46597631	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000182010	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL162417.1	LINC02098(161794),ETS1(55526)	-/.	./.	9:133148049	11:128403235	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000285245	.	.	.	upstream	downstream	mismatches(1)	.	.	.
JAK1	LINC00607	-/.	-/.	1:64860339	2:215796354	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000162434	ENSG00000235770	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	LINC01020	-/-	+/-	11:9003964	5:4990796	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000215231	.	.	upstream	downstream	mismatches(1)	.	.	.
AC009133.6	AL162417.1	+/+	-/+	16:29813708	9:133148049	CDS	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000280893	ENSG00000285245	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR4435-2HG	INTS10	-/.	+/.	2:111097457	8:19842928	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172965	ENSG00000104613	.	.	upstream	upstream	mismatches(1)	.	.	.
C1orf35	EFS(108),IL25(6949)	-/-	./+	1:228102036	14:23365860	exon	intergenic	translocation	0	0	0	10	0	low	.	.	Multiple_myeloma_tumor-associated(100%)|	.	.	ENSG00000143793	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
MAPRE1P2(11497),AC093606.1(127083)	DOP1B	./.	+/.	4:33023243	21:36250159	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000142197	.	.	downstream	downstream	mismatches(1)	.	.	.
MFHAS1	AC097374.1	-/-	-/+	8:8893384	2:94903279	5'UTR	intron	translocation/5'-5'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000147324	ENSG00000259848	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.7(397),5_8S_rRNA(870)	FP236383.3	./.	+/.	21:8255911	21:8397441	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
ADAM10	SMG1	-/.	-/.	15:58611641	16:18892385	exon	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000137845	ENSG00000157106	.	.	downstream	upstream	duplicates(1)	.	.	.
WDR72	AC120498.8(2014),CACNA1H(2338)	-/.	./.	15:53648351	16:1150768	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000166415	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479892	X:133661638	intron	intron	translocation/3'-3'	0	0	0	2216	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8215506	21:8444191	intron	intron	inversion/3'-3'	0	0	0	2	214	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL035415.1(67836),AC099796.2(25721)	WDR72	./.	-/.	1:54488696	15:53648353	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000166415	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA2012	CDK9	+/.	+/.	2:202083777	9:127786322	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000182329	ENSG00000136807	.	.	downstream	downstream	mismatches(1)	.	.	.
TMIGD3	NACA	-/.	-/.	1:111491206	12:56725587	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000121933	ENSG00000196531	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CDCP1	FP236383.3	-/.	+/.	3:45092935	21:8444816	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000163814	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC12A8	LINC00343	-/.	+/.	3:125150511	13:105709164	intron	intron	translocation/3'-3'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	ENSG00000226620	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092170.1(239686),AC064856.1(115139)	LINC01399	./.	-/.	2:117421248	22:35143066	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000233080	.	.	upstream	upstream	mismatches(1)	.	.	.
MPI	AL033529.1	+/+	+/-	15:74895901	1:32507193	exon	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	Phosphomannose_isomerase_type_I_C-terminal(58%)|	.	.	ENSG00000178802	ENSG00000254553	.	.	downstream	downstream	mismatches(1)	.	.	.
RGMB-AS1	TSPY12P(668),AC007274.2(295)	-/.	./.	5:98771438	Y:7690216	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL591004.1(13753),AL365503.1(232113)	PRKN	./.	-/.	6:67224233	6:162005426	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000185345	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	RALGAPA1	+/.	-/.	2:32916401	14:35617652	intron	intron	translocation/3'-3'	0	0	0	19	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000174373	.	.	upstream	downstream	mismatches	.	.	.
MON1B	TBXA2R	+/+	-/-	16:77194711	19:3603176	CDS	intron	translocation	0	0	0	10	0	low	.	.	First_Longin_domain_of_FUZ__MON1_and_HPS1(100%),Second_Longin_domain_of_FUZ__MON1_and_HPS1(8%)|7_transmembrane_receptor_(rhodopsin_family)(100%)	.	.	ENSG00000103111	ENSG00000006638	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MON1B	VSTM4	+/+	-/-	16:77194712	10:49076006	CDS	intron	translocation	0	0	0	10	0	low	.	.	First_Longin_domain_of_FUZ__MON1_and_HPS1(100%),Second_Longin_domain_of_FUZ__MON1_and_HPS1(9%)|	.	.	ENSG00000103111	ENSG00000165633	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MROH7-TTC4	MROH7-TTC4	+/.	+/.	1:54736179	1:54736190	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000271723	ENSG00000271723	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8444605	MT:1791	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
SNORD3H(207161),AP002982.1(58564)	FP236383.3	./.	+/.	8:97565639	21:8397822	intergenic	intron	translocation	0	0	0	4	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104500),GPC1(41720)	CTNND2	./.	-/.	2:240393943	5:11535781	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000169862	.	.	upstream	downstream	mismatches(1)	.	.	.
TMIGD3	PRKN	-/.	-/.	1:111491206	6:162005426	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000121933	ENSG00000185345	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IGBP1P2	AL158064.1	-/-	-/-	17:58661512	13:80074603	CDS	exon	translocation	0	0	0	0	3	low	.	.	TAP42-like_family(5%)|	.	.	ENSG00000266826	ENSG00000284196	.	.	upstream	downstream	mismatches(1)	.	.	.
C1orf35	AL954722.1(233863)	-/-	./+	1:228102036	X:19880	exon	intergenic	translocation	0	0	0	10	1	low	.	.	Multiple_myeloma_tumor-associated(100%)|	.	.	ENSG00000143793	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
BANF2(94730),AL035045.1(56762)	ADNP	./.	-/.	20:17830601	20:50930467	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101126	.	.	upstream	downstream	mismatches(1)	.	.	.
TAB2(11981),ZC3H12D(23201)	TAB2(11990),ZC3H12D(23192)	./.	./.	6:149423594	6:149423603	intergenic	intergenic	duplication/ITD	0	0	0	86	86	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
AL392088.1(25244),FAM102B(25602)	MTRNR2L7	./.	-/.	1:108534487	10:37602886	intergenic	5'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000256892	.	.	downstream	downstream	mismatches(1)	.	.	.
RAB2A	TCERG1L	+/.	-/.	8:60532010	10:131142216	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000104388	ENSG00000176769	.	.	upstream	upstream	mismatches(1)	.	.	.
C1orf35	AL954722.1(21041)	-/-	./+	1:228102036	X:232702	exon	intergenic	translocation	0	0	0	10	0	low	.	.	Multiple_myeloma_tumor-associated(100%)|	.	.	ENSG00000143793	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
PTPRN2	HOXC6	-/.	+/.	7:158244937	12:54029878	intron	CDS	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000155093	ENSG00000197757	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5800),MAP7D2(15754)	+/.	./.	21:8444140	X:19990959	intron	intergenic	translocation	0	0	0	19	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PTPRN2	AC016816.1(400821),MIR378C(24361)	-/.	./.	7:158244937	10:130938227	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155093	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL133304.3	FP236383.3	+/.	+/.	14:36002552	21:8389581	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258342	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
C1orf35	AC016816.1(400820),MIR378C(24362)	-/-	./-	1:228102036	10:130938226	exon	intergenic	translocation	0	0	0	10	0	low	.	.	Multiple_myeloma_tumor-associated(100%)|	.	.	ENSG00000143793	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	11:121765654	11:121765669	intron	intron	duplication/ITD	0	0	0	17	15	low	.	.	.	.	.	ENSG00000286044	ENSG00000286044	.	.	upstream	downstream	duplicates(5),low_entropy(7)	.	.	.
SYT2	CSAG3	-/.	+/.	1:202691724	X:152758812	intron	intron	translocation	0	0	0	22	11	low	.	.	.	.	.	ENSG00000143858	ENSG00000268916	.	.	upstream	upstream	mismatches	.	.	.
HYDIN2	LIN7A	+/.	-/.	1:146551982	12:80891221	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000111052	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
HTR1E	DLG2	+/.	-/.	6:86956265	11:85484188	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000168830	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	HECW1	./.	+/.	3:137274346	7:43336127	intergenic	intron	translocation	0	0	0	71	25	low	.	.	.	.	.	.	ENSG00000002746	.	.	upstream	upstream	mismatches	.	.	.
FP671120.4	5_8S_rRNA(18971),CT867976.1(205814)	+/.	./.	21:8217040	22:11268930	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC003975.1(423134),AC000372.1(22004)	FP236383.3	./.	+/.	7:126356966	21:8441450	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	3:64736205	3:64736268	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000241684	ENSG00000241684	.	.	upstream	downstream	duplicates(4),low_entropy(2),merge_adjacent	.	.	.
SYT2	CLCN5	-/.	+/.	1:202691724	X:50007380	intron	intron	translocation	0	0	0	22	4	low	.	.	.	.	.	ENSG00000143858	ENSG00000171365	.	.	upstream	upstream	mismatches	.	.	.
MON1B	AC022414.1	+/+	+/+	16:77194712	5:77306564	CDS	intron	translocation	0	0	0	10	0	low	.	.	First_Longin_domain_of_FUZ__MON1_and_HPS1(100%),Second_Longin_domain_of_FUZ__MON1_and_HPS1(9%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%),PAS_domain(100%)	.	.	ENSG00000103111	ENSG00000284762	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNU6-1312P(86506),CRLF3P3(286792)	AC013489.2(9288),LINC01586(7716)	./.	./.	2:83744348	15:88577850	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
UTRN	CEMIP2(21729),ABHD17B(24033)	+/.	./.	6:144823828	9:71838419	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152818	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL445466.1(192395),LINC02817(3464)	RPL6P21(23501),DGKB(50168)	./.	./.	1:221326616	7:14094881	intergenic	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL035078.4	INTS4	+/.	-/.	11:31981345	11:77886439	intron	intron	deletion/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000285283	ENSG00000149262	.	.	downstream	upstream	mismatches(1)	.	.	.
SYT2	LEMD1-DT(27310),CDK18(8262)	-/.	./.	1:202691724	1:205496334	intron	intergenic	inversion	0	0	0	22	9	low	.	.	.	.	.	ENSG00000143858	.	.	.	upstream	upstream	mismatches	.	.	.
SYT2	ABCC4	-/.	-/.	1:202691724	13:95029272	intron	intron	translocation	0	0	0	22	7	low	.	.	.	.	.	ENSG00000143858	ENSG00000125257	.	.	upstream	downstream	mismatches	.	.	.
RALGDS	NTN1	-/.	+/.	9:133148049	17:9230463	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160271	ENSG00000065320	.	.	upstream	downstream	mismatches(1)	.	.	.
FRK	ABCB1	-/.	-/.	6:115958262	7:87589088	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111816	ENSG00000085563	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC128709.3(26249),LINC02012(11908)	LINC02745	./.	-/.	3:197493354	11:42029389	intergenic	intron	translocation	0	0	0	4	9	low	.	.	.	.	.	.	ENSG00000255300	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NDUFB9P3(84563),LINC01608(5539)	AC005258.1	./.	+/.	8:110894457	19:2338920	intergenic	intron	translocation	0	0	0	30	15	low	.	.	.	.	.	.	ENSG00000273734	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNH2	OPCML	-/-	-/+	7:150947792	11:132846099	CDS	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	ENSG00000183715	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GALNT2	AC078980.1	+/.	+/.	1:230276538	3:109700822	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000242029	.	.	upstream	upstream	mismatches(2)	.	.	.
HBB	GLIS2	-/.	+/.	11:5225536	16:4337545	3'UTR	3'UTR	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000126603	.	.	downstream	upstream	mismatches(1)	.	.	.
GALNT2	LINC01205	+/.	+/.	1:230276538	3:109700822	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000228980	.	.	upstream	upstream	mismatches(2)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479917	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AC008269.1	IL15(110187),INPP4B(178986)	+/.	./.	2:206862123	4:141844174	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	.	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8214404	MT:2448	intron	exon	translocation/3'-3'	0	0	0	8	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HIVEP3	AC078980.1	-/.	+/.	1:41533153	3:109700822	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000127124	ENSG00000242029	.	.	upstream	upstream	mismatches(2)	.	.	.
AC097480.2(49410),RN7SL101P(60943)	AC116362.1	./.	-/.	4:28650255	5:125774671	intergenic	intron	translocation	0	0	0	6	1	low	.	.	.	.	.	.	ENSG00000248752	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
HIVEP3	LINC01205	-/.	+/.	1:41533153	3:109700822	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000127124	ENSG00000228980	.	.	upstream	upstream	mismatches(2)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749066	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC078980.1	PHF2P2	+/.	-/.	3:109700822	13:19047545	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000226057	.	.	upstream	upstream	mismatches(2)	.	.	.
RABGAP1L	RPS27AP20(98222),BX890604.1(1706)	+/.	./.	1:174642719	X:3815822	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000152061	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FAT1(23083),AC108865.1(141164)	OPCML	./.	-/.	4:186749805	11:132846099	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000183715	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01205	PHF2P2	+/.	-/.	3:109700822	13:19047545	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000226057	.	.	upstream	upstream	mismatches(2)	.	.	.
AL645474.1(51054),AL136372.2(247853)	LINC01205	./.	+/.	1:187765789	3:109700823	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000228980	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AC008014.1(15861),AC079906.1(77859)	./.	./.	2:240393940	12:46892645	intergenic	intergenic	translocation	0	0	0	357	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),mismatches(16)	.	.	.
KCNMB2-AS1	AC117457.1	-/.	+/.	3:178655093	3:178655110	intron	intron	duplication/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000237978	ENSG00000275163	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	IGHVIII-38-1(831),IGHV4-39(2581)	-/.	./.	10:104479914	14:106419130	intron	intergenic	translocation	0	0	0	1761	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC02794	MGAT4C	+/.	-/.	1:48055750	12:86600963	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226133	ENSG00000182050	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4479),AP001994.1(77202)	+/.	./.	10:104396370	11:119744102	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
MFSD9	ARL11(4830),EBPL(21972)	-/.	./.	2:102719365	13:49638702	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000135953	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL035079.1(18426),CIR1P3(7505)	OR5D14(14701),OR5L1(166)	./.	./.	11:34423375	11:55811201	intergenic	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC12A2	OR5D14(14701),OR5L1(166)	+/.	./.	5:128132315	11:55811201	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000064651	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	ABCC4	./.	-/.	3:137274346	13:95029272	intergenic	intron	translocation	0	0	0	71	7	low	.	.	.	.	.	.	ENSG00000125257	.	.	upstream	downstream	mismatches	.	.	.
AL035079.1(18426),CIR1P3(7505)	SLC1A2	./.	-/.	11:34423375	11:35290493	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000110436	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
Metazoa_SRP(49193),PAX2(19401)	FP671120.4	./.	+/.	10:100716202	21:8211701	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
SLC12A2	SLC1A2	+/.	-/.	5:128132315	11:35290493	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000064651	ENSG00000110436	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNAJC22(8928),SPATS2(110)	ADAMTS5(58793),GPX1P2(117463)	./.	./.	12:49366474	21:27025881	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
LINC02646(14600),Y_RNA(7313)	OR52K3P	./.	+/.	10:130497793	11:4475677	intergenic	exon	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000225101	.	.	upstream	upstream	mismatches(1)	.	.	.
TFDP2	PPP1R12A	-/.	-/.	3:141996022	12:79875396	intron	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	ENSG00000114126	ENSG00000058272	.	.	downstream	upstream	mismatches(1)	.	.	.
AL136366.1	FP236383.3	+/.	+/.	9:14346299	21:8442145	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000225472	ENSG00000280441	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
AC016954.1	PISD	-/-	-/-	12:32228004	22:31628094	exon	5'UTR	translocation	0	0	0	0	0	low	.	.	|Phosphatidylserine_decarboxylase(100%)	.	.	ENSG00000258134	ENSG00000241878	.	.	upstream	downstream	mismatches(1)	.	.	.
H3P28(100180),AL355297.2(11600)	LIPI	./.	-/.	6:156762617	21:14210200	intergenic	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	.	ENSG00000188992	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FXNP1(22676),NRXN3(87419)	FXNP1(22775),NRXN3(87320)	./.	./.	14:78082954	14:78083053	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(3),merge_adjacent	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	12:105046145	12:105046196	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000136010	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
SLC12A8	AC004875.1	-/.	-/.	3:125150511	7:121665299	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	ENSG00000227743	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
H3P28(100180),AL355297.2(11600)	AC004875.1	./.	-/.	6:156762617	7:121665299	intergenic	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	.	ENSG00000227743	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01320	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	2:33767489	21:8258619	intron	intergenic	translocation	0	0	0	72	543	low	.	.	.	.	.	ENSG00000228262	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
WWC2	LINC01287(16430),PAXBP1P1(19014)	+/+	./+	4:183319654	7:153430415	3'UTR	intergenic	translocation	0	0	0	0	14	low	.	.	WW_domain(100%)|	.	.	ENSG00000151718	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC024587.1	ANO2	+/+	-/-	5:107725997	12:5566080	exon	intron	translocation	0	0	0	0	0	low	.	.	|Calcium-activated_chloride_channel(10%)	.	.	ENSG00000248827	ENSG00000047617	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8447412	21:8447427	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	low_entropy(1)	.	.	.
ROCK2	SPECC1L-ADORA2A	-/.	+/.	2:11234942	22:24299648	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134318	ENSG00000258555	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC12A8	LINC01449(493478),INHBA(40183)	-/.	./.	3:125150511	7:41626985	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01776	ALOX15(16236),PELP1(11244)	+/.	./.	1:98227890	17:4658530	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000226053	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
DENND1A	FP236383.3	-/.	+/.	9:123387695	21:8392940	intron	intron	translocation/3'-3'	0	0	0	0	32	low	.	.	.	.	.	ENSG00000119522	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(4)	.	.	.
AP003390.1(4363),AP001994.1(77318)	AP003390.1(4377),AP001994.1(77304)	./.	./.	11:119743986	11:119744000	intergenic	intergenic	duplication/ITD	0	0	0	1583	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683468	15:81683477	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RNA5SP167(15370),RNU6-1230P(11331)	XRCC6P2(65223),MAMLD1(63303)	./.	./.	4:149923045	X:150298119	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
H3P28(100180),AL355297.2(11600)	LINC01449(493478),INHBA(40183)	./.	./.	6:156762617	7:41626985	intergenic	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TUBBP11(353354),RAP1BP2(78773)	DLG2	./.	-/.	3:103984266	11:85484188	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
TFB1M	TBXT	-/.	-/.	6:155280047	6:166166388	intron	intron	inversion/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000029639	ENSG00000164458	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AP003390.1(4499),AP001994.1(77182)	FRMD5(93118),GOLM2(330)	./.	./.	11:119744122	15:44288389	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
SLC12A8	MCM4(993),RNU6-519P(261)	-/.	./.	3:125150511	8:47979153	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC12A8	TRPC7	-/.	-/.	3:125150511	5:136286731	intron	intron	translocation/3'-3'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	ENSG00000069018	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL669970.2(4939),COL5A1(82967)	AP005264.4	./.	+/.	9:134558836	18:12215240	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000267733	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC12A8	AL136537.1(42492),MIR4801(65569)	-/.	./.	3:125150511	4:37176341	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683468	15:81683477	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AP001823.1(3424),ELMOD1(764)	AP001823.1(3523),ELMOD1(665)	./.	./.	11:107590327	11:107590426	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL583804.1	H3P28(100180),AL355297.2(11600)	-/.	./.	1:166401557	6:156762617	intron	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000225325	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	LINC02246	./.	-/.	14:100612119	21:14845956	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000281903	.	.	upstream	upstream	mismatches(1)	.	.	.
TMCC2(16210),NUAK2(221)	PCAT1	./.	+/.	1:205301842	8:127115208	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000253438	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	FIBIN(9775),BBOX1(33863)	./.	./.	2:240393940	11:27006862	intergenic	intergenic	translocation	0	0	0	357	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),mismatches(16)	.	.	.
HULC(70407),OFCC1(231570)	NDUFAF4(8228),RN7SL509P(8580)	./.	./.	6:9364540	6:96906119	intergenic	intergenic	inversion	0	0	0	0	12	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ERI3	AC006288.1(46016),LINC01613(364912)	-/.	./.	1:44320094	9:119570141	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC026898.1(1903),SMAD2(103309)	PLCB4	./.	+/.	18:47705648	20:9168924	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101333	.	.	upstream	upstream	mismatches(1)	.	.	.
AUTS2	AL162417.1	+/.	-/.	7:69895558	9:133148049	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000158321	ENSG00000285245	.	.	downstream	upstream	mismatches(1)	.	.	.
HIVEP2	ADGRG2	-/.	-/.	6:142946393	X:19046390	intron	intron	translocation/3'-3'	0	0	0	63	1	low	.	.	.	.	.	ENSG00000010818	ENSG00000173698	.	.	downstream	downstream	low_entropy(1)	.	.	.
AL136131.1(9448),AL136131.2(6587)	SLC6A12	./.	-/.	6:43716199	12:199333	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111181	.	.	upstream	upstream	mismatches(1)	.	.	.
SH3TC2	SLCO5A1	-/.	-/.	5:149025829	8:69690369	3'UTR	intron	translocation/3'-3'	0	0	0	0	53	low	.	.	.	.	.	ENSG00000169247	ENSG00000137571	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	CDK14	./.	+/.	2:240393940	7:90766754	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000058091	.	.	upstream	upstream	duplicates(9),mismatches(12)	.	.	.
AC020741.1	U3(104497),GPC1(41723)	-/-	./+	4:61428174	2:240393940	exon	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	ENSG00000205682	.	.	.	upstream	upstream	duplicates(11),mismatches(13)	.	.	.
U3(104497),GPC1(41723)	AC084759.3(20),AC084759.2(31977)	./.	./.	2:240393940	15:53914732	intergenic	intergenic	translocation	0	0	0	357	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),mismatches(16)	.	.	.
RP1(43574),AC084834.1(152291)	RGS6	./.	+/.	8:54915294	14:72111284	intergenic	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	.	ENSG00000182732	.	.	downstream	downstream	mismatches(1)	.	.	.
EEF1B2P2(28127),LINC02219(1856)	SPECC1	./.	+/.	5:68188020	17:20090311	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000128487	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
ACAP3	AC108452.1(329493),AC100781.1(333303)	-/.	./.	1:1308298	18:38321906	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131584	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR3148(37078),MAP2K1P1(33287)	DHX8	./.	+/.	8:29994426	17:43546409	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000067596	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ROBO2	ACTL10	+/.	+/.	3:76477693	20:33667506	intron	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000185008	ENSG00000288649	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDC7	AC004980.1(14730),AC004980.2(7689)	+/+	./-	1:91511821	7:76642712	CDS/splice-site	intergenic	translocation	0	0	0	0	1	low	.	.	Protein_kinase_domain(39%)|	.	.	ENSG00000097046	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KMT2C	THRAP3P2(6696),SLCO3A1(103057)	-/.	./.	7:152384548	15:91750651	intron	intergenic	translocation	0	0	0	177	21	low	.	.	.	.	.	ENSG00000055609	.	.	.	upstream	upstream	mismatches	.	.	.
AC004980.1(14730),AC004980.2(7689)	ABCA10	./.	-/.	7:76642712	17:69221022	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000154263	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS7P4(20383),COX6B1P7(18950)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	1:68263438	21:8258619	intergenic	intergenic	translocation	0	0	0	3	543	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
AC004852.2(134346),GAPDHP68(290775)	AC084816.1	./.	+/.	7:9324203	12:22884940	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000256995	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP45	KIF5C	-/.	+/.	1:159873084	2:148915314	CDS	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000213085	ENSG00000168280	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
SSX2IP(89151),AC104169.1(5473)	ZBTB45	./.	-/.	1:84779954	19:58519968	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000119574	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021212	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021207	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(2)	.	.	.
NGB	GPC3	-/.	-/.	14:77269724	X:133661640	intron	intron	translocation	0	0	0	87	143	low	.	.	.	.	.	ENSG00000165553	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
HBB	ZBTB7A	-/.	-/.	11:5225537	19:4065051	3'UTR	intron	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000178951	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL591122.1(12914),ZBTB40(49442)	FP671120.7(393),5_8S_rRNA(874)	./.	./.	1:22379396	21:8255907	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KMT2C	AC025580.2	-/.	+/.	7:152384544	15:45463038	intron	intron	translocation/5'-5'	0	0	0	177	71	low	.	.	.	.	.	ENSG00000055609	ENSG00000259354	.	.	upstream	downstream	mismatches	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021214	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(16),merge_adjacent	.	.	.
KDM4C	GRIN2A	+/.	-/.	9:7086289	16:10042906	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	ENSG00000183454	.	.	upstream	upstream	mismatches(1)	.	.	.
CEP128	GTF2A1	-/.	-/.	14:80955361	14:81220357	intron	intron	deletion/read-through	0	0	0	1	1	low	.	.	.	.	.	ENSG00000100629	ENSG00000165417	.	.	downstream	upstream	low_entropy(1)	.	.	.
SYNDIG1	FP671120.4	+/.	+/.	20:24618126	21:8211701	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000101463	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
HIVEP2	FP671120.4	-/.	+/.	6:142946387	21:8211699	intron	intron	translocation/3'-3'	0	0	0	63	136	low	.	.	.	.	.	ENSG00000010818	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
HGS	FP236383.3	+/.	+/.	17:81688568	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000185359	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
HGS	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	17:81688568	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000185359	.	.	.	upstream	upstream	mismatches(2)	.	.	.
HGS	FP236383.3	+/.	+/.	17:81688568	21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000185359	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
SLC35E4	FP236383.3	+/+	+/+	22:30636548	21:8442059	CDS	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000100036	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257427	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
SLC35E4	FP236383.3	+/+	+/+	22:30636548	21:8397829	CDS	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000100036	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
PAXBP1(72),C21orf62-AS1(236)	PAXBP1(81),C21orf62-AS1(227)	./.	./.	21:32771864	21:32771873	intergenic	intergenic	duplication/ITD	0	0	0	494	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP671120.4(3818),FP671120.10(3890)	CT867976.1(150830),AC138776.1(197050)	./.	./.	21:8231464	22:11630473	intergenic	intergenic	translocation	0	0	0	38	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4(935),FP671120.10(6773)	FP236383.3	./.	+/.	21:8228581	21:8438935	intergenic	intron	inversion	0	0	0	0	159	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683455	15:81683470	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(25),low_entropy(11)	.	.	.
FP326651.1(2009),Y_RNA(175003)	AP001599.1	./.	+/.	9:65398381	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
SH3TC2	FP236383.3	-/.	+/.	5:149025829	21:8444816	3'UTR	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000169247	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.6	FP236383.3(3810),FP236383.11(3718)	-/-	./-	21:8210559	21:8458602	exon	intergenic	duplication	0	0	0	16	17	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	Z96074.1(205442),RN7SKP31(210129)	-/.	./.	5:80651216	X:138187222	intron	intergenic	translocation	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	duplicates(6),mismatches(1)	.	.	.
AC093627.22	RTKN2	-/.	-/.	7:117609	10:62268356	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000287883	ENSG00000182010	.	.	upstream	upstream	mismatches(1)	.	.	.
DPP6	AC064801.2	+/.	+/.	7:154797635	18:62551948	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130226	ENSG00000279236	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC27P1(3882),AC097532.1(18871)	THSD7A	./.	-/.	2:132266924	7:11697988	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000005108	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00326	NPAS3	+/.	+/.	6:133103778	14:33799874	intron	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	ENSG00000231023	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
PRKCZ	FP236383.3	+/.	+/.	1:2178891	21:8397830	intron	intron	translocation	0	0	0	2	1126	low	.	.	.	.	.	ENSG00000067606	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDC27P1(3882),AC097532.1(18871)	VSTM4	./.	-/.	2:132266924	10:49021808	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000165633	.	.	downstream	upstream	mismatches(1)	.	.	.
AC087482.1	MTRNR2L1	-/.	+/.	15:67040912	17:22523879	intron	5'UTR	translocation	0	0	0	8	4	low	.	.	.	.	.	ENSG00000259347	ENSG00000256618	.	.	upstream	upstream	mismatches(1)	.	.	.
NAALADL2-AS3	AC002460.2	-/.	+/.	3:175089640	4:148834330	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000230292	ENSG00000287292	.	.	upstream	downstream	mismatches(1)	.	.	.
ABR	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	17:1124172	21:8259010	intron	intergenic	translocation	0	0	0	8	5911	low	.	.	.	.	.	ENSG00000159842	.	.	.	upstream	upstream	mismatches	.	.	.
FP326651.1(2042),Y_RNA(174970)	DDB2	./.	+/.	9:65398414	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC2A9	FP236383.3	-/.	+/.	4:9774828	21:8444597	intron	intron	translocation/3'-3'	0	0	0	15	4	low	.	.	.	.	.	ENSG00000109667	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	CT867976.1(150830),AC138776.1(197050)	+/.	./.	21:8414040	22:11630473	intron	intergenic	translocation	0	0	0	27	8	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CSK(8121),LMAN1L(1397)	AP001046.1(3702),SIK1(44215)	./.	./.	15:74811319	21:43370268	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.6	CDC27P1(4281),AC097532.1(18472)	-/-	./-	21:8210558	2:132267323	exon	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DMRTC1B	PABPC1L2B	+/+	+/+	X:72777490	X:73004376	intron	3'UTR	deletion/read-through	0	0	0	1	1	low	.	.	.	.	.	ENSG00000184911	ENSG00000184388	.	.	downstream	upstream	low_entropy(1)	.	.	.
FP671120.7(395),5_8S_rRNA(872)	CT867976.1(150830),AC138776.1(197050)	./.	./.	21:8255909	22:11630473	intergenic	intergenic	translocation	0	0	0	74	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4(5324),FP671120.10(2384)	FP236383.3	./.	+/.	21:8232970	21:8438935	intergenic	intron	inversion	0	0	0	0	159	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC022826.2	MT-RNR2	-/.	+/.	8:73820102	MT:1698	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000258677	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL009178.3	KIAA1217	+/+	+/+	6:167796659	10:23941993	exon	intron	translocation	0	0	0	0	0	low	.	.	|Actin_interacting_protein_3(100%)	.	.	ENSG00000285212	ENSG00000120549	.	.	downstream	upstream	mismatches(1)	.	.	.
AL033504.1	AL033504.1	+/.	+/.	6:147790729	6:147790827	intron	intron	duplication/ITD	0	0	0	18	25	low	.	.	.	.	.	ENSG00000227681	ENSG00000227681	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
VLDLR	FP236383.3	+/+	+/+	9:2656061	21:8398431	3'UTR	intron	translocation	0	0	0	8	0	low	.	.	Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%)|	.	.	ENSG00000147852	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
SLC34A1	DLC1	+/.	-/.	5:177386837	8:13276801	intron	5'UTR	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000131183	ENSG00000164741	.	.	upstream	downstream	mismatches(1)	.	.	.
GPR39	LINC02098(161794),ETS1(55526)	+/.	./.	2:132557876	11:128403235	intron	intergenic	translocation	0	0	0	10	8	low	.	.	.	.	.	ENSG00000183840	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL391832.4	GPR39	-/.	+/.	1:234906873	2:132557876	intron	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000286263	ENSG00000183840	.	.	upstream	downstream	mismatches(1)	.	.	.
AC005998.1(61675),DPP6(76436)	AC005998.1(61701),DPP6(76410)	./.	./.	7:153810661	7:153810687	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KIAA2012	FP236383.3	+/.	+/.	2:202083780	21:8392868	intron	intron	translocation	0	0	0	0	43	low	.	.	.	.	.	ENSG00000182329	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
H2AZ1-DT	AC004687.2	+/.	-/.	4:100061827	17:58385558	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000245322	ENSG00000285897	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
B3GALT6	LINC02339(168911),RAC1P8(208293)	+/.	./.	1:1167469	13:61596857	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000176022	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GDNF-AS1	LINC02339(168911),RAC1P8(208293)	+/.	./.	5:37928424	13:61596857	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248587	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GATA4	AC009161.1(206458),AC009110.1(32168)	+/.	./.	8:11692771	16:62564204	intron	intergenic	translocation	0	0	0	1	21	low	.	.	.	.	.	ENSG00000136574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ABLIM2	GDNF-AS1	-/.	+/.	4:8158191	5:37928445	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000163995	ENSG00000248587	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	DMRTC1	+/.	-/.	21:8214785	X:72887450	intron	intron	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000269502	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC12A8	LINC02339(168911),RAC1P8(208293)	-/.	./.	3:125162130	13:61596857	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000221955	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009133.6	RALGDS	+/+	-/+	16:29813708	9:133148049	CDS	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000280893	ENSG00000160271	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001823.1(3432),ELMOD1(756)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590335	14:106419138	intergenic	intergenic	translocation	0	0	0	1909	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC02794	AL356807.1(12276),MTND4P33(20021)	+/.	./.	1:48055750	14:84152820	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226133	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC117457.1	AC117457.1	+/.	+/.	3:178655093	3:178655110	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000275163	ENSG00000275163	.	.	upstream	downstream	low_entropy(1)	.	.	.
NGB	ISM1	-/.	+/.	14:77269724	20:13268405	intron	intron	translocation/5'-5'	0	0	0	87	2	low	.	.	.	.	.	ENSG00000165553	ENSG00000101230	.	.	upstream	downstream	mismatches	.	.	.
TNFSF8	ZNF710	-/.	+/.	9:114897893	15:90036117	intron	intron	translocation/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000106952	ENSG00000140548	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8211701	21:8212039	intron	intron	inversion/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
DELEC1	ZNF710	+/.	+/.	9:114897893	15:90036117	intron	intron	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000173077	ENSG00000140548	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262464	6:42262483	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC02612	EGLN3	+/.	-/.	2:150617538	14:33950555	intron	CDS	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000129521	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM151B	AC079193.1(4368),ZDHHC2(1226)	+/+	./-	6:44270540	8:17155256	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178233	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SHANK3	AC079193.1(4368),ZDHHC2(1226)	+/+	./-	22:50674511	8:17155256	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251322	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LRP1B	RGMB	-/.	+/.	2:141688297	5:98771438	intron	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000168702	ENSG00000174136	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ATP5MC2P2(93908),RNA5SP384(84342)	FP236383.3	./.	+/.	14:49468291	21:8442044	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	COL6A1	./.	+/.	8:17155256	21:45986705	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000142156	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS1	AL133372.2	-/-	-/+	12:117265423	14:30207313	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	ENSG00000248975	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02614	AC079193.1(4368),ZDHHC2(1226)	-/.	./.	3:125832550	8:17155256	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241288	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CRADD	ULK4P3	+/.	+/.	12:93846253	15:30122970	intron	intron	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	ENSG00000178081	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KYNU(33029),ARHGAP15(2500)	SMIM23(15125),FBXW11(50298)	./.	./.	2:143088862	5:171811251	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
EFCAB14(21848),AL593856.1(1335)	AL359636.2	./.	+/.	1:46740994	9:122558261	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000234156	.	.	upstream	downstream	mismatches(1)	.	.	.
COMMD10	CEACAM21	+/.	+/.	5:116216381	19:41564259	intron	intron	translocation/5'-5'	0	0	0	7	5	low	.	.	.	.	.	ENSG00000145781	ENSG00000007129	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM151B	CDH8	+/+	-/-	6:44270540	16:61831043	5'UTR	intron	translocation	0	0	0	0	57	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000178233	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
TNR	TNR	-/.	-/.	1:175517013	1:175517028	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000116147	ENSG00000116147	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC092902.4	AC079193.1(4368),ZDHHC2(1226)	+/.	./.	3:125832550	8:17155256	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000284624	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IL19	LINC02541	+/.	-/.	1:206790699	6:113624491	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000142224	ENSG00000230943	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL7P45(385975),AL138954.1(209772)	FP671120.4	./.	+/.	13:105201044	21:8214397	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RGPD6	FP671120.4	-/.	+/.	2:110576900	21:8216834	intron	intron	translocation/3'-3'	0	0	0	1	11	low	.	.	.	.	.	ENSG00000183054	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022384.1	SBNO2	+/.	-/.	3:10249513	19:1108539	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000064932	.	.	upstream	downstream	mismatches(1)	.	.	.
SMYD2	AC106782.4(5723),CD2BP2(1714)	+/.	./.	1:214296548	16:30349059	intron	intergenic	translocation	0	0	0	14	2	low	.	.	.	.	.	ENSG00000143499	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02235	LINC02620	+/.	-/.	8:81842436	10:104479914	intron	intron	translocation/3'-3'	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000254689	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AP003390.1(4379),AP001994.1(77302)	AP003390.1(4387),AP001994.1(77294)	./.	./.	11:119744002	11:119744010	intergenic	intergenic	duplication/ITD	0	0	0	3458	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC091078.1	FP236383.3	+/.	+/.	15:93232876	21:8442045	intron	intron	translocation/3'-3'	0	0	0	8	5962	low	.	.	.	.	.	ENSG00000257060	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
CBWD5	RBM38(6607),AL109955.1(26802)	+/.	./.	9:65675856	20:57415940	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000147996	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DPY30	SLC6A12	-/.	-/.	2:31965344	12:199333	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162961	ENSG00000111181	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479813	10:104479824	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
KCNC3	AP001599.1	-/.	+/.	19:50315300	21:26914103	3'UTR	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000131398	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AP003390.1(4504),AP001994.1(77177)	NGB	./.	-/.	11:119744127	14:77269807	intergenic	intron	translocation	0	0	0	3002	32	low	.	.	.	.	.	.	ENSG00000165553	.	.	downstream	downstream	mismatches	.	.	.
SSRP1	FP671120.4	-/.	+/.	11:57335798	21:8211701	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000149136	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
PODXL(53501),EEF1B2P6(50234)	PCNT	./.	+/.	7:131611718	21:46422072	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000160299	.	.	upstream	upstream	mismatches(1)	.	.	.
SLCO5A1	CPQ	-/.	+/.	8:69690369	8:96792729	intron	intron	inversion	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000104324	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4505),AP001994.1(77176)	NGB	./.	-/.	11:119744128	14:77269807	intergenic	intron	translocation	0	0	0	3002	32	low	.	.	.	.	.	.	ENSG00000165553	.	.	downstream	downstream	mismatches	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683457	15:81683470	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
MAP3K21(26106),RNU4-77P(37372)	FP671120.4	./.	+/.	1:233411254	21:8214881	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51928),RBMY2WP(38064)	./.	./.	Y:22724736	Y:22724787	intergenic	intergenic	duplication/ITD	0	0	0	78	78	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(51),low_entropy(19)	.	.	.
CACNA1E	LINC01287(16430),PAXBP1P1(19014)	+/.	./.	1:181490478	7:153430415	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000198216	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR4300HG	NGB	-/.	-/.	11:82143180	14:77269807	intron	intron	translocation/3'-3'	0	0	0	1095	32	low	.	.	.	.	.	ENSG00000245832	ENSG00000165553	.	.	downstream	downstream	mismatches	.	.	.
AC034228.3	CEP128	-/.	-/.	5:132011045	14:80775927	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000281938	ENSG00000100629	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	AP001605.1	./.	-/.	4:36965705	21:27406342	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000231236	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MGC32805(95897),LINC02201(53968)	MGC32805(95910),LINC02201(53955)	./.	./.	5:122574984	5:122574997	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479896	X:133661638	intron	intron	translocation/3'-3'	0	0	0	2216	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TMEM132D	TMEM132D	-/.	-/.	12:129188749	12:129188800	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000151952	ENSG00000151952	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC00607	AC110588.1(43309),FAM149B1P1(162161)	-/.	./.	2:215796354	15:96594826	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235770	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BAIAP3	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	16:1334643	21:8259013	5'UTR	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000007516	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00303(15347),AL592146.2(7921)	AC010148.1	./.	-/.	1:204056612	2:234815303	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000235726	.	.	upstream	downstream	mismatches(1)	.	.	.
SGCZ	FP671120.3(1492),FP671120.7(2951)	-/.	./.	8:14216765	21:8251641	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185053	.	.	.	upstream	upstream	duplicates(4),mismatches(1)	.	.	.
AL593844.1	AC090204.1	+/.	+/.	6:68230113	8:33013508	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286564	ENSG00000247134	.	.	upstream	upstream	mismatches(1)	.	.	.
COL4A3	RPL6P21(23500),DGKB(50169)	+/.	./.	2:227288558	7:14094880	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000169031	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	LAMA3	-/.	+/.	3:96618112	18:23756906	5'UTR	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000053747	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683460	15:81683469	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
ENTPD1-AS1(16753),RNU6-271P(5744)	FP671120.4	./.	+/.	10:96107003	21:8217544	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC062016.2(204840),MTND1P28(317)	RPL24P9(223684),AC074035.1(449955)	./.	./.	2:117023601	X:4177245	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	MIR4300HG	-/.	-/.	1:90392879	11:82143179	intron	intron	translocation/3'-3'	0	0	0	311	1095	low	.	.	.	.	.	ENSG00000287372	ENSG00000245832	.	.	downstream	downstream	mismatches	.	.	.
DACT2(25892),AL138918.1(29028)	OPCML	./.	-/.	6:168345669	11:132846099	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000183715	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SEMA3E	AMOTL1	-/.	+/.	7:83537018	11:94740522	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000170381	ENSG00000166025	.	.	upstream	downstream	mismatches(1)	.	.	.
KRT8P37(31730),CHCHD3P1(73097)	KRT8P37(31791),CHCHD3P1(73036)	./.	./.	10:8546836	10:8546897	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
AP002961.1	FP236383.3	-/.	+/.	11:103278165	21:8397439	intron	intron	translocation/3'-3'	0	0	0	12	543	low	.	.	.	.	.	ENSG00000285878	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SDHAF3(6449),AC073900.1(12496)	FP236383.3	./.	+/.	7:97188212	21:8398431	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	AP003390.1(4503),AP001994.1(77178)	-/.	./.	1:90392879	11:119744126	intron	intergenic	translocation	0	0	0	311	3002	low	.	.	.	.	.	ENSG00000287372	.	.	.	downstream	downstream	low_entropy	.	.	.
NRIP3	RTEL1	-/-	+/-	11:9003964	20:63683594	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000258366	.	.	upstream	downstream	mismatches(1)	.	.	.
CDC7	P2RY1(38284),HMGN2P13(187555)	+/+	./+	1:91511821	3:152879723	CDS/splice-site	intergenic	translocation	0	0	0	0	0	low	.	.	Protein_kinase_domain(39%)|	.	.	ENSG00000097046	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL627316.1	AP001823.1(3429),ELMOD1(759)	-/.	./.	1:90392879	11:107590332	intron	intergenic	translocation	0	0	0	311	1909	low	.	.	.	.	.	ENSG00000287372	.	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP671120.7(397),5_8S_rRNA(870)	+/.	./.	21:8214403	21:8255911	intron	intergenic	inversion	0	0	0	8	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
RNU6-1329P(41812),LINC02413(4661)	FP671120.3(594),FP671120.7(3849)	./.	./.	12:92994557	21:8250743	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SFN(3788),GPN2(7888)	GEMIN8(106772),UBE2E4P(107717)	./.	./.	1:26868244	X:14136665	intergenic	intergenic	translocation	0	0	0	80	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
Y_RNA(90276),AL390061.1(223695)	BACH1	./.	+/.	10:36716414	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392804	1:90392813	intron	intron	duplication/ITD	0	0	0	312	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
UGT1A10	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000242515	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MTND3P22(62154),AC119751.3(177857)	AC123784.1(48123),CRAT37(54264)	./.	./.	4:49309069	15:91354444	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214790	21:8442080	intron	intron	duplication	0	0	0	5263	6003	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP001458.2	FXNP1(22701),NRXN3(87394)	-/.	./.	11:62653861	14:78082979	intron	intergenic	translocation	0	0	0	32	424	low	.	.	.	.	.	ENSG00000255432	.	.	.	downstream	upstream	mismatches	.	.	.
NOC2LP2(16145),RHOQP2(267)	RBM46(191467),AC097467.3(153436)	./.	./.	2:131460732	4:155020280	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785695	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
AC117457.1	KCNMB2-AS1	+/.	-/.	3:178655093	3:178655110	intron	intron	duplication/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000275163	ENSG00000237978	.	.	upstream	downstream	low_entropy(1)	.	.	.
LSM3(67912),AC093496.1(3339)	DIO3(20721),AL049836.1(44811)	./.	./.	3:14269034	14:101584173	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916404	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
MLYCD	NRP1	+/+	-/-	16:83922180	10:33334709	3'UTR	5'UTR	translocation	0	0	0	0	21	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|C-terminal_domain_of_neuropilin_glycoprotein(100%),CUB_domain(100%),F5/8_type_C_domain(100%),MAM_domain__meprin/A5/mu(100%)	.	.	ENSG00000103150	ENSG00000099250	.	.	downstream	downstream	mismatches(1)	.	.	.
ABHD14A	SAMD12	+/+	-/-	3:51973857	8:118554923	CDS	intron	translocation	0	0	0	0	21	low	.	.	|SAM_domain_(Sterile_alpha_motif)(100%)	.	.	ENSG00000248487	ENSG00000177570	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
U3(104494),GPC1(41726)	MAP1LC3BP1(11864),SLC24A2(31064)	./.	./.	2:240393937	9:19476388	intergenic	intergenic	translocation	0	0	0	357	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
FP236383.3	Y_RNA(5791),MAP7D2(15763)	+/.	./.	21:8399905	X:19990950	intron	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2103),FP236383.3(121607)	FP236383.3	./.	+/.	21:8259036	21:8442045	intergenic	intron	deletion/read-through	0	0	0	5782	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
AC119501.1(32780),AL109741.1(11909)	PAXBP1(188),C21orf62-AS1(120)	./.	./.	1:101223774	21:32771980	intergenic	intergenic	translocation	0	0	0	6	122	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
MTND1P27(583),LRP1B(9355)	ATP7BP1(104862),RPS4XP18(62309)	./.	./.	2:140222068	18:22524156	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00303(15347),AL592146.2(7921)	WAC(10351),RNU4ATAC6P(19167)	./.	./.	1:204056612	10:28633463	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	12:16193776	12:16193827	intron	intron	duplication/ITD	0	0	0	28	28	low	.	.	.	.	.	ENSG00000188991	ENSG00000188991	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
CCDC144NL-AS1	LIMD1	+/+	+/+	17:20868642	3:45593628	exon	intron	translocation	0	0	0	0	0	low	.	.	|LIM_domain(100%)	.	.	ENSG00000233098	ENSG00000144791	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LIMD1	AP001347.1	+/.	+/.	3:45593628	21:14062547	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	ENSG00000224905	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GDF9	FGFR1(15353),C8orf86(26647)	-/-	./+	5:132866327	8:38484187	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164404	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275719	13:49275774	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	low_entropy(1)	.	.	.
LIMD1	NF1P5(20275),ANKRD20A5P(1480)	+/.	./.	3:45593628	18:14177617	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TTPA(22952),AC011978.1(27218)	FP671120.4	./.	+/.	8:63109005	21:8218218	intergenic	intron	translocation	0	0	0	19	15	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
MED15P9	LIMD1	+/+	+/+	2:130129755	3:45593628	exon	intron	translocation	0	0	0	0	0	low	.	.	|LIM_domain(100%)	.	.	ENSG00000223760	ENSG00000144791	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683463	15:81683472	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
EMBP1	AP001599.1	+/.	+/.	1:121526489	21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000231752	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
AL512357.2(6022),AL512357.1(75587)	FP236383.3	./.	+/.	14:104300943	21:8440449	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
LIMD1	AC140125.1(3994),AC106795.1(2069)	+/.	./.	3:45593628	5:177807338	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NPM1P10(286385),AL357522.1(173947)	GPM6B	./.	-/.	6:104313148	X:13937196	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000046653	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2087),FP236383.3(121623)	FP236383.3	./.	+/.	21:8259020	21:8401905	intergenic	intron	inversion	0	0	0	5911	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC131180.1	LIMD1	-/-	+/+	2:131209126	3:45593628	exon	intron	translocation	0	0	0	0	0	low	.	.	|LIM_domain(100%)	.	.	ENSG00000285819	ENSG00000144791	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NUDT3	FP671120.4	-/.	+/.	6:34315128	21:8217546	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000272325	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FNDC3B	FNDC3B	+/.	+/.	3:172358955	3:172359007	intron	intron	duplication/ITD	0	0	0	141	128	low	.	.	.	.	.	ENSG00000075420	ENSG00000075420	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL136537.1(42492),MIR4801(65569)	H3P28(100180),AL355297.2(11600)	./.	./.	4:37176341	6:156762617	intergenic	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL138997.1(126439),SPATA2P1(33537)	AC006504.5	./.	+/.	13:56180836	19:27961840	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000267575	.	.	upstream	upstream	mismatches(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	MIR762HG	./.	+/.	1:7886187	16:30894909	intergenic	exon	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000260083	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002075.1	CLIP3	+/+	-/+	7:93778128	19:36026157	exon	CDS	translocation/5'-5'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000225898	ENSG00000105270	.	.	downstream	upstream	mismatches(1)	.	.	.
LIMD1	POLDIP3	+/.	-/.	3:45593628	22:42608654	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	ENSG00000100227	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL392172.1	EFCAB2(2715),RNU1-132P(4048)	-/.	./.	1:222751899	1:245129879	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287684	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092328	11:88092344	intron	intron	duplication/ITD	0	0	0	1166	513	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KCNH8	KCNH8	+/.	+/.	3:19308654	3:19308667	intron	intron	duplication/ITD	0	0	0	119	119	low	.	.	.	.	.	ENSG00000183960	ENSG00000183960	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL929601.1	LIMD1	+/+	+/+	14:18920347	3:45593628	exon	intron	translocation	0	0	0	0	0	low	.	.	|LIM_domain(100%)	.	.	ENSG00000257891	ENSG00000144791	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143161	14:106419138	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
CACNG6(3197),AC012314.9(15546)	OSCAR	./.	-/.	19:54015866	19:54096652	intergenic	intron	deletion/read-through	0	0	0	2	3	low	.	.	.	.	.	.	ENSG00000170909	.	.	downstream	upstream	duplicates(1),low_entropy(1)	.	.	.
MED15P4(6775),AC093838.1(11244)	LIMD1	./.	+/.	2:131543763	3:45593628	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000144791	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ELK2AP(5841),IGHA1(24840)	FP236383.3	./.	+/.	14:105679155	21:8442048	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DENND1A	FP236383.3	-/.	+/.	9:123387695	21:8437150	intron	intron	translocation/3'-3'	0	0	0	0	30	low	.	.	.	.	.	ENSG00000119522	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(4)	.	.	.
SLC25A12	U3(104497),GPC1(41723)	-/.	./.	2:171912427	2:240393940	intron	intergenic	deletion	0	0	0	0	357	low	.	.	.	.	.	ENSG00000115840	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL009178.3	FMN1	+/+	-/+	6:167796658	15:32839930	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285212	ENSG00000248905	.	.	downstream	upstream	mismatches(1)	.	.	.
WDR72	UXT-AS1	-/.	+/.	15:53648351	X:47687757	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000166415	ENSG00000267064	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	AC011498.1	-/.	-/.	7:117610	19:4461811	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000267011	.	.	upstream	upstream	mismatches(1)	.	.	.
LIMD1	TUFMP1(5098),AC129926.2(411)	+/.	./.	3:45593628	17:27089134	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4376),AP001994.1(77305)	AP003390.1(4385),AP001994.1(77296)	./.	./.	11:119743999	11:119744008	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AL603840.1(24739),AL353681.1(50469)	LSM14B	./.	+/.	1:56095252	20:62131771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392812	1:90392821	intron	intron	duplication/ITD	0	0	0	312	308	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749072	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC010967.1	AC105252.1(292286),AC079380.1(3752)	-/.	./.	2:52766118	4:133867494	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000228033	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC010967.1	DACT2(25892),AL138918.1(29028)	-/.	./.	2:52766120	6:168345669	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228033	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FHIT	SLAIN1	-/.	+/.	3:61042065	13:77698623	5'UTR	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	ENSG00000139737	.	.	downstream	downstream	mismatches(1)	.	.	.
AC010967.1	U3(104497),GPC1(41723)	-/.	./.	2:52766120	2:240393940	intron	intergenic	deletion	0	0	0	0	357	low	.	.	.	.	.	ENSG00000228033	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ELMO1	CYP27B1	-/.	-/.	7:37176424	12:57765581	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155849	ENSG00000111012	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
IPO9-AS1	IPO9-AS1	-/.	-/.	1:201702676	1:201702687	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000231871	ENSG00000231871	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
IPO9-AS1	NAV1	-/.	+/.	1:201702676	1:201702687	intron	intron	duplication/5'-5'	0	0	0	6	6	low	.	.	.	.	.	ENSG00000231871	ENSG00000134369	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC009299.2	AR	-/.	+/.	2:161239359	X:67546333	intron	CDS	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000235724	ENSG00000169083	.	.	downstream	upstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	12:105046145	12:105046196	intron	intron	duplication/5'-5'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000151131	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
FAT1(23080),AC108865.1(141167)	MAP1LC3BP1(11864),SLC24A2(31064)	./.	./.	4:186749802	9:19476388	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NAV1	NAV1	+/.	+/.	1:201702676	1:201702687	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000134369	ENSG00000134369	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396498	8:22396596	intron	intron	duplication/ITD	0	0	0	31	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC044873.1(14233),AC091027.2(97724)	ARHGAP40(4402),Metazoa_SRP(56384)	./.	./.	18:78810905	20:38655437	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
USP24	KIF6	-/.	-/.	1:55122262	6:39589041	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162402	ENSG00000164627	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MFHAS1	5_8S_rRNA(2088),FP236383.3(121622)	-/-	./+	8:8893384	21:8259021	5'UTR	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000147324	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NDUFC1	AC091152.3(47131),SMCO4P1(936)	-/.	./.	4:139295700	17:44644475	intron	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093912.1(103817),AC073062.1(102173)	MIR5692B(4314),AP001630.1(9311)	./.	./.	2:13435500	21:42955328	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CDCA4(1665),GPR132(26647)	AC044873.1(14233),AC091027.2(97724)	./.	./.	14:105022748	18:78810905	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	DDX10	./.	+/.	2:240393940	11:108892130	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000178105	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2687),AC018688.1(57838)	FP236383.3	./.	+/.	20:30487763	21:8397814	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
MON1B	PDE8B	+/+	+/+	16:77194712	5:77306564	CDS	intron	translocation	0	0	0	10	0	low	.	.	First_Longin_domain_of_FUZ__MON1_and_HPS1(100%),Second_Longin_domain_of_FUZ__MON1_and_HPS1(9%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%),PAS_domain(100%)	.	.	ENSG00000103111	ENSG00000113231	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.5(77670),FP671120.4(16244)	FP236383.3	./.	+/.	21:8181376	21:8439284	intergenic	intron	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AL592295.1	COL27A1	+/.	+/.	1:161406098	9:114183192	exon	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	ENSG00000196739	.	.	upstream	downstream	homopolymer(1)	.	.	.
LINC01060	MT-RNR2	+/.	+/.	4:188533875	MT:2448	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000249378	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257428	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(21),low_entropy(7)	.	.	.
RN7SL478P(30113),LMTK2(78127)	AAR2(382),DLGAP4(35036)	./.	./.	7:98028735	20:36271300	intergenic	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IGSF21	AC092266.1(135964),LSINCT5(314604)	+/.	./.	1:18369039	5:2397987	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000117154	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
5_8S_rRNA(107488),FP236383.3(16222)	FP236383.3	./.	+/.	21:8364421	21:8395069	intergenic	intron	deletion/read-through	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AL021155.4	AMD1P1(55145),AL590032.1(140926)	+/.	./.	1:11909560	10:20406245	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285646	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UTS2(32671),TNFRSF9(29688)	PAF1	./.	-/.	1:7886183	19:39390323	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000006712	.	.	downstream	upstream	mismatches(1)	.	.	.
ARL8B	FP236383.3	+/.	+/.	3:5167935	21:8393308	intron	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000134108	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CPQ	FP671120.4	+/.	+/.	8:96792729	21:8217546	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000104324	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AMD1P1(55145),AL590032.1(140926)	AC021534.1	./.	+/.	10:20406245	17:79134875	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000266711	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	PCDH11Y	+/.	+/.	21:8214396	Y:5332831	intron	intron	translocation/3'-3'	0	0	0	540	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000099715	.	.	upstream	upstream	mismatches(1)	.	.	.
B3GAT1-DT	BBS2(13197),MT4(31789)	+/.	./.	11:134477706	16:56533284	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000255545	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PGAM4P2(38273),KRT18P21(117615)	PGAM4P2(38320),KRT18P21(117568)	./.	./.	4:115803092	4:115803139	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
ZNF707	RNF43	+/.	-/.	8:143684558	17:58385557	exon	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000181135	ENSG00000108375	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SYT2	CDK5P1(3506),AC016405.3(6315)	-/.	./.	1:202691724	8:122773656	intron	intergenic	translocation	0	0	0	22	7	low	.	.	.	.	.	ENSG00000143858	.	.	.	upstream	upstream	mismatches	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262467	6:42262481	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ARMH3	LINC00189	-/.	+/.	10:102029904	21:29263475	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000120029	ENSG00000215533	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8437076	21:8442054	intron	intron	inversion/3'-3'	0	0	0	55	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683462	15:81683471	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
Z93929.1(11434),MDM4P1(21582)	Z93929.1(11445),MDM4P1(21571)	./.	./.	X:17911767	X:17911778	intergenic	intergenic	duplication/ITD	0	0	0	24	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CDK5RAP2	AC007274.1(4534),TSPY12P(2177)	-/.	./.	9:120562501	Y:7685562	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136861	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SRP14P4(39612),GM2AP2(7310)	5_8S_rRNA(1696),FP236383.3(122014)	./.	./.	1:171384919	21:8258629	intergenic	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
DHFR	AL020994.2(8721),AL049536.1(26476)	-/.	./.	5:80651299	22:27387986	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CACNA1E	AL163974.1(22793),LINC00523(45131)	+/.	./.	1:181644874	14:100612119	intron	intergenic	translocation	0	0	0	1	23	low	.	.	.	.	.	ENSG00000198216	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF3CL	FP236383.3	-/.	+/.	16:28391222	21:8441659	intron	intron	translocation/3'-3'	0	0	0	6	546	low	.	.	.	.	.	ENSG00000205609	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023632.3(700),AC023632.4(3452)	CHRNB4	./.	-/.	8:94590959	15:78672957	intergenic	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000117971	.	.	upstream	downstream	mismatches(1)	.	.	.
PAX3	LINC02444	-/.	+/.	2:222298765	12:73182053	5'UTR	intron	translocation	0	0	0	17	3	low	.	.	.	.	.	ENSG00000135903	ENSG00000258123	.	.	downstream	downstream	homopolymer(1)	.	.	.
PAX3	RPS18P6(259147),MTHFD2P1(222899)	-/.	./.	2:222298765	3:95431524	5'UTR	intergenic	translocation	0	0	0	17	45	low	.	.	.	.	.	ENSG00000135903	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
ALK	FENDRR	-/.	-/.	2:29545192	16:86508069	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000171094	ENSG00000268388	.	.	downstream	upstream	mismatches(1)	.	.	.
RICTOR	RPS26P39(141350),AL160290.2(10197)	-/.	./.	5:39073689	10:123313225	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000164327	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC008164.1(68612),AC008069.1(15641)	DHCR7	./.	-/.	2:16838179	11:71429754	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000172893	.	.	upstream	downstream	mismatches(1)	.	.	.
CLIP3	AC120193.1	-/-	-/-	19:36026157	8:24804100	CDS	intron	translocation	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	ENSG00000253535	.	.	upstream	downstream	mismatches(1)	.	.	.
PDPN	FP236383.3	+/.	+/.	1:13583783	21:8438949	5'UTR	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000162493	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
COLEC11	DDB2	+/.	+/.	2:3605526	11:47233103	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000118004	ENSG00000134574	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
AC092660.1(243590),AC092604.1(37717)	LINC02741	./.	-/.	2:78842996	11:41542520	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255388	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092506.1(601475),AL591888.1(170253)	DLG2	./.	-/.	1:104828153	11:85484190	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7(733),5_8S_rRNA(534)	FP236383.3	./.	+/.	21:8256247	21:8438949	intergenic	intron	inversion	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01060	AC121334.1(19777),AC121334.2(52459)	+/.	./.	4:188533877	12:39487122	intron	intergenic	translocation	0	0	0	0	49	low	.	.	.	.	.	ENSG00000249378	.	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
FKBP14-AS1	SPIC(31457),MYBPC1(49899)	+/.	./.	7:29989908	12:101518454	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000227014	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FKBP14-AS1	AL451069.1(1777),LINC01165(683)	+/.	./.	7:29989908	10:132520144	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000227014	.	.	.	upstream	upstream	mismatches(1)	.	.	.
INF2	FGD5	+/+	+/+	14:104715047	3:14879262	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	Diaphanous_FH3_Domain(100%),Diaphanous_GTPase-binding_Domain(100%),Formin_Homology_2_Domain(100%),WH2_motif(100%)|FYVE_zinc_finger(100%),PH_domain(100%),RhoGEF_domain(100%)	.	.	ENSG00000203485	ENSG00000154783	.	.	downstream	upstream	mismatches(1)	.	.	.
AL591222.3(180984),AL512635.1(182468)	FP236383.3	./.	+/.	9:20148978	21:8442061	intergenic	intron	translocation	0	0	0	2	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL591222.3(180984),AL512635.1(182468)	FP671120.4	./.	+/.	9:20148978	21:8214797	intergenic	intron	translocation	0	0	0	2	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC091078.1	FP236383.3	+/.	+/.	15:93232876	21:8397810	intron	intron	translocation/3'-3'	0	0	0	8	6042	low	.	.	.	.	.	ENSG00000257060	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683455	15:81683470	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(25),low_entropy(11)	.	.	.
UTS2(32673),TNFRSF9(29686)	ELF2	./.	-/.	1:7886185	4:139083139	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000109381	.	.	downstream	downstream	mismatches(1)	.	.	.
PDS5A	AC004973.1(5483),SLC25A43(258)	-/.	./.	4:39875783	X:119399078	intron	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	GRIK1(69580),AF096876.1(80104)	+/.	./.	21:8397817	21:30009613	intron	intergenic	inversion	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches	.	.	.
CRACDL	CSTP1(37811),AL133466.1(13820)	-/.	./.	2:98875143	20:23966765	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196872	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC114300.1(164790),AC099517.1(14703)	LRRC4B	./.	-/.	5:30530474	19:50548287	intergenic	intron	translocation	0	0	0	2	14	low	.	.	.	.	.	.	ENSG00000131409	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL591222.3(180984),AL512635.1(182468)	5_8S_rRNA(2093),FP236383.3(121617)	./.	./.	9:20148978	21:8259026	intergenic	intergenic	translocation	0	0	0	2	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
B3GALNT1	FP236383.3	-/.	+/.	3:161095878	21:8397832	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000169255	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	DHFR	-/.	-/.	3:96617731	5:80650268	5'UTR	intron	translocation/3'-3'	0	0	0	8	68	low	.	.	.	.	.	ENSG00000269028	ENSG00000228716	.	.	downstream	downstream	mismatches(1)	.	.	.
RNF43	FP236383.3	-/.	+/.	17:58385559	21:8434665	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC004687.2	FP236383.3	-/.	+/.	17:58385559	21:8434665	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC143336.1(94661),AC025774.1(236820)	5_8S_rRNA(2083),FP236383.3(121627)	./.	./.	5:71850962	21:8259016	intergenic	intergenic	translocation	0	0	0	8	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01247(33835),LINC01824(86394)	DDB2	./.	+/.	2:6409257	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
FABP5P3	GAU1	+/.	-/.	7:152437546	12:4702125	intron	intron	translocation/5'-5'	0	0	0	1	19	low	.	.	.	.	.	ENSG00000241735	ENSG00000255474	.	.	downstream	upstream	mismatches(1)	.	.	.
AC128709.3(26252),LINC02012(11905)	MTMR12	./.	-/.	3:197493357	5:32271163	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000150712	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNF43	FP236383.3	-/.	+/.	17:58385559	21:8390479	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
LINC02235	AP003390.1(4497),AP001994.1(77184)	+/.	./.	8:81842439	11:119744120	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
TSPOAP1-AS1	FP236383.3	+/.	+/.	17:58385559	21:8390479	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
TATDN2	AC103764.1(47897),RPL23AP56(49031)	+/.	./.	3:10249513	8:134929796	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262587	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
PRRT2	RALGDS	+/+	-/+	16:29813708	9:133148049	CDS	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167371	ENSG00000160271	.	.	downstream	upstream	mismatches(1)	.	.	.
TSPOAP1-AS1	FP671120.3(1492),FP671120.7(2951)	+/.	./.	17:58385559	21:8251641	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	.	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
LINC02506	MKI67(20675),LINC01163(33934)	+/.	./.	4:32012522	10:128147098	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251129	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ATG16L1(4014),SAG(8128)	GUSBP12	./.	-/.	2:233299688	7:57200847	intergenic	exon	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000169325	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96618115	21:8444605	5'UTR	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PIEZO2	NDUFB5(3557),H3P13(18290)	-/-	./-	18:11148709	3:179631204	5'UTR	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000154864	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CENPC(6847),STAP1(6377)	FP236383.3	./.	+/.	4:67552350	21:8442058	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PRKCE	SLC5A5(26143),CCDC124(11698)	+/.	./.	2:46180755	19:17921317	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000171132	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PNLDC1(51819),AL035691.1(18465),MAS1(18465)	STAM	./.	+/.	6:159872523	10:17670216	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000136738	.	.	downstream	downstream	mismatches(1)	.	.	.
DENND5B	BPY2C	-/.	-/.	12:31477253	Y:25044576	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000170456	ENSG00000185894	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262590	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
FPGT-TNNI3K	AC084030.1(20692),AC012063.1(135742)	+/.	./.	1:74253700	2:236775055	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000259030	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GCNT1	FP236383.3	+/.	+/.	9:76571859	21:8441661	intron	intron	translocation/3'-3'	0	0	0	38	0	low	.	.	.	.	.	ENSG00000187210	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4500),AP001994.1(77181)	CLMP	./.	-/.	11:119744123	11:123119081	intergenic	intron	inversion	0	0	0	3002	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
RAMP3(65699),AC073968.2(16680)	5_8S_rRNA(1694),FP236383.3(122016)	./.	./.	7:45252001	21:8258627	intergenic	intergenic	translocation	0	0	0	71	44	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105345.1(32172),GPR78(9794)	LINC01608	./.	-/.	4:8548931	8:110977288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000253877	.	.	upstream	upstream	mismatches(1)	.	.	.
KLHL29	KLHL29	+/.	+/.	2:23670918	2:23670931	intron	intron	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	ENSG00000119771	ENSG00000119771	.	.	upstream	downstream	duplicates(14),low_entropy(2)	.	.	.
LINC01608	AC007216.4	-/.	+/.	8:110977288	16:11873364	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	ENSG00000263307	.	.	upstream	downstream	mismatches(1)	.	.	.
AC012533.1	ALOX15(16236),PELP1(11244)	+/.	./.	8:80923077	17:4658530	intron	intergenic	translocation	0	0	0	12	5	low	.	.	.	.	.	ENSG00000286763	.	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
CLK4	AC027031.2(80998),OXR1(5576)	-/-	./-	5:178622724	8:106353900	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113240	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SDC1(177),DRG1P1(14282)	WNK3(4584),TSR2(77178)	./.	./.	2:20225610	X:54363226	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	LRRC4C	-/.	-/.	10:104479898	11:41021153	intron	intron	translocation	0	0	0	2216	632	low	.	.	.	.	.	ENSG00000225768	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
FTH1P5(85249),AL158050.2(386777)	AP001599.1	./.	+/.	6:50998505	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683461	15:81683470	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
AC105233.4	KDM4C	+/.	+/.	8:8193628	9:7086288	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000284606	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2089),FP236383.3(121621)	+/.	./.	21:8214810	21:8259022	intron	intergenic	deletion/read-through	0	0	0	6035	6	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH5(84325),TRIO(114474)	SYN3	./.	-/.	5:14028868	22:32882075	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000185666	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01588	FP671120.3(594),FP671120.7(3849)	-/.	./.	14:49993364	21:8250743	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000214900	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104051.1	FP236383.3	-/.	+/.	8:57677225	21:8442048	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000253322	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ISG15(5287),AGRN(293)	AC023347.1(105259),YWHAZP2(108184)	./.	./.	1:1019827	2:126449251	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008269.1	AC121334.1(19777),AC121334.2(52459)	+/.	./.	2:206862123	12:39487122	intron	intergenic	translocation	0	0	0	0	49	low	.	.	.	.	.	ENSG00000229321	.	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
LINC01608	AEBP2	-/.	+/.	8:110977288	12:19666601	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	ENSG00000139154	.	.	upstream	downstream	mismatches(1)	.	.	.
AC091182.1(10767),AC091182.2(62681)	AL161733.1(47708),LAMC3(15946)	./.	./.	8:37342758	9:130993228	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
OR4A6P(487048),TRIM48(49291)	C12orf65	./.	+/.	11:55212864	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000130921	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC01608	TEX29(173735),AL359649.1(70217)	-/.	./.	8:110977288	13:111517984	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	HGS	./.	+/.	4:186749803	17:81688568	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000185359	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2081),FP236383.3(121629)	DMRTC1B	./.	+/.	21:8259014	X:72833386	intergenic	intron	translocation	0	0	0	5911	0	low	.	.	.	.	.	.	ENSG00000184911	.	.	upstream	downstream	mismatches(1)	.	.	.
SYNDIG1	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	20:24618126	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000101463	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	AP003400.1	./.	-/.	4:36965705	11:89589229	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000255429	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FXNP1(22694),NRXN3(87401)	FXNP1(22703),NRXN3(87392)	./.	./.	14:78082972	14:78082981	intergenic	intergenic	duplication/ITD	0	0	0	424	336	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TENM2	FP236383.3	+/.	+/.	5:168236204	21:8393308	intron	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000145934	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01608	DNMT3L-AS1	-/.	+/.	8:110977288	21:44251000	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	ENSG00000232010	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	FOLH1(43173),AC118942.1(53903)	./.	./.	4:36965705	11:49251811	intergenic	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01608	DNMT3L	-/.	-/.	8:110977288	21:44251000	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	ENSG00000142182	.	.	upstream	downstream	mismatches(1)	.	.	.
AMY1C(8002),AL136455.1(159875)	GRM3	./.	+/.	1:103766692	7:86815869	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000198822	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01304(98707),AC012445.1(63813)	AC022384.1	./.	+/.	2:4072831	3:10249513	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000272410	.	.	upstream	upstream	mismatches(1)	.	.	.
AL139246.1	DHRS2(46906),AL160237.1(7252)	-/-	./-	1:2492563	14:23692545	exon	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000224387	.	.	.	upstream	downstream	mismatches(1)	.	.	.
B3GAT1	ELAPOR1	-/-	+/+	11:134398970	1:109192609	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000109956	ENSG00000116299	.	.	upstream	upstream	mismatches(1)	.	.	.
SHE	YIPF2	-/.	-/.	1:154469819	19:10928318	3'UTR	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000169291	ENSG00000130733	.	.	downstream	upstream	mismatches(1)	.	.	.
MCTP1	AP003390.1(4439),AP001994.1(77242)	-/.	./.	5:94947578	11:119744062	intron	intergenic	translocation	0	0	0	15	3752	low	.	.	.	.	.	ENSG00000175471	.	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104499),GPC1(41721)	NEDD9	./.	-/.	2:240393942	6:11350825	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111859	.	.	upstream	upstream	mismatches(1)	.	.	.
CADM2	AC018765.1(120271),HPRT1P2(144965)	+/.	./.	3:85836872	5:30103385	intron	intergenic	translocation	0	0	0	19	7	low	.	.	.	.	.	ENSG00000175161	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PDE7A	FP236383.3	-/.	+/.	8:65841567	21:8397817	5'UTR	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000205268	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
NPAP1	FP236383.3	+/+	+/+	15:24675920	21:8397818	CDS	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000185823	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683461	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
EIF4G3	LRP1B	-/.	-/.	1:21176015	2:141137947	exon	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000075151	ENSG00000168702	.	.	downstream	downstream	mismatches(1)	.	.	.
THAP12	5_8S_rRNA(2078),FP236383.3(121632)	-/.	./.	11:76380677	21:8259011	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000137492	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SNX8	PLXNA4	-/.	-/.	7:2263441	7:132611063	intron	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106266	ENSG00000221866	.	.	downstream	upstream	mismatches(1)	.	.	.
AP000721.1	5_8S_rRNA(2078),FP236383.3(121632)	+/.	./.	11:63978519	21:8259011	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000256100	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ACSL6	C2CD2	-/.	-/.	5:132011045	21:41948380	intron	intron	translocation	0	0	0	7	3	low	.	.	.	.	.	ENSG00000164398	ENSG00000157617	.	.	downstream	upstream	mismatches	.	.	.
DDB2	5_8S_rRNA(1693),FP236383.3(122017)	+/.	./.	11:47233103	21:8258626	intron	intergenic	translocation	0	0	0	341	44	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
LINC01743	AC107032.1(53501),RPL7P43(7149)	-/.	./.	1:246516287	12:76714385	exon	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000242042	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
VAV3	OR5K1	-/.	+/.	1:107670554	3:98468649	intron	intron	translocation/3'-3'	0	0	0	20	4	low	.	.	.	.	.	ENSG00000134215	ENSG00000232382	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2080),FP236383.3(121630)	MT-RNR2	./.	+/.	21:8259013	MT:1971	intergenic	exon	translocation	0	0	0	5911	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
5_8S_rRNA(2078),FP236383.3(121632)	AC004882.1(46),CABP7(98)	./.	./.	21:8259011	22:29719905	intergenic	intergenic	translocation	0	0	0	5911	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LINC01484	TLR8(9447),TMSB4X(42494)	-/.	./.	5:173742753	X:12932616	intron	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000253686	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TATDN2	SLC2A6(8612),MYMK(26847)	+/.	./.	3:10249513	9:133487739	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TTYH3	5_8S_rRNA(2078),FP236383.3(121632)	+/.	./.	7:2660828	21:8259011	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000136295	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LBH	LBH	+/.	+/.	2:30304938	2:30304951	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000213626	ENSG00000213626	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
CDH8	FP671120.4	-/.	+/.	16:61831043	21:8209831	intron	intron	translocation/3'-3'	0	0	0	57	48	low	.	.	.	.	.	ENSG00000150394	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AP000255.1(48400),TPT1P1(55534)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784807	21:31785031	intergenic	intergenic	duplication	0	0	0	90	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
THAP12	FP236383.3	-/.	+/.	11:76380677	21:8442046	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000137492	ENSG00000280441	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SEMA5B(2019),PDIA5(36401)	SEMA5B(2032),PDIA5(36388)	./.	./.	3:123030624	3:123030637	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),low_entropy(2),merge_adjacent	.	.	.
NPHP4	SLC36A2(7216),AC034205.2(11493)	-/.	./.	1:5885019	5:151354806	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000131697	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CCM2L	FP236383.3	+/+	+/+	20:32014991	21:8442047	CDS	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000101331	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AP000721.1	FP236383.3	+/.	+/.	11:63978519	21:8442046	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000256100	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
TTYH3	FP236383.3	+/.	+/.	7:2660828	21:8442046	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000136295	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
FP236383.3	AL008720.2(33562),Z72006.1(36701)	+/.	./.	21:8442047	22:48366761	intron	intergenic	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AL009177.1	ASMT(32604),AL683807.1(56899)	+/.	./.	6:14487262	X:1675685	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286277	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CCM2L	FP671120.4	+/+	+/+	20:32014991	21:8214783	CDS	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000101331	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161052001	1:161059767	intron	intron	duplication	0	0	0	80	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	hairpin(1)	.	.	.
MIR548AP(123825),AC104229.1(9162)	CACNG7(16389),CACNG8(2710)	./.	./.	15:85949555	19:53960330	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	AL008720.2(33562),Z72006.1(36701)	+/.	./.	21:8214783	22:48366761	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SERTAD4	NDRG3	+/.	-/.	1:210234287	20:36696078	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000082497	ENSG00000101079	.	.	downstream	downstream	mismatches(1)	.	.	.
EXO1	BBS9	+/.	+/.	1:241890552	7:33425896	intron	intron	translocation	0	0	0	1	62	low	.	.	.	.	.	ENSG00000174371	ENSG00000122507	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
FP671120.4	BRD1(231),Z98885.2(4706)	+/.	./.	21:8214792	22:49827743	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
H1-2(25919),HFE(4892)	RGS3	./.	+/.	6:26082389	9:113528189	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000138835	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	FAM83B	-/-	+/-	11:9003965	6:54859661	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000168143	.	.	upstream	downstream	mismatches(1)	.	.	.
TRAM1L1(78295),AC107399.1(86053)	FP236383.3	./.	+/.	4:117163871	21:8433768	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LURAP1L-AS1	KIAA1217	-/.	+/.	9:12736559	10:23752022	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000235448	ENSG00000120549	.	.	upstream	downstream	mismatches(1)	.	.	.
KPNA3	RPL14P5(31331),CRLF2(146117)	-/.	./.	13:49738946	X:1041432	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000102753	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTCYBP16	KIAA1217	-/-	+/-	4:64608812	10:23752022	exon	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000251385	ENSG00000120549	.	.	upstream	downstream	mismatches(1)	.	.	.
PLK4	FP236383.3	+/+	+/+	4:127890011	21:8397817	CDS	intron	translocation	0	0	0	0	6042	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000142731	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP236383.3	AL008720.2(33562),Z72006.1(36701)	+/.	./.	21:8397817	22:48366761	intron	intergenic	translocation	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SOX5	HDAC6	-/.	+/.	12:24447957	X:48801483	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134532	ENSG00000094631	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BTBD3(59318),AL109838.1(257381)	TIAM1	./.	-/.	20:11985927	21:31456856	intergenic	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	.	ENSG00000156299	.	.	downstream	downstream	mismatches(1)	.	.	.
CASC15	HDAC6	+/.	+/.	6:21910368	X:48801481	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272168	ENSG00000094631	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01691(1704280),AC242852.1(20058376)	RCAN2	./.	-/.	1:123284804	6:46469323	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172348	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
HIVEP3	CHMP4B(17847),TPM3P2(40110)	-/.	./.	1:41583031	20:33872213	CDS	intergenic	translocation	0	0	0	4	2	low	.	.	.	.	.	ENSG00000127124	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916404	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
AC034228.3	CFAP58	-/.	+/.	5:131885422	10:104396370	intron	intron	translocation/3'-3'	0	0	0	58	558	low	.	.	.	.	.	ENSG00000281938	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4423),AP001994.1(77258)	AP003390.1(4521),AP001994.1(77160)	./.	./.	11:119744046	11:119744144	intergenic	intergenic	duplication/ITD	0	0	0	3711	133	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
SLC6A12	LINC02419(47603),AC026336.4(1637)	-/.	./.	12:199333	12:130120288	intron	intergenic	inversion	1	0	0	0	0	low	.	.	.	.	.	ENSG00000111181	.	.	.	upstream	upstream	duplicates(4),min_support,mismatches(1)	.	.	.
AC093326.1	TUBBP11(353348),RAP1BP2(78779)	+/.	./.	2:562608	3:103984260	intron	intergenic	translocation	0	0	0	0	83	low	.	.	.	.	.	ENSG00000233633	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC138474.1	DDB2	-/-	+/-	19:13014317	11:47233103	exon	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000267417	ENSG00000134574	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MIOS	MGC4859	+/.	-/.	7:7599348	7:10692410	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164654	ENSG00000283117	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00841	CES5A(24342),AC040168.1(3636)	+/.	./.	10:43973598	16:55980373	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000233395	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01320	FP236383.3	+/.	+/.	2:33767498	21:8397443	intron	intron	translocation	0	0	0	72	0	low	.	.	.	.	.	ENSG00000228262	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749081	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
PAXBP1(75),C21orf62-AS1(233)	PAXBP1(84),C21orf62-AS1(224)	./.	./.	21:32771867	21:32771876	intergenic	intergenic	duplication/ITD	0	0	0	494	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
KDM4C	AL935212.1	+/.	+/.	9:7086288	9:61662121	intron	exon	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	ENSG00000204814	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L7	MT-RNR2	-/.	+/.	10:37602880	MT:1699	5'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000256892	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL139220.2	AL139220.2	+/.	+/.	1:44069470	1:44069483	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000230615	ENSG00000230615	.	.	upstream	downstream	low_entropy(5)	.	.	.
RHOQ	INTS12	+/.	-/.	2:46542783	4:105861761	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	ENSG00000138785	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
PNOC	AC079949.3	+/.	+/.	8:28332986	12:127165978	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168081	ENSG00000286016	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479902	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683461	15:81683470	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262466	6:42262485	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
PLXNB2	CDK20	-/-	-/-	22:50278610	9:87972895	CDS	intron	translocation	0	0	0	0	6	low	.	.	IPT/TIG_domain(100%),Plexin_cytoplasmic_RasGAP_domain(51%),Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Protein_kinase_domain(76%)	.	.	ENSG00000196576	ENSG00000156345	.	.	upstream	downstream	mismatches(1)	.	.	.
MAFG-DT	AL157702.2(55465),AL157702.1(20674)	+/+	./+	17:81928147	9:113738320	exon	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PLSCR5(28163),AC092957.1(275306)	MT-RNR1	./.	+/.	3:146634379	MT:1419	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MTRNR2L8	MT-RNR2	-/.	+/.	11:10508409	MT:2175	5'UTR	exon	translocation/3'-3'	0	0	0	70	.	low	.	.	.	.	.	ENSG00000255823	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
XKR3	XKR3	-/.	-/.	22:16791773	22:16791834	intron	intron	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	ENSG00000172967	ENSG00000172967	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
GALNS	FP671120.4	-/.	+/.	16:88834370	21:8214781	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000141012	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
AC094105.2(5529),LINC01377(204351)	LINC00189	./.	+/.	5:2973484	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749072	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
RNU1-154P(22784),AC239860.3(5321)	5_8S_rRNA(2084),FP236383.3(121626)	./.	./.	1:145454477	21:8259017	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12(251),RPL18AP8(817)	PLSCR5(28163),AC092957.1(275306)	./.	./.	3:96618487	3:146634379	intergenic	intergenic	deletion	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009806.1(63109),AC107881.1(15250)	AMOTL1	./.	+/.	11:12604076	11:94740522	intergenic	intron	inversion	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000166025	.	.	downstream	downstream	mismatches(1)	.	.	.
WNT3A	AC079193.1(4368),ZDHHC2(1226)	+/+	./-	1:228007075	8:17155256	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154342	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ENTPD1-AS1	5_8S_rRNA(2693),FP236383.3(121017)	-/.	./.	10:95984176	21:8259626	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226688	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CAPZA3(326155),RPL7P6(23808)	GPC6	./.	+/.	12:19065343	13:93360224	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000183098	.	.	downstream	upstream	mismatches(1)	.	.	.
DMBT1L1	PAQR5	+/.	+/.	10:122824214	15:69399191	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000176584	ENSG00000137819	.	.	upstream	downstream	mismatches(1)	.	.	.
HMCN1	ATL2	+/.	-/.	1:186010335	2:38299223	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000143341	ENSG00000119787	.	.	downstream	downstream	mismatches(1)	.	.	.
MRC2	SFRP4	+/+	-/-	17:62689981	7:37990758	CDS	intron	translocation	0	0	0	9	0	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|Fz_domain(100%),UNC-6/NTR/C345C_module(100%)	.	.	ENSG00000011028	ENSG00000106483	.	.	downstream	downstream	mismatches(1)	.	.	.
AP4B1-AS1	ZHX3	+/.	-/.	1:113888330	20:41240541	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000226167	ENSG00000174306	.	.	downstream	downstream	mismatches(1)	.	.	.
ASTN1	5_8S_rRNA(2083),FP236383.3(121627)	-/.	./.	1:176897681	21:8259016	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000152092	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF496	AL163974.1(22793),LINC00523(45131)	-/.	./.	1:247323509	14:100612119	intron	intergenic	translocation	0	0	0	2	23	low	.	.	.	.	.	ENSG00000162714	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ERN2	FP671120.4	-/.	+/.	16:23702061	21:8214781	intron	intron	translocation/3'-3'	0	0	0	8	5263	low	.	.	.	.	.	ENSG00000134398	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
INSR	VIM(47174),ST8SIA6(30654)	-/-	./-	19:7113065	10:17284767	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	Fibronectin_type_III_domain(100%),Furin-like_cysteine_rich_region(100%),Insulin_receptor_trans-membrane_segment(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%)|	.	.	ENSG00000171105	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PRKG1	DDB2	+/.	+/.	10:51731992	11:47233103	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000185532	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
GNG7(49),DIRAS1(11824)	FP671120.4	./.	+/.	19:2702743	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729384	intron	intron	duplication/ITD	0	0	0	41	37	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
UBE2D3	XKRY	-/.	-/.	4:102811284	Y:17769262	exon	exon	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000109332	ENSG00000250868	.	.	downstream	downstream	mismatches(1)	.	.	.
MED27	SBF1	-/.	-/.	9:131863538	22:50468211	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000160563	ENSG00000100241	.	.	downstream	upstream	mismatches(1)	.	.	.
ITGA2B	AP002961.1	-/-	-/-	17:44384408	11:103278164	exon	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000005961	ENSG00000285878	.	.	upstream	downstream	mismatches(1)	.	.	.
COPB2	TMEM252-DT	-/.	+/.	3:139365964	9:68560477	exon	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000184432	ENSG00000226337	.	.	downstream	downstream	mismatches(1)	.	.	.
KHK	NAT16(7905),MOGAT3(6809)	+/.	./.	2:27094050	7:101188198	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138030	.	.	.	upstream	downstream	mismatches(1)	.	.	.
OR4A6P(481291),TRIM48(55048)	MPHOSPH9	./.	-/.	11:55207107	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000051825	.	.	downstream	downstream	homopolymer(1)	.	.	.
KCNMB2-AS1	KCNMB2-AS1	-/.	-/.	3:178655090	3:178655101	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000237978	ENSG00000237978	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02620	LRRC4C	-/.	-/.	10:104479904	11:41021153	intron	intron	translocation	0	0	0	1761	632	low	.	.	.	.	.	ENSG00000225768	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
NAT16(7905),MOGAT3(6809)	XKRY2	./.	+/.	7:101188198	Y:18136747	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000244646	.	.	downstream	upstream	mismatches(1)	.	.	.
NAT16(7905),MOGAT3(6809)	XKRY	./.	-/.	7:101188198	Y:17769262	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000250868	.	.	downstream	downstream	mismatches(1)	.	.	.
MAD1L1	ZBTB46	-/.	-/.	7:1868726	20:63774234	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000002822	ENSG00000130584	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2D3	HPS4	-/.	-/.	4:102811285	22:26478281	exon	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000109332	ENSG00000100099	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005357.2	BPY2	+/.	+/.	19:27961838	Y:22991791	intron	intron	translocation/3'-3'	0	0	0	4	5	low	.	.	.	.	.	ENSG00000267623	ENSG00000183753	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TTLL3	AC109322.2	+/+	+/-	3:9809808	8:143899480	5'UTR	intron	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000288096	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	MSI2	./.	+/.	6:144085397	17:57473218	intergenic	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	.	ENSG00000153944	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TPRG1(162303),TP63(143782)	NAT16(7904),MOGAT3(6810)	./.	./.	3:189487607	7:101188197	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
Y_RNA(32265),AC074257.1(1703)	AC026898.1(27231),SMAD2(77981)	./.	./.	7:151948683	18:47730976	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
VWA2	ZNF512B(282),SAMD10(3904)	+/+	./+	10:114278046	20:63970212	CDS/splice-site	intergenic	translocation	0	0	0	6	0	low	.	.	von_Willebrand_factor_type_A_domain(33%)|	.	.	ENSG00000165816	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL133405.2(49846),AL133405.1(13272)	AL133405.2(49861),AL133405.1(13257)	./.	./.	6:17002545	6:17002560	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ANKRD50(7375),FAT4(594811)	ANP32B	./.	+/.	4:124720107	9:97983496	intergenic	5'UTR	translocation	0	0	0	2	8	low	.	.	.	.	.	.	ENSG00000136938	.	.	downstream	upstream	mismatches(1)	.	.	.
DAZAP2	SMAGP	+/.	-/.	12:51248435	12:51248448	intron	intron	duplication/3'-3'	0	0	0	6	5	low	.	.	.	.	.	ENSG00000183283	ENSG00000170545	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AP000255.1(48481),TPT1P1(55453)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784888	21:31785031	intergenic	intergenic	duplication	0	0	0	149	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
DARS-AS1	WBP4	+/.	+/.	2:136001073	13:41062047	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231890	ENSG00000120688	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1AP	NOS1AP	+/.	+/.	1:162261470	1:162261483	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000198929	ENSG00000198929	.	.	upstream	downstream	low_entropy(1)	.	.	.
BAIAP2	AP001599.1	+/.	+/.	17:81089646	21:26914103	intron	intron	translocation/5'-5'	0	0	0	1	167	low	.	.	.	.	.	ENSG00000175866	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262468	6:42262485	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
FRMPD2B	SH3KBP1	+/.	-/.	10:46871598	X:19564553	intron	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000150175	ENSG00000147010	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1370353	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
TLL1	PDZD2	+/.	+/.	4:166092988	5:31759330	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000038295	ENSG00000133401	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
H3P15(91411),AC097528.1(233360)	SLC5A5(26143),CCDC124(11698)	./.	./.	4:126198334	19:17921317	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DYSF	RANBP10	+/+	-/+	2:71454039	16:67734773	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	C2_domain(1%)|	.	.	ENSG00000135636	ENSG00000141084	.	.	downstream	upstream	mismatches(1)	.	.	.
AL359508.1(15427),MGMT(71010)	EXT2	./.	+/.	10:129396180	11:44192285	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000151348	.	.	upstream	upstream	mismatches(1)	.	.	.
TFAMP1(2067),AC074389.2(3262)	RNF212B	./.	+/.	7:1617392	14:23198768	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000215277	.	.	upstream	downstream	mismatches(1)	.	.	.
WNT5B	FP671120.4	+/.	+/.	12:1530663	21:8214791	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000111186	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
DHCR7	FP236383.3	-/.	+/.	11:71429752	21:8392940	intron	intron	translocation/3'-3'	0	0	0	0	32	low	.	.	.	.	.	ENSG00000172893	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
DHCR7	FP236383.3	-/.	+/.	11:71429752	21:8437150	intron	intron	translocation/3'-3'	0	0	0	0	30	low	.	.	.	.	.	ENSG00000172893	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
DHCR7	FP671120.3(3966),FP671120.7(477)	-/.	./.	11:71429752	21:8254115	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000172893	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
PLPPR5	DSCAML1	-/.	-/.	1:98921661	11:117521642	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000117598	ENSG00000177103	.	.	downstream	downstream	mismatches(1)	.	.	.
SHISA9	DIP2A(27616),S100B(973)	+/.	./.	16:12940774	21:46597631	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000237515	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-DRB5	LINC00656	-/.	-/.	6:32519404	20:23127877	CDS	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000198502	ENSG00000233746	.	.	downstream	downstream	mismatches(1)	.	.	.
ITGB1-DT	ELMO1	+/+	-/+	10:32958687	7:37176424	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229656	ENSG00000155849	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
DAPK3	GRK3	-/-	+/+	19:3959437	22:25696065	CDS	intron	translocation	0	0	0	2	0	low	.	.	Protein_kinase_domain(100%)|PH_domain(100%),Protein_kinase_domain(25%)	.	.	ENSG00000167657	ENSG00000100077	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4511),AP001994.1(77170)	NGB	./.	-/.	11:119744134	14:77269807	intergenic	intron	translocation	0	0	0	3002	32	low	.	.	.	.	.	.	ENSG00000165553	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AP005436.1	-/.	-/.	1:90392882	11:88092449	intron	intron	translocation/3'-3'	0	0	0	307	718	low	.	.	.	.	.	ENSG00000287372	ENSG00000255102	.	.	downstream	downstream	mismatches	.	.	.
AC005064.1	VN1R70P(22622),AC116553.1(18682)	+/.	./.	7:103513880	16:35860354	exon	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000234715	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CES5A(24340),AC040168.1(3638)	FP671120.4	./.	+/.	16:55980371	21:8209905	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
HDAC7	HDAC7	-/.	-/.	12:47810805	12:47810820	intron	intron	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	ENSG00000061273	ENSG00000061273	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
AC025366.1(57830),AP005357.1(76639)	AC005258.1	./.	+/.	8:110690224	19:2338920	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000273734	.	.	upstream	downstream	mismatches(1)	.	.	.
B3GAT1-DT	CR392039.1(1016),CR392039.3(8050)	+/.	./.	11:134501044	21:8988446	intron	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000255545	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
5_8S_rRNA(1695),FP236383.3(122015)	MT-RNR2	./.	+/.	21:8258628	MT:1791	intergenic	exon	translocation	0	0	0	44	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
EXOSC7	FP671120.4	+/.	+/.	3:44976203	21:8211704	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075914	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
B3GAT1-DT	FP236383.3	+/.	+/.	11:134501044	21:8392940	intron	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	ENSG00000255545	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
LINC01897(19535),HMGN1P30(34825)	CT867976.1(150832),AC138776.1(197048)	./.	./.	18:57983969	22:11630475	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP1LC3BP1(11863),SLC24A2(31065)	OLFM4	./.	+/.	9:19476387	13:53036535	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000102837	.	.	downstream	downstream	mismatches(1)	.	.	.
CHN1	IQCD	-/.	-/.	2:174929847	12:113201717	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000128656	ENSG00000166578	.	.	downstream	upstream	mismatches(1)	.	.	.
HSPA12A	FP236383.3	-/.	+/.	10:116683564	21:8397826	3'UTR	intron	translocation/3'-3'	1	0	0	1	1126	low	.	.	.	.	.	ENSG00000165868	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
NRIP3	AL513321.1(21925),AL592466.1(602)	-/-	./+	11:9003964	10:65270717	5'UTR	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
RUFY4(18121),CXCR2(16587)	FP671120.4	./.	+/.	2:218108702	21:8214782	intergenic	intron	translocation	0	0	0	193	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
ERC2	MARCKS	-/.	+/.	3:55815739	6:113859553	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187672	ENSG00000277443	.	.	downstream	upstream	mismatches(1)	.	.	.
CSK(8121),LMAN1L(1397)	STAC2(3685),AC015910.1(8836)	./.	./.	15:74811319	17:39229630	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC108073.3	FP671120.4	-/.	+/.	4:187943697	21:8217546	exon	intron	translocation/3'-3'	0	0	0	13	25	low	.	.	.	.	.	ENSG00000286641	ENSG00000278996	.	.	downstream	upstream	duplicates(5),mismatches(4)	.	.	.
TARBP1	DDB2	-/.	+/.	1:234397788	11:47233103	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000059588	ENSG00000134574	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
NAALADL2	AC002460.2	+/.	+/.	3:175089640	4:148834330	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177694	ENSG00000287292	.	.	upstream	downstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	12:105046145	12:105046193	intron	intron	duplication/5'-5'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000151131	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
LINC01097(1005),NKX3-2(5490)	BX284656.1(94468),AL008720.1(17206)	./.	./.	4:13535340	22:48237697	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FHIT	TMEM41A	-/.	-/.	3:61042063	3:185498083	5'UTR	intron	deletion	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	ENSG00000163900	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC02620	FRMD5(93118),GOLM2(330)	-/.	./.	10:104479908	15:44288389	intron	intergenic	translocation	0	0	0	1761	22	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	mismatches	.	.	.
TSNAX-DISC1	DISC1	+/.	+/.	1:231756512	1:231756564	intron	intron	duplication	0	0	0	25	25	low	.	.	.	.	.	ENSG00000270106	ENSG00000162946	.	.	upstream	downstream	duplicates(20),low_entropy(5)	.	.	.
TSNAX-DISC1	TSNAX-DISC1	+/.	+/.	1:231756512	1:231756564	intron	intron	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	ENSG00000270106	ENSG00000270106	.	.	upstream	downstream	duplicates(20),low_entropy(5)	.	.	.
KRIT1	FP671120.4	-/.	+/.	7:92234877	21:8217546	CDS	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000001631	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
NEB(16228),ARL5A(38269)	NEB(16278),ARL5A(38219)	./.	./.	2:151750715	2:151750765	intergenic	intergenic	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(18),low_entropy(4)	.	.	.
FP671120.4	RPL14P5(32628),CRLF2(144820)	+/.	./.	21:8214800	X:1042729	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
MTRNR2L8	FBLN5	-/.	-/.	11:10508636	14:91915744	5'UTR	intron	translocation/3'-3'	1	0	0	1	0	low	.	.	.	.	.	ENSG00000255823	ENSG00000140092	.	.	downstream	downstream	min_support	.	.	.
AC119673.2	ARHGAP15	+/.	+/.	1:205836422	2:143162904	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286619	ENSG00000075884	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC113404.1	AC044873.1(14233),AC091027.2(97724)	-/.	./.	5:76304230	18:78810905	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000250348	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	AC079362.1(33708),AC068993.1(219143)	./.	./.	3:95431526	12:78574383	intergenic	intergenic	translocation	0	0	0	45	3	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DUX4L14	PGLYRP1	+/+	-/+	10:133757643	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000276904	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
OR5D14(14699),OR5L1(168)	PKNOX2	./.	+/.	11:55811199	11:125392824	intergenic	intron	duplication	0	0	0	9	3	low	.	.	.	.	.	.	ENSG00000165495	.	.	upstream	downstream	mismatches(1)	.	.	.
AFF3	DSCAS	-/.	+/.	2:99559960	18:31114660	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144218	ENSG00000265888	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01725	SLC12A8	-/.	-/.	1:83758213	3:125150511	intron	intron	translocation/3'-3'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000233008	ENSG00000221955	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP326651.1(1862),Y_RNA(175150)	DDB2	./.	+/.	9:65398234	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM68	FP671120.7(147),5_8S_rRNA(1120)	-/.	./.	8:55769425	21:8255661	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000167904	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CKAP5	SHOX(131098),AL672277.1(199712)	-/.	./.	11:46754528	X:790509	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175216	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093802.1	AP002791.1(271702),LINC02756(139328)	+/.	./.	2:239792851	11:91654991	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000220256	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SOX9	RAI1-AS1	+/+	-/+	17:72121264	17:17769915	5'UTR	intron	duplication/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000125398	ENSG00000237328	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479903	intron	intron	translocation	0	0	0	22	1761	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
KCNIP1	DDB2	+/.	+/.	5:170676141	11:47233105	intron	intron	translocation/5'-5'	0	0	0	2	341	low	.	.	.	.	.	ENSG00000182132	ENSG00000134574	.	.	downstream	downstream	mismatches(2)	.	.	.
UBE2W	AC090227.3(20175),ACAA2(19926)	-/.	./.	8:73820102	18:49762238	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC013762.1	5_8S_rRNA(2692),FP236383.3(121018)	-/.	./.	11:13058343	21:8259625	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255558	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LIN52(32938),VSX2(5276)	PPP1R9B(273),AC015909.2(7383)	./.	./.	14:74234173	17:50150950	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(3)	.	.	.
LINC02223	GDF15	+/.	+/.	5:17941479	19:18380295	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249937	ENSG00000130513	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
WDR72	DOP1B	-/.	+/.	15:53648351	21:36250160	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000166415	ENSG00000142197	.	.	upstream	downstream	mismatches(1)	.	.	.
PEBP4	FBXW5	-/.	-/.	8:22777915	9:136943086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134020	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CCDC62	SULF2	+/.	-/.	12:122780924	20:47757536	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000130783	ENSG00000196562	.	.	upstream	upstream	mismatches(1)	.	.	.
RPSAP52	PCDH9	-/.	-/.	12:65767071	13:66765961	intron	intron	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000241749	ENSG00000184226	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092266.1(110147),LSINCT5(340421)	AC007535.1	./.	+/.	5:2372170	12:13586517	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000287928	.	.	downstream	downstream	mismatches(1)	.	.	.
MTURN	LINC02686(7283),Y_RNA(186410)	+/+	./-	7:30135057	11:24269501	5'UTR	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000180354	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01006	MICAL3	-/.	-/.	7:156440905	22:17796198	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182648	ENSG00000243156	.	.	upstream	upstream	mismatches(1)	.	.	.
PTHLH	FP671120.4	-/.	+/.	12:27970462	21:8211701	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087494	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392819	1:90392828	intron	intron	duplication/ITD	0	0	0	312	308	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC00602(19586),GAPDHP72(49304)	AC122688.4(18605),TMEM132B(3313)	./.	./.	6:166009201	12:125183523	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001042.3	AC021820.1(17978),AC080100.1(4749)	+/+	./-	21:38857886	11:40102495	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000287082	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FBRSL1	5_8S_rRNA(2097),FP236383.3(121613)	+/.	./.	12:132524117	21:8259030	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000112787	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SAMD12	Y_RNA(7440),AC245102.1(5669)	-/.	./.	8:118554925	X:53332114	intron	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	.	.	.	downstream	downstream	mismatches(1)	.	.	.
UTS2(32674),TNFRSF9(29685)	AC005833.1	./.	+/.	1:7886186	12:4719198	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000255639	.	.	downstream	upstream	mismatches(1)	.	.	.
NDUFC1	GNAQ	-/.	-/.	4:139295700	9:77888450	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000156052	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004869.1(133102),HMGN1P19(19934)	AC005144.1	./.	-/.	7:46614680	17:71867077	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000283517	.	.	downstream	upstream	mismatches(1)	.	.	.
GCNT2	GABPA(83314),APP(24776)	+/.	./.	6:10627254	21:25855774	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SUSD5(52300),FBXL2(5915)	SPPL2B	./.	+/.	3:33271110	19:2338920	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000005206	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFC1	OR4N2	-/.	+/.	4:139295700	14:19823208	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000176294	.	.	upstream	upstream	mismatches(1)	.	.	.
MRPL13	XYLT1	-/.	-/.	8:120418520	16:17213902	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172172	ENSG00000103489	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L8	MTRNR2L8	-/.	-/.	11:10508409	11:10508684	5'UTR	5'UTR	inversion/3'-3'	0	0	0	70	8	low	.	.	.	.	.	ENSG00000255823	ENSG00000255823	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02609	AC013565.1	-/.	+/.	1:90839715	15:89059781	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000233593	ENSG00000260123	.	.	upstream	downstream	mismatches(1)	.	.	.
USP24	LIPI	-/.	-/.	1:55122262	21:14210202	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162402	ENSG00000188992	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4490),AP001994.1(77191)	FP236383.3	./.	+/.	11:119744113	21:8414018	intergenic	intron	translocation	0	0	0	3583	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
NDUFC1	ZFR	-/.	-/.	4:139295700	5:32432352	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000056097	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFC1	AC073332.1	-/.	-/.	4:139295702	7:17102798	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000237773	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	CACNA1I	+/.	+/.	21:8442058	22:39592309	intron	intron	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000100346	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFC1	LINC02686(7283),Y_RNA(186410)	-/.	./.	4:139295701	11:24269501	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109390	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PTPRS	CSTP1(37811),AL133466.1(13820)	-/.	./.	19:5311385	20:23966765	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000105426	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP3K7(258467),AL080284.1(544774)	LRRC4C	./.	-/.	6:90845539	11:41021153	intergenic	intron	translocation	0	0	0	9	632	low	.	.	.	.	.	.	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
AC122688.4(18607),TMEM132B(3311)	IFNL2(2694),IFNL1(23525)	./.	./.	12:125183525	19:39272882	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA2012	AL163974.1(22793),LINC00523(45131)	+/.	./.	2:202083777	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4405),AP001994.1(77276)	AP003390.1(4503),AP001994.1(77178)	./.	./.	11:119744028	11:119744126	intergenic	intergenic	duplication/ITD	0	0	0	3752	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
JAZF1	AL512357.2(6022),AL512357.1(75587)	-/.	./.	7:27940302	14:104300943	intron	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000153814	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RHOBTB1	FP236383.3	-/.	+/.	10:60901773	21:8397433	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000072422	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC005699.1	CDC42EP1	+/.	+/.	4:11719946	22:37562623	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000249631	ENSG00000128283	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00692(18212),RPEP2(123709)	AP001605.1	./.	-/.	3:25891960	21:27406342	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000231236	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CPQ	FP236383.3	+/.	+/.	8:96792729	21:8444816	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000104324	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104123.1	GLP2R	+/.	+/.	5:96361270	17:9862138	intron	intron	translocation/3'-3'	0	0	0	0	28	low	.	.	.	.	.	ENSG00000251314	ENSG00000065325	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01036	SLIT3	+/.	-/.	1:187284496	5:169074016	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000230426	ENSG00000184347	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC093627.22	RTEL1-TNFRSF6B	-/.	+/.	7:117610	20:63683594	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000026036	.	.	upstream	downstream	mismatches(1)	.	.	.
ABCB1	KRT19P4(10030),PBLD(11131)	-/.	./.	7:87589088	10:68271529	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000085563	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SLC51A	HAR1A(1093),AL096828.6(10739)	+/.	./.	3:196214977	20:63105479	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000163959	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RHOBTB1	FP671120.4	-/.	+/.	10:60901773	21:8214395	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000072422	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
DLG2	AL139383.1	-/.	-/.	11:85484187	13:33517096	intron	intron	translocation	0	0	0	279	2	low	.	.	.	.	.	ENSG00000150672	ENSG00000230490	.	.	upstream	downstream	homopolymer(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262467	6:42262482	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(14),low_entropy(23),merge_adjacent	.	.	.
LINC01811	PTMAP5(940762),AL445255.1(146374)	+/.	./.	3:34606612	13:82631834	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000226320	.	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5437),ZNF669(8458)	./.	./.	1:247091449	1:247091504	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL008626.1(48216),RPS29P4(44015)	CSTP1(37812),AL133466.1(13819)	./.	./.	1:175253065	20:23966766	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL162151.3	AAR2(382),DLGAP4(35036)	+/+	./+	14:98999719	20:36271300	exon	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000287991	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GLIS1	EYA2	-/.	+/.	1:53520303	20:47029375	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000174332	ENSG00000064655	.	.	downstream	downstream	mismatches(1)	.	.	.
LMCD1-AS1	MATR3	-/.	+/.	3:8367209	5:139294442	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227110	ENSG00000280987	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683456	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
FAT1	MT-RNR1	-/.	+/.	4:186598220	MT:1374	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000083857	ENSG00000211459	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
MEGF6	AC109492.1	-/.	+/.	1:3505496	5:86980215	CDS	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000162591	ENSG00000249061	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022748.2	LSM14B	+/.	+/.	15:78672957	20:62131771	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261303	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
UTRN	RPSAP52	+/.	-/.	6:144823830	12:65767071	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000152818	ENSG00000241749	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNH2	AC010967.1	-/-	-/-	7:150947790	2:52766118	CDS	intron	translocation	0	0	0	0	0	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	ENSG00000228033	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CTNNA3	FP671120.4	-/.	+/.	10:67222695	21:8206534	intron	intron	translocation	0	0	0	4	9	low	.	.	.	.	.	ENSG00000183230	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SL97P(34670),AC027229.1(100014)	RN7SL97P(34744),AC027229.1(99940)	./.	./.	18:25853202	18:25853276	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RN7SKP247(8102),ADGRL2(45949)	PPFIBP2	./.	+/.	1:81260198	11:7554252	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000166387	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC01743	AP002892.1	-/.	+/.	1:246516287	11:72358541	exon	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000242042	ENSG00000255672	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KCNIP1	FP671120.4	+/.	+/.	5:170576935	21:8214690	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000182132	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC010148.1	DTNA	-/.	+/.	2:234815302	18:34571660	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235726	ENSG00000134769	.	.	downstream	downstream	mismatches(1)	.	.	.
SFN(3787),GPN2(7889)	SFN(3851),GPN2(7825)	./.	./.	1:26868243	1:26868307	intergenic	intergenic	duplication/ITD	0	0	0	80	79	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
THAP12	FP671120.4	-/.	+/.	11:76380677	21:8214782	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000137492	ENSG00000278996	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
MTHFD1	FP236383.3	+/.	+/.	14:64410913	21:8392866	intron	intron	translocation	0	0	0	11	43	low	.	.	.	.	.	ENSG00000100714	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	SLC23A2	./.	-/.	5:175198325	20:4867701	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000089057	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
MTHFD1	FP671120.3(3892),FP671120.7(551)	+/.	./.	14:64410913	21:8254041	intron	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000100714	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NXF2(27555),AC235565.2(6118)	NXF2(27650),AC235565.2(6023)	./.	./.	X:102354277	X:102354372	intergenic	intergenic	duplication/ITD	0	0	0	0	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(19),low_entropy(8)	.	.	.
TMEM38B(20560),SLC25A6P5(52521)	ZNF335	./.	-/.	9:105797189	20:45971848	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000198026	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	9:106864044	9:106864054	intron	intron	duplication/ITD	0	0	0	38	27	low	.	.	.	.	.	ENSG00000148143	ENSG00000148143	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC091182.1(10752),AC091182.2(62696)	PCSK6	./.	-/.	8:37342743	15:101488986	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000140479	.	.	upstream	upstream	mismatches(1)	.	.	.
INTS4	AL159158.1(38911),SCEL(73916)	-/.	./.	11:77886437	13:77461758	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000149262	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	5:20674825	5:20674834	intron	intron	duplication/ITD	0	0	0	37	33	low	.	.	.	.	.	ENSG00000251629	ENSG00000251629	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	5:20674834	5:20674843	intron	intron	duplication/ITD	0	0	0	37	37	low	.	.	.	.	.	ENSG00000251629	ENSG00000251629	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP671120.6	AL138740.1	-/-	-/+	21:8210559	6:17094067	exon	intron	translocation/5'-5'	0	0	0	16	1	low	.	.	.	.	.	ENSG00000280800	ENSG00000287359	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010967.1	KIAA2012	-/.	+/.	2:52766118	2:202083776	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228033	ENSG00000182329	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C1orf35	RHBDL3	-/-	+/+	1:228102036	17:32265976	exon	5'UTR	translocation	0	0	0	10	0	low	.	.	Multiple_myeloma_tumor-associated(100%)|EF-hand_domain_pair(100%),Rhomboid_family(100%)	.	.	ENSG00000143793	ENSG00000141314	.	.	upstream	upstream	homopolymer(1)	.	.	.
RNU1-76P(12131),AC116361.1(19942)	IGSF9B(2730),LINC02730(48517)	./.	./.	5:7992435	11:133959698	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262483	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
G6PC2	DHFR	+/.	-/.	2:168903786	5:80651216	intron	intron	translocation/3'-3'	0	0	0	0	128	low	.	.	.	.	.	ENSG00000152254	ENSG00000228716	.	.	upstream	downstream	duplicates(6),mismatches(1)	.	.	.
SLC2A9	FP671120.4	-/.	+/.	4:9774828	21:8217327	intron	intron	translocation/3'-3'	0	0	0	15	4	low	.	.	.	.	.	ENSG00000109667	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002487.1(4288),C7orf66(158086)	AC002487.1(4343),C7orf66(158031)	./.	./.	7:108725889	7:108725944	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ASTN1	FP236383.3	-/.	+/.	1:176897681	21:8442051	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000152092	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8397299	MT:1699	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC008073.3	LINC02864	+/.	-/.	2:24156767	18:73168244	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276087	ENSG00000263711	.	.	upstream	upstream	mismatches(1)	.	.	.
MTND1P22(1347),AC107208.1(30940)	MT-RNR2	./.	+/.	4:155465170	MT:2442	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262435	6:42262450	intron	intron	duplication/ITD	0	0	0	14	1	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02235	FP236383.3	+/.	+/.	8:81842488	21:8389581	intron	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000254689	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC239859.3(831),AC239859.4(10145)	FP671120.4	./.	+/.	1:143451076	21:8214713	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
AL136441.1	AP001599.1	-/.	+/.	13:76652643	21:26914103	intron	intron	translocation	0	0	0	3	167	low	.	.	.	.	.	ENSG00000285572	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC020718.1	STARP1(223670),HNRNPA3P5(253309)	-/.	./.	2:198941357	13:65534623	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231557	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3507),ELMOD1(681)	./.	./.	11:107590331	11:107590410	intergenic	intergenic	duplication/ITD	0	0	0	1909	1914	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
HBB	FP236383.3	-/.	+/.	11:5225537	21:8442061	3'UTR	intron	translocation/3'-3'	0	0	0	91	6	low	.	.	.	.	.	ENSG00000244734	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
LINC02248	LINC01278	+/.	-/.	15:26410794	X:63407436	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000235160	ENSG00000235437	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL583804.1(2081),FMO7P(20032)	AC002460.2	./.	+/.	1:166454713	4:148834330	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000287292	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02864	GPCPD1	-/.	-/.	18:73168244	20:5604633	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000263711	ENSG00000125772	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02612	ST6GAL1	+/.	+/.	2:150617539	3:186937241	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000073849	.	.	upstream	upstream	mismatches(1)	.	.	.
WWC1	ZNF503-AS1	+/.	+/.	5:168337916	10:75249176	intron	intron	translocation/3'-3'	0	0	0	16	3	low	.	.	.	.	.	ENSG00000113645	ENSG00000226051	.	.	upstream	upstream	mismatches(1)	.	.	.
DENND5B	BPY2B	-/.	+/.	12:31477253	Y:24625532	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000170456	ENSG00000183795	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGEF17	AC133480.1(245486),AC090503.2(141627)	+/.	./.	11:73338453	12:72974330	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000110237	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8218866	21:8397825	intron	intron	inversion/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GPSM2	AC013489.2(9289),LINC01586(7715)	+/.	./.	1:108910306	15:88577851	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000121957	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LIPJ	ARHGEF17	+/.	+/.	10:88602547	11:73338453	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000204022	ENSG00000110237	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104051.1	FP236383.3	-/.	+/.	8:57677225	21:8397818	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000253322	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC25A48	FP236383.3	+/.	+/.	5:135775888	21:8394740	intron	intron	translocation	0	0	0	1	154	low	.	.	.	.	.	ENSG00000145832	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092999.1(88055),IQCJ-SCHIP1(2359)	AC084816.1	./.	+/.	3:158959876	12:22884940	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000256995	.	.	upstream	downstream	mismatches(1)	.	.	.
OSBPL10	AL163974.1(22793),LINC00523(45131)	-/.	./.	3:31803229	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000144645	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DTNBP1(49300),ARPC3P5(222424)	CDC14C(169446),AC091730.1(133237)	./.	./.	6:15712358	7:49096900	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214800	21:8214800	intron	intron	deletion/read-through	0	0	0	293	5263	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
PRUNE2	LINC02745	-/.	-/.	9:76808400	11:42029389	intron	intron	translocation/5'-5'	0	0	0	6	9	low	.	.	.	.	.	ENSG00000106772	ENSG00000255300	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	AP001599.1	+/.	+/.	21:8212034	21:26914103	intron	intron	duplication	0	0	0	20	167	low	.	.	.	.	.	ENSG00000278996	ENSG00000223563	.	.	upstream	downstream	duplicates(12),mismatches(2)	.	.	.
FP671120.4	FP671120.7(396),5_8S_rRNA(871)	+/.	./.	21:8211818	21:8255910	intron	intergenic	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LIMD1	MED15P7	+/.	-/.	3:45593628	22:15642070	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	ENSG00000234381	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGEF26-AS1	AL359715.3(61),RPL17P25(17095)	-/-	./+	3:154121333	6:80356920	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DACT2(25891),AL138918.1(29029)	GRIN2C	./.	-/.	6:168345668	17:74861329	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000161509	.	.	upstream	downstream	mismatches(1)	.	.	.
AL137009.1	ARHGEF17	+/.	+/.	6:118987980	11:73338453	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000253194	ENSG00000110237	.	.	upstream	downstream	mismatches(1)	.	.	.
CNTNAP5	RILPL1(604),MIR3908(2086)	+/.	./.	2:124529134	12:123534323	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000155052	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092345	11:88092444	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AC020718.1	BPY2B	-/.	+/.	2:198941356	Y:24625532	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000231557	ENSG00000183795	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF3CL	5_8S_rRNA(1691),FP236383.3(122019)	-/.	./.	16:28391222	21:8258624	intron	intergenic	translocation	0	0	0	6	44	low	.	.	.	.	.	ENSG00000205609	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683456	15:81683469	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC020718.1	BPY2C	-/.	-/.	2:198941356	Y:25044576	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000231557	ENSG00000185894	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005203.1	FP236383.3	-/.	+/.	18:4992677	21:8397823	intron	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	ENSG00000266268	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC01198(14969),LRCH1(22241)	LINC01198(15016),LRCH1(22194)	./.	./.	13:46530927	13:46530974	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
HECW2	LINC01484	-/.	-/.	2:196573623	5:173742753	intron	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000138411	ENSG00000253686	.	.	upstream	upstream	mismatches(1)	.	.	.
TLE4	FP236383.3	+/.	+/.	9:79572889	21:8399811	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
STX6	STX6	-/-	-/-	1:181023106	1:181023119	5'UTR	5'UTR	duplication/ITD	0	0	0	4	0	low	.	.	|SNARE_domain(100%),Syntaxin_6__N-terminal(100%)	.	.	ENSG00000135823	ENSG00000135823	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AIG1	MT-RNR2	+/.	+/.	6:143272834	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000146416	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
BTF3P15(35676),AL390123.1(91148)	FP671120.4	./.	+/.	10:109570666	21:8214690	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683455	15:81683470	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(25),low_entropy(11)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683455	15:81683470	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(25),low_entropy(11)	.	.	.
AL603839.4(3075),ZFP69(156)	WASHC3	./.	-/.	1:40477134	12:102035145	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000120860	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
THEMIS	AC027031.2(80998),OXR1(5576)	-/.	./.	6:127735530	8:106353900	intron	intergenic	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104465.1(74377),AC092810.3(31650)	AC104465.1(74426),AC092810.3(31601)	./.	./.	1:209075853	1:209075902	intergenic	intergenic	duplication/ITD	0	0	0	42	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683455	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(37),low_entropy(16)	.	.	.
JAKMIP2(22245),SPINK1(19552)	RN7SL167P(47384),AP002856.3(135209)	./.	./.	5:147805020	11:131051813	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ISCA1P2(11040),LINC02814(33483)	FP671120.4	./.	+/.	1:229053631	21:8216771	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
DNM3	FP671120.4	+/.	+/.	1:172034252	21:8210274	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000197959	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL157378.1(50260),AL078595.1(99819)	FP671120.4	./.	+/.	6:94244918	21:8217546	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683475	15:81683484	intron	intron	duplication/ITD	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(2)	.	.	.
RAP1BP2(61151),AC091804.1(377967)	KRT18P55	./.	-/.	3:104124733	17:28307146	intergenic	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683475	15:81683484	intron	intron	duplication/5'-5'	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683475	15:81683484	intron	intron	duplication/3'-3'	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683475	15:81683484	intron	intron	duplication/ITD	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(2)	.	.	.
GPR55	MT-RNR2	-/.	+/.	2:230948894	MT:2714	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000135898	ENSG00000210082	.	.	upstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
OTX2P2(39023),PABPC1P2(70370)	MTRNR2L12	./.	-/.	2:146517136	3:96618132	intergenic	5'UTR	translocation	0	0	0	0	80	low	.	.	.	.	.	.	ENSG00000269028	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL110292.1	FP236383.3	+/.	+/.	14:27207779	21:8397818	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000258081	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FHDC1	LINC00457	+/.	-/.	4:152965440	13:34467868	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000137460	ENSG00000225179	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGEF26-AS1	LINC01138	-/-	-/-	3:154121333	1:148351991	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	ENSG00000274020	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
PRMT8	PRMT8	+/.	+/.	12:3490676	12:3490689	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000111218	ENSG00000111218	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
LINC02233(557970),AC093853.1(186031)	RNA5-8SP6(606707),AC140113.4(235709)	./.	./.	4:160335798	Y:10807013	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TTLL3	AL954642.1(763),FAM157B(12980)	+/+	./+	3:9809808	9:138204088	5'UTR	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC084337.2	ZNF699(12033),ZNF559(1901)	+/.	./.	11:6496218	19:9321871	intron	intergenic	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AL645474.1(51054),AL136372.2(247853)	CTNND2	./.	-/.	1:187765789	5:11595851	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000169862	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683475	15:81683484	intron	intron	duplication	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
FP671120.4	FP671120.7(395),5_8S_rRNA(872)	+/.	./.	21:8206527	21:8255909	intron	intergenic	deletion/read-through	0	0	0	4	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NDUFAF4(8228),RN7SL509P(8580)	OR1L1(2298),OR1L3(10090)	./.	./.	6:96906119	9:122664946	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683475	15:81683484	intron	intron	duplication/ITD	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(2)	.	.	.
CDK11B	C5orf38(7805),AC116359.1(24249)	-/.	./.	1:1642253	5:2763202	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000248333	.	.	.	downstream	downstream	mismatches(1)	.	.	.
USP9YP34	USP9YP34	+/.	+/.	Y:17992369	Y:17992416	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000233378	ENSG00000233378	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC099520.1	HYDIN	-/.	-/.	5:105215899	16:71158143	intron	intron	translocation/3'-3'	0	0	0	0	54	low	.	.	.	.	.	ENSG00000251574	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC02609	DPYSL3(24771),JAKMIP2-AS1(25155)	-/.	./.	1:90839715	5:147534839	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000233593	.	.	.	upstream	upstream	mismatches(1)	.	.	.
USP9YP6	USP9YP6	-/.	-/.	Y:17913564	Y:17913573	intron	intron	duplication/ITD	0	0	0	26	24	low	.	.	.	.	.	ENSG00000226116	ENSG00000226116	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
Z93929.1(11441),MDM4P1(21575)	Z93929.1(11450),MDM4P1(21566)	./.	./.	X:17911774	X:17911783	intergenic	intergenic	duplication/ITD	0	0	0	24	24	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SORCS3	SORCS3	+/.	+/.	10:104794599	10:104794651	intron	intron	duplication/ITD	0	0	0	13	12	low	.	.	.	.	.	ENSG00000156395	ENSG00000156395	.	.	upstream	downstream	low_entropy(6)	.	.	.
AL138976.2(1161),EIF5(16)	TNPO2	./-	-/-	14:103333528	19:12706109	intergenic	CDS/splice-site	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000105576	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8209831	21:8397824	intron	intron	inversion/3'-3'	0	0	0	48	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683456	15:81683469	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC02629(156849),PARD3(34907)	AC012470.1(34632),CCDC172(8745)	./.	./.	10:34074653	10:116315703	intergenic	intergenic	inversion	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
C1orf35	NKX2-5(3536),Y_RNA(15343)	-/-	./-	1:228102036	5:173238847	exon	intergenic	translocation	0	0	0	10	0	low	.	.	Multiple_myeloma_tumor-associated(100%)|	.	.	ENSG00000143793	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AL161910.1	AP001599.1	-/-	+/-	9:89603046	21:26914102	exon	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000285907	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
P2RY1(146379),HMGN2P13(79460)	AL160313.1	./.	+/.	3:152987818	14:99606117	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000247970	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479900	X:133661638	intron	intron	translocation/3'-3'	0	0	0	2216	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
Z82209.2(161645),AL662814.1(66994)	Z82209.2(161694),AL662814.1(66945)	./.	./.	X:127556416	X:127556465	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC112242.1(11775),AC097375.2(1894)	FP236383.3	./.	+/.	4:151903038	21:8442047	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC008558.1(46882),HTR1A(339375)	AKAP6(7820),AL049781.1(33742)	./.	./.	5:63618499	14:32845504	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105252.1(292282),AC079380.1(3756)	TPD52L2	./.	+/.	4:133867490	20:63886253	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000101150	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	DACH2	+/.	+/.	21:8211456	X:86655735	intron	intron	translocation	0	0	0	1	7	low	.	.	.	.	.	ENSG00000278996	ENSG00000126733	.	.	upstream	downstream	mismatches(1)	.	.	.
ASB3	ASB3	-/.	-/.	2:53594556	2:53594567	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000115239	ENSG00000115239	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8207209	21:8438948	intron	intron	deletion/read-through	0	0	0	4	139	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
U3(104495),GPC1(41725)	BRD1(230),Z98885.2(4707)	./.	./.	2:240393938	22:49827742	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NTN1	NTN1	+/.	+/.	17:9166151	17:9166161	intron	intron	duplication/ITD	0	0	0	289	233	low	.	.	.	.	.	ENSG00000065320	ENSG00000065320	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LINC02794	LINC00882	+/.	-/.	1:48055750	3:106821119	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226133	ENSG00000242759	.	.	upstream	upstream	mismatches(1)	.	.	.
AC108681.1(18141),AC068295.1(109365)	LINC02864	./.	-/.	3:187823399	18:73168244	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	downstream	upstream	duplicates(4),mismatches(4)	.	.	.
AC044873.1(14233),AC091027.2(97724)	KIF16B	./.	-/.	18:78810905	20:16361944	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000089177	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL355337.1	HIVEP2	+/.	-/.	6:142677294	6:142926967	intron	intron	duplication/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000287084	ENSG00000010818	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02864	JADE3	-/.	+/.	18:73168244	X:46913244	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000263711	ENSG00000102221	.	.	upstream	downstream	mismatches(1)	.	.	.
MACROD1	FP236383.3	-/.	+/.	11:64019103	21:8397838	intron	intron	translocation/5'-5'	0	0	0	0	5614	low	.	.	.	.	.	ENSG00000133315	ENSG00000280441	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	JADE3	./.	+/.	3:95431526	X:46913244	intergenic	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	.	ENSG00000102221	.	.	downstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392796	1:90392811	intron	intron	duplication/ITD	0	0	0	308	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
KIAA2012-AS1	ENOSF1	-/.	-/.	2:202083777	18:700995	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000132199	.	.	downstream	upstream	mismatches(1)	.	.	.
CEACAM5	FP671120.4	+/.	+/.	19:41717927	21:8214782	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000105388	ENSG00000278996	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
OCIAD2(9622),RNU6-158P(16196)	ABHD2	./.	+/.	4:48916559	15:89133592	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000140526	.	.	upstream	downstream	mismatches(1)	.	.	.
DUX4L23(1689),DUX4L22(353)	DUX4L23(1781),DUX4L22(261)	./.	./.	10:133676706	10:133676798	intergenic	intergenic	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	MIR3142HG	./.	+/.	3:95431526	5:160454148	intergenic	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	.	ENSG00000253522	.	.	downstream	upstream	mismatches(1)	.	.	.
EIF2AK4	LINC02864	+/.	-/.	15:40029097	18:73168244	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000128829	ENSG00000263711	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104465.1(74377),AC092810.3(31650)	AC104465.1(74422),AC092810.3(31605)	./.	./.	1:209075853	1:209075898	intergenic	intergenic	duplication/ITD	0	0	0	42	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	EIF2AK4	./.	+/.	3:95431526	15:40029097	intergenic	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	.	ENSG00000128829	.	.	downstream	downstream	mismatches(1)	.	.	.
OCIAD2(9623),RNU6-158P(16195)	LINC02864	./.	-/.	4:48916560	18:73168244	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	GPCPD1	./.	-/.	3:95431526	20:5604633	intergenic	intron	translocation	0	0	0	45	4	low	.	.	.	.	.	.	ENSG00000125772	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP236383.3(935),FP236383.11(6593)	./.	./.	21:8255893	21:8455727	intergenic	intergenic	inversion	0	0	0	143	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
HERPUD2	NGB	-/.	-/.	7:35674404	14:77269724	intron	intron	translocation/5'-5'	0	0	0	21	87	low	.	.	.	.	.	ENSG00000122557	ENSG00000165553	.	.	upstream	upstream	low_entropy	.	.	.
AC008268.1(53436),GPAT2P1(67491)	FP236383.3	./.	+/.	2:95722163	21:8397835	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AL513324.1	MTRNR2L1	-/-	+/+	10:117826272	17:22523559	exon/splice-site	5'UTR	translocation	0	0	0	0	1	low	.	.	|Humanin_family(100%)	.	.	ENSG00000263041	ENSG00000256618	.	.	upstream	upstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749082	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02864	DOCK11	-/.	+/.	18:73168244	X:118541248	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000263711	ENSG00000147251	.	.	upstream	upstream	mismatches(1)	.	.	.
KRT8P27(3758),GRPEL2P2(69547)	ZIC3	./.	+/.	X:64628331	X:137574882	intergenic	intron	duplication	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000156925	.	.	upstream	downstream	mismatches(1)	.	.	.
AC091804.1(832267),ALCAM(31376)	AC044860.1	./.	-/.	3:105335533	15:85190992	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000229212	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC023632.3(700),AC023632.4(3452)	RPL12P4(19716),LINC01440(314042)	./.	./.	8:94590959	20:55094856	intergenic	intergenic	translocation	0	0	0	22	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
C12orf65	KRT8P17(4589204),SSBL2P(203913)	+/.	./.	12:123233994	X:62575337	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000130921	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051962	1:161052060	intron	intron	duplication/ITD	0	0	0	66	80	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(4)	.	.	.
AC008073.3	RPS18P6(259149),MTHFD2P1(222897)	+/.	./.	2:24156767	3:95431526	intron	intergenic	translocation	0	0	0	0	45	low	.	.	.	.	.	ENSG00000276087	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9787),AC108063.2(20068)	./.	./.	4:16094104	4:16094165	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC138123.1	5_8S_rRNA(2096),FP236383.3(121614)	-/.	./.	12:93171583	21:8259029	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000257322	.	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
CDH8	FP236383.3	-/.	+/.	16:61831043	21:8437076	intron	intron	translocation/3'-3'	0	0	0	57	55	low	.	.	.	.	.	ENSG00000150394	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RP1L1(7767),SOX7(3814)	LINC02864	./.	-/.	8:10719954	18:73168244	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGAP30	AP000255.1(48392),TPT1P1(55542)	-/.	./.	1:161059767	21:31784799	intron	intergenic	translocation	0	0	0	31	58	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
AL591222.3(180984),AL512635.1(182468)	FP236383.3	./.	+/.	9:20148978	21:8397831	intergenic	intron	translocation	0	0	0	2	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01036	FP236383.3	+/.	+/.	1:187443964	21:8442051	exon	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000230426	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL34P31(1845),RPS16P8(4160)	KRT18P55	./.	-/.	17:27276322	17:28307146	intergenic	exon	inversion	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479907	intergenic	intron	translocation	0	0	0	14	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
CHD4	LINC02864	-/-	-/+	12:6606525	18:73168244	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111642	ENSG00000263711	.	.	upstream	upstream	mismatches(1)	.	.	.
CHD4	RPS18P6(259149),MTHFD2P1(222897)	-/-	./-	12:6606525	3:95431526	5'UTR	intergenic	translocation	0	0	0	0	45	low	.	.	.	.	.	ENSG00000111642	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC25A15P2	LARGE1	+/.	-/.	13:19412230	22:33771304	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000237164	ENSG00000133424	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SORCS3	SORCS3	+/.	+/.	10:104794597	10:104794628	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000156395	ENSG00000156395	.	.	upstream	downstream	low_entropy(1)	.	.	.
RGMB	AC093655.1(158441),AC004910.1(162681)	+/.	./.	5:98771438	7:68478117	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.6	RNY1P8(102917),AL162376.1(68854)	-/-	./-	21:8210519	13:73330177	exon	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4432HG	CENPP	-/-	+/+	2:60352154	9:92531734	exon	intron	translocation	0	0	0	0	4	low	.	.	|CENP-A-nucleosome_distal_(CAD)_centromere_subunit__CENP-P(51%)	.	.	ENSG00000228590	ENSG00000188312	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022826.2	FP236383.3	-/.	+/.	8:73820108	21:8397434	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000258677	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
AL627316.1(81781),LINC02787(8733)	ECM2	./.	-/.	1:90502177	9:92531734	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000106823	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPL28	ADAMTS5(58793),GPX1P2(117463)	+/+	./+	19:55386174	21:27025881	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108107	.	.	.	downstream	upstream	duplicates(3),homopolymer(2)	.	.	.
DDTP1	PTCSC2	-/-	-/-	3:38515755	9:97773399	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000230683	ENSG00000236130	.	.	upstream	downstream	mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	CORO2B	./.	+/.	4:25088518	15:68630255	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000103647	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AL136309.1(85776),AL162718.1(29360)	KDM4C	./.	+/.	6:4275582	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2077),FP236383.3(121633)	+/.	./.	21:8214807	21:8259010	intron	intergenic	deletion/read-through	0	0	0	6035	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	low_entropy	.	.	.
AL391294.1	AC064801.2	-/-	+/+	X:81003948	18:62551950	exon	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000284618	ENSG00000279236	.	.	upstream	upstream	mismatches(1)	.	.	.
IL15(110188),INPP4B(178985)	TBXT	./.	-/.	4:141844175	6:166166388	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164458	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
NPAS3	FRMD6-AS2	+/.	-/.	14:33490812	14:51587852	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151322	ENSG00000258537	.	.	upstream	upstream	mismatches(1)	.	.	.
AC106870.3	AGAP1	-/.	+/.	2:29845744	2:235775619	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288553	ENSG00000157985	.	.	upstream	upstream	mismatches(1)	.	.	.
SPAG16	AL158850.1	+/.	-/.	2:213290005	6:139184415	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144451	ENSG00000272446	.	.	upstream	downstream	mismatches(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	LINC01897(19536),HMGN1P30(34824)	./.	./.	14:100612119	18:57983970	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3434),ELMOD1(754)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590337	14:106419138	intergenic	intergenic	translocation	0	0	0	1909	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
GPS1	AP001599.1	+/.	+/.	17:82055704	21:26914103	exon	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000169727	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	ZIC5	+/.	-/.	2:32916416	13:99971192	intron	CDS	translocation/3'-3'	0	0	0	19	12	low	.	.	.	.	.	ENSG00000230876	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
SPAG16	AL390791.1(96458),PCNPP2(70713)	+/.	./.	2:213290005	9:88900174	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144451	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022384.1	VWA8	+/.	-/.	3:10249513	13:41961032	CDS	5'UTR	translocation/3'-3'	1	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000102763	.	.	upstream	downstream	min_support	.	.	.
LINC02123(10556),AC027343.1(3752)	BCAS3	./.	+/.	5:7359227	17:61252381	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000141376	.	.	upstream	upstream	mismatches(1)	.	.	.
GPR39	LINC00240(55),VN1R13P(561)	+/.	./.	2:132557876	6:27059804	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	.	.	.	downstream	upstream	mismatches(1)	.	.	.
STK10	MPP5	-/.	+/.	5:172090368	14:67301864	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000072786	ENSG00000072415	.	.	downstream	downstream	mismatches(1)	.	.	.
SLIT1	CRTAC1	-/.	-/.	10:97179803	10:98026055	intron	intron	inversion/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000187122	ENSG00000095713	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
E4F1	JAZF1	+/+	-/+	16:2234342	7:27996342	CDS	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(79%)|	.	.	ENSG00000167967	ENSG00000153814	.	.	downstream	upstream	mismatches(1)	.	.	.
PAX3	MACROD2	-/.	+/.	2:222298765	20:14179636	5'UTR	intron	translocation/3'-3'	0	0	0	17	2	low	.	.	.	.	.	ENSG00000135903	ENSG00000172264	.	.	downstream	upstream	homopolymer(1)	.	.	.
ATR	LETM2	-/.	+/.	3:142462337	8:38386812	intron	5'UTR	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000175054	ENSG00000165046	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC006499.7(80993),AC110768.2(34424)	FIG4	./.	+/.	4:10376572	6:109865836	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000112367	.	.	downstream	downstream	mismatches(1)	.	.	.
PTGDS	FP236383.3	+/+	+/+	9:136980150	21:8397824	exon	intron	translocation	0	0	0	4	1126	low	.	.	Lipocalin_/_cytosolic_fatty-acid_binding_protein_family(75%)|	.	.	ENSG00000107317	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009161.1(206459),AC009110.1(32167)	5_8S_rRNA(1691),FP236383.3(122019)	./.	./.	16:62564205	21:8258624	intergenic	intergenic	translocation	0	0	0	21	44	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683461	15:81683470	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
AC024587.1	SINHCAF	+/+	-/+	5:107725999	12:31326427	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248827	ENSG00000139146	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8218872	21:8397819	intron	intron	inversion/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC7	POM121C	+/+	-/-	1:91511821	7:75458117	CDS/splice-site	intron	translocation	0	0	0	0	0	low	.	.	Protein_kinase_domain(39%)|POM121_family(100%)	.	.	ENSG00000097046	ENSG00000272391	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS1	UPRT	-/-	+/-	12:117265423	X:75223384	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	ENSG00000094841	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
NXF2(27604),AC235565.2(6069)	NXF2(27616),AC235565.2(6057)	./.	./.	X:102354326	X:102354338	intergenic	intergenic	duplication/ITD	0	0	0	75	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
PAXBP1(58),C21orf62-AS1(250)	PAXBP1(68),C21orf62-AS1(240)	./.	./.	21:32771850	21:32771860	intergenic	intergenic	duplication/ITD	0	0	0	445	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KIF18BP1(8106),AC106785.1(68982)	FP236383.3	./.	+/.	16:35653286	21:8446140	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SMYD2	AC091167.6	+/.	+/.	1:214296555	15:90270297	intron	intron	translocation/3'-3'	0	0	0	14	14	low	.	.	.	.	.	ENSG00000143499	ENSG00000275674	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC139491.3	LIMD1	+/+	+/+	5:176036749	3:45593628	exon	intron	translocation	0	0	0	0	0	low	.	.	|LIM_domain(100%)	.	.	ENSG00000250992	ENSG00000144791	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC113367.2(131990),HINT1(14651)	AL355836.3	./.	-/.	5:131140732	14:101193603	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000288245	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SYNDIG1	FP236383.3	+/.	+/.	20:24618126	21:8438949	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000101463	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP002963.1(53404),AP003973.4(82871)	GOLGA8B	./.	-/.	11:110930581	15:34557564	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000215252	.	.	upstream	downstream	mismatches(1)	.	.	.
AP002963.1(53404),AP003973.4(82871)	GOLGA8A	./.	-/.	11:110930581	15:34411342	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175265	.	.	upstream	downstream	mismatches(1)	.	.	.
AMY2B(3344),AMY2A(33933)	MT-RNR1	./.	+/.	1:103582878	MT:950	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459	.	.	upstream	upstream	duplicates(2),uninteresting_contigs(2)	.	.	.
AC006486.3	KRT8P27(3759),GRPEL2P2(69546)	-/.	./.	19:42217199	X:64628332	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000288671	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
GAPDHP36(89380),RALBP1P1(20619)	PRUNE2	./.	-/.	3:180302488	9:76808400	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000106772	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01194(95165),LINC02220(14540)	APBA2	./.	+/.	5:12899528	15:29078666	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000034053	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NKAIN3	AC015943.1	+/.	-/.	8:62521183	17:54640876	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185942	ENSG00000288036	.	.	upstream	downstream	mismatches(1)	.	.	.
ERI3	LARP1	-/.	+/.	1:44320094	5:154755363	intron	intron	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000155506	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
TRBV24OR9-2(9414),TRBV25OR9-2(3138)	RPL24P9(223684),AC074035.1(449955)	./.	./.	9:33659028	X:4177245	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MLLT10(12025),DNAJC1(893)	AC027369.3	./.	-/.	10:21755655	11:48897757	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000254728	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01517(267117),LYZL1(80034)	AP002963.1(53404),AP003973.4(82871)	./.	./.	10:29209027	11:110930581	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NAALADL2	AL035079.1(18426),CIR1P3(7505)	+/.	./.	3:175349066	11:34423375	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177694	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MUC5B	CAMTA1	+/+	+/-	11:1249405	1:7335168	CDS	intron	translocation/5'-5'	1	0	0	47	0	low	.	.	C8_domain(75%),Mucin-2_protein_WxxW_repeating_region(92%),Trypsin_Inhibitor_like_cysteine_rich_domain(100%),von_Willebrand_factor_type_D_domain(72%)|	.	.	ENSG00000117983	ENSG00000171735	.	.	downstream	downstream	min_support	.	.	.
ELK2BP(9056),IGHA2(24981)	FP671120.4	./.	+/.	14:105558750	21:8214784	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ADCY1	DHRS4L2	+/.	+/.	7:45682481	14:23990296	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	ENSG00000187630	.	.	upstream	upstream	mismatches(1)	.	.	.
NUGGC	AP002963.1(53420),AP003973.4(82855)	-/.	./.	8:28059494	11:110930597	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000189233	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GRK5(27727),RGS10(12345)	KIRREL3	./.	-/.	10:119487472	11:126834720	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000149571	.	.	downstream	downstream	mismatches(1)	.	.	.
AL591519.1	RGN	+/.	+/.	6:93664789	X:47086735	intron	intron	translocation	0	0	0	15	40	low	.	.	.	.	.	ENSG00000287683	ENSG00000130988	.	.	downstream	upstream	duplicates(1)	.	.	.
CSAG3	CSAG3	+/.	+/.	X:152758797	X:152758880	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000268916	ENSG00000268916	.	.	upstream	downstream	low_entropy(1)	.	.	.
GPS2P2(74),AC112907.3(8230)	FP671120.4	./.	+/.	3:186773550	21:8214800	intergenic	intron	translocation	0	0	0	1	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP003390.1(4488),AP001994.1(77193)	CLMP	./.	-/.	11:119744111	11:123119081	intergenic	intron	inversion	0	0	0	3583	12	low	.	.	.	.	.	.	ENSG00000166250	.	.	downstream	downstream	low_entropy	.	.	.
KLHL42	AC093627.22	+/+	-/+	12:27798054	7:117610	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	BTB_And_C-terminal_Kelch(100%),Kelch_motif(100%)|	.	.	ENSG00000087448	ENSG00000287883	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749073	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
AC098817.1(272813),AC138623.1(79569)	AC098817.1(272826),AC138623.1(79556)	./.	./.	2:83139321	2:83139334	intergenic	intergenic	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15029),LRCH1(22181)	./.	./.	13:46530929	13:46530987	intergenic	intergenic	duplication/ITD	0	0	0	45	44	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(26),low_entropy(12)	.	.	.
UTS2(32675),TNFRSF9(29684)	CTBP2P4(34517),DDX18P4(67625)	./.	./.	1:7886187	5:98611777	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FO393413.1(58397),RNU7-65P(12609)	FO393413.1(58412),RNU7-65P(12594)	./.	./.	6:49332191	6:49332206	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
NGB	NGB	-/.	-/.	14:77269685	14:77269783	intron	intron	duplication/ITD	0	0	0	14	80	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
LINC01320	FP671120.4	+/.	+/.	2:33767489	21:8214396	intron	intron	translocation	0	0	0	72	540	low	.	.	.	.	.	ENSG00000228262	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
NPHP4	GRID1	-/.	-/.	1:5885358	10:86184329	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131697	ENSG00000182771	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683470	15:81683479	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683470	15:81683479	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
AL512638.2(11092),ELOCP20(64162)	LETM1	./.	-/.	1:115492664	4:1841520	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CDCP1	SLCO5A1	-/.	-/.	3:45092935	8:69690369	intron	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	ENSG00000163814	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3434),ELMOD1(754)	AP001823.1(3533),ELMOD1(655)	./.	./.	11:107590337	11:107590436	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
CHRNB3	FOXF1	+/+	+/+	8:42737021	16:86513761	3'UTR	3'UTR	translocation	0	0	0	4	0	low	.	.	Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)|	.	.	ENSG00000147432	ENSG00000103241	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH6	PLEC	+/.	-/.	2:84542580	8:143925379	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115423	ENSG00000178209	.	.	downstream	downstream	mismatches(1)	.	.	.
INPP4B	MT-RNR2	-/.	+/.	4:142713193	MT:1959	intron	exon	translocation/3'-3'	0	0	0	17	.	low	.	.	.	.	.	ENSG00000109452	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683459	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TLX1(30288),LINC01514(8229)	AP001599.1	./.	+/.	10:101168077	21:26914102	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
GAPDHP36(89380),RALBP1P1(20619)	AC128709.3(26249),LINC02012(11908)	./.	./.	3:180302488	3:197493354	intergenic	intergenic	duplication	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749049	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
HPN-AS1	DOK5(116942),RNU4ATAC7P(91577)	-/.	./.	19:35095527	20:54768111	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000227392	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SERTAD4	GLP2R	+/.	+/.	1:210234287	17:9862138	intron	intron	translocation	0	0	0	2	28	low	.	.	.	.	.	ENSG00000082497	ENSG00000065325	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
FMN2	AC008269.1	+/.	+/.	1:240200874	2:206862123	intron	intron	translocation/5'-5'	0	0	0	49	0	low	.	.	.	.	.	ENSG00000155816	ENSG00000229321	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
FP236383.3	PAXBP1(165),C21orf62-AS1(143)	+/.	./.	21:8448167	21:32771957	intron	intergenic	inversion	0	0	0	5	466	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	downstream	mismatches	.	.	.
KRT8P27(3758),GRPEL2P2(69547)	Z96074.1	./.	+/.	X:64628331	X:137574882	intergenic	intron	duplication	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000283692	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683459	15:81683470	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(2)	.	.	.
MTRNR2L8	FP236383.3	-/.	+/.	11:10508413	21:8441571	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000255823	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683462	15:81683471	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
RUFY4(18122),CXCR2(16586)	LINC02530(23826),PHACTR1(107324)	./.	./.	2:218108703	6:12609230	intergenic	intergenic	translocation	0	0	0	193	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC010970.1	CD55	-/-	+/+	Y:10198168	1:207361333	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225840	ENSG00000196352	.	.	upstream	upstream	mismatches(1)	.	.	.
CNTNAP5	MYL3	+/.	-/.	2:124283399	3:46866492	intron	5'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000155052	ENSG00000160808	.	.	downstream	downstream	mismatches(1)	.	.	.
B3GALNT1	FAT1(23081),AC108865.1(141166)	-/.	./.	3:161095875	4:186749803	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169255	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01381(6973),DNMT3A(11680)	SLC8A1	./.	-/.	2:25216175	2:40324047	intergenic	intron	duplication	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000183023	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683462	15:81683471	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683462	15:81683471	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
PDZPH1P	PDZPH1P	-/.	-/.	5:103482858	5:103482872	intron	intron	duplication/ITD	0	0	0	67	67	low	.	.	.	.	.	ENSG00000226926	ENSG00000226926	.	.	upstream	downstream	duplicates(65),low_entropy(2)	.	.	.
LMCD1-AS1	FP671120.4	-/.	+/.	3:8389579	21:8217546	intron	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000227110	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(3)	.	.	.
MGA	FP671120.4	+/.	+/.	15:41660249	21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000174197	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683462	15:81683471	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
BAG4(910),AC084024.4(9746)	BAG4(971),AC084024.4(9685)	./.	./.	8:38214211	8:38214272	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
HEYL(10045),NT5C1A(9433)	EFCAB14(21846),AL593856.1(1337)	./.	./.	1:39649688	1:46740992	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02663(164937),LINC02670(15725)	FP236383.3	./.	+/.	10:10042997	21:8441660	intergenic	intron	translocation	0	0	0	5	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683458	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
HTR3A(42047),ZBTB16(27351)	FP671120.4	./.	+/.	11:114032360	21:8214795	intergenic	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683463	15:81683472	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
PCDHA6	KCNQ1	+/.	+/.	5:140829928	11:2577441	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000081842	ENSG00000053918	.	.	upstream	upstream	mismatches(1)	.	.	.
ADAMTS20	LINC01538	-/.	-/.	12:43427398	18:64248608	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173157	ENSG00000266952	.	.	downstream	upstream	mismatches(1)	.	.	.
AL137785.1(39816),MPPE1P1(44525)	AP001599.1	./.	+/.	14:89065623	21:26914102	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683463	15:81683472	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
LYPD6(60748),MMADHC(34751)	AC128676.1(303218),RNU6-417P(432567)	./.	./.	2:149534886	7:62578896	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1369891	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683463	15:81683472	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
AL591004.1(13753),AL365503.1(232113)	NACA	./.	-/.	6:67224233	12:56725587	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000196531	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
USP9YP34	USP9YP34	+/.	+/.	Y:17992371	Y:17992421	intron	intron	duplication/ITD	0	0	0	11	11	low	.	.	.	.	.	ENSG00000233378	ENSG00000233378	.	.	upstream	downstream	duplicates(2),low_entropy(7)	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15021),LRCH1(22189)	./.	./.	13:46530929	13:46530979	intergenic	intergenic	duplication/ITD	0	0	0	45	45	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
5_8S_rRNA(2085),FP236383.3(121625)	FP236383.3	./.	+/.	21:8259018	21:8392868	intergenic	intron	inversion	0	0	0	5911	43	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AC021087.4(356),CCDC127(171)	FP236383.3	./.	+/.	5:196697	21:8442045	intergenic	intron	translocation	0	0	0	12	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AC022384.1	FP236383.3	+/.	+/.	3:10249514	21:8397830	CDS	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000272410	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
CRYBB2	CRYBB2	+/.	+/.	22:25218683	22:25218776	intron	intron	duplication/ITD	0	0	0	0	9	low	.	.	.	.	.	ENSG00000244752	ENSG00000244752	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC004840.1	FP671120.4	+/.	+/.	7:2383814	21:8214781	intron	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000230914	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
UBBP4	LIMD1	+/+	+/+	17:22090865	3:45593628	exon	intron	translocation	0	0	0	0	0	low	.	.	|LIM_domain(100%)	.	.	ENSG00000263563	ENSG00000144791	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAM228B	RPS18P6(259149),MTHFD2P1(222897)	+/.	./.	2:24156767	3:95431526	intron	intergenic	translocation	0	0	0	0	45	low	.	.	.	.	.	ENSG00000219626	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729375	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC021087.4(356),CCDC127(171)	FP236383.3	./.	+/.	5:196697	21:8397815	intergenic	intron	translocation	0	0	0	12	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
BAZ1B(439),BCL7B(13624)	RNU6-728P(25111),PLEKHA1(3792)	./.	./.	7:73522732	10:122370904	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL354702.1	GSE1	-/.	+/.	1:38786665	16:85260115	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000284632	ENSG00000131149	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
EPRS1	5_8S_rRNA(2692),FP236383.3(121018)	-/.	./.	1:219976244	21:8259625	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136628	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091078.1	FP236383.3	+/.	+/.	15:93232876	21:8397815	intron	intron	translocation/3'-3'	0	0	0	8	6042	low	.	.	.	.	.	ENSG00000257060	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
CNTFR(1703),RPP25L(18643)	TBL1Y	./.	+/.	9:34591843	Y:6911979	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000092377	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	7:116638063	7:116638077	intron	intron	duplication/ITD	0	0	0	63	0	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC011468.2	TBL1Y	-/.	+/.	19:52139576	Y:6911979	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000267827	ENSG00000092377	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL162417.1	HBB	-/.	-/.	9:133148051	11:5225537	intron	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	ENSG00000285245	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRAM1L1(78295),AC107399.1(86053)	FP671120.3(594),FP671120.7(3849)	./.	./.	4:117163871	21:8250743	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MFSD9	COL26A1	-/.	+/.	2:102719365	7:101499122	intron	intron	translocation	0	0	0	4	3	low	.	.	.	.	.	ENSG00000135953	ENSG00000160963	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF616	TBL1Y	-/.	+/.	19:52139576	Y:6911979	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000204611	ENSG00000092377	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
HAND2	AC114321.1(205469),AC026403.1(21397)	-/.	./.	4:173529806	5:166360908	5'UTR	intergenic	translocation	0	0	0	2	10	low	.	.	.	.	.	ENSG00000164107	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC010343.3(22686),AC025472.1(46427)	AC013489.2(9289),LINC01586(7715)	./.	./.	5:33320752	15:88577851	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104109.4	LSM14B	-/.	+/.	5:134225645	20:62131771	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273345	ENSG00000149657	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NFIB	MAGEA9(1737),MAGEA7P(18740)	-/.	./.	9:14353665	X:149789474	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000147862	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ADCY7	TBL1Y	+/.	+/.	16:50291021	Y:6911979	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000121281	ENSG00000092377	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
MUC17(4802),TRIM56(21820)	MUC17(4883),TRIM56(21739)	./.	./.	7:101063661	7:101063742	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KIAA2012-AS1	HBB	-/.	-/.	2:202083777	11:5225534	intron	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000222035	ENSG00000244734	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA2012	HBB	+/.	-/.	2:202083777	11:5225534	intron	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	ENSG00000182329	ENSG00000244734	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	HBB	./.	-/.	2:240393940	11:5225537	intergenic	3'UTR	translocation	0	0	0	357	91	low	.	.	.	.	.	.	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
ADGRB2	FGD5	-/.	+/.	1:31762935	3:14879261	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000121753	ENSG00000154783	.	.	upstream	upstream	mismatches(1)	.	.	.
TRPC7	H3P28(100180),AL355297.2(11600)	-/.	./.	5:136286731	6:156762617	intron	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000069018	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(119745),FP236383.3(3965)	FP236383.3	./.	+/.	21:8376678	21:8397821	intergenic	intron	deletion/read-through	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),read_through(3)	.	.	.
AC010967.1(152956),AC069157.2(356039)	AC091027.3(45389),LINC01896(2672)	./.	./.	2:53114408	18:78973883	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
UGT1A5	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000240224	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GPC6-AS2	GPC6	-/.	+/.	13:93833099	13:93833158	intron	intron	duplication/5'-5'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000224394	ENSG00000183098	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
GPC6	GPC6-AS2	+/.	-/.	13:93833099	13:93833158	intron	intron	duplication/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000183098	ENSG00000224394	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC239809.3	LGI2(57572),SEPSECS(31496)	-/.	./.	1:148184254	4:25088518	intron	intergenic	translocation	0	0	0	0	68	low	.	.	.	.	.	ENSG00000227733	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
MTURN	AHR	+/+	+/-	7:30135056	7:17102798	5'UTR	intron	inversion/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000180354	ENSG00000106546	.	.	downstream	downstream	mismatches(1)	.	.	.
POM121	LINC00351(70066),AL356413.1(79301)	+/.	./.	7:72932759	13:85614636	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000196313	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SPRED2	HK1	-/.	+/.	2:65359095	10:69318710	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198369	ENSG00000156515	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SNX16	FP671120.3(594),FP671120.7(3849)	-/.	./.	8:81842488	21:8250743	intron	intergenic	translocation	0	0	0	75	0	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC087379.2	XPO6(20),GAPDHP35(27708)	+/.	./.	11:15619572	16:28211985	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000254695	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PHRF1	FP236383.3	+/.	+/.	11:589569	21:8442060	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000070047	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ITIH5(434),ITIH2(35884)	SPECC1	./.	+/.	10:7667432	17:20090311	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000128487	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC01743	CHRDL1(2862),PAK3(145604)	-/.	./.	1:246516286	X:110798681	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242042	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZMAT4	5_8S_rRNA(2088),FP236383.3(121622)	-/.	./.	8:40888775	21:8259021	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000165061	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	5:93581672	5:93581685	intron	intron	duplication/ITD	0	0	0	2	4	low	.	.	.	.	.	ENSG00000237187	ENSG00000237187	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FBXW7	XACT(90624),AL953862.1(239075)	-/-	./-	4:152411374	X:114149913	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109670	.	.	.	upstream	downstream	mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	12:105046145	12:105046190	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000151131	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC100803.4	SPECC1	+/.	+/.	8:141434802	17:20090311	exon	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000271959	ENSG00000128487	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SORCS3	DDB2	+/.	+/.	10:104767706	11:47233103	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000156395	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
AC123777.1	RALGDS	-/.	-/.	8:12794050	9:133148049	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000254813	ENSG00000160271	.	.	downstream	upstream	mismatches(1)	.	.	.
SPPL2B	RPL12P4(19716),LINC01440(314042)	+/.	./.	19:2338920	20:55094856	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000005206	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BCRP9(38369),NPM1P22(2713)	GPM6B	./.	-/.	13:67829163	X:13937196	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000046653	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	DLG2	-/.	-/.	5:80650918	11:85484188	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000228716	ENSG00000150672	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AC100803.4	AP000721.2	+/.	+/.	8:141434802	11:64038954	exon	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000271959	ENSG00000256824	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL158064.1	SORL1	-/-	+/+	13:80074588	11:121479029	exon	intron	translocation	0	0	0	0	0	low	.	.	|Fibronectin_type_III_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%),Sortilin__neurotensin_receptor_3_(90%),Sortilin__neurotensin_receptor_3__C-terminal(100%)	.	.	ENSG00000284196	ENSG00000137642	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023347.1(105258),YWHAZP2(108185)	AC040970.1	./.	-/.	2:126449250	8:141129023	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000253210	.	.	downstream	upstream	mismatches(1)	.	.	.
CNTN3	ZIC3	-/.	+/.	3:74364752	X:137574881	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113805	ENSG00000156925	.	.	upstream	downstream	mismatches(1)	.	.	.
SSRP1	FP236383.3	-/.	+/.	11:57335798	21:8394736	5'UTR	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000149136	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
PODXL	PUM3	-/.	-/.	7:131541799	9:2813213	intron	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000128567	ENSG00000080608	.	.	upstream	upstream	mismatches(1)	.	.	.
ITPKB-AS1	EEF1B2P2(28127),LINC02219(1856)	+/.	./.	1:226675840	5:68188020	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000228548	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
RNU6-412P(73668),RAC1P2(118820)	AF279873.3(131690),AC087855.2(4092)	./.	./.	4:46605010	8:34170794	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC020978.7	MYLK	+/+	-/+	16:68227387	3:123671392	exon	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000263276	ENSG00000065534	.	.	downstream	upstream	mismatches(1)	.	.	.
ITPKB-AS1	ITIH5(434),ITIH2(35884)	+/.	./.	1:226675840	10:7667432	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000228548	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
WNT5B	5_8S_rRNA(2087),FP236383.3(121623)	+/.	./.	12:1530663	21:8259020	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000111186	.	.	.	upstream	upstream	mismatches(2)	.	.	.
FHIT	CBARP	-/.	-/.	3:61042064	19:1237715	5'UTR	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	ENSG00000099625	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683455	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(37),low_entropy(16)	.	.	.
AC010148.1	PLCB4	-/.	+/.	2:234815303	20:9168924	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235726	ENSG00000101333	.	.	downstream	upstream	mismatches(1)	.	.	.
ITPKB-AS1	AC100803.4	+/.	+/.	1:226675840	8:141434802	intron	exon	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000228548	ENSG00000271959	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ERI3	RACGAP1	-/.	-/.	1:44320094	12:49980140	intron	intron	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000161800	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
TLL1	ATP9A	+/.	-/.	4:166092988	20:51621788	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000038295	ENSG00000054793	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PCAT14(10845),AP000345.1(8422)	PCAT14(10906),AP000345.1(8361)	./.	./.	22:23558642	22:23558703	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SGCZ	FP236383.3	-/.	+/.	8:14216765	21:8390479	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185053	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC114321.1(205467),AC026403.1(21399)	DIP2A(27614),S100B(975)	./.	./.	5:166360906	21:46597629	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(2)	.	.	.
EBF2(344),RNA5SP258(91123)	FP236383.3	./.	+/.	8:26045757	21:8442049	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(3)	.	.	.
LRP1B	SORCS3	-/.	+/.	2:142129631	10:104794651	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000168702	ENSG00000156395	.	.	downstream	downstream	low_entropy(6)	.	.	.
OCIAD2(9622),RNU6-158P(16196)	TDO2	./.	+/.	4:48916559	4:155871604	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000151790	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104123.1	KRT19P4(10028),PBLD(11133)	+/.	./.	5:96361270	10:68271527	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000251314	.	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
AC023632.3(700),AC023632.4(3452)	AC022748.2	./.	+/.	8:94590959	15:78672957	intergenic	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000261303	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFAF4(8228),RN7SL509P(8580)	CEP55(32513),FFAR4(5060)	./.	./.	6:96906119	10:93561605	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KRT19P4(10028),PBLD(11133)	TCERG1L	./.	-/.	10:68271527	10:131174981	intergenic	intron	inversion	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000176769	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
EBNA1BP2	UAP1L1(153),MAN1B1-DT(254)	-/-	./+	1:43172530	9:137084692	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117395	.	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
SMAGP	SMAGP	-/.	-/.	12:51248435	12:51248448	intron	intron	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	ENSG00000170545	ENSG00000170545	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RPL37P21(102351),RPS3AP52(200226)	AC008798.3(8991),CCNE1(21784)	./.	./.	13:68433964	19:29790207	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KRT19P4(10028),PBLD(11133)	AP000770.1(4690),LINC02702(24638)	./.	./.	10:68271527	11:116614784	intergenic	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
TPCN1	FP236383.3	+/.	+/.	12:113295637	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000186815	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
FXNP1(22672),NRXN3(87423)	FXNP1(22771),NRXN3(87324)	./.	./.	14:78082950	14:78083049	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC027031.2(80998),OXR1(5576)	AL132857.1	./.	+/.	8:106353900	14:36651616	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000283098	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	AC004882.1(46),CABP7(98)	+/.	./.	21:8442046	22:29719905	intron	intergenic	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
RHEB	BANF2(94731),AL035045.1(56761)	-/.	./.	7:151518605	20:17830602	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106615	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ACAP3	KRT19P4(10028),PBLD(11133)	-/.	./.	1:1298510	10:68271527	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000131584	.	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
LINC01320	FP236383.3	+/.	+/.	2:33767489	21:8441654	intron	intron	translocation	0	0	0	72	546	low	.	.	.	.	.	ENSG00000228262	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
FAT1	MT-RNR2	-/.	+/.	4:186598220	MT:2216	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000083857	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC073349.2	PTPRD	-/.	-/.	7:64836200	9:8770683	exon	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000234338	ENSG00000153707	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL21P18(19872),RNA5SP362(8635)	RPL21P18(19966),RNA5SP362(8541)	./.	./.	12:66057586	12:66057680	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RHBDD1	PSMD11	+/.	+/.	2:226969293	17:32478240	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000144468	ENSG00000108671	.	.	upstream	downstream	mismatches(1)	.	.	.
AL603840.1	NKX2-2(8624),AL133325.2(7434)	+/.	./.	1:55378015	20:21522688	intron	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000234810	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AL603839.4(3076),ZFP69(155)	PTPRD	./.	-/.	1:40477135	9:10556376	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000153707	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL136456.1	FP236383.3	+/.	+/.	1:193927797	21:8394489	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000227240	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ACAP3	GLP2R	-/.	+/.	1:1298510	17:9862138	intron	intron	translocation/3'-3'	0	0	0	0	28	low	.	.	.	.	.	ENSG00000131584	ENSG00000065325	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
FXNP1(22669),NRXN3(87426)	FXNP1(22707),NRXN3(87388)	./.	./.	14:78082947	14:78082985	intergenic	intergenic	duplication/ITD	0	0	0	336	336	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SMAGP	DAZAP2	-/.	+/.	12:51248435	12:51248448	intron	intron	duplication/5'-5'	0	0	0	6	5	low	.	.	.	.	.	ENSG00000170545	ENSG00000183283	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PXYLP1	PXYLP1	+/.	+/.	3:141268163	3:141268207	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000155893	ENSG00000155893	.	.	upstream	downstream	low_entropy(1)	.	.	.
RNU6-114P(12215),PRKX(19164)	AC239367.1(22405),AC239367.2(29056)	./.	./.	X:3585176	X:51053762	intergenic	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BICC1	SLIT1	+/.	-/.	10:58688003	10:97179807	intron	intron	deletion/5'-5'	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000187122	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ACAP3	KRT19P4(10028),PBLD(11133)	-/.	./.	1:1298529	10:68271527	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000131584	.	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
PSMB2(61207),C1orf216(11144)	KRT19P4(10028),PBLD(11133)	./.	./.	1:35702733	10:68271527	intergenic	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	11:82143076	11:82143175	intron	intron	duplication/ITD	0	0	0	1119	1095	low	.	.	.	.	.	ENSG00000245832	ENSG00000245832	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01776	AC092066.1(2375),CBLC(10030)	+/.	./.	1:98227890	19:44767839	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000226053	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
CCDC30	COL25A1	+/.	-/.	1:42608359	4:108946347	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186409	ENSG00000188517	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139220.2	AL139220.2	+/.	+/.	1:44069471	1:44069484	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000230615	ENSG00000230615	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC005357.2	BPY2C	+/.	-/.	19:27961838	Y:25044576	intron	intron	translocation/3'-3'	0	0	0	4	9	low	.	.	.	.	.	ENSG00000267623	ENSG00000185894	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC116362.1	AC019117.1	-/.	-/.	5:125774671	7:17532333	intron	intron	translocation/3'-3'	0	0	0	1	5	low	.	.	.	.	.	ENSG00000248752	ENSG00000236039	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC2A6(8613),MYMK(26846)	AC008115.2	./.	+/.	9:133487740	12:12676727	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000257004	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02469	CCNB2	+/.	+/.	4:79684911	15:59122737	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248408	ENSG00000157456	.	.	downstream	downstream	mismatches(1)	.	.	.
DNTT	AC005357.2	+/.	+/.	10:96333567	19:27961840	intron	intron	translocation	0	0	0	21	4	low	.	.	.	.	.	ENSG00000107447	ENSG00000267623	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPS27AP16(328691),AC092125.2(253578)	FP236383.3	./.	+/.	16:61384655	21:8400580	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02782(112132),AL139823.1(98897)	LINC00682	./.	-/.	1:5203031	4:41881849	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000245870	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
MRPS36P5(24795),LINC02461(76134)	AC092275.1	./.	+/.	12:43079181	16:85260115	intergenic	intron	translocation	0	0	0	3	19	low	.	.	.	.	.	.	ENSG00000287787	.	.	downstream	upstream	mismatches(1)	.	.	.
PDE7A	5_8S_rRNA(2079),FP236383.3(121631)	-/.	./.	8:65841567	21:8259012	5'UTR	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000205268	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LINC02629(156849),PARD3(34907)	LINC01915	./.	+/.	10:34074653	18:24672729	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000265485	.	.	downstream	downstream	mismatches(1)	.	.	.
NUP210(39389),AC027124.2(583)	AL359313.1	./.	-/.	3:13459711	6:142615572	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000236366	.	.	downstream	upstream	mismatches(1)	.	.	.
HIVEP3	LL22NC03-63E9.3(6750),IGLV2-34(6662)	-/.	./.	1:41514505	22:22573352	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000127124	.	.	.	downstream	downstream	duplicates(2)	.	.	.
DNTT	AC006504.5	+/.	+/.	10:96333567	19:27961840	intron	intron	translocation	0	0	0	21	4	low	.	.	.	.	.	ENSG00000107447	ENSG00000267575	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	LINC01592	./.	-/.	6:168345669	8:68940496	intergenic	intron	translocation	0	0	0	0	30	low	.	.	.	.	.	.	ENSG00000253658	.	.	upstream	upstream	duplicates(5),mismatches(6)	.	.	.
SMYD2	FP236383.3	+/.	+/.	1:214296548	21:8397442	intron	intron	translocation/3'-3'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000143499	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC005357.2	BPY2B	+/.	+/.	19:27961838	Y:24625532	intron	intron	translocation/3'-3'	0	0	0	4	5	low	.	.	.	.	.	ENSG00000267623	ENSG00000183795	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRPM8	SEPTIN8	+/.	-/.	2:233927909	5:132788158	intron	intron	translocation	0	0	0	2	26	low	.	.	.	.	.	ENSG00000144481	ENSG00000164402	.	.	upstream	upstream	low_entropy	.	.	.
SLC9C1	MT-RNR1	-/.	+/.	3:112153433	MT:1503	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000172139	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP236383.3	./.	+/.	21:8255893	21:8415562	intergenic	intron	inversion	0	0	0	143	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ADGRD2	FP671120.4	+/.	+/.	9:124473541	21:8214795	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000180264	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP1R9B(275),AC015909.2(7381)	5_8S_rRNA(2088),FP236383.3(121622)	./.	./.	17:50150952	21:8259021	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	AP001823.1(3438),ELMOD1(750)	+/.	./.	10:104396370	11:107590341	intron	intergenic	translocation	0	0	0	558	1914	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
PDS5A	COL26A1	-/.	+/.	4:39875785	7:101499122	intron	intron	translocation	0	0	0	11	3	low	.	.	.	.	.	ENSG00000121892	ENSG00000160963	.	.	downstream	downstream	mismatches(1)	.	.	.
PTPRD	YBX2P2	-/.	-/.	9:10556376	15:93066409	intron	exon	translocation	0	0	0	12	6	low	.	.	.	.	.	ENSG00000153707	ENSG00000258611	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NCAN	FP671120.4	+/.	+/.	19:19212390	21:8214796	intron	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	ENSG00000130287	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
SCNN1G	PDYN-AS1	+/.	+/.	16:23199585	20:1959166	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000166828	ENSG00000233896	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DYNLL1	FP671120.4	+/.	+/.	12:120496222	21:8214796	5'UTR	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000088986	ENSG00000278996	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AL445207.1(92957),TXNL1P1(169809)	NRL	./.	-/.	13:86555691	14:24090270	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000129535	.	.	upstream	upstream	homopolymer(1)	.	.	.
NCAN	FP236383.3	+/.	+/.	19:19212390	21:8397830	intron	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	ENSG00000130287	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
LINC01377(94030),LINC01019(81747)	FP236383.3	./.	+/.	5:3275517	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01033	KRT18P55	+/.	-/.	5:54364220	17:28307146	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000249069	ENSG00000265480	.	.	upstream	downstream	mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	ZNF853(10188),ZNF316(2840)	./.	./.	4:25088518	7:6634478	intergenic	intergenic	translocation	0	0	0	68	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
FP671120.5(89927),FP671120.4(3987)	FP236383.3	./.	+/.	21:8193633	21:8397821	intergenic	intron	deletion/read-through	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(3)	.	.	.
LINC02041(107764),SST(111698)	TMCO5B(43809),AC055874.1(2138)	./.	./.	3:187557214	15:33291430	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025442.2(9210),SREK1(36824)	BBOF1	./.	+/.	5:66103147	14:74045018	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000119636	.	.	upstream	upstream	mismatches(1)	.	.	.
CDH8(89412),RNU6-21P(61093)	CDH8(89460),RNU6-21P(61045)	./.	./.	16:62126447	16:62126495	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
5_8S_rRNA(119745),FP236383.3(3965)	FP236383.3	./.	+/.	21:8376678	21:8442051	intergenic	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),read_through(3)	.	.	.
MAFG-DT	5_8S_rRNA(18971),CT867976.1(205814)	+/+	./+	17:81928147	22:11268930	exon	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	FIBIN(9775),BBOX1(33863)	./.	./.	6:168345669	11:27006862	intergenic	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),mismatches(6)	.	.	.
AC084337.2	FP236383.3	+/.	+/.	11:6496218	21:8395074	intron	intron	translocation/3'-3'	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC104777.1	EGLN3	-/.	-/.	2:150617538	14:33950555	intron	CDS	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000129521	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01720	LINC01720	+/.	+/.	1:190706674	1:190706732	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000231175	ENSG00000231175	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
PLS1	AC108037.1(159604),LINC02270(144153)	+/.	./.	3:142644949	4:12079292	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000120756	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.5(89927),FP671120.4(3987)	FP236383.3	./.	+/.	21:8193633	21:8442051	intergenic	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(3)	.	.	.
PDE7A	FP671120.4	-/.	+/.	8:65841567	21:8214783	5'UTR	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000205268	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC004158.1	LINC00189	+/+	+/-	16:72427774	21:29263475	exon	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000260664	ENSG00000215533	.	.	downstream	downstream	mismatches(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749069	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(3)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749075	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
CFAP20DC-AS1	ANK2	+/.	+/.	3:58909738	4:113275782	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242428	ENSG00000145362	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC45A1	LRP1B	+/.	-/.	1:8329977	2:141137947	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000162426	ENSG00000168702	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS3	AC012060.1(92676),LINC02248(36443)	+/.	./.	7:150995586	15:26358594	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000164867	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HBB	TEX29(173739),AL359649.1(70213)	-/.	./.	11:5225537	13:111517988	3'UTR	intergenic	translocation	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC016065.1	LINC02864	-/.	-/.	8:6406299	18:73168243	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000246089	ENSG00000263711	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749078	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC00620	HBB	+/.	-/.	3:13675389	11:5225537	intron	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000224514	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARHGEF40	SPRED1(9856),FAM98B(87022)	+/.	./.	14:21071327	15:38367105	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000165801	.	.	.	upstream	downstream	mismatches(1)	.	.	.
EPC1(15153),RNU6-1244P(607)	DDX11	./.	+/.	10:32393951	12:31095898	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000013573	.	.	upstream	upstream	mismatches(1)	.	.	.
KYNU	LINC00189	+/.	+/.	2:142964182	21:29263475	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000115919	ENSG00000215533	.	.	downstream	downstream	mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	12:105046145	12:105046196	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000151131	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
LINC02506(97408),LINC02353(25087)	PGS1	./.	+/.	4:32325951	17:78414483	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000087157	.	.	upstream	upstream	mismatches(1)	.	.	.
AC159540.1(2072),IGKV1OR2-9(15914)	FP671120.4	./.	+/.	2:97306223	21:8214787	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749087	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
PEBP4	AP001599.1	-/.	+/.	8:22928690	21:26914103	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000134020	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749057	intron	intron	translocation/5'-5'	0	0	0	0	283	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
ENPP6	ELOCP27(51486),AP005203.1(264110)	-/.	./.	4:184122405	18:4510944	intron	intergenic	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	.	.	.	upstream	upstream	mismatches(2)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749060	intron	intron	translocation/5'-5'	0	0	0	0	283	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC233263.7(1130550),AC233266.1(80229)	AC027612.2	./.	-/.	2:91498249	2:91686303	intergenic	intron	deletion/read-through	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000230572	.	.	downstream	upstream	homopolymer(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749063	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
RPS6KA6	MN1(31686),PITPNB(18227)	-/-	./+	X:84104622	22:27833442	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(63%)|	.	.	ENSG00000072133	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UPP2	UPP2	+/.	+/.	2:158058374	2:158058389	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000007001	ENSG00000007001	.	.	upstream	downstream	low_entropy(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749063	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC00871	AC006504.5	+/.	+/.	14:46105933	19:27961843	intron	intron	translocation/3'-3'	0	0	0	25	0	low	.	.	.	.	.	ENSG00000258700	ENSG00000267575	.	.	upstream	upstream	mismatches(4)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749066	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872802	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	mismatches(2)	.	.	.
AC022743.1(484045),AC083760.1(55590)	FP236383.3	./.	+/.	18:43983881	21:8444816	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ERBB4	ERBB4	-/.	-/.	2:212188185	2:212188200	intron	intron	duplication/ITD	0	0	0	9	0	low	.	.	.	.	.	ENSG00000178568	ENSG00000178568	.	.	upstream	downstream	duplicates(3),low_entropy(4)	.	.	.
AL390334.1(278),BNIP3P1(418826)	AL392023.2	./.	-/.	14:27845564	14:38104726	intergenic	intron	inversion	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000259048	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009093.11	FP236383.3	+/.	+/.	16:28724081	21:8441659	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000288630	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010247.2	TTLL1	+/.	-/.	19:42153000	22:43059438	intron	CDS	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000259436	ENSG00000100271	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00354(103507),AL138691.1(47307)	SIAH1P1	./.	+/.	13:112004771	X:35626738	intergenic	exon	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000230227	.	.	downstream	upstream	mismatches(1)	.	.	.
ANKRD30BL	FP671120.4	-/.	+/.	2:132255984	21:8214780	intron	intron	translocation/3'-3'	0	0	0	0	6035	low	.	.	.	.	.	ENSG00000163046	ENSG00000278996	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL159158.1(38911),SCEL(73916)	FP236383.3	./.	+/.	13:77461758	21:8400575	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL139042.1	FP236383.3	-/.	+/.	6:88378478	21:8442047	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000234426	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
PAX3	FP671120.7(400),5_8S_rRNA(867)	-/.	./.	2:222298765	21:8255914	5'UTR	intergenic	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135903	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	TSPAN18	./.	+/.	2:53114408	11:44859661	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000157570	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRRC28	IL1RAPL2	+/+	+/-	15:99251732	X:105726992	5'UTR	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000168904	ENSG00000189108	.	.	downstream	downstream	mismatches(1)	.	.	.
LYPD6(60748),MMADHC(34751)	OR4A6P(487048),TRIM48(49291)	./.	./.	2:149534886	11:55212864	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	FP236383.3	./.	+/.	3:95431525	21:8397434	intergenic	intron	translocation	0	0	0	45	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(21),mismatches(17)	.	.	.
AC010967.1(152956),AC069157.2(356039)	TSC1	./.	-/.	2:53114408	9:132917575	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165699	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	OCIAD2	./.	-/.	2:53114408	4:48906399	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000145247	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC092944.1	CSAG3	+/.	+/.	3:157252490	X:152758814	intron	intron	translocation/3'-3'	0	0	0	26	11	low	.	.	.	.	.	ENSG00000243176	ENSG00000268916	.	.	upstream	upstream	low_entropy	.	.	.
CFAP58	AC060809.1	+/.	+/.	10:104396370	15:81565290	intron	intron	translocation/3'-3'	0	0	0	558	14	low	.	.	.	.	.	ENSG00000120051	ENSG00000259543	.	.	upstream	upstream	low_entropy	.	.	.
RPL11P5(15458),AC125616.1(18824)	CCDC178	./.	-/.	12:120610006	18:32975571	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
SSBP3	FP236383.3	-/.	+/.	1:54369217	21:8397825	intron	intron	translocation	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000157216	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ANKRD30BL	FP236383.3	-/.	+/.	2:132255984	21:8397814	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000163046	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	AC007846.2	./.	+/.	1:7886187	17:6061425	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000285471	.	.	downstream	upstream	mismatches(1)	.	.	.
SLCO5A1	UBE2L3	-/.	+/.	8:69690371	22:21613410	intron	intron	translocation	0	0	0	53	2	low	.	.	.	.	.	ENSG00000137571	ENSG00000185651	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	C12orf56	./.	-/.	2:53114408	12:64297535	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000185306	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02055	SEC14L5	+/.	+/.	8:136983858	16:4988032	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000254101	ENSG00000103184	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	OSBP2	./.	+/.	2:53114408	22:30800504	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000184792	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP001823.1(3438),ELMOD1(750)	./.	./.	3:137274341	11:107590341	intergenic	intergenic	translocation	0	0	0	71	1914	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AC010967.1(152956),AC069157.2(356039)	GNL1	./.	-/.	2:53114408	6:30556384	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000204590	.	.	upstream	downstream	duplicates(3),mismatches(2)	.	.	.
DENND1A	FP671120.4	-/.	+/.	9:123387695	21:8209905	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119522	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(4)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214882	21:8447292	intron	intron	duplication	0	0	0	0	1	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	12:105046150	12:105046165	intron	intron	duplication/5'-5'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000151131	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
MSANTD3-TMEFF1	FP236383.3	+/.	+/.	9:100456466	21:8442059	intron	intron	translocation	0	0	0	2	5962	low	.	.	.	.	.	ENSG00000251349	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104042.1(183659),AC061997.1(820599)	AC079949.3	./.	+/.	11:36881526	12:127165978	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000286016	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8420132	21:8438935	intron	intron	inversion/3'-3'	0	0	0	0	159	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8217546	MT:2220	intron	exon	translocation/3'-3'	0	0	0	25	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8392869	21:8397823	intron	intron	inversion/3'-3'	0	0	0	43	1126	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
C1orf35	LHX2	-/-	+/+	1:228102036	9:124013899	exon	intron	translocation	0	0	0	10	0	low	.	.	Multiple_myeloma_tumor-associated(100%)|Homeodomain(100%),LIM_domain(100%)	.	.	ENSG00000143793	ENSG00000106689	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC00882	SLC12A8	-/.	-/.	3:107162204	3:125150511	intron	intron	inversion/3'-3'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000242759	ENSG00000221955	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM166C	ZNF302(39542),AC020910.5(7359)	+/.	./.	2:26563173	19:34725939	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173557	.	.	.	upstream	downstream	mismatches(1)	.	.	.
H3-3B	GCLM	-/-	-/+	17:75778989	1:93899671	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Core_histone_H2A/H2B/H3/H4(32%)|	.	.	ENSG00000132475	ENSG00000023909	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214895	21:8442047	intron	intron	deletion/read-through	0	0	0	63	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
PNLDC1(51820),AL035691.1(18464),MAS1(18464)	ATP7BP1(54052),RPS4XP18(113119)	./.	./.	6:159872524	18:22473346	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC008691.1	BEAN1	+/.	+/.	5:159645741	16:66427487	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000166546	.	.	upstream	upstream	mismatches(1)	.	.	.
NXF2(27555),AC235565.2(6118)	NXF2(27643),AC235565.2(6030)	./.	./.	X:102354277	X:102354365	intergenic	intergenic	duplication/ITD	0	0	0	0	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
MYO7B	AP000445.2(7167),TMA16P1(28017)	+/.	./.	2:127565894	11:58768220	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000169994	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC079949.3	FP671120.4	+/.	+/.	12:127165976	21:8214785	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000286016	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4490),AP001994.1(77191)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744113	14:78082967	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003555.2	AC105411.1	+/.	-/.	11:70014716	16:80507730	intron	exon	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000255191	ENSG00000259867	.	.	upstream	downstream	mismatches(1)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749072	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
HIVEP2	CHRM5	-/.	+/.	6:142946392	15:34050743	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000184984	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SAMD12	BEAN1	-/.	+/.	8:118554925	16:66427487	intron	intron	translocation/3'-3'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	ENSG00000166546	.	.	downstream	upstream	mismatches(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749075	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RGMB-AS1	SVIL-AS1	-/.	+/.	5:98771438	10:29447369	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	ENSG00000224597	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4488),AP001994.1(77193)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744111	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749078	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GAU1	GAU1	-/.	-/.	12:4702131	12:4702202	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255474	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749078	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GRIA2(140759),AC093817.2(61897)	NUDT12(105220),AC008505.1(212119)	./.	./.	4:157506834	5:103668010	intergenic	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP003390.1(4490),AP001994.1(77191)	./.	./.	3:137274346	11:119744113	intergenic	intergenic	translocation	0	0	0	71	3583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
CACNA1B	FP236383.3	+/.	+/.	9:137877970	21:8442052	CDS	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000148408	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
WNT5A	L3MBTL3	-/.	+/.	3:55474090	6:130019862	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000114251	ENSG00000198945	.	.	downstream	upstream	mismatches(1)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749081	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	LINC01592	./.	-/.	2:240393940	8:68940496	intergenic	intron	translocation	0	0	0	357	30	low	.	.	.	.	.	.	ENSG00000253658	.	.	upstream	upstream	duplicates(11),mismatches(13)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749084	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MIR196A2	HAVCR2	+/+	-/-	12:53991761	5:157086802	exon	3'UTR	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000207924	ENSG00000135077	.	.	downstream	downstream	mismatches(1)	.	.	.
ITIH5(434),ITIH2(35884)	MACROD1	./.	-/.	10:7667432	11:64038954	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000133315	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749084	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP001823.1(3438),ELMOD1(750)	GPC3	./.	-/.	11:107590341	X:133661640	intergenic	intron	translocation	0	0	0	1914	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
PTGDS	FP671120.4	+/+	+/+	9:136980150	21:8214790	exon	intron	translocation	0	0	0	4	5263	low	.	.	Lipocalin_/_cytosolic_fatty-acid_binding_protein_family(75%)|	.	.	ENSG00000107317	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
UTS2(32674),TNFRSF9(29685)	XGY1	./.	-/.	1:7886186	Y:12442861	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000227447	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479906	X:133661638	intron	intron	translocation/3'-3'	0	0	0	1761	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AL392086.1	FP671120.4	+/.	+/.	10:6788934	21:8214689	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000285845	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521057	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(8)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749060	intron	intron	translocation/5'-5'	0	0	0	0	283	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
JAK2	RPL24P9(223684),AC074035.1(449955)	+/.	./.	9:5093787	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000096968	.	.	.	upstream	downstream	mismatches(1)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749063	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DHFR	AL356131.1(332834),MTRNR2L9(183)	-/.	./.	5:80650543	6:61574145	intron	intergenic	translocation	0	0	0	8	65	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	mismatches(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749063	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749066	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DISC1	DISC1	+/.	+/.	1:231756512	1:231756564	intron	intron	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	ENSG00000162946	ENSG00000162946	.	.	upstream	downstream	duplicates(20),low_entropy(5)	.	.	.
GRIK4	AC106886.2	+/.	+/.	11:120708312	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000149403	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GALNTL6	FP671120.4	+/.	+/.	4:172643315	21:8215397	intron	intron	translocation	0	0	0	8	23	low	.	.	.	.	.	ENSG00000174473	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
DLG2	AL139383.1	-/.	-/.	11:85484189	13:33517098	intron	intron	translocation	0	0	0	279	2	low	.	.	.	.	.	ENSG00000150672	ENSG00000230490	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IDO2(17756),AC087518.1(70022)	GNL3L	./.	+/.	8:40034147	X:54578320	intergenic	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL392086.2	5_8S_rRNA(1979),FP236383.3(121731)	+/.	./.	10:6788934	21:8258912	intron	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000285988	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3(935),FP236383.11(6593)	+/.	./.	21:8394722	21:8455727	intron	intergenic	inversion	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
PDE4D	SLC36A4	-/.	-/.	5:60191252	11:93184706	intron	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000113448	ENSG00000180773	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DKK3(20752),LINC02547(354)	GNL3L	./.	+/.	11:12030521	X:54578320	intergenic	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CLIC4	AC099482.1	+/.	-/.	1:24839660	16:23199585	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169504	ENSG00000260741	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FLNB	LINC02864	+/.	-/.	3:58112680	18:73168243	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136068	ENSG00000263711	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.7(510),5_8S_rRNA(757)	FP236383.3	./.	+/.	21:8256024	21:8394739	intergenic	intron	deletion/read-through	0	0	0	2	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM119(10438),SELPLG(13137)	FP671120.4	./.	+/.	12:108608758	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
QRSL1(26122),LINC02526(996)	CXorf38(495),MED14(249)	./.	./.	6:106694539	X:40648056	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02530(23826),PHACTR1(107324)	BICC1	./.	+/.	6:12609230	10:58688003	intergenic	intron	translocation	0	0	0	2	87	low	.	.	.	.	.	.	ENSG00000122870	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC36A4	SMG1	-/.	-/.	11:93184702	16:18892390	intron	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000180773	ENSG00000157106	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ERBIN	GNL3L	+/.	+/.	5:66042364	X:54578320	intron	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	ENSG00000112851	ENSG00000130119	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262600	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
AC010735.2	AASDH	+/+	-/+	2:226800184	4:56373512	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272622	ENSG00000157426	.	.	downstream	upstream	mismatches(1)	.	.	.
TRPC3(2339),AC097533.1(123441)	GNL3L	./.	+/.	4:121954399	X:54578320	intergenic	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PRIM2	SLC36A4	+/.	-/.	6:57404517	11:93184706	intron	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000146143	ENSG00000180773	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PCP4L1	LINC01643	+/.	+/.	1:161268557	22:34179910	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000248485	ENSG00000236052	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AC244258.1	SLC36A4	+/.	-/.	6:60306040	11:93184706	intron	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000283453	ENSG00000180773	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
EXOC4	EXOC4	+/.	+/.	7:133971362	7:133971375	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000131558	ENSG00000131558	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC099482.1	PDYN-AS1	-/.	+/.	16:23199585	20:1959166	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000260741	ENSG00000233896	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GPC6-AS2	GPC6-AS2	-/.	-/.	13:93833099	13:93833158	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000224394	ENSG00000224394	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
PAXBP1(81),C21orf62-AS1(227)	PAXBP1(90),C21orf62-AS1(218)	./.	./.	21:32771873	21:32771882	intergenic	intergenic	duplication/ITD	0	0	0	494	445	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117449	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC093523.1	PDYN-AS1	-/.	+/.	5:68879607	20:1959166	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000249335	ENSG00000233896	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC12A2	ASCC3	+/.	-/.	5:128132315	6:100809843	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000064651	ENSG00000112249	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	4:94902251	4:94902264	intron	intron	duplication/ITD	0	0	0	345	345	low	.	.	.	.	.	ENSG00000138696	ENSG00000138696	.	.	upstream	downstream	duplicates(4),low_entropy(4),merge_adjacent	.	.	.
Y_RNA(3569),LCN1P2(11662)	CDH8	./.	-/.	9:133306132	16:61831043	intergenic	intron	translocation	0	0	0	0	57	low	.	.	.	.	.	.	ENSG00000150394	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
AC093765.2	FP236383.3	+/.	+/.	4:116876481	21:8397825	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000286637	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FARS2	TEX29(173737),AL359649.1(70215)	+/.	./.	6:5782068	13:111517986	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000145982	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FNDC3B	THRAP3P2(6690),SLCO3A1(103063)	+/.	./.	3:172359006	15:91750645	intron	intergenic	translocation	0	0	0	128	21	low	.	.	.	.	.	ENSG00000075420	.	.	.	downstream	upstream	mismatches	.	.	.
CDK14	FP671120.4	+/+	+/+	7:91209432	21:8214788	3'UTR	intron	translocation	0	0	0	5	5263	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000058091	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.6	AC079193.1(4368),ZDHHC2(1226)	-/-	./-	21:8210561	8:17155256	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	downstream	duplicates(2),mismatches(4)	.	.	.
FP236383.4	AC079193.1(4368),ZDHHC2(1226)	-/-	./-	21:8393596	8:17155256	exon	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000280614	.	.	.	upstream	downstream	duplicates(2),mismatches(4)	.	.	.
CFAP58	AP003390.1(4483),AP001994.1(77198)	+/.	./.	10:104396370	11:119744106	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
AC010746.2(61294),NPM1P46(5667)	AC010746.2(61391),NPM1P46(5570)	./.	./.	2:197374034	2:197374131	intergenic	intergenic	duplication/ITD	0	0	0	5	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL161613.1(257),SNORD27(13233)	ARLNC1	./.	-/.	13:21126653	16:80887218	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000260896	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC007391.3	TPTE2P1(13485),RPL34P27(6605)	+/.	./.	2:37473961	13:24981972	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000287316	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC023302.2(5386),CEMIP(822)	LINC02864	./.	-/.	15:80778521	18:73168243	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZFYVE28	FP671120.3(465),FP671120.7(3978)	-/.	./.	4:2334332	21:8250614	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159733	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00692(18212),RPEP2(123709)	FRMD4A	./.	-/.	3:25891960	10:14238465	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000151474	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HIPK3(18996),KIAA1549L(89)	FP236383.3	./.	+/.	11:33376019	21:8435133	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.5	AC079193.1(4368),ZDHHC2(1226)	-/-	./-	21:8437806	8:17155256	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281181	.	.	.	upstream	downstream	duplicates(2),mismatches(4)	.	.	.
AC067942.2(17103),LINC00575(12487)	5_8S_rRNA(2081),FP236383.3(121629)	./.	./.	4:82598487	21:8259014	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CLIP3	C7orf57	-/-	+/-	19:36026157	7:48045710	CDS	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	ENSG00000164746	.	.	upstream	downstream	mismatches(1)	.	.	.
AC026202.2	FP671120.4	-/.	+/.	3:5167935	21:8210273	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000233912	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDH8	UHRF1	-/.	+/.	16:61831043	19:4910339	intron	intron	translocation/3'-3'	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	ENSG00000276043	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02235	AP003390.1(4499),AP001994.1(77182)	+/.	./.	8:81842439	11:119744122	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
CDH8	CT867976.1(150832),AC138776.1(197048)	-/.	./.	16:61831043	22:11630475	intron	intergenic	translocation	0	0	0	57	8	low	.	.	.	.	.	ENSG00000150394	.	.	.	downstream	upstream	duplicates(2),mismatches(4)	.	.	.
FP671120.6	CDH8	-/-	-/-	21:8210561	16:61831043	exon	intron	translocation	0	0	0	2	57	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000280800	ENSG00000150394	.	.	upstream	downstream	duplicates(2),mismatches(4)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236366	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.4	CDH8	-/-	-/-	21:8393596	16:61831043	exon	intron	translocation	0	0	0	16	57	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000280614	ENSG00000150394	.	.	upstream	downstream	duplicates(2),mismatches(4)	.	.	.
AC138474.1	FGFR1(15353),C8orf86(26647)	-/-	./+	19:13014314	8:38484187	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000267417	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.7	CDH8	-/-	-/-	21:8254769	16:61831043	exon	intron	translocation	0	0	0	2	57	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000281383	ENSG00000150394	.	.	upstream	downstream	duplicates(2),mismatches(4)	.	.	.
ADAMTS8(19561),ADAMTS15(804)	FP236383.3	./.	+/.	11:130448170	21:8438949	intergenic	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
FXN	HVCN1	+/.	-/.	9:69068525	12:110686646	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000165060	ENSG00000122986	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AHR	MYO18A(49),AC005412.1(16624)	+/.	./.	7:17102798	17:29180447	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000106546	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	MIR3169(142297),PCDH20(67508)	./.	./.	8:17155256	13:61342177	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
CARD16	CARD16	-/.	-/.	11:105077822	11:105077835	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000204397	ENSG00000204397	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC092651.2	AC092651.2	+/.	+/.	2:87105967	2:87106027	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000287931	ENSG00000287931	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CARD16	CARD16	-/.	-/.	11:105077831	11:105077840	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000204397	ENSG00000204397	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC009511.3(8795),AC008011.1(102346)	AC004585.2(3916),SMARCE1(22461)	./.	./.	12:27833177	17:40602501	intergenic	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNA5SP173(55855),AC017087.1(223201)	FP236383.3	./.	+/.	4:178462685	21:8442063	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
DNAH14	AP003390.1(4490),AP001994.1(77191)	+/.	./.	1:225078904	11:119744113	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
ANXA10	DTNA	+/.	+/.	4:168122499	18:34571660	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109511	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626678	X:18626687	intron	intron	duplication/ITD	0	0	0	101	101	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
FP671120.4(5324),FP671120.10(2384)	FP236383.3	./.	+/.	21:8232970	21:8394722	intergenic	intron	inversion	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CYP51A1P1(505971),AC023503.1(70453)	FP671120.3(594),FP671120.7(3849)	./.	./.	3:83313992	21:8250743	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4496),AP001994.1(77185)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744119	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
NXF2(27555),AC235565.2(6118)	NXF2(27648),AC235565.2(6025)	./.	./.	X:102354277	X:102354370	intergenic	intergenic	duplication/ITD	0	0	0	0	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
OXNAD1	SEMA6D	+/.	+/.	3:16298767	15:47276193	intron	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000137872	.	.	downstream	upstream	mismatches(2)	.	.	.
NXF2(6013),AC235565.2(27660)	NXF2(6024),AC235565.2(27649)	./.	./.	X:102332735	X:102332746	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
CLDN24	LINC01287(16430),PAXBP1P1(19014)	-/.	./.	4:183321862	7:153430415	CDS	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000185758	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNMBP-AS1	POLRMT	+/.	-/.	10:99948205	19:632544	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000227695	ENSG00000099821	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AL139383.1	FP671120.4	-/.	+/.	13:33517096	21:8214395	intron	intron	translocation/3'-3'	0	0	0	2	540	low	.	.	.	.	.	ENSG00000230490	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257415	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
GFY	ZNF600	+/+	-/-	19:49428129	19:52786289	intron	intron	inversion	0	0	0	0	4	low	.	.	|KRAB_box(100%),Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000261949	ENSG00000189190	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
RAP1A	ALDH3B2	+/.	-/.	1:111619772	11:67675153	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000116473	ENSG00000132746	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
CCSER1	DNTT	+/.	+/.	4:91220634	10:96333551	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184305	ENSG00000107447	.	.	downstream	upstream	mismatches(1)	.	.	.
SMARCA2	AC110588.1(77739),FAM149B1P1(127731)	+/.	./.	9:2111004	15:96629256	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000080503	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824765	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC005040.2(134973),LINC01789(123184)	AC079804.2(2199),ALG1L5P(20982)	./.	./.	2:107131507	7:6902822	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	3:120125706	3:120125755	intron	intron	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	ENSG00000242622	ENSG00000242622	.	.	upstream	downstream	duplicates(73),low_entropy(16)	.	.	.
AC079760.2	FP671120.4	+/.	+/.	7:91494892	21:8206534	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243144	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
BAZ1B(439),BCL7B(13624)	AC109630.1	./.	+/.	7:73522732	15:39489500	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259269	.	.	upstream	downstream	mismatches(1)	.	.	.
AC145285.4	5_8S_rRNA(1691),FP236383.3(122019)	-/.	./.	16:28724081	21:8258624	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000261419	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FECHP1(162381),KRT8P18(179470)	FECHP1(162420),KRT8P18(179431)	./.	./.	3:35036235	3:35036274	intergenic	intergenic	duplication/ITD	0	0	0	72	72	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(60),low_entropy(10)	.	.	.
EDIL3-DT(174244),PPIAP79(334803)	IQCH-AS1	./.	-/.	5:84665009	15:67310422	intergenic	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	.	ENSG00000259673	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AP001823.1(3430),ELMOD1(758)	AP001823.1(3529),ELMOD1(659)	./.	./.	11:107590333	11:107590432	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
IQCH	U91319.1(53504),U95743.1(111762)	+/.	./.	15:67310424	16:13616892	intron	intergenic	translocation	0	0	0	40	2	low	.	.	.	.	.	ENSG00000103599	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479909	intron	intron	translocation	0	0	0	144	1761	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
TSPAN11	IQCH-AS1	+/.	-/.	12:30968231	15:67310424	intron	intron	translocation/5'-5'	0	0	0	8	40	low	.	.	.	.	.	ENSG00000110900	ENSG00000259673	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
KYNU	BACH1	+/.	+/.	2:142964182	21:29263475	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000115919	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
CT867976.1(150833),AC138776.1(197047)	UBE2V1P9(93940),RNU6-555P(213392)	./.	./.	22:11630476	X:90383843	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ISCA1P2(11040),LINC02814(33483)	FP236383.3	./.	+/.	1:229053631	21:8444040	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	12:105046145	12:105046196	intron	intron	duplication/3'-3'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000136010	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC010970.1	FP236383.3	-/-	+/+	Y:10197463	21:8442049	exon	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000225840	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626662	X:18626677	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PPP2CB	BACH1	-/.	+/.	8:30802688	21:29263475	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000104695	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
PHF6(23326),HPRT1(8048)	PHF6(23337),HPRT1(8037)	./.	./.	X:134452117	X:134452128	intergenic	intergenic	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
UBE4B	RN7SKP189(61768),CYCSP44(57377)	+/.	./.	1:10159221	X:145119205	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130939	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IL1RAPL2	IL1RAPL2	+/.	+/.	X:104786914	X:104786983	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000189108	ENSG00000189108	.	.	upstream	downstream	low_entropy(1)	.	.	.
TSPAN11	IQCH	+/.	+/.	12:30968231	15:67310424	intron	intron	translocation	0	0	0	8	40	low	.	.	.	.	.	ENSG00000110900	ENSG00000103599	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
NALCN-AS1	IQCH-AS1	+/.	-/.	13:100887372	15:67310425	intron	intron	translocation/5'-5'	0	0	0	2	40	low	.	.	.	.	.	ENSG00000233009	ENSG00000259673	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
THUMPD3	ERC2	+/+	-/-	3:9386381	3:55815739	3'UTR	intron	inversion	0	0	0	1	0	low	.	.	Putative_RNA_methylase_family_UPF0020(100%),THUMP_domain(100%)|RIM-binding_protein_of_the_cytomatrix_active_zone(7%)	.	.	ENSG00000134077	ENSG00000187672	.	.	downstream	downstream	homopolymer(1)	.	.	.
ERC2	MIER3	-/.	-/.	3:55815739	5:56925882	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187672	ENSG00000155545	.	.	downstream	upstream	homopolymer(1)	.	.	.
MRPS36P5(24794),LINC02461(76135)	FP671120.4	./.	+/.	12:43079180	21:8214797	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01031	GRIK4	+/.	+/.	1:193358242	11:120512061	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000232077	ENSG00000149403	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	FP236383.3(935),FP236383.11(6593)	+/.	./.	21:8438935	21:8455727	intron	intergenic	inversion	0	0	0	159	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ERC2	HSP90AA4P(179371),LINC01262(5042)	-/.	./.	3:55815739	4:189654563	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000187672	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC079943.2	FP671120.3(3966),FP671120.7(477)	-/.	./.	3:158007165	21:8254115	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000242536	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
U3(104494),GPC1(41726)	RAD9A	./.	+/.	2:240393937	11:67335764	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000172613	.	.	upstream	upstream	mismatches(1)	.	.	.
ERC2	TRIM50	-/.	-/.	3:55815739	7:73325894	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000187672	ENSG00000146755	.	.	downstream	upstream	homopolymer(1)	.	.	.
ITPKB	AC100803.4	-/.	+/.	1:226675840	8:141434802	intron	exon	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000143772	ENSG00000271959	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
BAIAP2L1(190),PPIAP82(52839)	FP236383.3	./.	+/.	7:98401280	21:8397828	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
TMIGD3	MON1B	-/.	+/.	1:111491208	16:77194699	intron	CDS	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000121933	ENSG00000103111	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PHKG2	AC007785.1	+/.	+/.	16:30749091	19:46177264	intron	intron	translocation/5'-5'	0	0	0	221	0	low	.	.	.	.	.	ENSG00000156873	ENSG00000267922	.	.	downstream	downstream	mismatches(1)	.	.	.
NAP1L4	AC084337.2	-/.	+/.	11:2961250	11:6496218	intron	intron	deletion/3'-3'	0	0	0	0	101	low	.	.	.	.	.	ENSG00000205531	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
RPL36	UAP1L1(153),MAN1B1-DT(254)	+/+	./+	19:5681242	9:137084692	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000130255	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LIMD1	ANKRD20A11P(1265),NF1P3(19225)	+/.	./.	3:45593628	21:13981702	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CT75(36424),Y_RNA(15572)	LINC01982	./.	+/.	2:222389413	17:52444684	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263317	.	.	downstream	upstream	mismatches(1)	.	.	.
AC078923.1	SPIN3	-/.	-/.	12:75606520	X:56931247	intron	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000258077	ENSG00000204271	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC008837.2(60704),CRLF3P2(292294)	TRIP11	./.	-/.	5:99656001	14:91982490	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100815	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479891	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AC013437.1	ATG5	-/.	-/.	2:143162905	6:106192794	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000257284	ENSG00000057663	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
KIRREL1	IFT46	+/+	-/-	1:158095881	11:118566325	3'UTR	intron	translocation	0	0	0	0	9	low	.	.	CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)|Intraflagellar_transport_complex_B_protein_46_C_terminal(100%)	.	.	ENSG00000183853	ENSG00000118096	.	.	downstream	downstream	mismatches(1)	.	.	.
BAG6	FP236383.3	-/.	+/.	6:31647292	21:8399899	intron	intron	translocation	0	0	0	5	19	low	.	.	.	.	.	ENSG00000204463	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
EFCAB2(2716),RNU1-132P(4047)	5_8S_rRNA(2802),FP236383.3(120908)	./.	./.	1:245129880	21:8259735	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ASTN2	SYN3	-/.	-/.	9:116737205	22:32882075	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000148219	ENSG00000185666	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1	AC005229.5	-/.	-/.	4:186598218	7:148605538	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000083857	ENSG00000287636	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214789	21:8437078	intron	intron	inversion/3'-3'	0	0	0	5263	55	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AC116362.1	AL591468.1(1337),LINC02528(38166)	-/.	./.	5:125774671	6:137904913	intron	intergenic	translocation	0	0	0	1	6	low	.	.	.	.	.	ENSG00000248752	.	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
AL603839.4(3076),ZFP69(155)	MIR3148(37078),MAP2K1P1(33287)	./.	./.	1:40477135	8:29994426	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FMN2	TBXT	+/.	-/.	1:240200873	6:166166388	intron	intron	translocation/5'-5'	0	0	0	49	0	low	.	.	.	.	.	ENSG00000155816	ENSG00000164458	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
PAUPAR	INTS4	+/.	-/.	11:31981345	11:77886439	intron	intron	deletion/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000281880	ENSG00000149262	.	.	downstream	upstream	mismatches(1)	.	.	.
PRR12	PRR12	+/.	+/.	19:49622929	19:49622942	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000126464	ENSG00000126464	.	.	upstream	downstream	low_entropy(1)	.	.	.
AAMDC	AL159158.1(38911),SCEL(73916)	+/.	./.	11:77886437	13:77461758	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000087884	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IGSF21	KSR2(13729),RFC5(30869)	+/.	./.	1:18369039	12:117982719	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000117154	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC026412.1	AP001599.1	-/.	+/.	5:1602550	21:26914103	exon	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000188002	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
AC103764.1(47896),RPL23AP56(49032)	GPR19	./.	-/.	8:134929795	12:12676727	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000183150	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNH8	LINC02235	+/.	+/.	3:19308688	8:81842469	intron	intron	translocation/3'-3'	0	0	0	119	76	low	.	.	.	.	.	ENSG00000183960	ENSG00000254689	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AP003390.1(4394),AP001994.1(77287)	AP003390.1(4504),AP001994.1(77177)	./.	./.	11:119744017	11:119744127	intergenic	intergenic	duplication	0	0	0	3458	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
INTS4	RN7SL547P(135273),AL031679.1(62674)	-/.	./.	11:77886437	20:7769124	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000149262	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC124290.1	TMC4(94),MBOAT7(68)	+/.	./.	8:35870181	19:54173344	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000253452	.	.	.	downstream	downstream	mismatches(1)	.	.	.
USP31	FP236383.3	-/.	+/.	16:23069257	21:8441948	CDS	intron	translocation/3'-3'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000103404	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CLIC4	AC093523.1	+/.	-/.	1:24839660	5:68879607	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169504	ENSG00000249335	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL161910.1	AC012060.1(92676),LINC02248(36443)	-/-	./-	9:89603046	15:26358594	exon	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000285907	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL159158.1(38911),SCEL(73916)	FP236383.3	./.	+/.	13:77461758	21:8444807	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC087863.2	AC087863.2	-/.	-/.	12:118855023	12:118855038	intron	intron	duplication/ITD	0	0	0	7	2	low	.	.	.	.	.	ENSG00000256149	ENSG00000256149	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
ATF6	5_8S_rRNA(2693),FP236383.3(121017)	+/.	./.	1:161819246	21:8259626	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000118217	.	.	.	upstream	upstream	mismatches(2)	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP236383.3(5332),FP236383.11(2196)	./.	./.	21:8255893	21:8460124	intergenic	intergenic	inversion	0	0	0	143	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	TUSC2P2(120150),DLGAP5P2(150249)	+/.	./.	21:8217544	X:92892241	intron	intergenic	translocation	0	0	0	25	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PHKB	AC233702.2(14060),AC233702.1(6247)	+/.	./.	16:47491353	17:21608240	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000102893	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP001823.1(3436),ELMOD1(752)	./.	./.	3:137274341	11:107590339	intergenic	intergenic	translocation	0	0	0	71	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	3:64736221	3:64736230	intron	intron	duplication/ITD	0	0	0	57	56	low	.	.	.	.	.	ENSG00000241684	ENSG00000241684	.	.	upstream	downstream	low_entropy(1)	.	.	.
HIVEP2	GPM6B	-/.	-/.	6:142946393	X:13837292	intron	intron	translocation/3'-3'	0	0	0	63	2	low	.	.	.	.	.	ENSG00000010818	ENSG00000046653	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ERVK13-1	AC015813.5(36051),AC015813.8(6551)	-/.	./.	16:2663080	17:58044238	exon	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000260565	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC15A5	MGST1	-/-	+/-	12:16193845	12:16363727	intron	exon	deletion/read-through/3'-3'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000188991	ENSG00000008394	.	.	downstream	upstream	low_entropy(1)	.	.	.
UNC79	AL731768.1(189207),SRIP2(195875)	+/.	./.	14:93491666	X:89171560	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000133958	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAUPAR	FP671120.4	+/.	+/.	11:31981345	21:8217539	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000281880	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SCAF1	FP236383.3	+/.	+/.	19:49657357	21:8390946	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000126461	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ROBO1	PRKCQ	-/.	-/.	3:79759832	10:6580280	intron	5'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000169855	ENSG00000065675	.	.	upstream	downstream	mismatches(1)	.	.	.
AL159158.1(38911),SCEL(73916)	FP671120.4	./.	+/.	13:77461758	21:8217537	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AL139220.2	AL139220.2	+/.	+/.	1:44069472	1:44069483	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000230615	ENSG00000230615	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AAMDC	RPS27AP16(328691),AC092125.2(253578)	+/.	./.	11:77886442	16:61384655	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000087884	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TPK1	SUPT5H	-/.	+/.	7:144580541	19:39458232	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000196511	ENSG00000196235	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NDUFB9P3(84563),LINC01608(5539)	SPPL2B	./.	+/.	8:110894457	19:2338920	intergenic	intron	translocation	0	0	0	30	15	low	.	.	.	.	.	.	ENSG00000005206	.	.	upstream	downstream	mismatches(1)	.	.	.
OR6C70	AC233702.2(14060),AC233702.1(6247)	-/.	./.	12:55469551	17:21608240	CDS	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000184954	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC110772.2(115792),AC108046.1(21496)	Z85996.2	./.	+/.	4:187176722	6:36769693	intergenic	exon	translocation	0	1	0	0	0	low	.	.	.	.	.	.	ENSG00000285888	.	.	upstream	upstream	min_support	.	.	.
RNU6-412P(125671),RAC1P2(66817)	AC008035.1	./.	+/.	4:46657013	12:46639336	intergenic	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000272369	.	.	downstream	upstream	mismatches(1)	.	.	.
MED27	DOT1L	-/.	+/.	9:131863536	19:2229579	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000160563	ENSG00000104885	.	.	downstream	downstream	mismatches(1)	.	.	.
GPR39	STRN3	+/.	-/.	2:132557875	14:30970333	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000196792	.	.	downstream	downstream	mismatches(1)	.	.	.
TRIO	LL22NC03-63E9.3(6751),IGLV2-34(6661)	+/.	./.	5:14491224	22:22573353	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000038382	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC004946.1(17650),KCND2(28312)	SPECC1L-ADORA2A	./.	+/.	7:120244863	22:24345871	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000258555	.	.	downstream	upstream	mismatches(1)	.	.	.
AC087311.1(131560),SYT10(248924)	AC142086.5	./.	-/.	12:33125314	16:32974448	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000261259	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01287(16430),PAXBP1P1(19014)	AL160271.1(11008),AL160271.2(22226)	./.	./.	7:153430415	9:131793966	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP3	LL22NC03-63E9.3(6751),IGLV2-34(6661)	-/.	./.	1:41514504	22:22573353	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000127124	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TMC1	5_8S_rRNA(2090),FP236383.3(121620)	+/.	./.	9:72523161	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000165091	.	.	.	upstream	upstream	duplicates(1),mismatches(4)	.	.	.
AC114763.1	FP236383.3	-/.	+/.	2:138480624	21:8442047	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000228043	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
NOC2LP2(16145),RHOQP2(267)	AC024588.1	./.	+/.	2:131460732	5:16637120	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000246214	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL606845.1(165057),LINC02534(109731)	LINC02629(156849),PARD3(34907)	./.	./.	6:115523809	10:34074653	intergenic	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L8	TMEM120B	-/.	+/.	11:10508412	12:121782557	5'UTR	exon	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000255823	ENSG00000188735	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683462	15:81683471	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AC026371.1(57707),IPO8(78979)	LINC01643	./.	+/.	12:30550009	22:34179910	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000236052	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AP000721.1	FP236383.3	+/.	+/.	11:63978519	21:8397816	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000256100	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LARP4	LARP4	+/.	+/.	12:50446332	12:50446345	intron	intron	duplication/ITD	0	0	0	52	39	low	.	.	.	.	.	ENSG00000161813	ENSG00000161813	.	.	upstream	downstream	low_entropy(2)	.	.	.
UBE2W	FP565260.4(2303),FP565260.3(3045)	-/.	./.	8:73820101	21:5019448	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TMCO1	SORCS3	-/.	+/.	1:165725025	10:104794659	3'UTR	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000143183	ENSG00000156395	.	.	downstream	downstream	low_entropy(6)	.	.	.
PCAT1	PCAT1	+/.	+/.	8:126750632	8:126750647	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000253438	ENSG00000253438	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
AL136366.1	FP236383.3	+/.	+/.	9:14346299	21:8397915	intron	intron	translocation	0	0	0	0	79	low	.	.	.	.	.	ENSG00000225472	ENSG00000280441	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
5_8S_rRNA(2084),FP236383.3(121626)	5_8S_rRNA(2111),FP236383.3(121599)	./.	./.	21:8259017	21:8259044	intergenic	intergenic	duplication/ITD	0	0	0	5911	5911	low	.	.	.	.	.	.	.	.	.	upstream	downstream	hairpin(1)	.	.	.
TMEM184A	HBB	-/.	-/.	7:1547184	11:5225537	intron	3'UTR	translocation/3'-3'	0	0	0	3	91	low	.	.	.	.	.	ENSG00000164855	ENSG00000244734	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	AP003390.1(4489),AP001994.1(77192)	+/.	./.	10:104396370	11:119744112	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
AC092944.1	NLRP1(36435),AC135726.1(44367)	+/.	./.	3:157252490	17:5655859	intron	intergenic	translocation	0	0	0	26	6	low	.	.	.	.	.	ENSG00000243176	.	.	.	upstream	downstream	low_entropy	.	.	.
AC010746.2(61294),NPM1P46(5667)	AC010746.2(61389),NPM1P46(5572)	./.	./.	2:197374034	2:197374129	intergenic	intergenic	duplication/ITD	0	0	0	5	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(5)	.	.	.
HBB	LRRC4B	-/.	-/.	11:5225537	19:50548287	3'UTR	intron	translocation/3'-3'	0	0	0	91	14	low	.	.	.	.	.	ENSG00000244734	ENSG00000131409	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM89A(803),AL109810.1(76774)	TLE4	./.	+/.	1:231041057	9:79572886	intergenic	intron	translocation	0	0	0	6	12	low	.	.	.	.	.	.	ENSG00000106829	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL035078.4	FP671120.4	+/.	+/.	11:31981345	21:8217539	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000285283	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS24P8(33048),TMEM158(31243)	PPEF1	./.	+/.	3:45193223	X:18799773	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000086717	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	3:95431525	21:8258619	intergenic	intergenic	translocation	0	0	0	45	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(21),mismatches(17)	.	.	.
HBB	5_8S_rRNA(2093),FP236383.3(121617)	-/.	./.	11:5225537	21:8259026	3'UTR	intergenic	translocation	0	0	0	91	6	low	.	.	.	.	.	ENSG00000244734	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
HBB	AC139099.2	-/.	+/.	11:5225537	17:83179476	3'UTR	intron	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000262898	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PHF1	HBB	+/.	-/.	6:33412270	11:5225537	CDS	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000112511	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MBOAT2	AC096773.1	-/.	-/.	2:8859782	4:127047968	intron	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000143797	ENSG00000250945	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02041(107764),SST(111698)	BACH2	./.	-/.	3:187557214	6:89979172	intergenic	intron	translocation	0	0	0	14	1	low	.	.	.	.	.	.	ENSG00000112182	.	.	upstream	downstream	mismatches(2)	.	.	.
KIAA2012-AS1	NUDCD3	-/.	-/.	2:202083777	7:44381493	intron	3'UTR	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000222035	ENSG00000015676	.	.	downstream	downstream	mismatches(1)	.	.	.
LIMD1	AL358232.1(41740),PCAT7(435)	+/.	./.	3:45593628	9:94554619	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
WDR88	ATP1A1	+/+	+/+	19:33132155	1:116373738	5'UTR	intron	translocation	0	0	0	1	0	low	.	.	|Cation_transport_ATPase_(P-type)(100%),Cation_transporter/ATPase__N-terminus(100%),Cation_transporting_ATPase__C-terminus(100%),E1-E2_ATPase(100%),haloacid_dehalogenase-like_hydrolase(100%)	.	.	ENSG00000166359	ENSG00000163399	.	.	downstream	upstream	mismatches(1)	.	.	.
HBB	VWA8	-/.	-/.	11:5225537	13:41961031	3'UTR	5'UTR	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000102763	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LTF	SFRP4(58886),STARD3NL(93664)	-/.	./.	3:46483304	7:38084581	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000012223	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ROBO1	LINC01287	-/.	-/.	3:78928988	7:153410186	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000169855	ENSG00000234722	.	.	downstream	downstream	mismatches(1)	.	.	.
TADA2B	HBB	+/.	-/.	4:7053443	11:5225537	5'UTR	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000173011	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479903	intergenic	intron	translocation	0	0	0	14	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
LINC01144	HBB	+/+	-/-	1:45304503	11:5225537	exon	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	ENSG00000281912	ENSG00000244734	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CRADD	GABPA	+/.	+/.	12:93846255	21:25738894	intron	intron	translocation/5'-5'	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	ENSG00000154727	.	.	downstream	downstream	mismatches(2)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479889	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
NUP214	MICAL3	+/.	-/.	9:131197615	22:17796200	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000126883	ENSG00000243156	.	.	upstream	upstream	mismatches(1)	.	.	.
HBB	MED25	-/.	+/.	11:5225537	19:49829853	3'UTR	CDS	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000104973	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC006058.1(5932),TOPAZ1(113589)	FP236383.3	./.	+/.	3:44128297	21:8398131	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
EMCN	AC097459.1	-/.	+/.	4:100459179	4:100459188	intron	intron	duplication/5'-5'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000164035	ENSG00000286150	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC135782.1(19638),ACSF3(15771)	LSM14B	./.	+/.	16:89072604	20:62131771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	mismatches(1)	.	.	.
HS6ST1	HBB	-/.	-/.	2:128292127	11:5225537	intron	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000136720	ENSG00000244734	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMEFF2	TMEFF2	-/.	-/.	2:192193731	2:192193808	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000144339	ENSG00000144339	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
FIG4	GREB1	+/+	+/+	6:109738836	2:11534909	exon	intron	translocation	0	0	0	0	0	low	.	.	SacI_homology_domain(54%)|GREB1_N-terminal_region(100%)	.	.	ENSG00000112367	ENSG00000196208	.	.	downstream	upstream	mismatches(1)	.	.	.
TRAF7	AL731768.1(245335),SRIP2(139747)	+/.	./.	16:2177848	X:89227688	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131653	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
TEX2	AP001858.1(1345),TUBAP7(12337)	-/-	./+	17:64213792	11:63034448	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136478	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HBB	ANO4	-/.	+/.	11:5225537	12:100928194	3'UTR	intron	translocation	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000151572	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CCSER1	LINC00871	+/.	+/.	4:91220634	14:46105952	intron	intron	translocation/5'-5'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000184305	ENSG00000258700	.	.	downstream	downstream	mismatches(1)	.	.	.
TRRAP	FP671120.4	+/.	+/.	7:98949490	21:8214790	CDS	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000196367	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HBB	FP565260.4	-/.	+/.	11:5225537	21:5012501	3'UTR	intron	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000279493	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HBB	DNMT3L-AS1	-/.	+/.	11:5225537	21:44250996	3'UTR	intron	translocation	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000232010	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC023632.3(701),AC023632.4(3451)	HBB	./.	-/.	8:94590960	11:5225537	intergenic	3'UTR	translocation	0	0	0	22	91	low	.	.	.	.	.	.	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4500),AP001994.1(77181)	FP236383.3	./.	+/.	11:119744123	21:8414018	intergenic	intron	translocation	0	0	0	3002	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
SALL2	FP236383.3	-/.	+/.	14:21526052	21:8442145	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000165821	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
POLE	FOLH1(43173),AC118942.1(53903)	-/-	./-	12:132650318	11:49251811	exon	intergenic	translocation	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL355981.1	FP671120.4	-/.	+/.	1:86824099	21:8214795	intron	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	ENSG00000284846	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
PEDS1-UBE2V1	AL592504.1(11588),TMEM47(98129)	-/.	./.	20:50139064	X:34528946	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000124208	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
TAB2(11980),ZC3H12D(23202)	TAB2(11989),ZC3H12D(23193)	./.	./.	6:149423593	6:149423602	intergenic	intergenic	duplication/ITD	0	0	0	86	86	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
NOTCH2(12177),RNU6-465P(14018)	U3(104498),GPC1(41722)	./.	./.	1:120112956	2:240393941	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),mismatches(3)	.	.	.
ANP32B	AL355863.1(134653),BTBD7P2(82877)	+/.	./.	9:97983496	10:111239901	5'UTR	intergenic	translocation	0	0	0	8	2	low	.	.	.	.	.	ENSG00000136938	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	12:105046145	12:105046190	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000136010	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TAB2(11977),ZC3H12D(23205)	TAB2(11986),ZC3H12D(23196)	./.	./.	6:149423590	6:149423599	intergenic	intergenic	duplication/ITD	0	0	0	86	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL118511.3(9423),TTC13(1032)	FAT1(23080),AC108865.1(141167)	./.	./.	1:230905211	4:186749802	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRP1B	FP236383.3	-/.	+/.	2:141137947	21:8397837	intron	intron	translocation/3'-3'	0	0	0	8	1126	low	.	.	.	.	.	ENSG00000168702	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023632.3(700),AC023632.4(3452)	AC025366.1(57830),AP005357.1(76639)	./.	./.	8:94590959	8:110690224	intergenic	intergenic	inversion	0	0	0	22	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4501),AP001994.1(77180)	FXNP1(22687),NRXN3(87408)	./.	./.	11:119744124	14:78082965	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
MIB2	RUNX1	+/+	-/-	1:1625669	21:34951103	exon	intron	translocation	0	0	0	3	0	low	.	.	Mib_herc2(100%),Mind_bomb_SH3_repeat_domain(49%),Zinc_finger__ZZ_type(100%)|Runt_domain(100%),Runx_inhibition_domain(100%)	.	.	ENSG00000197530	ENSG00000159216	.	.	downstream	downstream	mismatches(1)	.	.	.
AL591368.1(34388),RNA5SP287(74208)	FP236383.3	./.	+/.	9:81811288	21:8393308	intergenic	intron	translocation	0	0	0	0	20	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FABP6	FP236383.3	+/.	+/.	5:160238121	21:8397824	intron	intron	translocation	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000170231	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211687	21:8411580	intron	intron	inversion/3'-3'	0	0	0	136	3	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL009177.1	AL357146.1	+/.	+/.	6:14487262	6:140062366	intron	intron	duplication	0	0	0	0	2	low	.	.	.	.	.	ENSG00000286277	ENSG00000236013	.	.	upstream	downstream	mismatches(1)	.	.	.
MCF2L	PSTPIP2	+/.	-/.	13:113047527	18:46036695	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000126217	ENSG00000152229	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093627.22	OPCML	-/.	-/.	7:117610	11:132846099	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000287883	ENSG00000183715	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIPEPP2(31036),AL583825.1(32531)	LINC00189	./.	+/.	1:238810236	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000215533	.	.	downstream	downstream	mismatches(1)	.	.	.
TSPOAP1-AS1	FP236383.3	+/.	+/.	17:58385559	21:8434665	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
NAALADL2-AS3	WDR1(4340),AC093664.1(22078)	-/.	./.	3:175089638	4:10121289	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000230292	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GALNT2	RUFY4(18122),CXCR2(16586)	+/.	./.	1:230187485	2:218108703	intron	intergenic	translocation	0	0	0	0	193	low	.	.	.	.	.	ENSG00000143641	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SNAP47	DIXDC1	+/.	+/.	1:227740052	11:111932711	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000143740	ENSG00000150764	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	RGN(25227),RNU12-2P(14130)	+/.	./.	21:8397434	X:47118541	intron	intergenic	translocation	0	0	0	543	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02713(12560),AP001317.1(158121)	FAM81A	./.	+/.	11:97972118	15:59408380	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000157470	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TMPRSS13(31964),IL10RA(24947)	FP671120.4	./.	+/.	11:117961423	21:8214396	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
PAUPAR	FP236383.3	+/.	+/.	11:31981345	21:8400577	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000281880	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MAFG-DT	ENPP5	+/+	-/+	17:81928147	6:46166260	exon	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	ENSG00000112796	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF346	FBXW5	+/.	-/.	5:177029148	9:136943086	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113761	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC100805.1(59174),AC013701.1(30680)	AL583785.1(23837),LINC00583(67563)	./.	./.	8:48883236	9:13860408	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL138720.1	FP671120.3(464),FP671120.7(3979)	-/.	./.	6:14828424	21:8250613	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000234261	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
C16orf95	RUFY4(18122),CXCR2(16586)	-/-	./-	16:87317154	2:218108703	CDS	intergenic	translocation	0	0	0	0	193	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	downstream	duplicates(5),mismatches(5)	.	.	.
MRC2	TATDN2	+/+	+/+	17:62689980	3:10249513	CDS	CDS	translocation	0	0	0	0	0	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|TatD_related_DNase(100%)	.	.	ENSG00000011028	ENSG00000157014	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRC4B	RPL13P2(10863),CD40(7239)	-/.	./.	19:50548287	20:46111039	intron	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000131409	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NOS1	AC004687.2	-/.	-/.	12:117326664	17:58385557	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000089250	ENSG00000285897	.	.	downstream	downstream	mismatches(1)	.	.	.
GHR(6373),AC113368.1(887)	GHR(6382),AC113368.1(878)	./.	./.	5:42728251	5:42728260	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	3:19308651	3:19308662	intron	intron	duplication/ITD	0	0	0	119	119	low	.	.	.	.	.	ENSG00000183960	ENSG00000183960	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MTREX	NUDT12(105223),AC008505.1(212116)	+/.	./.	5:55418641	5:103668013	intron	intergenic	inversion	0	0	0	0	11	low	.	.	.	.	.	ENSG00000039123	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TUBBP11(353349),RAP1BP2(78778)	TBXT	./.	-/.	3:103984261	6:166166388	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164458	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
PHKG2	FP236383.3	+/.	+/.	16:30749090	21:8396230	intron	intron	translocation/5'-5'	0	0	0	221	0	low	.	.	.	.	.	ENSG00000156873	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
NRIP3	OPCML	-/-	-/+	11:9003964	11:132846099	5'UTR	intron	inversion/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000175352	ENSG00000183715	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL359237.1	FP671120.4	-/.	+/.	14:87766771	21:8217040	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000258807	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626662	X:18626675	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(51),low_entropy(10)	.	.	.
FP671120.4(3815),FP671120.10(3893)	FP236383.3	./.	+/.	21:8231461	21:8444659	intergenic	intron	deletion/read-through	0	0	0	38	18	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC200	FP236383.3	-/.	+/.	17:43251365	21:8444310	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000236383	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
APBA2	ADAMTS17	+/.	-/.	15:29078680	15:100273528	intron	intron	deletion/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000034053	ENSG00000140470	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PHIP	CHTF18	-/.	+/.	6:78947959	16:795868	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000146247	ENSG00000127586	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC005562.1	FP671120.4	+/.	+/.	17:30591105	21:8217546	intron	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000214719	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AL035078.4	FP236383.3	+/.	+/.	11:31981345	21:8400577	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000285283	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FIBIN(9775),BBOX1(33863)	SPPL2B	./.	+/.	11:27006862	19:2338920	intergenic	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	.	ENSG00000005206	.	.	downstream	downstream	mismatches(1)	.	.	.
STK10	RNU7-69P(11172),CHCHD2P1(1698)	-/.	./.	5:172090368	X:123783311	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000072786	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU1-45P(20704),AC095041.1(149130)	APBA2	./.	+/.	4:178137565	15:29078680	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000034053	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL122001.1(11435),FAAH(11927)	APBA2	./.	+/.	1:46382390	15:29078680	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000034053	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ERC2	AC104123.1	-/.	+/.	3:55815741	5:96361270	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000187672	ENSG00000251314	.	.	downstream	upstream	mismatches(1)	.	.	.
AC034187.1	IQCH-AS1	-/.	-/.	3:8591012	15:67310424	intron	intron	translocation/5'-5'	0	0	0	1	40	low	.	.	.	.	.	ENSG00000224884	ENSG00000259673	.	.	upstream	upstream	mismatches(1)	.	.	.
SYT2	PCAT1	-/.	+/.	1:202691724	8:126750696	intron	intron	translocation/5'-5'	0	0	0	22	18	low	.	.	.	.	.	ENSG00000143858	ENSG00000253438	.	.	upstream	downstream	mismatches	.	.	.
HYDIN2	KIAA0825	+/.	-/.	1:146551982	5:94395445	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000185261	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3509),ELMOD1(679)	./.	./.	11:107590331	11:107590412	intergenic	intergenic	duplication/ITD	0	0	0	1909	1914	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683460	15:81683469	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
LINC00114(198),ETS2(57525)	SETP8(279569),AC005002.1(154693)	./.	./.	21:38747658	X:117243245	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC105252.1(292285),AC079380.1(3753)	UNC5A	./.	+/.	4:133867493	5:176847697	intergenic	intron	translocation	0	0	0	11	2	low	.	.	.	.	.	.	ENSG00000113763	.	.	upstream	upstream	mismatches(1)	.	.	.
STX3	MT-RNR2	+/.	+/.	11:59717409	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166900	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
WNT3A	CDH8	+/+	-/-	1:228007075	16:61831043	5'UTR	intron	translocation	0	0	0	0	57	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000154342	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
VAV3	RGS6	-/.	+/.	1:107670554	14:72111284	intron	intron	translocation	0	0	0	20	3	low	.	.	.	.	.	ENSG00000134215	ENSG00000182732	.	.	downstream	downstream	duplicates(3),mismatches(3)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	15:33236808	15:33236864	exon	exon	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000215296	ENSG00000215296	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP58	AC244102.4	+/.	-/.	10:104396386	X:152576450	intron	intron	translocation	0	0	0	561	7	low	.	.	.	.	.	ENSG00000120051	ENSG00000287394	.	.	upstream	upstream	mismatches	.	.	.
KIAA2012	RAD18	+/.	-/.	2:202083777	3:8909455	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000182329	ENSG00000070950	.	.	downstream	upstream	mismatches(1)	.	.	.
AGAP1	PRKAR1B	+/.	-/.	2:235814153	7:651313	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000157985	ENSG00000188191	.	.	upstream	downstream	mismatches(1)	.	.	.
C16orf95	AL157371.1(67422),AL109615.3(75968)	-/-	./-	16:87317152	6:43919755	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FKBP15	DNTT	-/.	+/.	9:113219133	10:96333569	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000119321	ENSG00000107447	.	.	upstream	downstream	mismatches(2)	.	.	.
CDH8	FP671120.3(463),FP671120.7(3980)	-/.	./.	16:61831043	21:8250612	intron	intergenic	translocation	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MIER1	LINC00871	+/.	+/.	1:66935376	14:46105933	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000198160	ENSG00000258700	.	.	downstream	upstream	mismatches(2)	.	.	.
TRIML2(3902),RNU6-173P(8026)	ZNF704	./.	-/.	4:188113505	8:80704208	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164684	.	.	downstream	upstream	mismatches(1)	.	.	.
AC018470.1	CAMTA1	-/-	+/-	2:174336422	1:7054072	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280414	ENSG00000171735	.	.	upstream	downstream	mismatches(1)	.	.	.
BBX	LINC01608	+/.	-/.	3:107757258	8:110977288	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000114439	ENSG00000253877	.	.	downstream	upstream	mismatches(1)	.	.	.
CLDN22	LINC01287(16430),PAXBP1P1(19014)	-/.	./.	4:183319654	7:153430415	CDS	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000177300	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MIER1	DNTT	+/.	+/.	1:66935377	10:96333569	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000198160	ENSG00000107447	.	.	downstream	downstream	mismatches(2)	.	.	.
AKR1B1P6(39769),RAB12(22851)	FP671120.4	./.	+/.	18:8586586	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(4)	.	.	.
ALG14(42804),TLCD4(1600)	CCDC88C	./.	-/.	1:95115755	14:91363805	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000015133	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC008691.1	ZIC3	+/.	+/.	5:159645741	X:137574882	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000156925	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNG6(12136),AC012314.9(6607)	WNK3(4584),TSR2(77178)	./.	./.	19:54024805	X:54363226	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL031282.2	ZMAT4	-/.	-/.	1:1709359	8:40593934	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000268575	ENSG00000165061	.	.	upstream	upstream	mismatches(1)	.	.	.
ZRANB3	DNTT	-/.	+/.	2:135144415	10:96333569	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000121988	ENSG00000107447	.	.	upstream	downstream	mismatches(2)	.	.	.
AP005436.1	FXNP1(22701),NRXN3(87394)	-/.	./.	11:88092448	14:78082979	intron	intergenic	translocation	0	0	0	718	424	low	.	.	.	.	.	ENSG00000255102	.	.	.	downstream	upstream	low_entropy	.	.	.
ADAM12	LINC00871	-/.	+/.	10:126095881	14:46105933	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000148848	ENSG00000258700	.	.	upstream	upstream	mismatches(2)	.	.	.
LINC02036	PDS5A	-/.	-/.	3:194204601	4:39875783	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000225742	ENSG00000121892	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC010970.1	FP236383.3	-/-	+/+	Y:10197467	21:8442044	exon	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000225840	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DNTT	PWRN4	+/.	+/.	10:96333569	15:23982640	intron	intron	translocation/5'-5'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000107447	ENSG00000260232	.	.	downstream	downstream	mismatches(2)	.	.	.
GRM3	PXDNL	+/.	-/.	7:86815869	8:51761710	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198822	ENSG00000147485	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF141	AC006504.5	+/.	+/.	4:375615	19:27961840	3'UTR	intron	translocation/3'-3'	0	0	0	1	4	low	.	.	.	.	.	ENSG00000131127	ENSG00000267575	.	.	upstream	upstream	mismatches(1)	.	.	.
SMYD2	AC091167.2	+/.	+/.	1:214296555	15:90270297	intron	intron	translocation/3'-3'	0	0	0	14	14	low	.	.	.	.	.	ENSG00000143499	ENSG00000261147	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NAALADL2	SLC12A2	+/.	+/.	3:175349066	5:128132315	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177694	ENSG00000064651	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SOHLH1	LRP1B	-/-	-/-	9:135701095	2:141137946	exon	intron	translocation	0	0	0	2	8	low	.	.	|Calcium-binding_EGF_domain(48%),Coagulation_Factor_Xa_inhibitory_site(100%),Complement_Clr-like_EGF-like(100%),Domain_of_unknown_function_(DUF5050)(100%),EGF-like_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(93%),Low-density_lipoprotein_receptor_repeat_class_B(91%)	.	.	ENSG00000165643	ENSG00000168702	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	FP671120.4	./.	+/.	3:95431526	21:8214397	intergenic	intron	translocation	0	0	0	45	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(12),mismatches(9)	.	.	.
PDS5A	ITPR2(251),INTS13(71736)	-/.	./.	4:39875782	12:26833445	intron	intergenic	translocation	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC013460.1(78046),RNU6ATAC37P(48251)	LINC02309(365177),LINC01148(139316)	./.	./.	2:7528590	14:86766462	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MYT1L(85624),AC018685.2(220890)	Y_RNA(92916),RNA5SP103(1238)	./.	./.	2:2417288	2:128443843	intergenic	intergenic	inversion	0	0	0	12	7	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PHKG2	WIPF2	+/.	+/.	16:30749091	17:40255775	intron	intron	translocation	0	0	0	221	0	low	.	.	.	.	.	ENSG00000156873	ENSG00000171475	.	.	downstream	upstream	mismatches(1)	.	.	.
DHCR7	FP671120.4	-/.	+/.	11:71429752	21:8209905	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172893	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
FRMD6-AS2	IFT43(29893),AC016526.4(17229)	-/.	./.	14:51587852	14:76114478	intron	intergenic	inversion	0	0	0	0	2	low	.	.	.	.	.	ENSG00000258537	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MT-RNR2	MT-RNR2	+/.	+/.	MT:1971	MT:2217	exon	exon	inversion/3'-3'	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(2)	.	.	.
KRT8P25(238055),APOOP2(32060)	EXT1(36954),SAMD12(40675)	./.	./.	3:87562778	8:118148780	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC021678.2	AC079949.3	-/.	+/.	8:28332986	12:127165978	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253690	ENSG00000286016	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRNR2L1	MT-RNR2	+/.	+/.	17:22523881	MT:2609	5'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000256618	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394722	21:8420287	intron	intron	inversion/3'-3'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	AL031600.2	./.	-/.	2:53114408	16:1471974	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261430	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479886	X:133661638	intron	intron	translocation/3'-3'	0	0	0	2216	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092348	11:88092446	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(19),low_entropy(23)	.	.	.
AC073346.1(93989),AC073137.1(175370)	AP003390.1(4493),AP001994.1(77188)	./.	./.	7:113240319	11:119744116	intergenic	intergenic	translocation	0	0	0	5	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
AC003975.1(423134),AC000372.1(22004)	DLG2	./.	-/.	7:126356966	11:85484010	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002463.1	SLC25A52(976),TRAPPC8(67341)	+/.	./.	7:112751479	18:31761856	intron	intergenic	translocation	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EBF2(345),RNA5SP258(91122)	FP236383.3	./.	+/.	8:26045758	21:8442048	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RBFOX1	AC006486.3	+/.	-/.	16:6222320	19:42217199	intron	intron	translocation/3'-3'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000078328	ENSG00000288671	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
FAM53C	CNOT1	+/.	-/.	5:138338390	16:58543813	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000120709	ENSG00000125107	.	.	upstream	downstream	mismatches	.	.	.
WAC	PDS5A	+/+	-/-	10:28533924	4:39875783	5'UTR	intron	translocation	0	0	0	4	11	low	.	.	.	.	.	ENSG00000095787	ENSG00000121892	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DISC1FP1	VWA8	+/.	-/.	11:90413873	13:41961031	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261645	ENSG00000102763	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	11:3702314	11:3702327	intron	intron	duplication/ITD	0	0	0	179	159	low	.	.	.	.	.	ENSG00000110713	ENSG00000110713	.	.	upstream	downstream	duplicates(102),low_entropy(16)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397824	21:8437076	intron	intron	inversion/3'-3'	0	0	0	1126	55	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
FENDRR	PHF21B	-/.	-/.	16:86508069	22:44947374	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000268388	ENSG00000056487	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02864	5_8S_rRNA(1687),FP236383.3(122023)	-/.	./.	18:73168244	21:8258620	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000263711	.	.	.	upstream	upstream	duplicates(10),mismatches(5)	.	.	.
FP236383.3	AC004882.1(46),CABP7(98)	+/.	./.	21:8397816	22:29719905	intron	intergenic	translocation	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021203	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(13),low_entropy(1),merge_adjacent	.	.	.
ARID4B	IFT43(29893),AC016526.4(17229)	-/.	./.	1:234997587	14:76114478	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000054267	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CNTNAP3	CLBA1	-/.	+/.	9:39158315	14:105000768	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000106714	ENSG00000140104	.	.	downstream	downstream	mismatches(1)	.	.	.
MCPH1-AS1	ACTE1P	-/.	-/.	8:6678107	11:71396444	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000249898	ENSG00000172900	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP3K8(27800),HNRNPA1P32(27983)	LINC00866	./.	-/.	10:30489633	10:97837203	intergenic	intron	inversion	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000227356	.	.	downstream	downstream	mismatches(1)	.	.	.
DMD	MT-RNR2	-/.	+/.	X:31339021	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000198947	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ADGRD2	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	9:124473541	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000180264	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MEIS1	MEIS1	+/.	+/.	2:66555255	2:66555270	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000143995	ENSG00000143995	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
FP671120.4	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	21:8206231	21:8259021	intron	intergenic	deletion/read-through	0	0	0	4	6	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	duplicates(10),mismatches(6)	.	.	.
AC006994.1	CLBA1	+/+	+/-	2:210230824	14:105000768	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000279317	ENSG00000140104	.	.	downstream	downstream	mismatches(1)	.	.	.
DLG2	AL139383.1	-/.	-/.	11:85484188	13:33517097	intron	intron	translocation	0	0	0	279	2	low	.	.	.	.	.	ENSG00000150672	ENSG00000230490	.	.	upstream	downstream	mismatches(2)	.	.	.
VLDLR	FP236383.3	+/+	+/+	9:2656061	21:8442660	3'UTR	intron	translocation	0	0	0	8	23	low	.	.	Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%)|	.	.	ENSG00000147852	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
AC079612.1(1174),AC079612.2(38430)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	2:239587268	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LIMD1	MED15P1(3053),AL929601.1(414)	+/.	./.	3:45593628	14:18919695	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL391597.1(30817),CR2(7177)	LINC00189	./.	+/.	1:207447053	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000215533	.	.	downstream	downstream	mismatches(1)	.	.	.
LSP1	FP236383.3	+/.	+/.	11:1851888	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000130592	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ATP8B4	ATP8B4	-/.	-/.	15:50072926	15:50072937	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000104043	ENSG00000104043	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AUTS2	AC009806.1(63109),AC107881.1(15250)	+/+	./-	7:70694495	11:12604076	5'UTR	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000158321	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL355981.1	5_8S_rRNA(2091),FP236383.3(121619)	-/.	./.	1:86824099	21:8259024	intron	intergenic	translocation	0	0	0	5	6	low	.	.	.	.	.	ENSG00000284846	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLCO5A1	PHKB	-/.	+/.	8:69690369	16:47502226	intron	intron	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000102893	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916414	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
AUTS2	TCF7L2	+/+	+/+	7:70694494	10:113117445	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|HMG_(high_mobility_group)_box(100%),N-terminal_CTNNB1_binding(24%)	.	.	ENSG00000158321	ENSG00000148737	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262589	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
THADA	AL163541.1	-/.	-/.	2:43464623	13:109602694	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115970	ENSG00000285534	.	.	upstream	upstream	mismatches(1)	.	.	.
CDH8	FP671120.3(3892),FP671120.7(551)	-/.	./.	16:61831043	21:8254041	intron	intergenic	translocation	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683460	15:81683469	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
RUFY4(18121),CXCR2(16587)	TEDC1	./.	+/.	2:218108702	14:105493962	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000185347	.	.	downstream	downstream	duplicates(2),homopolymer(2)	.	.	.
SHE	FP671120.4	-/.	+/.	1:154469819	21:8215097	3'UTR	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000169291	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
PHF6(23323),HPRT1(8051)	PHF6(23336),HPRT1(8038)	./.	./.	X:134452114	X:134452127	intergenic	intergenic	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
UBBP4	FP236383.3	+/.	+/.	17:22095184	21:8445488	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000263563	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00871	AC078909.2(29618),Metazoa_SRP(77015)	+/.	./.	14:46105933	15:37139602	intron	intergenic	translocation	0	0	0	25	0	low	.	.	.	.	.	ENSG00000258700	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
APBA2	ACSL4	+/.	-/.	15:29078680	X:109651515	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000034053	ENSG00000068366	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SMYD2	IQCH-AS1	+/.	-/.	1:214296571	15:67310435	intron	intron	translocation/5'-5'	0	0	0	14	40	low	.	.	.	.	.	ENSG00000143499	ENSG00000259673	.	.	downstream	upstream	duplicates(7),mismatches(5)	.	.	.
AC004852.2(134346),GAPDHP68(290775)	PDE1C	./.	-/.	7:9324203	7:32200977	intergenic	intron	deletion	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000154678	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
PPP2CB	LINC00189	-/.	+/.	8:30802688	21:29263475	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000104695	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021215	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(299),low_entropy(14)	.	.	.
LSAMP	AC092100.1	-/.	-/.	3:115895597	7:69204253	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000185565	ENSG00000225718	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392808	1:90392817	intron	intron	duplication/ITD	0	0	0	312	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749060	intron	intron	translocation/5'-5'	0	0	0	0	283	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC007389.1	FP236383.3	+/.	+/.	2:65805820	21:8398841	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000204929	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX16	LINC02620	-/.	-/.	8:81842439	10:104479909	intron	intron	translocation	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000104497	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275723	13:49275781	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL450992.1	CDH12	+/.	-/.	1:152029359	5:22594933	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229021	ENSG00000154162	.	.	upstream	upstream	mismatches(1)	.	.	.
AL138720.1(7180),AL050335.1(5596)	ADK	./.	+/.	6:15097350	10:74578309	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000156110	.	.	upstream	upstream	mismatches(1)	.	.	.
AL359636.2	FP236383.3	+/.	+/.	9:122558263	21:8445488	intron	intron	translocation	0	0	0	15	6	low	.	.	.	.	.	ENSG00000234156	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
PIN1P1	AC012060.1(92676),LINC02248(36443)	+/+	./-	1:69919786	15:26358594	exon	intergenic	translocation	0	0	0	6	71	low	.	.	.	.	.	ENSG00000229359	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
DUX4L11	PGLYRP1	+/+	-/+	10:133747725	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000278761	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092330	11:88092344	intron	intron	duplication/ITD	0	0	0	1166	513	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PTPRD	TRIM5	-/.	-/.	9:8770683	11:5936976	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000153707	ENSG00000132256	.	.	downstream	upstream	mismatches(1)	.	.	.
MTNR1A(19229),FAT1(12998)	AL049541.2(5606),RNU7-144P(11075)	./.	./.	4:186574796	20:48483159	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL391832.4	RALGDS	-/.	-/.	1:234906873	9:133148049	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286263	ENSG00000160271	.	.	upstream	upstream	mismatches(1)	.	.	.
AC005699.1	IQGAP1	+/.	+/.	4:11719947	15:90428479	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000249631	ENSG00000140575	.	.	downstream	downstream	mismatches(1)	.	.	.
CCDC178	FP236383.3	-/.	+/.	18:32975568	21:8400579	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000166960	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DCC	DCC	+/.	+/.	18:52474207	18:52474222	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000187323	ENSG00000187323	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275721	13:49275796	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NUFIP1P1(153075),AL450336.1(462258)	ADARB2	./.	-/.	6:66247984	10:1394276	intergenic	intron	translocation	0	0	0	4	2	low	.	.	.	.	.	.	ENSG00000185736	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01237	AC078980.1	+/.	+/.	2:241961648	3:109700822	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233806	ENSG00000242029	.	.	upstream	upstream	mismatches(3)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749067	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
AL512357.2(6022),AL512357.1(75587)	5_8S_rRNA(475),FP236383.3(123235)	./.	./.	14:104300943	21:8257408	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3439),ELMOD1(749)	AP001823.1(3538),ELMOD1(650)	./.	./.	11:107590342	11:107590441	intergenic	intergenic	duplication/ITD	0	0	0	1914	672	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC093725.2(9059),AC093725.1(52176)	FP236383.3	./.	+/.	4:57667859	21:8397799	intergenic	intron	translocation	0	1	0	0	5614	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),min_support	.	.	.
AC079612.2(94233),AC093802.2(9884)	FP671120.4	./.	+/.	2:239725072	21:8214801	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LYPD6(60748),MMADHC(34751)	OR4A44P(124090),AC027369.6(127528)	./.	./.	2:149534886	11:48752583	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
OCIAD2(9622),RNU6-158P(16196)	LINC02444	./.	+/.	4:48916559	12:73182054	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000258123	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.22	HBB	-/.	-/.	7:117611	11:5225537	intron	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	ENSG00000287883	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
AC091893.1(11701),AC106821.2(10671)	PCNT	./.	+/.	5:24761473	21:46422072	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000160299	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4504),AP001994.1(77177)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744127	15:44288393	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
CIAO3	AC004943.2	-/-	+/+	16:737080	16:72764736	exon	intron	inversion	0	0	0	3	2	low	.	.	.	.	.	ENSG00000103245	ENSG00000259768	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NDUFA4P1(65057),VAV3(656)	KMT2A	./.	+/.	1:107570505	11:118436772	intergenic	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000118058	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC4A10	LINC02745	+/.	-/.	2:161763874	11:42029389	intron	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000144290	ENSG00000255300	.	.	downstream	upstream	mismatches(1)	.	.	.
ERI3	NMRK2(8878),DAPK3(7159)	-/.	./.	1:44320094	19:3951294	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
C1D	LRR1	-/.	+/.	2:68065407	14:49599727	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197223	ENSG00000165501	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8207209	21:8394735	intron	intron	deletion/read-through	0	0	0	4	154	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	NGB	./.	-/.	11:107590331	14:77269807	intergenic	intron	translocation	0	0	0	1909	32	low	.	.	.	.	.	.	ENSG00000165553	.	.	upstream	downstream	mismatches	.	.	.
AC116362.1	AC019117.1	-/.	-/.	5:125774674	7:17532330	intron	intron	translocation/3'-3'	0	0	0	1	5	low	.	.	.	.	.	ENSG00000248752	ENSG00000236039	.	.	downstream	downstream	mismatches(1)	.	.	.
ATR	PPP1R12A	-/.	-/.	3:142462333	12:79875396	intron	intron	translocation	0	0	0	4	6	low	.	.	.	.	.	ENSG00000175054	ENSG00000058272	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
U91319.1(53504),U95743.1(111762)	GNL3L	./.	+/.	16:13616892	X:54578338	intergenic	intron	translocation	0	0	0	2	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	downstream	downstream	duplicates(2),mismatches(3)	.	.	.
ZNF536	ZNF536	+/.	+/.	19:30664220	19:30664229	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000198597	ENSG00000198597	.	.	upstream	downstream	low_entropy(1)	.	.	.
NRIP3	LINC00240(53),VN1R13P(563)	-/-	./+	11:9003964	6:27059802	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MICOS10	5_8S_rRNA(1480),FP236383.3(122230)	+/.	./.	1:19543428	21:8258413	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173436	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48400),TPT1P1(55534)	./.	./.	2:128340558	21:31784807	intergenic	intergenic	translocation	0	0	0	35	90	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
DHCR7	CR392039.1(1016),CR392039.3(8050)	-/.	./.	11:71429752	21:8988446	intron	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000172893	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC027031.2(80998),OXR1(5576)	DLG2	./.	-/.	8:106353900	11:84052132	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNND2	DACT2(25895),AL138918.1(29025)	-/.	./.	5:11535781	6:168345672	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000169862	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HYDIN2	LHFPL6(5812),COG6(46287)	+/.	./.	1:146551982	13:39609340	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SLC22A15(28594),MAB21L3(13107)	C7orf33	./.	+/.	1:116098648	7:148605538	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000170279	.	.	downstream	upstream	mismatches(1)	.	.	.
SERTAD2(537),RN7SL341P(65836)	ERN2	./.	-/.	2:64751542	16:23702061	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000134398	.	.	downstream	downstream	mismatches(1)	.	.	.
INSRR	AC093627.22	-/.	-/.	1:156849597	7:117609	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000027644	ENSG00000287883	.	.	upstream	upstream	mismatches(1)	.	.	.
GCNT1	ERCC1	+/.	-/.	9:76571859	19:45428713	intron	intron	translocation/3'-3'	0	0	0	38	0	low	.	.	.	.	.	ENSG00000187210	ENSG00000012061	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GCNT2	EFCAB11	+/.	-/.	6:10627254	14:89875130	3'UTR	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	ENSG00000140025	.	.	upstream	downstream	mismatches(1)	.	.	.
TOGARAM2	FP236383.3	+/.	+/.	2:29042539	21:8442060	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000189350	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009505.1	CLBA1	-/.	+/.	2:105949138	14:105000768	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000234162	ENSG00000140104	.	.	upstream	downstream	mismatches(1)	.	.	.
PPARG	CRADD	+/.	+/.	3:12372142	12:93846255	intron	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000132170	ENSG00000169372	.	.	upstream	downstream	mismatches(2)	.	.	.
AL358053.1(206657),AL591644.1(221024)	AL358053.1(206666),AL591644.1(221015)	./.	./.	9:1756760	9:1756769	intergenic	intergenic	duplication/ITD	0	0	0	11	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC092666.1	ZZEF1	+/.	-/.	7:150046516	17:4006415	intron	3'UTR	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000241449	ENSG00000074755	.	.	upstream	downstream	mismatches(1)	.	.	.
HIVEP2	FP236383.3	-/.	+/.	6:142946387	21:8438947	intron	intron	translocation/3'-3'	0	0	0	63	139	low	.	.	.	.	.	ENSG00000010818	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SMARCA5	RPL6P21(23500),DGKB(50169)	+/.	./.	4:143546426	7:14094880	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000153147	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PLAAT1	SGMS1	+/+	-/+	3:193241375	10:50512135	CDS	intron	translocation/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000127252	ENSG00000198964	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL390334.1(278),BNIP3P1(418826)	SIAH1P1(24551),AL161722.1(59296)	./.	./.	14:27845564	X:35651615	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SNX16	AP003390.1(4498),AP001994.1(77183)	-/.	./.	8:81842436	11:119744121	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
OR2K2	CHST15(269175),OAT(34530)	-/.	./.	9:111329302	10:124362773	intron	intergenic	translocation	0	0	0	10	5	low	.	.	.	.	.	ENSG00000171133	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SAMD12	AC006486.3	-/.	-/.	8:118554924	19:42217199	intron	intron	translocation/3'-3'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	ENSG00000288671	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
NFE2L2	5_8S_rRNA(1691),FP236383.3(122019)	-/.	./.	2:177254991	21:8258624	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000116044	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAX3	DDB2	-/.	+/.	2:222298765	11:47233100	5'UTR	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135903	ENSG00000134574	.	.	downstream	downstream	homopolymer(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8212189	21:8397911	intron	intron	deletion/read-through	0	0	0	4	79	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214790	21:8392866	intron	intron	inversion/3'-3'	0	0	0	5263	43	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
SAMD3	MRPS28	-/.	-/.	6:130180681	8:79952408	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164483	ENSG00000147586	.	.	upstream	upstream	duplicates(2),mismatches(3)	.	.	.
FAM153CP(24223),N4BP3(2780)	AC109630.1	./.	+/.	5:178110752	15:39489485	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259269	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	PAXBP1(165),C21orf62-AS1(143)	+/.	./.	21:8220961	21:32771957	intron	intergenic	inversion	0	0	0	3	466	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	downstream	mismatches	.	.	.
AC106870.3	GDI2	-/.	-/.	2:29845746	10:5812961	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288553	ENSG00000057608	.	.	upstream	upstream	mismatches(1)	.	.	.
AC108073.3	FP671120.4	-/.	+/.	4:187943695	21:8217544	exon	intron	translocation/3'-3'	0	0	0	13	25	low	.	.	.	.	.	ENSG00000286641	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SIL1	C18orf63	-/.	+/.	5:139105650	18:74335215	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000120725	ENSG00000206043	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
TLL1	RPSAP52	+/.	-/.	4:165998369	12:65767071	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000038295	ENSG00000241749	.	.	downstream	downstream	mismatches(1)	.	.	.
DHRS9	FXNP1(22675),NRXN3(87420)	+/.	./.	2:169080000	14:78082953	intron	intergenic	translocation	0	0	0	29	336	low	.	.	.	.	.	ENSG00000073737	.	.	.	downstream	upstream	mismatches	.	.	.
LINC01068(56234),AL136442.1(9754)	RN7SKP181(331438),LINC02253(41990)	./.	./.	13:79627679	15:97173822	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214790	21:8437076	intron	intron	inversion/3'-3'	0	0	0	5263	55	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
C7orf50	GDF15	-/.	+/.	7:1042568	19:18380295	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146540	ENSG00000130513	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC021146.5	FP236383.3	-/.	+/.	4:68986258	21:8397434	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000249735	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(3)	.	.	.
ADGRL4	ADGRL4	-/.	-/.	1:79204469	1:79204482	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000162618	ENSG00000162618	.	.	upstream	downstream	duplicates(10),low_entropy(2)	.	.	.
RORA	HYDIN	-/.	-/.	15:60974094	16:71158143	intron	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	ENSG00000069667	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
VIT	CMKLR1	+/.	-/.	2:36729921	12:108321077	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000205221	ENSG00000174600	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2086),FP236383.3(121624)	+/.	./.	21:8209831	21:8259019	intron	intergenic	inversion	0	0	0	48	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
OR6C70	UBBP4	-/.	+/.	12:55469551	17:22095184	CDS	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000184954	ENSG00000263563	.	.	downstream	upstream	mismatches(1)	.	.	.
SEMA3D(128948),DYNLL1P7(65315)	C7orf33	./.	+/.	7:85315803	7:148605538	intergenic	intron	inversion	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000170279	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS7P4(20662),COX6B1P7(18671)	OCIAD2(9622),RNU6-158P(16196)	./.	./.	1:68263717	4:48916559	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF346	SEMA6B(16478),AC011498.5(22940)	+/.	./.	5:177029143	19:4598254	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113761	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8217335	MT:1791	intron	exon	translocation/3'-3'	0	0	0	4	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
PGBD2	CHST11	+/.	+/.	1:248906244	12:104650704	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185220	ENSG00000171310	.	.	upstream	upstream	mismatches(1)	.	.	.
AL157371.1(67423),AL109615.3(75967)	FP671120.4	./.	+/.	6:43919756	21:8214799	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
CADM2	AL163541.1	+/.	-/.	3:85836871	13:109602694	intron	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000175161	ENSG00000285534	.	.	upstream	upstream	mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	21:39679809	21:39679822	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000225330	ENSG00000225330	.	.	upstream	downstream	duplicates(8),low_entropy(6)	.	.	.
DPP10	FP236383.3	+/.	+/.	2:114672372	21:8442052	intron	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	ENSG00000175497	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
CDK5P1(3500),AC016405.3(6321)	CDK5P1(3567),AC016405.3(6254)	./.	./.	8:122773650	8:122773717	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
PGBD2	ZNF883	+/.	-/.	1:248906244	9:113010077	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185220	ENSG00000285447	.	.	upstream	upstream	mismatches(1)	.	.	.
AL354809.1	ACSM3	+/.	+/.	13:39108817	16:20684033	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000273507	ENSG00000005187	.	.	upstream	upstream	mismatches(1)	.	.	.
DOCK7	KCNK1	-/.	+/.	1:62631984	1:233615174	intron	intron	duplication/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000116641	ENSG00000135750	.	.	upstream	downstream	mismatches(1)	.	.	.
ADARB2	AC233701.1(6458),MIR4739(96797)	-/.	./.	10:1293102	17:79610379	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185736	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092383	intron	intron	translocation/3'-3'	0	0	0	558	1170	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
AL356157.3(30449),AL356157.1(45338)	MBP(21713),AC100863.1(24710)	./.	./.	10:44545870	18:77155396	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC090204.1	CCNB2	+/.	+/.	8:33013509	15:59122737	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000247134	ENSG00000157456	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
LINC01320	5_8S_rRNA(1695),FP236383.3(122015)	+/.	./.	2:33767498	21:8258628	intron	intergenic	translocation	0	0	0	72	44	low	.	.	.	.	.	ENSG00000228262	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
MLLT10(12025),DNAJC1(893)	RPS10P21(63188),AL139003.1(476536)	./.	./.	10:21755655	13:71977366	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8442048	MT:1971	intron	exon	translocation/3'-3'	0	0	0	5962	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RIF1	MN1(31686),PITPNB(18227)	+/.	./.	2:151441479	22:27833442	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000080345	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SIM1	SIM1	-/.	-/.	6:100457994	6:100458071	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000112246	ENSG00000112246	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC009879.3(3264),VXN(3264),MYBL1(40387)	AP000282.1	./.	-/.	8:66521788	21:32936437	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000227757	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	5_8S_rRNA(2114),FP236383.3(121596)	./.	./.	2:240393940	21:8259047	intergenic	intergenic	translocation	0	0	0	357	5911	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785700	2:101785799	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LIN52(32940),VSX2(5274)	TIAM1	./.	-/.	14:74234175	21:31286128	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000156299	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092353.2(58337),LINC02229(8687)	CDX2(8076),URAD(326)	./.	./.	5:66498693	13:27977391	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC006058.1(5932),TOPAZ1(113589)	ESR1	./.	+/.	3:44128297	6:152095351	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000091831	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4373),AP001994.1(77308)	AP003390.1(4381),AP001994.1(77300)	./.	./.	11:119743996	11:119744004	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96618113	21:8444603	5'UTR	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
U3(104494),GPC1(41726)	AC135782.1(19635),ACSF3(15774)	./.	./.	2:240393937	16:89072601	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
H3P28(100180),AL355297.2(11600)	MCM4(993),RNU6-519P(261)	./.	./.	6:156762617	8:47979153	intergenic	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LTBP2	CDH8	-/.	-/.	14:74533689	16:61831043	intron	intron	translocation/3'-3'	0	0	0	0	57	low	.	.	.	.	.	ENSG00000119681	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	LTBP2	./.	-/.	8:17155256	14:74533689	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000119681	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	AP001458.2	+/.	-/.	10:104396370	11:62653855	intron	intron	translocation/3'-3'	0	0	0	558	36	low	.	.	.	.	.	ENSG00000120051	ENSG00000255432	.	.	upstream	downstream	low_entropy	.	.	.
RNU6-393P(16786),TMEM130(34878)	AC025580.2	./.	+/.	7:98811610	15:45463190	intergenic	intron	translocation	0	0	0	1	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749043	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
FHIT	MT-RNR1	-/.	+/.	3:60578626	MT:1503	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000189283	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
CHST15(269175),OAT(34530)	CDH8	./.	-/.	10:124362773	16:61831043	intergenic	intron	translocation	0	0	0	5	57	low	.	.	.	.	.	.	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749058	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
EVX2	AC105094.2	-/.	-/.	2:176083067	18:61699624	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000174279	ENSG00000267175	.	.	downstream	upstream	mismatches(1)	.	.	.
CWH43(138473),AC118282.3(2617)	MLLT10(12025),DNAJC1(893)	./.	./.	4:49200554	10:21755655	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC9C1	DHFR	-/.	-/.	3:112153433	5:80651215	intron	intron	translocation/3'-3'	0	0	0	0	128	low	.	.	.	.	.	ENSG00000172139	ENSG00000228716	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
TADA3	FP671120.4	-/.	+/.	3:9792515	21:8207899	5'UTR	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000171148	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3525),ELMOD1(663)	./.	./.	11:107590331	11:107590428	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SYT14	CDH13	+/.	+/.	1:210031351	16:83240630	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000143469	ENSG00000140945	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GGT7	DUX4L2(81226),DUX4(269)	-/-	./-	20:34845114	4:190173505	3'UTR	intergenic	translocation	0	0	0	75	0	low	.	.	Gamma-glutamyltranspeptidase(100%)|	.	.	ENSG00000131067	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNAB3	AP001599.1	-/.	+/.	17:7929460	21:26914103	5'UTR	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000170049	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
CR589904.2	FP236383.3	-/.	+/.	1:248727096	21:8444814	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000286015	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
OR5D3P(24082),OR5D17P(1274)	GPM6B	./.	-/.	11:55753703	X:13937196	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000046653	.	.	upstream	upstream	mismatches(1)	.	.	.
CCDC178	MT-RNR2	-/.	+/.	18:32975568	MT:1963	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000166960	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SPATA7	5_8S_rRNA(2082),FP236383.3(121628)	+/.	./.	14:88427078	21:8259015	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000042317	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211698	21:8444656	intron	intron	deletion/read-through	0	0	0	0	18	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PGBD2	AC019183.1	+/.	+/.	1:248906244	18:1762158	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185220	ENSG00000266450	.	.	upstream	upstream	mismatches(1)	.	.	.
TPTE2P1(13485),RPL34P27(6605)	FP565260.4	./.	+/.	13:24981972	21:5012499	intergenic	intron	translocation	0	0	0	5	1	low	.	.	.	.	.	.	ENSG00000279493	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104803.1(233705),LINC00290(71346)	SLC36A4	./.	-/.	4:180992743	11:93184706	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000180773	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SPATA7	FP236383.3	+/.	+/.	14:88427078	21:8442050	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000042317	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TPTE2P1(13485),RPL34P27(6605)	DNMT3L	./.	-/.	13:24981972	21:44250998	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000142182	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093912.1(103819),AC073062.1(102171)	FP236383.3	./.	+/.	2:13435502	21:8397434	intergenic	intron	translocation	0	0	0	28	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(4)	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	2:237784949	15:45462584	intron	intron	translocation	0	0	0	67	23	low	.	.	.	.	.	ENSG00000124831	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
TATDN2	FP236383.3	+/.	+/.	3:10249514	21:8442060	CDS	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000157014	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
MON1B	SH3YL1	+/+	-/+	16:77194710	2:253463	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	First_Longin_domain_of_FUZ__MON1_and_HPS1(100%),Second_Longin_domain_of_FUZ__MON1_and_HPS1(8%)|	.	.	ENSG00000103111	ENSG00000035115	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DTNA	ZNF274	+/.	+/.	18:34571660	19:58200776	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134769	ENSG00000171606	.	.	downstream	upstream	mismatches(1)	.	.	.
GCNT2	5_8S_rRNA(1467),CT867976.1(223318)	+/.	./.	6:10627254	22:11251426	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC103796.1	AL035079.1(18426),CIR1P3(7505)	-/.	./.	11:27781140	11:34423375	intron	intergenic	duplication	0	0	0	5	0	low	.	.	.	.	.	ENSG00000255496	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C7orf50(7980),ZFAND2A(5831)	ERN2	./.	-/.	7:1146240	16:23702061	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000134398	.	.	downstream	downstream	mismatches(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479885	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AC106795.1	AC025580.2	+/.	+/.	5:177876243	15:45462583	intron	intron	translocation/5'-5'	0	0	0	68	23	low	.	.	.	.	.	ENSG00000170089	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
ZNF462	MACROD2	+/.	+/.	9:106877178	20:15209116	intron	intron	translocation	0	0	0	3	68	low	.	.	.	.	.	ENSG00000148143	ENSG00000172264	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
MLLT10(12025),DNAJC1(893)	NR1D1(11174),AC068669.1(1452)	./.	./.	10:21755655	17:40111763	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ACMSD	ACMSD	+/.	+/.	2:134845510	2:134845525	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000153086	.	.	upstream	downstream	duplicates(10),low_entropy(5)	.	.	.
CLIP3	AC008957.1	-/-	-/+	19:36026157	5:36692149	CDS	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	ENSG00000250155	.	.	upstream	upstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	ZNF462	./.	+/.	1:208413786	9:106877176	intergenic	intron	translocation	0	0	0	68	3	low	.	.	.	.	.	.	ENSG00000148143	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
RGMB	ASTN2	+/.	-/.	5:98771454	9:116626790	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	ENSG00000148219	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	AC011498.1	./.	-/.	4:186749803	19:4461813	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000267011	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093765.2	FP236383.3	+/.	+/.	4:116876481	21:8442055	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000286637	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL158064.1	AC073578.1	-/-	-/-	13:80074588	12:131494969	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000284196	ENSG00000256209	.	.	upstream	downstream	mismatches(1)	.	.	.
GAPDHP36(89381),RALBP1P1(20618)	LPP	./.	+/.	3:180302489	3:188587619	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000145012	.	.	upstream	downstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626666	X:18626675	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
EPHA3	IQCJ-SCHIP1	+/.	+/.	3:89393759	3:159651703	intron	intron	inversion/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000044524	ENSG00000283154	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262586	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
NR4A1	ASB15-AS1	+/+	-/+	12:52058700	7:123596027	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Ligand-binding_domain_of_nuclear_hormone_receptor(66%),Zinc_finger__C4_type_(two_domains)(100%)|	.	.	ENSG00000123358	ENSG00000230442	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	5:103482858	15:45462785	intron	intron	translocation/5'-5'	0	0	0	67	7	low	.	.	.	.	.	ENSG00000226926	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
TAS1R1	RNU6-1312P(86506),CRLF3P3(286792)	+/.	./.	1:6579310	2:83744348	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173662	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC073046.1	PDS5A	+/.	-/.	2:73985208	4:39875785	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000235499	ENSG00000121892	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GBP7	KIAA2012-AS1	-/.	-/.	1:89154926	2:202083777	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000213512	ENSG00000222035	.	.	downstream	downstream	mismatches(1)	.	.	.
FIG4	CAMK1D(37906),AL353586.1(4008)	+/+	./-	6:109738836	10:12873451	exon	intergenic	translocation	0	0	0	0	2	low	.	.	SacI_homology_domain(54%)|	.	.	ENSG00000112367	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	5:177876243	15:45463196	intron	intron	translocation/5'-5'	0	0	0	68	37	low	.	.	.	.	.	ENSG00000170089	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
FAF2	AL159163.1	+/+	-/-	5:176506922	6:166893131	CDS	intron	translocation	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|	.	.	ENSG00000113194	ENSG00000249141	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025475.2(132444),AC113347.1(52191)	MN1(31685),PITPNB(18228)	./.	./.	5:26617155	22:27833441	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092435.4(13660),AC097450.1(16881)	AC018754.1(73023),LINC02488(89677)	./.	./.	4:147043732	5:87572363	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004687.2	FP236383.3	-/.	+/.	17:58385559	21:8440593	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NRIP3	LINC01592	-/-	-/+	11:9003964	8:68940496	5'UTR	intron	translocation/5'-5'	0	0	0	0	30	low	.	.	.	.	.	ENSG00000175352	ENSG00000253658	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
AK6P1(1832025),ZNF970P(1493604)	DNAAF1	./.	+/.	12:36081983	16:84163161	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000154099	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX16	AP003390.1(4499),AP001994.1(77182)	-/.	./.	8:81842439	11:119744122	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
AC084759.3(20),AC084759.2(31977)	SPPL2B	./.	+/.	15:53914732	19:2338920	intergenic	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	.	ENSG00000005206	.	.	downstream	downstream	mismatches(1)	.	.	.
PDPN	FP671120.5(77670),FP671120.4(16244)	+/.	./.	1:13583780	21:8181376	5'UTR	intergenic	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000162493	.	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	2:237784949	15:45462427	intron	intron	translocation	0	0	0	67	12	low	.	.	.	.	.	ENSG00000124831	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
PRDM16	5_8S_rRNA(2101),FP236383.3(121609)	+/.	./.	1:3423343	21:8259034	intron	intergenic	translocation	0	0	0	0	5782	low	.	.	.	.	.	ENSG00000142611	.	.	.	upstream	downstream	duplicates(1),homopolymer(2)	.	.	.
LMNB1	RPS19	+/+	+/+	5:126776742	19:41869592	5'UTR	intron	translocation	0	0	0	18	0	low	.	.	|Ribosomal_protein_S19e(15%)	.	.	ENSG00000113368	ENSG00000105372	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC007405.1	AC239367.1(22405),AC239367.2(29056)	-/.	./.	2:170768859	X:51053762	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234350	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NGB	NGB	-/.	-/.	14:77269728	14:77269743	intron	intron	duplication/ITD	0	0	0	87	81	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	duplicates(6),low_entropy(16)	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	2:237784949	15:45462155	intron	intron	translocation	0	0	0	67	28	low	.	.	.	.	.	ENSG00000124831	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
DLG2	RPL7P45(385975),AL138954.1(209772)	-/.	./.	11:85484189	13:105201044	intron	intergenic	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025580.2	MACROD2	+/.	+/.	15:45462154	20:15209116	intron	intron	translocation/5'-5'	0	0	0	28	68	low	.	.	.	.	.	ENSG00000259354	ENSG00000172264	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC018467.1(70379),AC012506.1(61229)	AP001977.1	./.	+/.	2:23269435	11:121769978	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000286044	.	.	downstream	upstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	1:208413786	15:45462228	intergenic	intron	translocation	0	0	0	68	29	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
LINC01006	LINC01006	-/.	-/.	7:156582104	7:156582203	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000182648	ENSG00000182648	.	.	upstream	downstream	low_entropy(2)	.	.	.
FNDC3B	FNDC3B	+/.	+/.	3:172358955	3:172359004	intron	intron	duplication/ITD	0	0	0	141	128	low	.	.	.	.	.	ENSG00000075420	ENSG00000075420	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
LINC01558	KIAA1217	-/.	+/.	6:167796659	10:23941993	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146521	ENSG00000120549	.	.	downstream	upstream	mismatches(1)	.	.	.
TMC4(90),MBOAT7(72)	SIM2	./.	+/.	19:54173340	21:36720283	intergenic	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000159263	.	.	downstream	upstream	mismatches(1)	.	.	.
AL163195.1(11015),OR6S1(12690)	HYDIN	./.	-/.	14:20628006	16:71158143	intergenic	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	.	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LRAT	CLEC18A(3470),AC026468.1(7316)	+/.	./.	4:154635455	16:69967922	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000121207	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8442051	21:8443762	intron	intron	inversion/3'-3'	0	0	0	5962	8	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TATDN2	PIGS	+/.	-/.	3:10249513	17:28571019	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000087111	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	5:103482858	15:45462228	intron	intron	translocation/5'-5'	0	0	0	67	29	low	.	.	.	.	.	ENSG00000226926	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC079760.1	FP236383.3	-/.	+/.	7:91494892	21:8389581	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235450	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SREBF2-AS1	AC016304.1(54228),TMCO5A(376608)	-/-	./-	22:41833576	15:37545331	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
C1orf35	FP236383.3	-/-	+/+	1:228102036	21:8400417	exon	intron	translocation	0	0	0	10	13	low	.	.	Multiple_myeloma_tumor-associated(100%)|	.	.	ENSG00000143793	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
PPP2R2C	HBB	-/.	-/.	4:6371893	11:5225537	intron	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	ENSG00000074211	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
FABP6	5_8S_rRNA(2086),FP236383.3(121624)	+/.	./.	5:160238121	21:8259019	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000170231	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DSC3	HBB	-/-	-/-	18:30996898	11:5225537	CDS	3'UTR	translocation	0	0	0	0	91	low	.	.	Cadherin_domain(100%),Cadherin_prodomain_like(100%)|	.	.	ENSG00000134762	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749052	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
GALNT2	HBB	+/.	-/.	1:230187481	11:5225537	intron	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000143641	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02594	FP671120.4	+/.	+/.	17:43679885	21:8216865	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000267440	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SFN(3788),GPN2(7888)	KCNH8	./.	+/.	1:26868244	3:19308722	intergenic	intron	translocation	0	0	0	80	119	low	.	.	.	.	.	.	ENSG00000183960	.	.	upstream	downstream	low_entropy	.	.	.
AGAP1	AL355836.3	+/.	-/.	2:236018362	14:101193603	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000157985	ENSG00000288245	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
AC113352.1(75357),AC008568.1(28377)	A1CF	./.	-/.	5:121136310	10:50848274	intergenic	intron	translocation	0	0	0	0	34	low	.	.	.	.	.	.	ENSG00000148584	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396541	8:22396552	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
HBB	PARVB	-/.	+/.	11:5225537	22:44093533	3'UTR	intron	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000188677	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005229.5	PRKY	-/.	+/.	7:148605538	Y:7287970	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000287636	ENSG00000099725	.	.	upstream	downstream	mismatches(1)	.	.	.
ELMO1	ITGB1	-/.	-/.	7:37176424	10:32958687	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155849	ENSG00000150093	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45463198	intron	intron	translocation/5'-5'	0	0	0	154	37	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL355674.1(96155),RORB-AS1(4818)	AL355674.1(96168),RORB-AS1(4805)	./.	./.	9:74480733	9:74480746	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479810	10:104479825	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	duplicates(1),low_entropy(3),merge_adjacent	.	.	.
HIVEP2	FP671120.7(391),5_8S_rRNA(876)	-/.	./.	6:142946387	21:8255905	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DYNC2H1	FP671120.4	+/.	+/.	11:103278165	21:8214401	intron	intron	translocation	0	0	0	12	8	low	.	.	.	.	.	ENSG00000187240	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02128	5_8S_rRNA(3924),FP236383.3(119786)	+/.	./.	16:50895511	21:8260857	intron	intergenic	translocation	0	0	0	5	2	low	.	.	.	.	.	ENSG00000261241	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	6:93664696	6:93664795	intron	intron	duplication/ITD	0	0	0	22	15	low	.	.	.	.	.	ENSG00000287683	ENSG00000287683	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683468	15:81683477	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117444	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KLHL20	ARHGEF40	+/.	+/.	1:173733684	14:21071327	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000076321	ENSG00000165801	.	.	upstream	upstream	mismatches(1)	.	.	.
C16orf95	BICC1	-/-	+/-	16:87317152	10:58688001	CDS	intron	translocation/5'-5'	0	0	0	0	87	low	.	.	.	.	.	ENSG00000260456	ENSG00000122870	.	.	upstream	downstream	duplicates(1),mismatches(3)	.	.	.
AC108103.1(259991),C5orf17(1971)	PURA	./.	+/.	5:23949377	5:140113911	intergenic	intron	inversion	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000185129	.	.	downstream	downstream	homopolymer(1)	.	.	.
GXYLT2	RN7SL250P(33521),SOX17(3689)	+/.	./.	3:72893665	8:54454246	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172986	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SDK1	PACS1	+/.	+/.	7:3678607	11:66160715	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146555	ENSG00000175115	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	ATP1B4(7531),LAMP2(35368)	+/.	./.	11:47233102	X:120390780	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
CFAP58	AP003390.1(4503),AP001994.1(77178)	+/.	./.	10:104396370	11:119744126	intron	intergenic	translocation	0	0	0	558	3002	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
AC009154.1	CR392039.1(944),CR392039.3(8122)	+/.	./.	16:86665156	21:8988374	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000261161	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
H3-5(8699),RNU6-1069P(1961)	RNF43	./.	-/.	12:31800997	17:58385558	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000108375	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC012355.1(90722),ANKRD11P1(233425)	AC078980.1	./.	+/.	2:80960912	3:109700822	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000242029	.	.	downstream	upstream	mismatches(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	ANKRD11	./.	-/.	5:23949377	16:89489743	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000167522	.	.	downstream	upstream	homopolymer(1)	.	.	.
GPC3	GPC3	-/.	-/.	X:133661615	X:133661634	intron	intron	duplication/ITD	0	0	0	131	143	low	.	.	.	.	.	ENSG00000147257	ENSG00000147257	.	.	upstream	downstream	low_entropy(2)	.	.	.
DTNBP1(49300),ARPC3P5(222424)	AC107973.1	./.	+/.	6:15712358	11:29816652	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000254734	.	.	upstream	upstream	mismatches(1)	.	.	.
TATDN2	GSE1	+/.	+/.	3:10249513	16:85260114	CDS	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000157014	ENSG00000131149	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
DNAH5	FP236383.3	-/.	+/.	5:13930774	21:8441948	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000039139	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	FP236383.3	./.	+/.	8:17155256	21:8392866	intergenic	intron	translocation	0	0	0	0	43	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TFRC	CDH6	-/-	+/+	3:196081920	5:31259669	5'UTR	intron	translocation	0	0	0	4	2	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(100%)	.	.	ENSG00000072274	ENSG00000113361	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAX3	TDO2	-/.	+/.	2:222298765	4:155871605	5'UTR	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135903	ENSG00000151790	.	.	downstream	upstream	homopolymer(1)	.	.	.
NPAP1	5_8S_rRNA(2080),FP236383.3(121630)	+/+	./+	15:24675920	21:8259013	CDS	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000185823	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262573	intron	intron	duplication	0	0	0	2363	2136	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
PRUNE2	GPC5	-/.	+/.	9:76808399	13:91695714	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000106772	ENSG00000179399	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ENPP7P2	ENPP7P2	-/.	-/.	3:75466094	3:75466109	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000239959	ENSG00000239959	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL360175.1(7685),AL135908.1(58818)	AC009997.1(47927),NEDD4(32228)	./.	./.	6:50528789	15:55794694	intergenic	intergenic	translocation	0	0	0	2	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022826.2	TCF12	-/.	+/.	8:73820119	15:57216569	intron	intron	translocation/3'-3'	0	0	0	10	26	low	.	.	.	.	.	ENSG00000258677	ENSG00000140262	.	.	downstream	upstream	duplicates(9),mismatches(3)	.	.	.
ERCC8	FP671120.4	-/.	+/.	5:60944731	21:8214878	intron	intron	translocation/3'-3'	0	0	0	8	97	low	.	.	.	.	.	ENSG00000049167	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
AL356131.1(332830),MTRNR2L9(187)	FP236383.3	./.	+/.	6:61574141	21:8397351	intergenic	intron	translocation	0	0	0	65	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683464	15:81683473	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(2)	.	.	.
NMRK2(8877),DAPK3(7160)	AP001599.1	./.	+/.	19:3951293	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262482	6:42262491	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
XPC	LINC00470	-/.	-/.	3:14178231	18:1313975	intron	intron	translocation/3'-3'	0	0	0	11	1	low	.	.	.	.	.	ENSG00000154767	ENSG00000132204	.	.	downstream	downstream	mismatches(1)	.	.	.
AC098650.1	AC005229.5	+/.	-/.	3:28559019	7:148605538	intron	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000283563	ENSG00000287636	.	.	downstream	upstream	mismatches(1)	.	.	.
KIF1A	LINC01287(16430),PAXBP1P1(19014)	-/.	./.	2:240734131	7:153430415	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000130294	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749087	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
UBE2W	Z93403.1	-/.	+/.	8:73820119	X:42277880	intron	intron	translocation/3'-3'	0	0	0	10	31	low	.	.	.	.	.	ENSG00000104343	ENSG00000231772	.	.	downstream	upstream	duplicates(15),mismatches(10)	.	.	.
HTR1E(42950),AL138827.1(10527)	AC084337.2	./.	+/.	6:87059629	11:6496218	intergenic	intron	translocation	0	0	0	0	101	low	.	.	.	.	.	.	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16366),AC016134.1(9502)	./.	./.	15:41599884	15:41599955	intergenic	intergenic	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(30),low_entropy(16)	.	.	.
LINC02235	AP003390.1(4498),AP001994.1(77183)	+/.	./.	8:81842440	11:119744121	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
NEDD9	VPS53	-/.	-/.	6:11350829	17:669324	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000111859	ENSG00000141252	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
RPS18P6(199914),MTHFD2P1(282132)	HYDIN	./.	-/.	3:95372291	16:71158143	intergenic	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	.	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ASIC4-AS1	AL009177.1	-/.	+/.	2:219486801	6:14487262	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227432	ENSG00000286277	.	.	upstream	upstream	mismatches(1)	.	.	.
BBS9	FP236383.3	+/.	+/.	7:33425896	21:8445489	intron	intron	translocation/3'-3'	0	0	0	62	6	low	.	.	.	.	.	ENSG00000122507	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(5)	.	.	.
AC105252.1(292284),AC079380.1(3754)	AL009177.1	./.	+/.	4:133867492	6:14487259	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000286277	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1693),FP236383.3(122017)	FP236383.3	./.	+/.	21:8258626	21:8438953	intergenic	intron	inversion	0	0	0	44	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749087	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	5:103482858	15:45462428	intron	intron	translocation/5'-5'	0	0	0	67	12	low	.	.	.	.	.	ENSG00000226926	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
ABHD2	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	15:89133592	21:8258619	intron	intergenic	translocation	0	0	0	3	543	low	.	.	.	.	.	ENSG00000140526	.	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
NUDT3	FP236383.3	-/.	+/.	6:34315128	21:8444816	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000272325	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	ATP2B3	+/.	+/.	21:8397825	X:153545091	intron	intron	translocation/3'-3'	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000067842	.	.	upstream	upstream	mismatches(1)	.	.	.
AC013460.1(78042),RNU6ATAC37P(48255)	PCSK5	./.	+/.	2:7528586	9:76278850	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000099139	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS24P8(33048),TMEM158(31243)	AL353595.1	./.	+/.	3:45193223	9:11645416	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285784	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
NTN1	NTN1	+/.	+/.	17:9166157	17:9166167	intron	intron	duplication/ITD	0	0	0	289	233	low	.	.	.	.	.	ENSG00000065320	ENSG00000065320	.	.	upstream	downstream	duplicates(10),low_entropy(1),merge_adjacent	.	.	.
KRT19P4(10028),PBLD(11133)	AC026826.2(58120),RNU6-667P(467)	./.	./.	10:68271527	15:79816882	intergenic	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
EXOC4	AL023882.1	+/+	+/-	7:134007815	16:1045659	CDS	intergenic	translocation/5'-5'	0	0	0	0	0	low	.	.	Sec8_exocyst_complex_component_specific_domain(100%)|	.	.	ENSG00000131558	ENSG00000287855	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ERN2	ZNF665	-/.	-/.	16:23702061	19:53186708	intron	intron	translocation/3'-3'	0	0	0	8	1	low	.	.	.	.	.	ENSG00000134398	ENSG00000197497	.	.	downstream	downstream	mismatches(1)	.	.	.
GPR39	RN7SL478P(30116),LMTK2(78124)	+/.	./.	2:132557875	7:98028738	intron	intergenic	translocation	0	0	0	10	3	low	.	.	.	.	.	ENSG00000183840	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MYRIP	MT-RNR2	+/.	+/.	3:40252521	MT:1699	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000170011	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC025580.2	MACROD2	+/.	+/.	15:45462226	20:15209116	intron	intron	translocation/5'-5'	0	0	0	29	68	low	.	.	.	.	.	ENSG00000259354	ENSG00000172264	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
CASZ1	AL590824.1(382479),TENT5A(551771)	-/.	./.	1:10793941	6:80939668	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000130940	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGAP15	NPAS3	+/.	+/.	2:143307232	14:33799874	intron	CDS	translocation/3'-3'	0	0	0	0	102	low	.	.	.	.	.	ENSG00000075884	ENSG00000151322	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
KCNK1	AC006994.1	+/.	+/.	1:233615174	2:210230809	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135750	ENSG00000279317	.	.	downstream	upstream	mismatches(1)	.	.	.
AC114477.1(10760),RANP7(81328)	ZBTB38	./.	+/.	3:22822807	3:141434402	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000177311	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396393	10:104396402	intron	intron	duplication/ITD	0	0	0	561	558	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	low_entropy(4)	.	.	.
AF235103.3	FAM13C	-/.	-/.	8:144867653	10:59291607	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000286681	ENSG00000148541	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8441955	21:8441971	intron	intron	duplication/ITD	0	0	0	18	30	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479898	X:133661638	intron	intron	translocation/3'-3'	0	0	0	2216	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
GPR55	TRBV24OR9-2(9135),TRBV25OR9-2(3417)	-/.	./.	2:230948894	9:33658749	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135898	.	.	.	upstream	upstream	duplicates(4),mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479815	10:104479914	intron	intron	duplication/ITD	0	0	0	2200	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(8)	.	.	.
PHKG2	AC106886.2	+/.	+/.	16:30749000	16:30749090	intron	intron	duplication	0	0	0	188	221	low	.	.	.	.	.	ENSG00000156873	ENSG00000260899	.	.	upstream	downstream	small_insert_size	.	.	.
DNAH14	DNAH14	+/.	+/.	1:225078799	1:225078898	intron	intron	duplication/ITD	0	0	0	156	158	low	.	.	.	.	.	ENSG00000185842	ENSG00000185842	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023347.1(155224),YWHAZP2(58219)	COL25A1	./.	-/.	2:126499216	4:108946347	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188517	.	.	upstream	upstream	mismatches(1)	.	.	.
GALNS	FP671120.7(393),5_8S_rRNA(874)	-/.	./.	16:88834636	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141012	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
RNU6-393P(16786),TMEM130(34878)	AC025580.2	./.	+/.	7:98811610	15:45463187	intergenic	intron	translocation	0	0	0	1	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ADM	FP671120.4	+/+	+/+	11:10306618	21:8214795	CDS	intron	translocation	0	0	0	0	5263	low	.	.	Calcitonin_/_CGRP_/_IAPP_family(100%)|	.	.	ENSG00000148926	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC239859.3(831),AC239859.4(10145)	FP236383.3	./.	+/.	1:143451076	21:8441971	intergenic	intron	translocation	0	0	0	0	30	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916407	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
AL391832.3(16783),LINC01348(67892)	NPAS3	./.	+/.	1:234997587	14:33490812	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000151322	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02745	MSN(5968),NANOGP9(24842)	-/.	./.	11:42029389	X:65747899	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000255300	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4490),AP001994.1(77191)	+/.	./.	10:104396370	11:119744113	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
FP671120.4	CR392039.1(942),CR392039.3(8124)	+/.	./.	21:8214790	21:8988372	intron	intergenic	inversion	0	0	0	5263	48	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
MIR4300HG	FXNP1(22701),NRXN3(87394)	-/.	./.	11:82143179	14:78082979	intron	intergenic	translocation	0	0	0	1095	424	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	mismatches	.	.	.
HTR1E	FP236383.3	+/.	+/.	6:86956265	21:8441654	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000168830	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4496),AP001994.1(77185)	+/.	./.	10:104396370	11:119744119	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
AC079193.1(4368),ZDHHC2(1226)	CDH4	./.	+/.	8:17155256	20:61393342	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000179242	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785679	3:137274341	intron	intergenic	translocation	0	0	0	466	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
SLC4A10	AC016687.3	+/.	-/.	2:161763873	4:34005923	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000144290	ENSG00000250954	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2687),AC018688.1(57838)	5_8S_rRNA(2076),FP236383.3(121634)	./.	./.	20:30487763	21:8259009	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262470	6:42262483	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
FP671120.7	AC105252.1(292282),AC079380.1(3756)	-/-	./+	21:8254769	4:133867490	exon	intergenic	translocation	0	0	0	2	11	low	.	.	.	.	.	ENSG00000281383	.	.	.	upstream	upstream	mismatches(1)	.	.	.
APBA2	AC109136.1(151255),AC109462.1(59396)	+/.	./.	15:29078680	16:55200573	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000034053	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MTMR12	DENND5B	-/.	-/.	5:32271163	12:31410380	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000150712	ENSG00000170456	.	.	upstream	upstream	mismatches(1)	.	.	.
NME6	RAB3D	-/.	-/.	3:48301396	19:11335757	5'UTR	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172113	ENSG00000105514	.	.	downstream	downstream	mismatches(1)	.	.	.
ARID4B	FAM20C(23169),FOXL3(6229)	-/.	./.	1:234997587	7:283941	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000054267	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02225(171106),LINC02101(37363)	HS6ST2	./.	-/.	5:58070268	X:132708551	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000171004	.	.	downstream	downstream	mismatches(1)	.	.	.
MED27	NXNL1	-/.	-/.	9:131863536	19:17456610	intron	intron	translocation/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000160563	ENSG00000171773	.	.	downstream	downstream	mismatches(1)	.	.	.
HLA-DRB5(13016),RNU1-61P(6637)	AC106886.2	./.	+/.	6:32543303	16:30749091	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000260899	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016687.3	OR6C70	-/.	-/.	4:34005923	12:55469551	intron	CDS	translocation/3'-3'	0	0	0	10	2	low	.	.	.	.	.	ENSG00000250954	ENSG00000184954	.	.	downstream	downstream	mismatches(1)	.	.	.
WDR24	ARID1B	-/-	+/+	16:687715	6:156853565	CDS	intron	translocation	0	0	0	0	0	low	.	.	|ARID/BRIGHT_DNA_binding_domain(100%),SWI/SNF-like_complex_subunit_BAF250/Osa_(100%)	.	.	ENSG00000127580	ENSG00000049618	.	.	upstream	upstream	mismatches(1)	.	.	.
CNTN3	Z96074.1	-/.	+/.	3:74364752	X:137574881	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113805	ENSG00000283692	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC4A10	UBBP4	+/.	+/.	2:161763873	17:22095184	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144290	ENSG00000263563	.	.	downstream	upstream	mismatches(1)	.	.	.
AFAP1	CELF2	-/.	+/.	4:7841621	10:11070871	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000196526	ENSG00000048740	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916400	21:8437471	intron	intron	translocation/5'-5'	0	0	0	55	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
CCDC3	PALLD	-/-	+/+	10:12896736	4:168568975	3'UTR	intron	translocation	0	0	0	0	2	low	.	.	|Immunoglobulin_I-set_domain(92%)	.	.	ENSG00000151468	ENSG00000129116	.	.	upstream	upstream	mismatches(1)	.	.	.
KHK	UBE2D3	+/.	-/.	2:27094050	4:102811284	intron	exon	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000138030	ENSG00000109332	.	.	upstream	downstream	mismatches(1)	.	.	.
AC106886.2	5_8S_rRNA(475),FP236383.3(123235)	+/.	./.	16:30749090	21:8257408	intron	intergenic	translocation	0	0	0	221	0	low	.	.	.	.	.	ENSG00000260899	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FARS2	FP565260.4	+/.	+/.	6:5782068	21:5012499	intron	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	ENSG00000145982	ENSG00000279493	.	.	downstream	upstream	mismatches(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	5:175967559	15:45462783	intron	intron	translocation/5'-5'	0	0	0	67	7	low	.	.	.	.	.	ENSG00000051596	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC087311.1(131560),SYT10(248924)	AC140658.3(4036),ARHGAP23P1(27915)	./.	./.	12:33125314	16:33879504	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DLGAP2	FP236383.3	+/.	+/.	8:1089848	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000198010	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
CAMK1D	AC011503.1(42919),RNA5-8SP4(3404)	+/.	./.	10:12746140	19:24000954	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000183049	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GPR19	SBNO2	-/.	-/.	12:12676727	19:1108540	intron	CDS	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000183150	ENSG00000064932	.	.	downstream	downstream	mismatches(1)	.	.	.
BRK1P2(18860),LINC00380(44440)	MT-RNR2	./.	+/.	13:91042814	MT:2225	intergenic	exon	translocation	0	0	0	1	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(2)	.	.	.
AL139280.2(58651),AL356433.1(40717)	Z98752.3	./.	+/.	10:3356788	20:43556450	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000277611	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749081	intron	intron	translocation	0	0	0	31	221	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
UBBP4	MSN(5967),NANOGP9(24843)	+/.	./.	17:22095184	X:65747898	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000263563	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DISC1FP1	DISC1FP1	+/.	+/.	11:90728493	11:90728533	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000261645	ENSG00000261645	.	.	upstream	downstream	small_insert_size	.	.	.
CHRNB4	LSM14B	-/.	+/.	15:78672957	20:62131771	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117971	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
LPP	UBBP4	+/.	+/.	3:188587619	17:22095186	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145012	ENSG00000263563	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005229.5	PRKX	-/.	-/.	7:148605538	X:3702477	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000287636	ENSG00000183943	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK13	MT-RNR2	+/+	+/+	7:39951169	MT:1791	CDS	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000065883	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	OLIG3(2165),BTF3L4P3(47338)	./.	./.	2:53114408	6:137496559	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PAXBP1(86),C21orf62-AS1(222)	PAXBP1(95),C21orf62-AS1(213)	./.	./.	21:32771878	21:32771887	intergenic	intergenic	duplication/ITD	0	0	0	494	445	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
OR6D1P(28871),OR13A1(10175)	AC008050.1	./.	-/.	10:45292123	14:76611480	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000259124	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC084337.2	LINC02550	+/.	-/.	11:6496218	11:111099116	intron	intron	duplication/3'-3'	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	ENSG00000271584	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC115100.1(199250),AC090506.1(99952)	AC115100.1(199263),AC090506.1(99939)	./.	./.	18:30613323	18:30613336	intergenic	intergenic	duplication/ITD	0	0	0	8	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RNU6-1312P(217523),CRLF3P3(155775)	PTPRD	./.	-/.	2:83875365	9:8770683	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000153707	.	.	downstream	downstream	mismatches(1)	.	.	.
AF279873.3	HIPK3	+/.	+/.	8:33792866	11:33258157	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000253642	ENSG00000110422	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
PSCA(9242),LY6K(8144)	AC233702.2(14060),AC233702.1(6247)	./.	./.	8:142691967	17:21608240	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SKA3	MT-RNR1	-/.	+/.	13:21155652	MT:1503	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000165480	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
LINC01381(6971),DNMT3A(11682)	LIN52(32938),VSX2(5276)	./.	./.	2:25216173	14:74234173	intergenic	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(3)	.	.	.
CCM2L	FP236383.3	+/+	+/+	20:32014991	21:8397817	CDS	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000101331	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC007491.1(133740),CRNDE(53787)	DNMT3B	./.	+/.	16:54791402	20:32806060	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000088305	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC008837.2(60704),CRLF3P2(292294)	GNAI1	./.	+/.	5:99656001	7:79952948	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000127955	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC4A10	AC233702.2(14060),AC233702.1(6247)	+/.	./.	2:161763873	17:21608240	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144290	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FAT1	CNTFR(1375),RPP25L(18971)	-/.	./.	4:186598220	9:34591515	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000083857	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP326651.1(1970),Y_RNA(175042)	DDB2	./.	+/.	9:65398342	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
APBB1	TBC1D3P4(8245),LINC02076(1953)	-/-	./-	11:6410697	17:18409206	CDS	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000166313	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZAR1	AL355499.1	+/+	+/+	4:48490359	6:8129400	CDS	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000182223	ENSG00000232234	.	.	downstream	upstream	mismatches(1)	.	.	.
AC012409.2	5_8S_rRNA(2693),FP236383.3(121017)	+/.	./.	15:96174456	21:8259626	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000275443	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MRPS36P5(24794),LINC02461(76135)	5_8S_rRNA(2093),FP236383.3(121617)	./.	./.	12:43079180	21:8259026	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNIP1	AC012060.1(92676),LINC02248(36443)	+/.	./.	5:170676145	15:26358594	intron	intergenic	translocation	0	0	0	2	71	low	.	.	.	.	.	ENSG00000182132	.	.	.	downstream	downstream	mismatches(2)	.	.	.
SKI	TENM2	+/.	+/.	1:2229116	5:167360943	CDS	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000157933	ENSG00000145934	.	.	upstream	upstream	mismatches(1)	.	.	.
ACTR2	RAMP3(65696),AC073968.2(16683)	+/.	./.	2:65267358	7:45251998	intron	intergenic	translocation	0	0	0	0	87	low	.	.	.	.	.	ENSG00000138071	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PSCA(9243),LY6K(8143)	LINC02745	./.	-/.	8:142691968	11:42029389	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000255300	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01885	CNTNAP3	-/.	-/.	2:107637876	9:39158316	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000237880	ENSG00000106714	.	.	upstream	downstream	mismatches(1)	.	.	.
AL603839.4(3075),ZFP69(156)	AL358335.2	./.	-/.	1:40477134	14:48480992	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000258751	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP528(395027),DEFB115(46363)	AL133335.1(198311),DOK5(7740)	./.	./.	20:31211301	20:54467853	intergenic	intergenic	deletion	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
THEMIS	AMOTL1	-/.	+/.	6:127735531	11:94724191	intron	intron	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	ENSG00000166025	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MSH3	FAM224B(27000),CLUHP1(14505)	+/.	./.	5:80854005	Y:17606754	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PLSCR5(28163),AC092957.1(275306)	MTRNR2L8(254),RNF141(2233)	./.	./.	3:146634379	11:10509440	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAH14	AP001823.1(3434),ELMOD1(754)	+/.	./.	1:225078903	11:107590337	intron	intergenic	translocation	0	0	0	144	1909	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	upstream	mismatches	.	.	.
AC079193.1(4368),ZDHHC2(1226)	FP236383.3	./.	+/.	8:17155256	21:8437076	intergenic	intron	translocation	0	0	0	0	55	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MYT1L(85624),AC018685.2(220890)	COL6A1	./.	+/.	2:2417288	21:45986696	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000142156	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC068759.1	AMOTL1	+/.	+/.	3:173217193	11:94740524	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000237473	ENSG00000166025	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	AF241726.1	+/.	+/.	21:8438949	X:38465343	intron	intron	translocation	0	0	0	139	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000250349	.	.	upstream	downstream	homopolymer(1)	.	.	.
CREBRF	UBE2W	+/.	-/.	5:173056549	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164463	ENSG00000104343	.	.	downstream	upstream	duplicates(9),mismatches(2)	.	.	.
AC006504.5	BPY2B	+/.	+/.	19:27961838	Y:24625532	intron	intron	translocation/3'-3'	0	0	0	4	5	low	.	.	.	.	.	ENSG00000267575	ENSG00000183795	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02225(171108),LINC02101(37361)	AC036214.1	./.	-/.	5:58070270	8:79785746	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000249328	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
KCNH8	KCNH8	+/.	+/.	3:19308651	3:19308666	intron	intron	duplication/ITD	0	0	0	119	119	low	.	.	.	.	.	ENSG00000183960	ENSG00000183960	.	.	upstream	downstream	duplicates(73),low_entropy(17)	.	.	.
GRID1	FAM156B(3179),AC234031.1(14217)	-/.	./.	10:86105077	X:52911739	intron	intergenic	translocation	1	0	0	0	0	low	.	.	.	.	.	ENSG00000182771	.	.	.	downstream	downstream	duplicates(1),min_support	.	.	.
TRIM51HP	LINC01484	-/-	-/+	11:55297875	5:173742753	exon	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000166007	ENSG00000253686	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AC023034.1	+/.	+/.	10:104396370	15:81565290	intron	intron	translocation/3'-3'	0	0	0	558	14	low	.	.	.	.	.	ENSG00000120051	ENSG00000259594	.	.	upstream	upstream	low_entropy	.	.	.
AL359636.2	FP236383.3	+/.	+/.	9:122558263	21:8401256	intron	intron	translocation	0	0	0	15	15	low	.	.	.	.	.	ENSG00000234156	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
U3(104497),GPC1(41723)	AL773573.1(34248),LINC00323(69883)	./.	./.	2:240393940	21:41071610	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC39A11	FP236383.3	-/.	+/.	17:72884574	21:8444816	intron	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000133195	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4488),AP001994.1(77193)	GPC3	./.	-/.	11:119744111	X:133661640	intergenic	intron	translocation	0	0	0	3583	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
H3C10	AC022826.2	+/.	-/.	6:27810927	8:73820102	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	ENSG00000258677	.	.	upstream	upstream	duplicates(5)	.	.	.
RPS10-NUDT3	SLCO5A1	-/.	-/.	6:34315128	8:69690369	intron	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	ENSG00000270800	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
AC094105.2(147958),LINC01377(61922)	RGMB-AS1	./.	-/.	5:3115913	5:98771438	intergenic	intron	deletion	0	0	0	0	26	low	.	.	.	.	.	.	ENSG00000246763	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02159(139066),GABRB2(210737)	DDB2	./.	+/.	5:161077692	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
AC006015.1(29578),AC079355.1(33195)	NCS1	./.	+/.	7:63666195	9:130173133	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000107130	.	.	upstream	upstream	mismatches(1)	.	.	.
AC114763.1	FP236383.3	-/.	+/.	2:138480624	21:8397817	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000228043	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
GALNS	FP236383.3	-/.	+/.	16:88834636	21:8438949	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000141012	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
DTX4	FP236383.3	+/+	+/+	11:59195361	21:8442054	CDS	intron	translocation	0	0	0	4	5962	low	.	.	Deltex_C-terminal_domain(26%),WWE_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|	.	.	ENSG00000110042	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
WDR81	FP671120.4	+/.	+/.	17:1724797	21:8211701	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167716	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1987),FP236383.3(121723)	5_8S_rRNA(2003),FP236383.3(121707)	./.	./.	21:8258920	21:8258936	intergenic	intergenic	duplication/ITD	0	0	0	31	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
NUDT3	SLCO5A1	-/.	-/.	6:34315128	8:69690369	intron	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	ENSG00000272325	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
WLS	GPM6B	-/-	-/+	1:68231629	X:13840676	5'UTR	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000116729	ENSG00000046653	.	.	upstream	upstream	mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	SLC10A3	./.	-/.	8:37342743	X:154487703	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000126903	.	.	upstream	downstream	mismatches(1)	.	.	.
CDK20	FP236383.3	-/.	+/.	9:87972895	21:8400584	intron	intron	translocation/3'-3'	0	0	0	6	7	low	.	.	.	.	.	ENSG00000156345	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
SFRP4(58883),STARD3NL(93667)	AL162493.1	./.	+/.	7:38084578	13:84190481	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000288016	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683468	15:81683477	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
DHFR	CEP152	-/.	-/.	5:80651216	15:48806205	intron	intron	translocation/3'-3'	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000103995	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
NRIP3	RTEL1-TNFRSF6B	-/-	+/-	11:9003964	20:63683594	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000026036	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683462	15:81683471	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AC091804.1(832267),ALCAM(31376)	AC046168.2	./.	+/.	3:105335533	15:77587773	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000259420	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
PURPL(424058),AC093300.1(292307)	AC019117.1	./.	-/.	5:27921052	7:17532330	intergenic	intron	translocation	0	0	0	1	5	low	.	.	.	.	.	.	ENSG00000236039	.	.	downstream	downstream	mismatches(1)	.	.	.
GRIK4	PHKG2	+/.	+/.	11:120708312	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000149403	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RC3H1	SNX1	-/.	+/.	1:173991581	15:64095912	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000135870	ENSG00000028528	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR212(624),HIC1(3150)	BANF2(94733),AL035045.1(56759)	./.	./.	17:2051004	20:17830604	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
NTRK1	AC103764.1(47896),RPL23AP56(49032)	+/.	./.	1:156849597	8:134929795	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000198400	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	AP001599.1	-/.	+/.	11:85484194	21:26914103	intron	intron	translocation/5'-5'	0	0	0	279	167	low	.	.	.	.	.	ENSG00000150672	ENSG00000223563	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
ZNF707	AC004687.2	+/.	-/.	8:143684558	17:58385557	exon	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000181135	ENSG00000285897	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MLYCD	DACT2(25892),AL138918.1(29028)	+/+	./+	16:83922180	6:168345669	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02469	RPL10L(115581),MDGA2(72267)	+/.	./.	4:79684911	14:46767362	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000248408	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC128676.1(537858),RNU6-417P(197927)	FP671120.4	./.	+/.	7:62813536	21:8217546	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02612	RAB40B(13392),AC024361.2(1818)	+/.	./.	2:150617538	17:82712090	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SREBF2-AS1	LINC01138	-/-	-/-	22:41833576	1:148351992	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	ENSG00000274020	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ARHGEF26-AS1	KDM4B	-/-	+/+	3:154121333	19:5090393	exon	intron	translocation	0	0	0	0	9	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000243069	ENSG00000127663	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
INPP4B	LINC00293	-/.	+/.	4:142713193	8:46829755	intron	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	ENSG00000253314	.	.	downstream	downstream	mismatches(1)	.	.	.
Y_RNA(92915),RNA5SP103(1239)	RUFY4(18122),CXCR2(16586)	./.	./.	2:128443842	2:218108703	intergenic	intergenic	inversion	0	0	0	7	193	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),homopolymer(2)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479894	X:133661638	intron	intron	translocation/3'-3'	0	0	0	2216	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117382	10:113117391	intron	intron	duplication/ITD	0	0	0	307	304	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(1)	.	.	.
DHFR	DLEU7	-/.	-/.	5:80651215	13:50533058	intron	intron	translocation	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000186047	.	.	downstream	upstream	duplicates(6),mismatches(1)	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262574	10:104396370	intron	intron	translocation/3'-3'	0	0	0	2136	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
RNF43	AC004973.1(5483),SLC25A43(258)	-/.	./.	17:58385558	X:119399078	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RHOT2	AL731768.1(245335),SRIP2(139747)	+/.	./.	16:671707	X:89227688	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140983	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
RGMB-AS1	THOC3(1121),AC139491.3(792)	-/.	./.	5:98771438	5:176035801	intron	intergenic	duplication	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392823	1:90392832	intron	intron	duplication/ITD	0	0	0	311	308	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
PCGF5	RBFOX3	+/.	-/.	10:91163170	17:79342949	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000180628	ENSG00000167281	.	.	downstream	upstream	homopolymer(1)	.	.	.
RGMB	THOC3(1121),AC139491.3(792)	+/.	./.	5:98771438	5:176035801	intron	intergenic	duplication	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ABCF3(34892),VWA5B2(1525)	RGMB	./.	+/.	3:184228904	5:98771438	intergenic	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	.	ENSG00000174136	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ADGRG7	FP236383.3	+/.	+/.	3:100673210	21:8441656	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000144820	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RGMB	DPP9(27833),MIR7-3HG(16525)	+/.	./.	5:98771454	19:4752506	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NRIP3	NOS2	-/-	-/+	11:9003964	17:27777086	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000007171	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SL271P(106923),LINC00877(9198)	AC008035.1	./.	+/.	3:71934394	12:46639334	intergenic	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000272369	.	.	downstream	upstream	duplicates(5),mismatches(2)	.	.	.
AC074131.1(42657),LINC02161(68513)	LINC00189	./.	+/.	5:89512696	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	NAA38	+/.	-/.	11:47233103	17:7867198	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000183011	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
GXYLT2	MAP1B	+/.	+/.	3:72893664	5:72107392	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000172986	ENSG00000131711	.	.	upstream	upstream	mismatches(1)	.	.	.
MTHFD1	FP236383.3	+/.	+/.	14:64410913	21:8437076	intron	intron	translocation	0	0	0	11	55	low	.	.	.	.	.	ENSG00000100714	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	ARHGAP19-SLIT1	./.	-/.	2:218108703	10:97179807	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000269891	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	AC114321.1(205469),AC026403.1(21397)	./.	./.	2:128443843	5:166360908	intergenic	intergenic	translocation	0	0	0	7	10	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MORN1	5_8S_rRNA(2076),FP236383.3(121634)	-/.	./.	1:2342558	21:8259009	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000116151	.	.	.	upstream	upstream	mismatches	.	.	.
MIB2	WDR13	+/+	+/+	1:1625669	X:48597824	exon	5'UTR	translocation	0	0	0	3	0	low	.	.	Mib_herc2(100%),Mind_bomb_SH3_repeat_domain(49%),Zinc_finger__ZZ_type(100%)|WD_domain__G-beta_repeat(100%)	.	.	ENSG00000197530	ENSG00000101940	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47233103	21:8439285	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	downstream	upstream	duplicates(12),mismatches(2)	.	.	.
MIR548AP(123825),AC104229.1(9162)	IDH2	./.	-/.	15:85949555	15:90102335	intergenic	CDS	duplication	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000182054	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NOS3	AP001599.1	+/.	+/.	7:150995588	21:26914102	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000164867	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
NEK6	5_8S_rRNA(2077),FP236383.3(121633)	+/.	./.	9:124343201	21:8259010	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000119408	.	.	.	upstream	upstream	mismatches	.	.	.
PRDM12	AC079052.1	+/.	+/.	9:130681890	18:41407872	3'UTR	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000130711	ENSG00000286328	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
PDS5A	SBNO2	-/.	-/.	4:39875783	19:1119477	intron	intron	translocation	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	ENSG00000064932	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF701	ZNF701	+/.	+/.	19:52561159	19:52561215	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000167562	ENSG00000167562	.	.	upstream	downstream	low_entropy(1)	.	.	.
DNAH9	AC114277.1(97006),RNA5SP181(41180)	+/+	./+	17:11784443	5:36444163	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	AAA+_lid_domain(5%),Dynein_heavy_chain_AAA_lid_domain(35%),Dynein_heavy_chain__N-terminal_region_1(100%),Dynein_heavy_chain__N-terminal_region_2(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),P-loop_containing_dynein_motor_region(100%)|	.	.	ENSG00000007174	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
SLC5A11	BCL2L1(14599),TPX2(683)	+/.	./.	16:24883973	20:31738588	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000158865	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FAM86B3P(53798),PRAG1(19073)	BPY2	./.	+/.	8:8298663	Y:22991791	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000183753	.	.	upstream	upstream	mismatches(1)	.	.	.
DDTP1	RPS6KA2	-/-	-/-	3:38515755	6:166727447	exon	intron	translocation	0	0	0	2	0	low	.	.	|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000230683	ENSG00000071242	.	.	upstream	downstream	mismatches(1)	.	.	.
AC126121.3	ANK2	+/.	+/.	3:59626658	4:113275782	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000243295	ENSG00000145362	.	.	upstream	upstream	mismatches(1)	.	.	.
HEY2	FIGNL2	+/.	-/.	6:125747933	12:51846742	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135547	ENSG00000261308	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6ATAC15P(10928),RPSAP29(119393)	AC004882.1	./.	-/.	3:110562893	22:29711529	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000232396	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
RUFY4(18122),CXCR2(16586)	ANXA11	./.	-/.	2:218108703	10:80168259	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000122359	.	.	downstream	downstream	duplicates(3),homopolymer(2)	.	.	.
YWHAZ	FP236383.3	-/.	+/.	8:100917286	21:8442055	3'UTR	intron	translocation/3'-3'	0	0	0	5	5962	low	.	.	.	.	.	ENSG00000164924	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GDF11	DDB2	+/+	+/-	12:55750774	11:47233105	3'UTR	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000135414	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	WDR81	./.	+/.	5:23949377	17:1724796	intergenic	5'UTR	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000167716	.	.	downstream	upstream	homopolymer(2)	.	.	.
C16orf95	MYT1L(85626),AC018685.2(220888)	-/-	./-	16:87317154	2:2417290	CDS	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025580.2	MACROD2	+/.	+/.	15:45462426	20:15209116	intron	intron	translocation/5'-5'	0	0	0	12	68	low	.	.	.	.	.	ENSG00000259354	ENSG00000172264	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC073332.1	MYO18A(49),AC005412.1(16624)	-/.	./.	7:17102798	17:29180447	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000237773	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MMP23B	RUFY4(18117),CXCR2(16591)	+/.	./.	1:1634420	2:218108698	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000189409	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	10:44886357	10:44886366	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000224812	ENSG00000224812	.	.	upstream	downstream	low_entropy(1)	.	.	.
C7orf33	AC087888.1(50124),AC093027.1(171596)	+/.	./.	7:148605538	12:84500002	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000170279	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC090578.1	RNU6-81P(11763),PPP1R2P10(15347)	+/.	./.	8:88485094	13:63795667	intron	intergenic	translocation	0	0	0	5	2	low	.	.	.	.	.	ENSG00000253553	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MSANTD3-TMEFF1	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	9:100456466	21:8259024	intron	intergenic	translocation	0	0	0	2	6	low	.	.	.	.	.	ENSG00000251349	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX29	FAM47C(22993),FTHL18(8366)	+/.	./.	16:12282235	X:37034657	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000048471	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC108073.3	FP236383.3	-/.	+/.	4:187943695	21:8400582	exon	intron	translocation/3'-3'	0	0	0	13	7	low	.	.	.	.	.	ENSG00000286641	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FNBP4	MT-RNR2	-/.	+/.	11:47739344	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000109920	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01381(6973),DNMT3A(11680)	AC097374.1	./.	-/.	2:25216175	2:94903279	intergenic	intron	inversion	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000259848	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MT-RNR2	MT-RNR2	+/.	+/.	MT:1964	MT:2225	exon	exon	inversion/3'-3'	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(3)	.	.	.
GRPEL2P1(60317),AL162573.1(102698)	GRPEL2P1(60332),AL162573.1(102683)	./.	./.	13:89039102	13:89039117	intergenic	intergenic	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	4:94902250	4:94902263	intron	intron	duplication/ITD	0	0	0	345	345	low	.	.	.	.	.	ENSG00000138696	ENSG00000138696	.	.	upstream	downstream	duplicates(294),low_entropy(24)	.	.	.
AC108073.3	FP236383.3	-/.	+/.	4:187943695	21:8444814	exon	intron	translocation/3'-3'	0	0	0	13	62	low	.	.	.	.	.	ENSG00000286641	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RN7SL423P(28136),AC009313.1(142620)	ALOX15(16236),PELP1(11244)	./.	./.	2:160905986	17:4658530	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
CADM2	AC079760.2	+/.	+/.	3:85836872	7:91493507	intron	exon	translocation/3'-3'	0	0	0	19	0	low	.	.	.	.	.	ENSG00000175161	ENSG00000243144	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
LINC01720	SLC35F3	+/.	+/.	1:190659718	1:234066086	intron	intron	deletion	0	0	0	1	0	low	.	.	.	.	.	ENSG00000231175	ENSG00000183780	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC178	FP671120.4	-/.	+/.	18:32975568	21:8217541	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000166960	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SEPTIN8	AC004852.2(314381),GAPDHP68(110740)	-/.	./.	5:132788158	7:9504238	intron	intergenic	translocation	0	0	0	26	4	low	.	.	.	.	.	ENSG00000164402	.	.	.	upstream	upstream	low_entropy	.	.	.
TENM2	LINC00866	+/.	-/.	5:167973715	10:97837187	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145934	ENSG00000227356	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	FP671120.3(463),FP671120.7(3980)	./.	./.	8:17155256	21:8250612	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01885	CNTNAP3B	-/.	-/.	2:107637876	9:41978602	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000237880	ENSG00000154529	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4498),AP001994.1(77183)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744121	14:78082961	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC139365.1(221268),AC118650.1(2132945)	FP236383.3	./.	+/.	8:43895859	21:8397833	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	5:103482858	15:45463198	intron	intron	translocation/5'-5'	0	0	0	67	37	low	.	.	.	.	.	ENSG00000226926	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
MIR1302-7(98668),AC104417.1(83110)	CFAP58	./.	+/.	8:141884981	10:104401138	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000120051	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092506.1(601475),AL591888.1(170253)	FP236383.3	./.	+/.	1:104828153	21:8441656	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96617460	21:8441571	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RGPD5	PRR12	+/.	+/.	2:109794609	19:49614693	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000015568	ENSG00000126464	.	.	upstream	downstream	homopolymer(1)	.	.	.
LINC02613	FAT1(23081),AC108865.1(141166)	-/.	./.	2:38515933	4:186749803	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231367	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004704.1	CRADD	-/.	+/.	4:111848885	12:93846255	intron	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000249815	ENSG00000169372	.	.	downstream	downstream	mismatches(2)	.	.	.
FP236383.3	Z99497.2(139327),AL589669.1(77252)	+/.	./.	21:8441657	X:147103812	intron	intergenic	translocation	0	0	0	546	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RGS22	RBM38(6607),AL109955.1(26802)	-/.	./.	8:100083273	20:57415940	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132554	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C5orf66	ZBTB45	+/.	-/.	5:135308533	19:58519967	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000224186	ENSG00000119574	.	.	upstream	upstream	mismatches(1)	.	.	.
MLLT10(12025),DNAJC1(893)	AC027369.6	./.	+/.	10:21755655	11:48882671	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000255551	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02235	FP671120.4	+/.	+/.	8:81842488	21:8206534	intron	intron	translocation/3'-3'	0	0	0	75	9	low	.	.	.	.	.	ENSG00000254689	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SGMS1-AS1	FP671120.4	+/.	+/.	10:50624032	21:8214782	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000226200	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
HTR3A(42047),ZBTB16(27351)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	11:114032360	21:8259024	intergenic	intergenic	translocation	0	0	0	5	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	AL358053.1(206662),AL591644.1(221019)	./.	./.	3:137274346	9:1756765	intergenic	intergenic	translocation	0	0	0	71	8	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463097	15:45463195	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(20),low_entropy(2)	.	.	.
ATP2B2	PABPC3	-/.	+/.	3:10690295	13:24940989	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000157087	ENSG00000151846	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	UBE2L3	+/.	+/.	21:8400582	22:21613410	intron	intron	translocation	0	0	0	7	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000185651	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IGHVIII-38-1(821),IGHV4-39(2591)	IGHVIII-38-1(904),IGHV4-39(2508)	./.	./.	14:106419120	14:106419203	intergenic	intergenic	duplication/ITD	0	0	0	162	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	Y_RNA(5797),MAP7D2(15757)	+/.	./.	21:8399905	X:19990956	intron	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	UBE2L3	+/.	+/.	21:8217544	22:21613410	intron	intron	translocation	0	0	0	25	2	low	.	.	.	.	.	ENSG00000278996	ENSG00000185651	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SIL1	NSMAF(94883),TOX(50676)	-/.	./.	5:139105650	8:58754736	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120725	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AL137009.1	AC019117.1	+/.	-/.	6:118987980	7:17532328	intron	intron	translocation/3'-3'	0	0	0	2	5	low	.	.	.	.	.	ENSG00000253194	ENSG00000236039	.	.	upstream	downstream	mismatches(1)	.	.	.
CHRNB4	FP671120.4	-/.	+/.	15:78632255	21:8206534	intron	intron	translocation/3'-3'	0	0	0	9	9	low	.	.	.	.	.	ENSG00000117971	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
BRINP3	RGMB	-/.	+/.	1:190147967	5:98771438	intron	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000162670	ENSG00000174136	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SETD3	BCL2	-/.	-/.	14:99420975	18:63318702	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183576	ENSG00000171791	.	.	downstream	downstream	homopolymer(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	10:80511718	10:80511727	intron	intron	duplication/ITD	0	0	0	17	11	low	.	.	.	.	.	ENSG00000108219	ENSG00000108219	.	.	upstream	downstream	duplicates(4)	.	.	.
TRBV24OR9-2(9132),TRBV25OR9-2(3420)	SLC47A2	./.	-/.	9:33658746	17:19699601	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000180638	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
AC000120.3	SLCO5A1	-/.	-/.	7:92234877	8:69690369	CDS	intron	translocation/3'-3'	0	0	0	0	53	low	.	.	.	.	.	ENSG00000285953	ENSG00000137571	.	.	downstream	downstream	mismatches(1)	.	.	.
SQSTM1P1(123822),AL445668.1(8613)	LAMA3	./.	+/.	13:62530738	18:23756906	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000053747	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
GNG12-AS1	RN7SKP263(6593),AC123567.1(124437)	+/.	./.	1:67896729	12:94015640	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000232284	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01885	CNTNAP3P2	-/.	+/.	2:107637876	9:67208833	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000237880	ENSG00000276386	.	.	upstream	upstream	mismatches(1)	.	.	.
ADGRD2	FP236383.3	+/.	+/.	9:124473541	21:8442059	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000180264	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC019117.1	LIPJ	-/.	+/.	7:17532328	10:88602547	intron	intron	translocation	0	0	0	5	2	low	.	.	.	.	.	ENSG00000236039	ENSG00000204022	.	.	downstream	downstream	mismatches(1)	.	.	.
MEGF6	BX284656.1(14693),AL008720.1(96981)	-/.	./.	1:3505496	22:48157922	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000162591	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	Metazoa_SRP(19036),UBE2Q2P12(4297)	./.	./.	5:175198325	15:84487183	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ARHGAP24	THSD4	+/.	+/.	4:86000578	15:71205177	CDS	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000138639	ENSG00000187720	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	21:8212343	21:8259021	intron	intergenic	deletion/read-through	0	0	0	28	6	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	duplicates(1),mismatches(6)	.	.	.
FAF2	AC000120.3	+/+	-/-	5:176506922	7:92135196	CDS	intron	translocation	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|	.	.	ENSG00000113194	ENSG00000285953	.	.	downstream	downstream	mismatches(1)	.	.	.
ARPC4	MIR663AHG	+/+	-/-	3:9792515	20:26208397	5'UTR	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000241553	ENSG00000227195	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(913),IGHV4-39(2499)	./.	./.	14:106419121	14:106419212	intergenic	intergenic	duplication/ITD	0	0	0	192	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MFF-DT	GDA	-/-	+/+	2:227268528	9:72149977	exon	intron	translocation	0	0	0	0	0	low	.	.	|Amidohydrolase_family(100%)	.	.	ENSG00000236432	ENSG00000119125	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
DDB2	AC068722.1(19668),AC068714.1(148456)	+/.	./.	11:47233105	15:45950737	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117366	10:113117458	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479900	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
AC105148.1(158330),AC116634.1(46057)	FP671120.4	./.	+/.	4:167900617	21:8215396	intergenic	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
UBE2W	MT-RNR2	-/.	+/.	8:73820102	MT:1698	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000104343	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749069	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC00682	AC108103.1(259991),C5orf17(1971)	-/.	./.	4:41881849	5:23949377	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000245870	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
ACMSD	ACMSD	+/.	+/.	2:134845512	2:134845525	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000153086	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP000255.1(48529),TPT1P1(55405)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784936	21:31785031	intergenic	intergenic	duplication/ITD	0	0	0	220	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
SEPTIN8	FBN3(10841),AC022146.1(12839)	-/.	./.	5:132788158	19:8160433	intron	intergenic	translocation	0	0	0	26	6	low	.	.	.	.	.	ENSG00000164402	.	.	.	upstream	upstream	low_entropy	.	.	.
U3(104497),GPC1(41723)	OPCML	./.	-/.	2:240393940	11:132846099	intergenic	intron	translocation	0	0	0	357	6	low	.	.	.	.	.	.	ENSG00000183715	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
HBB	RPH3AL	-/.	-/.	11:5225537	17:234663	3'UTR	intron	translocation	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000181031	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NRIP3	GTF2IRD1P1	-/-	-/-	11:9003964	7:66824572	5'UTR	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000175352	ENSG00000230583	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
BANF2(94731),AL035045.1(56761)	FP671120.4	./.	+/.	20:17830602	21:8217327	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
CCNT2-AS1	ACMSD	-/.	+/.	2:134845512	2:134845525	intron	intron	duplication/5'-5'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000153086	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARID4B	AC104041.1	-/.	-/.	1:235327619	15:81953266	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000259692	.	.	upstream	upstream	mismatches(1)	.	.	.
HSP90AA6P(18840),LINC02382(118179)	SNX29	./.	+/.	4:170624290	16:12280243	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000048471	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683459	15:81683470	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(2)	.	.	.
KIAA2012	SPANXB1(41300),LDOC1(66599)	+/.	./.	2:202083777	X:141045006	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP326651.1(2024),Y_RNA(174988)	DDB2	./.	+/.	9:65398396	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
CBWD2	TNIK	+/.	-/.	2:113437748	3:171458323	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136682	ENSG00000154310	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	PPP2R2D	./.	+/.	2:53114408	10:131957202	intergenic	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175470	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SEMA5B(2025),PDIA5(36395)	SEMA5B(2034),PDIA5(36386)	./.	./.	3:123030630	3:123030639	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),merge_adjacent	.	.	.
AL671862.1(133866),AC092265.1(78092)	DHFR	./.	-/.	1:29630759	5:80651213	intergenic	intron	translocation	0	0	0	0	128	low	.	.	.	.	.	.	ENSG00000228716	.	.	upstream	downstream	duplicates(3),mismatches(2)	.	.	.
AC006499.7(80978),AC110768.2(34439)	AP000445.2(7167),TMA16P1(28017)	./.	./.	4:10376557	11:58768220	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AGAP1	CACNA1H	+/.	+/.	2:235963181	16:1165187	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000157985	ENSG00000196557	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC23A1	FP671120.4	-/.	+/.	5:139376762	21:8214783	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000170482	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211705	21:8441661	intron	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
STK10	AL138720.1(7179),AL050335.1(5597)	-/.	./.	5:172060094	6:15097349	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000072786	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01060	FP236383.3	+/.	+/.	4:188533876	21:8438953	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000249378	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
SHANK3	CDH8	+/+	-/-	22:50674511	16:61831043	5'UTR	intron	translocation	0	0	0	0	57	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000251322	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
TMPRSS6(15798),IL2RB(332)	TMPRSS6(15856),IL2RB(274)	./.	./.	22:37125511	22:37125569	intergenic	intergenic	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(6)	.	.	.
STX8	MT-RNR2	-/.	+/.	17:9536122	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000170310	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257425	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
WWC1	AL450267.2	+/.	+/.	5:168337914	9:36819088	intron	intron	translocation/3'-3'	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	ENSG00000287514	.	.	upstream	upstream	mismatches(1)	.	.	.
LTBP4	MT-RNR2	+/.	+/.	19:40596997	MT:2224	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000090006	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SEMA5B(2030),PDIA5(36390)	SEMA5B(2039),PDIA5(36381)	./.	./.	3:123030635	3:123030644	intergenic	intergenic	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650272	21:8397351	intron	intron	translocation/3'-3'	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
Metazoa_SRP(5472),Y_RNA(20729)	FP236383.3	./.	+/.	10:21460987	21:8441655	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MYL10(431),CUX1(186177)	AC105180.2(10848),ZFAT(76453)	./.	./.	7:101629727	8:134401335	intergenic	intergenic	translocation	1	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(19),min_support,mismatches(1)	.	.	.
GPR55	MTND1P22(591),AC107208.1(31696)	-/.	./.	2:230948894	4:155464414	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000135898	.	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	AF127577.4	./.	-/.	14:100612119	21:14845956	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000235609	.	.	upstream	upstream	mismatches(1)	.	.	.
FTH1P5(291546),AL158050.2(180480)	GNL3L	./.	+/.	6:51204802	X:54578320	intergenic	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC008163.1	NPAS3	-/-	+/+	7:81578762	14:33799874	exon	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	ENSG00000233491	ENSG00000151322	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
NOS1	MSANTD3-TMEFF1	-/-	+/-	12:117265422	9:100456468	CDS	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	ENSG00000251349	.	.	upstream	downstream	mismatches(1)	.	.	.
TLE4	FP236383.3	+/.	+/.	9:79572888	21:8444041	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RALYL	RALYL	+/.	+/.	8:84735809	8:84735856	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000184672	ENSG00000184672	.	.	upstream	downstream	small_insert_size	.	.	.
ERFE	CUBNP3	+/+	+/-	2:238163860	10:45132912	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178752	ENSG00000235690	.	.	downstream	downstream	mismatches(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	TGM3(7995),TGM6(31827)	./.	./.	14:100612119	20:2349074	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022826.2	AP001059.2(1968),AP001059.1(496)	-/.	./.	8:73820101	21:44244049	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021087.4(356),CCDC127(171)	5_8S_rRNA(2077),FP236383.3(121633)	./.	./.	5:196697	21:8259010	intergenic	intergenic	translocation	0	0	0	12	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
TP73	UBE3C(2771),AC004975.2(9395)	+/.	./.	1:3723876	7:157272141	intron	intergenic	translocation	0	0	0	2	7	low	.	.	.	.	.	ENSG00000078900	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DENND1A	CR392039.1(1016),CR392039.3(8050)	-/.	./.	9:123387695	21:8988446	intron	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000119522	.	.	.	downstream	upstream	duplicates(3),mismatches(4)	.	.	.
CTNNA2	CTNNA2	+/.	+/.	2:79384373	2:79384434	intron	intron	duplication/ITD	0	0	0	29	29	low	.	.	.	.	.	ENSG00000066032	ENSG00000066032	.	.	upstream	downstream	duplicates(6),low_entropy(5)	.	.	.
LINC00376(68568),AL359208.1(314)	APBA2	./.	+/.	13:63396697	15:29078666	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000034053	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ENTPD1-AS1	FP236383.3	-/.	+/.	10:95984176	21:8398431	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226688	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SEC14L5	5_8S_rRNA(2079),FP236383.3(121631)	+/+	./+	16:5011163	21:8259012	CDS	intergenic	translocation	0	0	0	4	5911	low	.	.	CRAL/TRIO__N-terminal_domain(100%),CRAL/TRIO_domain(100%),PRELI-like_family(100%)|	.	.	ENSG00000103184	.	.	.	downstream	upstream	mismatches	.	.	.
COL23A1	MID1	-/.	-/.	5:178373376	X:10619145	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000050767	ENSG00000101871	.	.	downstream	upstream	mismatches(1)	.	.	.
FBXL7	RPL6P21(23500),DGKB(50169)	+/.	./.	5:15556238	7:14094880	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000183580	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL606469.1(23737),AL606469.2(24487)	NKX2-2(8624),AL133325.2(7434)	./.	./.	10:23368918	20:21522688	intergenic	intergenic	translocation	0	0	0	4	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
TTC4	MROH7-TTC4	+/.	+/.	1:54736176	1:54736191	intron	intron	duplication	0	0	0	14	14	low	.	.	.	.	.	ENSG00000243725	ENSG00000271723	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
GAU1	GAU1	-/.	-/.	12:4702127	12:4702200	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255474	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DLG2	PCDH11X	-/.	+/.	11:85484188	X:92108311	intron	intron	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000102290	.	.	upstream	upstream	mismatches(1)	.	.	.
CACNA1B	MT-RNR1	+/.	+/.	9:137987193	MT:950	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000148408	ENSG00000211459	.	.	downstream	upstream	duplicates(2),uninteresting_contigs(2)	.	.	.
NELFB	LINC00511	+/.	-/.	9:137272637	17:72537262	intron	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	ENSG00000188986	ENSG00000227036	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	Z96074.1	./.	+/.	3:35255769	X:137574882	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000283692	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47233103	21:8441661	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
AC008691.1	DEDD2	+/.	-/.	5:159645742	19:42217199	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000160570	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
FAM228B	LINC02864	+/.	-/.	2:24156767	18:73168244	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000219626	ENSG00000263711	.	.	upstream	upstream	mismatches(1)	.	.	.
DENND2B	FP236383.3	-/.	+/.	11:8868036	21:8444807	intron	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000166444	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ELMO1	NELFB	-/.	+/.	7:37176421	9:137267315	intron	CDS	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000155849	ENSG00000188986	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
BARHL2	LINC00114(197),ETS2(57526)	-/.	./.	1:90713511	21:38747657	intron	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000143032	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214789	21:8392868	intron	intron	inversion/3'-3'	0	0	0	5263	43	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
RAMP3(65699),AC073968.2(16680)	DLG2	./.	-/.	7:45252001	11:85484196	intergenic	intron	translocation	0	0	0	71	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1371054	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	CRADD	-/.	+/.	11:83484719	12:93846255	intron	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000150672	ENSG00000169372	.	.	downstream	downstream	mismatches(2)	.	.	.
CADM2	AC004946.1(17650),KCND2(28312)	+/.	./.	3:85836872	7:120244863	intron	intergenic	translocation	0	0	0	19	9	low	.	.	.	.	.	ENSG00000175161	.	.	.	upstream	downstream	duplicates(3),mismatches(4)	.	.	.
PCGEM1(284165),AC096647.1(109640)	PRKAG2	./.	-/.	2:193061064	7:151786885	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000106617	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01060	FP671120.7(397),5_8S_rRNA(870)	+/.	./.	4:188533876	21:8255911	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
LINC01060	FP671120.4	+/.	+/.	4:188533876	21:8211705	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
5_8S_rRNA(107488),FP236383.3(16222)	FP236383.3	./.	+/.	21:8364421	21:8439284	intergenic	intron	deletion/read-through	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC093912.1(103819),AC073062.1(102171)	FP671120.4	./.	+/.	2:13435502	21:8214396	intergenic	intron	translocation	0	0	0	28	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(4)	.	.	.
AC098650.1	C7orf33	+/.	+/.	3:28559019	7:148605538	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000283563	ENSG00000170279	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01031	ZSWIM6	+/.	+/.	1:193358245	5:61408945	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000232077	ENSG00000130449	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL049833.4(25225),AL049833.2(77567)	AL049833.4(25238),AL049833.2(77554)	./.	./.	14:97032849	14:97032862	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
H3C10	AP001599.1	+/.	+/.	6:27810927	21:26914103	3'UTR	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000278828	ENSG00000223563	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
BICC1	FP671120.4	+/.	+/.	10:58688003	21:8214800	intron	intron	translocation	0	0	0	87	5263	low	.	.	.	.	.	ENSG00000122870	ENSG00000278996	.	.	downstream	upstream	duplicates(6),homopolymer(12)	.	.	.
RUFY4(18122),CXCR2(16586)	AATK	./.	-/.	2:218108703	17:81127563	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000181409	.	.	downstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AC079809.1(3678),LINC01287(207099)	AC079809.1(3729),LINC01287(207048)	./.	./.	7:153148266	7:153148317	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CSMD3	FP236383.3	-/.	+/.	8:113235338	21:8444818	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000164796	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683462	15:81683471	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
AC078980.1	SLC5A11	+/.	+/.	3:109700822	16:24883973	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000242029	ENSG00000158865	.	.	upstream	downstream	mismatches(2)	.	.	.
PGBD2	GALR1(25404),AC124254.2(118315)	+/.	./.	1:248906244	18:77303304	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185220	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SFRP4(58451),STARD3NL(94099)	NPAS3	./.	+/.	7:38084146	14:33799874	intergenic	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	.	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
DDB2	FP671120.4	+/.	+/.	11:47233105	21:8212035	intron	intron	translocation	0	0	0	341	20	low	.	.	.	.	.	ENSG00000134574	ENSG00000278996	.	.	downstream	upstream	duplicates(1)	.	.	.
H3C10	FP236383.3	+/.	+/.	6:27810928	21:8438953	3'UTR	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000278828	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AP001599.1	IL3RA	+/.	+/.	21:26914103	X:1354865	intron	intron	translocation/5'-5'	0	0	0	167	18	low	.	.	.	.	.	ENSG00000223563	ENSG00000185291	.	.	downstream	downstream	duplicates(7),mismatches(2)	.	.	.
FOXO6(65590),RNA5SP45(17757)	AC034228.3	./.	-/.	1:41449180	5:132011045	intergenic	intron	translocation	0	0	0	1	7	low	.	.	.	.	.	.	ENSG00000281938	.	.	upstream	downstream	mismatches	.	.	.
SFTPC	THRAP3	+/+	+/-	8:22162705	1:36288847	CDS	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	Surfactant_protein_C__N_terminal_propeptide(62%)|	.	.	ENSG00000168484	ENSG00000054118	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARPC4	FP671120.4	+/+	+/+	3:9792515	21:8207899	5'UTR	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000241553	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC093627.22	AC005614.2	-/.	-/.	7:117610	19:40090463	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000269749	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	LINC01608	-/.	-/.	7:117610	8:110977286	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000253877	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH6	TASOR(6973),ARHGEF3(37208)	+/.	./.	2:84542579	3:56690210	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000115423	.	.	.	downstream	downstream	mismatches(1)	.	.	.
H3C10	FP236383.3	+/.	+/.	6:27810928	21:8394740	3'UTR	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000278828	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	12:105046150	12:105046165	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000136010	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
PEBP4	DDB2	-/.	+/.	8:22928687	11:47233105	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000134020	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
TPTE2P1(13485),RPL34P27(6605)	DNMT3L-AS1	./.	+/.	13:24981972	21:44250998	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000232010	.	.	downstream	downstream	mismatches(1)	.	.	.
H3C10	DDB2	+/.	+/.	6:27810928	11:47233103	3'UTR	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000278828	ENSG00000134574	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
NBPF7	P2RY1(38282),HMGN2P13(187557)	-/.	./.	1:119844203	3:152879721	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000215864	.	.	.	downstream	upstream	mismatches(1)	.	.	.
POLE	SDK1	-/-	+/+	12:132650318	7:4133259	exon	intron	translocation	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|Fibronectin_type_III_domain(43%)	.	.	ENSG00000177084	ENSG00000146555	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022826.2	GDA	-/.	+/.	8:73820102	9:72149977	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000119125	.	.	upstream	upstream	duplicates(5)	.	.	.
KIAA2012-AS1	AL163974.1(22793),LINC00523(45131)	-/.	./.	2:202083777	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091078.1	FP671120.4	+/.	+/.	15:93232876	21:8214781	intron	intron	translocation/3'-3'	0	0	0	8	5263	low	.	.	.	.	.	ENSG00000257060	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824754	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(4)	.	.	.
FP671120.7(397),5_8S_rRNA(870)	5_8S_rRNA(1693),FP236383.3(122017)	./.	./.	21:8255911	21:8258626	intergenic	intergenic	inversion	0	0	0	0	44	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
LINC02339(25673),RAC1P8(351531)	AC006504.5	./.	+/.	13:61453619	19:27961840	intergenic	intron	translocation	0	0	0	3	4	low	.	.	.	.	.	.	ENSG00000267575	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8420287	21:8438935	intron	intron	inversion/3'-3'	0	0	0	0	159	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC116611.1	ARHGEF40	-/.	+/.	4:32711207	14:21071327	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286784	ENSG00000165801	.	.	upstream	upstream	mismatches(1)	.	.	.
IL15(110187),INPP4B(178986)	GDA	./.	+/.	4:141844174	9:72149977	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000119125	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
TMC1	FP236383.3	+/.	+/.	9:72523161	21:8397828	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000165091	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(4)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211705	21:8397441	intron	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
DHRS9	GPC3	+/.	-/.	2:169079995	X:133661639	intron	intron	translocation	0	0	0	29	143	low	.	.	.	.	.	ENSG00000073737	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394740	21:8397441	intron	intron	inversion/3'-3'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
COMMD10	FP671120.4	+/.	+/.	5:116216381	21:8218218	intron	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	ENSG00000145781	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRC20	FCGRT	-/.	+/.	10:70322164	19:49524822	intron	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172731	ENSG00000104870	.	.	upstream	upstream	mismatches(1)	.	.	.
CLIC4	RPL7P59(171589),AC004911.1(56984)	+/.	./.	1:24839660	7:145212530	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169504	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC006058.1(5932),TOPAZ1(113589)	YIPF2	./.	-/.	3:44128297	19:10928318	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000130733	.	.	downstream	upstream	mismatches(1)	.	.	.
MTND1P22(591),AC107208.1(31696)	RPL10L(115581),MDGA2(72267)	./.	./.	4:155464414	14:46767362	intergenic	intergenic	translocation	0	0	0	23	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
FRMD4B	MTFR1P1(64623),AL592049.1(10946)	-/.	./.	3:69422198	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000114541	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZIC5	NGB	-/.	-/.	13:99971192	14:77269819	CDS	intron	translocation/3'-3'	0	0	0	12	32	low	.	.	.	.	.	ENSG00000139800	ENSG00000165553	.	.	downstream	downstream	mismatches	.	.	.
CCSER2	LINC02686(2278),Y_RNA(191415)	+/.	./.	10:84328995	11:24264496	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000107771	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
TDO2	FP671120.4	+/.	+/.	4:155871604	21:8214396	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000151790	ENSG00000278996	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
ACSL6	NFATC1	-/.	+/.	5:132011045	18:79524774	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000164398	ENSG00000131196	.	.	downstream	downstream	mismatches(1)	.	.	.
GALNT17	TLNRD1	+/.	+/.	7:71277855	15:81002935	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000185274	ENSG00000140406	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23082),AC108865.1(141165)	LINC02098(161795),ETS1(55525)	./.	./.	4:186749804	11:128403236	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AUTS2	RALGDS	+/.	-/.	7:69895558	9:133148049	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000158321	ENSG00000160271	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK13	LINC01320	+/+	+/-	7:39951169	2:33767498	CDS	intron	translocation/5'-5'	0	0	0	0	72	low	.	.	.	.	.	ENSG00000065883	ENSG00000228262	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RGS3	KIAA1217	+/.	+/.	9:113528189	10:23752022	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000138835	ENSG00000120549	.	.	upstream	downstream	mismatches(1)	.	.	.
SLCO1B1	FP236383.3	+/.	+/.	12:21146487	21:8401256	intron	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	ENSG00000134538	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GAPDHP75(532267),RNA5SP73(590)	THADA	./.	-/.	1:189665559	2:43464624	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000115970	.	.	upstream	upstream	mismatches(1)	.	.	.
ITGA2B	TFB1M	-/-	-/+	17:44384408	6:155280048	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000005961	ENSG00000029639	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	RGS17(21613),RNA5SP224(6325)	./.	./.	2:240393940	6:153152895	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
H19(107603),AC132217.2(20039),IGF2(20039)	H4-16	./.	-/.	11:2109073	12:14769962	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000197837	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	FP671120.4	+/.	+/.	11:47233103	21:8214403	intron	intron	translocation	0	0	0	341	8	low	.	.	.	.	.	ENSG00000134574	ENSG00000278996	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8438953	21:8441661	intron	intron	inversion/3'-3'	0	0	0	139	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
AC087516.1(44632),AC087516.2(50174)	PEDS1	./.	-/.	15:36388798	20:50139064	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000240849	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	6:93664693	6:93664792	intron	intron	duplication/ITD	0	0	0	22	15	low	.	.	.	.	.	ENSG00000287683	ENSG00000287683	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
EDIL3-DT(174244),PPIAP79(334803)	IQCH	./.	+/.	5:84665009	15:67310422	intergenic	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	.	ENSG00000103599	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
SORL1	STK35	+/+	+/-	11:121608913	20:2128814	exon	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	Fibronectin_type_III_domain(67%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%),Sortilin__neurotensin_receptor_3_(100%),Sortilin__neurotensin_receptor_3__C-terminal(100%)|	.	.	ENSG00000137642	ENSG00000125834	.	.	downstream	downstream	homopolymer(1)	.	.	.
DYM	DYM	-/.	-/.	18:49317552	18:49317565	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000141627	ENSG00000141627	.	.	upstream	downstream	duplicates(9),low_entropy(6)	.	.	.
AL121970.1(82487),MEMO1P2(108038)	ABCB1	./.	-/.	6:134789836	7:87589088	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000085563	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3519),ELMOD1(669)	./.	./.	11:107590331	11:107590422	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(7)	.	.	.
DDB2	FP671120.4	+/.	+/.	11:47233103	21:8212035	intron	intron	translocation	0	0	0	341	20	low	.	.	.	.	.	ENSG00000134574	ENSG00000278996	.	.	downstream	upstream	duplicates(12),mismatches(2)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47233103	21:8395070	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	downstream	upstream	duplicates(12),mismatches(2)	.	.	.
FHIT	SLC25A51P4(4429),SAA4(12364)	-/.	./.	3:60147830	11:18218991	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000189283	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA2012-AS1	PPARGC1A(567576),DHX15(45776)	-/.	./.	2:202083777	4:24471665	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AASS	FP236383.3	-/.	+/.	7:122096894	21:8433768	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000008311	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02339(168911),RAC1P8(208293)	TRMT2A	./.	-/.	13:61596857	22:20116916	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000099899	.	.	downstream	downstream	mismatches(1)	.	.	.
HMMR-AS1	CNTN1(58991),PDZRN4(56914)	-/.	./.	5:163483510	12:41131406	intron	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000251018	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC109492.1	AC109492.1	+/.	+/.	5:87019431	5:87019444	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000249061	ENSG00000249061	.	.	upstream	downstream	duplicates(2),low_entropy(5)	.	.	.
TTLL3	AC093627.1	+/+	-/-	3:9809808	7:76393	5'UTR	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000232325	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SYPL2	ENTPD2(3167),AL807752.2(435)	+/+	./+	1:109467068	9:137057228	CDS	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000143028	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479809	10:104479824	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(6),merge_adjacent	.	.	.
TFRC	LINC02864	-/-	-/+	3:196081919	18:73168244	5'UTR	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000072274	ENSG00000263711	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC122683.1(65968),HMGN2P24(27671)	FP236383.3	./.	+/.	3:40671395	21:8400584	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	AC114689.3	+/.	+/.	10:104396444	18:67642034	intron	intron	translocation	0	0	0	554	1	low	.	.	.	.	.	ENSG00000120051	ENSG00000265533	.	.	downstream	upstream	mismatches	.	.	.
GLI2	Y_RNA(263921),AC026320.2(47191)	+/.	./.	2:120797221	3:191905158	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000074047	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC099520.1(427380),RNA5SP189(102644)	CCDC178	./.	-/.	5:105820350	18:32975568	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000166960	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHFR	MTRNR2L8	-/.	-/.	5:80650268	11:10508684	intron	5'UTR	translocation/3'-3'	0	0	0	68	8	low	.	.	.	.	.	ENSG00000228716	ENSG00000255823	.	.	downstream	downstream	mismatches(1)	.	.	.
SPATA5	THEMIS	+/.	-/.	4:123311781	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000145375	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	CR392039.1(944),CR392039.3(8122)	+/.	./.	21:8397823	21:8988374	intron	intergenic	inversion	0	0	0	1126	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
ANKMY2	PLCB4	-/.	+/.	7:16603058	20:9168924	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106524	ENSG00000101333	.	.	downstream	upstream	mismatches(1)	.	.	.
OBP2B	FP236383.3	-/.	+/.	9:133205870	21:8442048	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000171102	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC093912.1(103817),AC073062.1(102173)	TOGARAM2	./.	+/.	2:13435500	2:28994439	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000189350	.	.	downstream	upstream	mismatches(1)	.	.	.
CBLB(204073),AC131237.1(86792)	FP236383.3	./.	+/.	3:106073625	21:8442145	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
CDC20B(22558),MCIDAS(23829)	MT-RNR2	./.	+/.	5:55195735	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LIN52(32941),VSX2(5273)	ATP1B4(20353),LAMP2(22546)	./.	./.	14:74234176	X:120403602	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL080313.1	DACT2(25892),AL138918.1(29028)	+/.	./.	6:14402223	6:168345669	intron	intergenic	deletion	0	0	0	4	0	low	.	.	.	.	.	ENSG00000234540	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL451042.1(2729),ARHGEF19-AS1(33242),ARHGEF19(33242)	AC092170.1(239686),AC064856.1(115139)	./.	./.	1:16164612	2:117421248	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236366	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	AP001977.1	+/.	+/.	10:104396457	11:121765749	intron	intron	translocation/5'-5'	0	0	0	554	4	low	.	.	.	.	.	ENSG00000120051	ENSG00000286044	.	.	downstream	downstream	low_entropy	.	.	.
ENPP7P8	CCDC178	+/.	-/.	11:71745056	18:32975571	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255319	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	TEX101	-/.	+/.	5:80651674	19:43406229	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000131126	.	.	downstream	upstream	mismatches(1)	.	.	.
AL671862.1(133866),AC092265.1(78092)	MT-RNR1	./.	+/.	1:29630759	MT:1505	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
Z82209.2(161636),AL662814.1(67003)	Z82209.2(161694),AL662814.1(66945)	./.	./.	X:127556407	X:127556465	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(3)	.	.	.
U3(104497),GPC1(41723)	FP236383.3	./.	+/.	2:240393940	21:8397852	intergenic	intron	translocation	0	0	0	357	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AP000770.1(4690),LINC02702(24638)	GLP2R	./.	+/.	11:116614784	17:9862138	intergenic	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	.	ENSG00000065325	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
FBXW7	SLC41A2	-/-	-/-	4:152411373	12:104887334	CDS	intron	translocation	0	0	0	0	0	low	.	.	|Divalent_cation_transporter(65%)	.	.	ENSG00000109670	ENSG00000136052	.	.	upstream	downstream	mismatches(1)	.	.	.
BICC1	ATP9B(2397),NFATC1(15172)	+/.	./.	10:58688003	18:79380684	intron	intergenic	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	.	.	.	downstream	upstream	duplicates(1),homopolymer(2)	.	.	.
RN7SL643P(99273),AL353133.1(194297)	MYHAS	./.	+/.	6:86535411	17:10560410	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000272975	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ACSL6	CEP128	-/.	-/.	5:132011045	14:80775927	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000164398	ENSG00000100629	.	.	downstream	downstream	mismatches(1)	.	.	.
CTBP2	TMC4(92),MBOAT7(70)	-/.	./.	10:124992997	19:54173342	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000175029	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HDAC5	FP236383.3	-/-	+/+	17:44078031	21:8442059	3'UTR	intron	translocation	0	0	0	0	5962	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
CENPC(6847),STAP1(6377)	FP671120.4	./.	+/.	4:67552350	21:8214794	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC055854.1	FBXW5	+/.	-/.	8:22777915	9:136943086	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253125	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC108037.1(241923),LINC02270(61834)	DTNBP1(49300),ARPC3P5(222424)	./.	./.	4:12161611	6:15712358	intergenic	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP001823.1(3446),ELMOD1(742)	+/.	./.	10:104396370	11:107590349	intron	intergenic	translocation	0	0	0	558	1914	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
LCORL	RGMB-AS1	-/.	-/.	4:17910246	5:98771438	intron	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000178177	ENSG00000246763	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL513348.1(82080),RNU6-983P(53597)	RNA5SP291(191926),AL590381.1(118252)	./.	./.	1:194434506	9:103881503	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
IGF2BP2	MSH3	-/.	+/.	3:185735262	5:80854005	intron	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000073792	ENSG00000113318	.	.	downstream	downstream	mismatches(1)	.	.	.
TYRO3(16295),AC016134.1(9573)	TYRO3(16355),AC016134.1(9513)	./.	./.	15:41599884	15:41599944	intergenic	intergenic	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL645937.1(15202),AL645937.4(4339)	DHX8	./.	+/.	6:29158136	17:43546409	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000067596	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092944.1	ACSL6	+/.	-/.	3:157235696	5:132011044	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000243176	ENSG00000164398	.	.	downstream	downstream	mismatches(1)	.	.	.
NFU1P2(125288),LINC01776(7991)	LINC01731	./.	-/.	1:98202756	1:148280110	intergenic	intron	inversion	0	0	0	6	48	low	.	.	.	.	.	.	ENSG00000234283	.	.	downstream	downstream	mismatches	.	.	.
PSCA(9242),LY6K(8144)	UBBP4	./.	+/.	8:142691967	17:22095184	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263563	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	5_8S_rRNA(1692),FP236383.3(122018)	./.	./.	3:103984260	21:8258625	intergenic	intergenic	translocation	0	0	0	83	44	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC021820.1(17978),AC080100.1(4749)	DIO3(20724),AL049836.1(44808)	./.	./.	11:40102495	14:101584176	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ATR	LRAT	-/.	+/.	3:142507555	4:154635483	intron	intron	translocation/5'-5'	0	0	0	2	15	low	.	.	.	.	.	ENSG00000175054	ENSG00000121207	.	.	upstream	downstream	mismatches(1)	.	.	.
MUTYH	AC002463.1	-/.	+/.	1:45339835	7:112751479	5'UTR	intron	translocation/3'-3'	0	0	0	0	39	low	.	.	.	.	.	ENSG00000132781	ENSG00000223646	.	.	downstream	upstream	mismatches(1)	.	.	.
AC013762.1	FP236383.3	-/.	+/.	11:13058343	21:8442659	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000255558	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF707	TSPOAP1-AS1	+/.	+/.	8:143684558	17:58385557	exon	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000181135	ENSG00000265148	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
BACH1	FIRRE	+/.	-/.	21:29263475	X:131708312	intron	intron	translocation/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000156273	ENSG00000213468	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02880(9169),HDAC2(2217)	AP003390.1(4502),AP001994.1(77179)	./.	./.	6:113930811	11:119744125	intergenic	intergenic	translocation	0	0	0	7	3002	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
FMN2	LINC01060	+/.	+/.	1:240200874	4:188533877	intron	intron	translocation/5'-5'	0	0	0	49	0	low	.	.	.	.	.	ENSG00000155816	ENSG00000249378	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
KIAA2012-AS1	SPANXB1(41300),LDOC1(66599)	-/.	./.	2:202083777	X:141045006	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	UBE2L3	+/.	+/.	21:8400584	22:21613411	intron	intron	translocation	0	0	0	7	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000185651	.	.	upstream	downstream	mismatches(1)	.	.	.
EHBP1L1	CRADD	+/+	+/-	11:65592551	12:93679806	3'UTR	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	Bivalent_Mical/EHBP_Rab_binding_domain(100%),Calponin_homology_(CH)_domain(100%),N-terminal_C2_in_EEIG1_and_EHBP1_proteins(100%)|	.	.	ENSG00000173442	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	FP671120.4	./.	+/.	2:218108703	21:8214800	intergenic	intron	translocation	0	0	0	193	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(16),homopolymer(18)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749075	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
DDB2	AP003973.3	+/.	+/.	11:47233103	11:111099120	intron	intron	inversion/3'-3'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000287028	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
AL049828.1	PAXBP1(157),C21orf62-AS1(151)	+/.	./.	14:40229599	21:32771949	intron	intergenic	translocation	0	0	0	7	466	low	.	.	.	.	.	ENSG00000258526	.	.	.	downstream	downstream	mismatches	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650927	21:8397443	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
IQSEC1	TLE4	-/.	+/.	3:13200292	9:79572888	intron	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000144711	ENSG00000106829	.	.	downstream	downstream	homopolymer(1)	.	.	.
AL929288.1(129026),AL929288.2(5862)	ACHE	./.	-/.	1:188665491	7:100894849	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000087085	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ETNK2	FP236383.3	-/-	+/+	1:204151711	21:8442059	CDS	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000143845	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
KRT8	ZNF543(13323),AC005261.2(6755)	-/.	./.	12:52904196	19:57344093	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000170421	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC125611.4	5_8S_rRNA(1688),FP236383.3(122022)	-/.	./.	12:49319361	21:8258621	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000258334	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC019117.1	RAD51B	-/.	+/.	7:17532328	14:68153275	intron	intron	translocation	0	0	0	5	2	low	.	.	.	.	.	ENSG00000236039	ENSG00000182185	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CCDC6	ANK3	-/.	-/.	10:59900214	10:60143980	intron	intron	deletion/read-through	0	0	0	13	1	low	.	.	.	.	.	ENSG00000108091	ENSG00000151150	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105252.1(292284),AC079380.1(3754)	AC025183.2(16914),IRX4(609)	./.	./.	4:133867492	5:1876804	intergenic	intergenic	translocation	0	0	0	11	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(4)	.	.	.
RNF43	FP236383.3	-/.	+/.	17:58385559	21:8440593	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DRD5P2	5_8S_rRNA(2003),FP236383.3(121707)	-/-	./-	1:144276692	21:8258936	exon	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000175658	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BAIAP2L1(191),PPIAP82(52838)	FP671120.4	./.	+/.	7:98401281	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
HBB	FP671120.4	-/.	+/.	11:5225537	21:8214797	3'UTR	intron	translocation/3'-3'	0	0	0	91	5263	low	.	.	.	.	.	ENSG00000244734	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AP003390.1(4503),AP001994.1(77178)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744126	15:44288393	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
ETNK2	AC097374.1	-/-	-/+	1:204151713	2:94903279	CDS	intron	translocation/5'-5'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000143845	ENSG00000259848	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
COMMD10	PHKB	+/.	+/.	5:116216381	16:47491353	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000145781	ENSG00000102893	.	.	downstream	downstream	mismatches(1)	.	.	.
LRFN2	ELAPOR1	-/+	+/+	6:40453438	1:109192610	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000156564	ENSG00000116299	.	.	downstream	upstream	mismatches(1)	.	.	.
ARMH3	BACH1	-/-	+/-	10:101889734	21:29263475	exon	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	Armadillo-like_helical_domain-containing_protein_3__C-terminal(67%)|	.	.	ENSG00000120029	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
H3C10	FP671120.7(397),5_8S_rRNA(870)	+/.	./.	6:27810928	21:8255911	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
SPATA7	FP236383.3	+/.	+/.	14:88427078	21:8397820	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000042317	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CCDC136(8126),FLNC(148)	TSPOAP1-AS1	./.	+/.	7:128830258	17:58385558	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000265148	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IGHJ5	IGHG1	-/-	-/-	14:105863814	14:105743070	CDS/splice-site	CDS/splice-site	deletion/read-through	0	1	0	13	26	low	.	.	.	.	.	ENSG00000242472	ENSG00000211896	.	.	upstream	downstream	duplicates(12),min_support	.	.	.
TRBV26(4558),TRBVB(10643)	RPL37P21(102351),RPS3AP52(200226)	./.	./.	7:142700741	13:68433964	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394722	21:8411580	intron	intron	inversion/3'-3'	0	0	0	154	3	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC01304(98707),AC012445.1(63813)	TATDN2	./.	+/.	2:4072831	3:10249513	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000157014	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7(397),5_8S_rRNA(870)	FP236383.3	./.	+/.	21:8255911	21:8441661	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683457	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CHRNB3	PRTG	+/+	-/-	8:42737022	15:55743114	3'UTR	5'UTR	translocation	0	0	0	4	0	low	.	.	Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)	.	.	ENSG00000147432	ENSG00000166450	.	.	downstream	downstream	mismatches(1)	.	.	.
GNG12-AS1	GPR39	+/.	+/.	1:68121502	2:132557875	intron	intron	translocation/5'-5'	0	0	0	3	10	low	.	.	.	.	.	ENSG00000232284	ENSG00000183840	.	.	downstream	downstream	mismatches(1)	.	.	.
AC097374.1	BRD1(231),Z98885.2(4706)	-/.	./.	2:94903279	22:49827743	intron	intergenic	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000259848	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNMBP	NKX6-2(1634),CFAP46(20611)	-/.	./.	10:99948205	10:132787781	intron	intergenic	duplication	0	0	0	0	4	low	.	.	.	.	.	ENSG00000107554	.	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
NKX2-5(3537),Y_RNA(15342)	PTPRN2	./.	-/.	5:173238848	7:158244937	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000155093	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8209829	21:8397829	intron	intron	inversion/3'-3'	0	0	0	48	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NAGPA-AS1	5_8S_rRNA(2079),FP236383.3(121631)	+/+	./+	16:5011163	21:8259012	exon	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000267072	.	.	.	downstream	upstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262566	intergenic	intron	translocation	0	0	0	71	2136	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
RN7SL271P(106923),LINC00877(9198)	AC008014.1	./.	+/.	3:71934394	12:46639334	intergenic	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000257261	.	.	downstream	upstream	duplicates(5),mismatches(2)	.	.	.
SLC36A2(7216),AC034205.2(11493)	NUP50	./.	+/.	5:151354806	22:45164252	intergenic	5'UTR	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000093000	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L1	TAFA5	+/.	+/.	17:22523880	22:48741205	5'UTR	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000256618	ENSG00000219438	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ANKRD35	LINC01377(90356),LINC01019(85421)	-/-	./+	1:145885792	5:3271843	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198483	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC055854.1	AL163974.1(22793),LINC00523(45131)	+/.	./.	8:22777914	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000253125	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006538.4	WDR25	+/+	+/-	19:2721773	14:100478767	exon	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000286460	ENSG00000176473	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
KIF26B	AC004882.1	+/.	-/.	1:245500131	22:29711529	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000162849	ENSG00000232396	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
SLIT3	CBS	-/-	-/-	5:168749479	21:43058868	CDS	CDS	translocation	0	0	0	4	0	low	.	.	Leucine_rich_repeat(79%),Leucine_rich_repeat_C-terminal_domain(73%),Leucine_rich_repeat_N-terminal_domain(67%)|CBS_domain(56%)	.	.	ENSG00000184347	ENSG00000160200	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ATP2C1	PRKD1	+/.	-/.	3:130939924	14:29782394	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000017260	ENSG00000184304	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AP003066.1	SMAD3	+/.	+/.	11:96847852	15:67126777	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000254587	ENSG00000166949	.	.	downstream	upstream	mismatches(1)	.	.	.
AC027315.1(51308),RN7SKP62(23780)	ADAP1	./.	-/.	5:100709278	7:954509	intergenic	5'UTR	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000105963	.	.	downstream	downstream	mismatches(1)	.	.	.
ETNK2	LETM1	-/-	-/-	1:204151713	4:1841522	CDS	CDS	translocation	0	0	0	0	32	low	.	.	|LETM1-like__RBD(100%)	.	.	ENSG00000143845	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
BBS9	PHKB	+/.	+/.	7:33425896	16:47491352	intron	intron	translocation	0	0	0	62	0	low	.	.	.	.	.	ENSG00000122507	ENSG00000102893	.	.	upstream	downstream	mismatches(1)	.	.	.
PEDS1	AL592504.1(11588),TMEM47(98129)	-/.	./.	20:50139064	X:34528946	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000240849	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	1:148280006	1:148280104	intron	intron	duplication/ITD	0	0	0	55	48	low	.	.	.	.	.	ENSG00000234283	ENSG00000234283	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02225(171108),LINC02101(37361)	AC015908.7	./.	+/.	5:58070270	17:10879829	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285220	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC034228.3	RAB11FIP4	-/.	+/.	5:132011045	17:31392208	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000281938	ENSG00000131242	.	.	downstream	downstream	mismatches(1)	.	.	.
DCHS2	SAMD12	-/.	-/.	4:154351661	8:118554924	intron	intron	translocation/3'-3'	0	0	0	2	21	low	.	.	.	.	.	ENSG00000197410	ENSG00000177570	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683459	15:81683470	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(2)	.	.	.
AL033529.1	ZIC1	+/.	+/.	1:32507193	3:147502554	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	ENSG00000152977	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104494),GPC1(41726)	UNC5A	./.	+/.	2:240393937	5:176847697	intergenic	intron	translocation	0	0	0	357	2	low	.	.	.	.	.	.	ENSG00000113763	.	.	upstream	upstream	mismatches(2)	.	.	.
TOGARAM2	FP671120.4	+/.	+/.	2:29042539	21:8214796	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000189350	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
APC2	5_8S_rRNA(2078),FP236383.3(121632)	+/+	./+	19:1468505	21:8259011	CDS	intergenic	translocation	0	0	0	4	5911	low	.	.	APC_repeat(100%),Adenomatous_polyposis_coli_(APC)_repeat(100%),Adenomatous_polyposis_coli_tumour_suppressor_protein(100%),Armadillo-associated_region_on_APC(100%),Armadillo/beta-catenin-like_repeat(100%),Coiled-coil_N-terminus_of_APC__dimerisation_domain(100%),SAMP_Motif(100%)|	.	.	ENSG00000115266	.	.	.	downstream	upstream	mismatches	.	.	.
ETNK2	FP671120.4	-/-	+/+	1:204151711	21:8214795	CDS	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000143845	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NEBL	FP236383.3	-/.	+/.	10:20893508	21:8438970	intron	intron	translocation/5'-5'	0	0	0	0	159	low	.	.	.	.	.	ENSG00000078114	ENSG00000280441	.	.	upstream	downstream	mismatches	.	.	.
AC110751.1(57508),AC105383.1(29126)	KDM4C	./.	+/.	4:133046185	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	AC046168.2	./.	+/.	5:36444163	15:77587771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259420	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
KPNA4	AC109466.1	-/.	+/.	3:160554562	5:164476683	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186432	ENSG00000241956	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP001823.1(3437),ELMOD1(751)	AP001823.1(3536),ELMOD1(652)	./.	./.	11:107590340	11:107590439	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(35)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479909	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
MTRNR2L12	THEMIS	-/.	-/.	3:96617946	6:127735530	5'UTR	intron	translocation/3'-3'	0	0	0	3	33	low	.	.	.	.	.	ENSG00000269028	ENSG00000172673	.	.	downstream	downstream	mismatches(1)	.	.	.
LETM1	AC025183.2(16914),IRX4(609)	-/.	./.	4:1841522	5:1876804	CDS	intergenic	translocation	0	0	0	32	8	low	.	.	.	.	.	ENSG00000168924	.	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
PDGFC	5_8S_rRNA(2692),FP236383.3(121018)	-/.	./.	4:156862368	21:8259625	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145431	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC034228.3	C2CD2	-/.	-/.	5:132011045	21:41948380	intron	intron	translocation	0	0	0	7	3	low	.	.	.	.	.	ENSG00000281938	ENSG00000157617	.	.	downstream	upstream	mismatches	.	.	.
ARHGAP30	AP000255.1(48395),TPT1P1(55539)	-/.	./.	1:161059767	21:31784802	intron	intergenic	translocation	0	0	0	31	90	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
AC092944.1	XKR3	+/.	-/.	3:157252490	22:16791828	intron	intron	translocation/3'-3'	0	0	0	26	4	low	.	.	.	.	.	ENSG00000243176	ENSG00000172967	.	.	upstream	downstream	low_entropy	.	.	.
FBXW5	MRPS11P1(70077),AL133465.1(45729)	-/.	./.	9:136943086	20:20924719	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC35E4	FP671120.4	+/+	+/+	22:30636548	21:8214795	CDS	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000100036	ENSG00000278996	.	.	downstream	upstream	mismatches(2)	.	.	.
AGAP1	EPS8	+/.	-/.	2:235963181	12:15762415	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000157985	ENSG00000151491	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01320	PCMTD1	+/.	-/.	2:33767473	8:51864075	intron	intron	translocation	0	0	0	81	4	low	.	.	.	.	.	ENSG00000228262	ENSG00000168300	.	.	upstream	upstream	mismatches	.	.	.
LETM1	BRD1(231),Z98885.2(4706)	-/.	./.	4:1841522	22:49827743	CDS	intergenic	translocation	0	0	0	32	0	low	.	.	.	.	.	ENSG00000168924	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
TUBBP11(353349),RAP1BP2(78778)	HELQ(45),MRPS18C(32)	./.	./.	3:103984261	4:83455900	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
USP40(3556),UGT1A12P(15101)	LINC01484	./.	-/.	2:233570338	5:173742753	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000253686	.	.	upstream	upstream	mismatches(1)	.	.	.
ETNK2	5_8S_rRNA(2091),FP236383.3(121619)	-/-	./+	1:204151711	21:8259024	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000143845	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	LHX5	./.	-/.	8:49417336	12:113470553	intergenic	intron	translocation	0	0	0	30	0	low	.	.	.	.	.	.	ENSG00000089116	.	.	upstream	upstream	mismatches(1)	.	.	.
CUX1	WDR72	+/.	-/.	7:101816253	15:53648351	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000257923	ENSG00000166415	.	.	upstream	upstream	mismatches(1)	.	.	.
AL359258.1	AL390038.1(4654),NBPF6(12444)	-/-	./-	1:108273076	1:108437838	exon	intergenic	deletion/read-through	0	0	0	0	2	low	.	.	.	.	.	ENSG00000238122	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC145350.2	FP671120.4	-/.	+/.	16:33059130	21:8214780	intron	intron	translocation/3'-3'	0	0	0	4	6035	low	.	.	.	.	.	ENSG00000260141	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
AL078602.1	AC004936.1	+/.	-/.	6:164005371	7:10029595	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000235538	ENSG00000287409	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	3:64736212	3:64736221	intron	intron	duplication/ITD	0	0	0	57	56	low	.	.	.	.	.	ENSG00000241684	ENSG00000241684	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1371286	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
DBNDD1	PYY	-/.	-/.	16:90019748	17:43995061	CDS	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000003249	ENSG00000131096	.	.	downstream	upstream	mismatches(1)	.	.	.
AL591519.1	RGN	+/.	+/.	6:93664793	X:47086735	intron	intron	translocation	0	0	0	15	40	low	.	.	.	.	.	ENSG00000287683	ENSG00000130988	.	.	downstream	upstream	duplicates(1)	.	.	.
BAIAP2L1(191),PPIAP82(52838)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	7:98401281	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
NUP98	NUP98	-/.	-/.	11:3702318	11:3702327	intron	intron	duplication/ITD	0	0	0	179	159	low	.	.	.	.	.	ENSG00000110713	ENSG00000110713	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CFAP58	AP003390.1(4494),AP001994.1(77187)	+/.	./.	10:104396370	11:119744117	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
RPL3P13(15257),CDS1(23351)	HPN-AS1	./.	-/.	4:84559776	19:35095527	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000227392	.	.	upstream	downstream	mismatches(1)	.	.	.
LIMD1	POTEG(47908),MED15P6(3087)	+/.	./.	3:45593628	14:19482249	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ABHD2	FP236383.3	+/.	+/.	15:89133592	21:8397434	intron	intron	translocation	0	0	0	3	543	low	.	.	.	.	.	ENSG00000140526	ENSG00000280441	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
DLG2	ABHD2	-/.	+/.	11:85484188	15:89133592	intron	intron	translocation/5'-5'	0	0	0	279	3	low	.	.	.	.	.	ENSG00000150672	ENSG00000140526	.	.	upstream	downstream	duplicates(30),mismatches(22)	.	.	.
ZER1	RNU6-728P(25111),PLEKHA1(3792)	-/.	./.	9:128756177	10:122370904	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160445	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RAD51B	AC092275.1	+/.	+/.	14:68714352	16:85260115	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000182185	ENSG00000287787	.	.	upstream	upstream	mismatches(1)	.	.	.
AC114321.1(205466),AC026403.1(21400)	AC093627.22	./.	-/.	5:166360905	7:117610	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000287883	.	.	downstream	upstream	mismatches(2)	.	.	.
TTPA(22952),AC011978.1(27218)	CEACAM21	./.	+/.	8:63109005	19:41564259	intergenic	intron	translocation	0	0	0	19	5	low	.	.	.	.	.	.	ENSG00000007129	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL035401.1	FP671120.4	-/.	+/.	6:22948035	21:8214786	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000233358	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	CCDC188(7578),AC007663.2(40096)	+/.	./.	11:47233105	22:20158633	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ASCL1(23987),AC026108.2(28862)	CCDC178	./.	-/.	12:102984500	18:32975568	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000166960	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DPY19L1P1	HDAC8	-/.	-/.	7:32749930	X:72350912	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000229358	ENSG00000147099	.	.	upstream	downstream	mismatches(1)	.	.	.
GGT7	GGT7	-/-	-/-	20:34845113	20:34845123	3'UTR	3'UTR	duplication/ITD	0	0	0	75	61	low	.	.	Gamma-glutamyltranspeptidase(100%)|	.	.	ENSG00000131067	ENSG00000131067	.	.	upstream	downstream	duplicates(15),low_entropy(2)	.	.	.
CDC27P1(3882),AC097532.1(18871)	PNMA3(3502),PNMA6A(8485)	./.	./.	2:132266924	X:153063969	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	SFMBT2	./.	-/.	1:146273933	10:7400841	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000198879	.	.	downstream	upstream	mismatches(1)	.	.	.
TMC4	AC012533.1	-/-	+/+	19:54168416	8:80923077	exon	intron	translocation	0	0	0	4	12	low	.	.	.	.	.	ENSG00000167608	ENSG00000286763	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
HNRNPA3P8(184084),AC108740.1(40763)	BICC1	./.	+/.	3:80401318	10:58688003	intergenic	intron	translocation	0	0	0	0	87	low	.	.	.	.	.	.	ENSG00000122870	.	.	downstream	downstream	duplicates(2)	.	.	.
ERFE	AL358394.3	+/+	-/-	2:238163860	10:45132912	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178752	ENSG00000277757	.	.	downstream	downstream	mismatches(1)	.	.	.
BACH1	ATP11C	+/.	-/.	21:29498375	X:139926293	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000156273	ENSG00000101974	.	.	downstream	downstream	mismatches(1)	.	.	.
MPRIP	ATP9B(2396),NFATC1(15173)	+/.	./.	17:17163618	18:79380683	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000133030	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KIF5C	FP236383.3	+/.	+/.	2:149002076	21:8389452	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000168280	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GATAD2A	MT-RNR2	+/.	+/.	19:19404101	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000167491	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GTF2IRD1P1	AC005258.1	-/.	+/.	7:66824572	19:2338920	intron	intron	translocation	0	0	0	8	15	low	.	.	.	.	.	ENSG00000230583	ENSG00000273734	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02458	LINC02458	-/.	-/.	12:89130183	12:89130233	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000246363	ENSG00000246363	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC026826.2(58120),RNU6-667P(467)	GLP2R	./.	+/.	15:79816882	17:9862138	intergenic	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	.	ENSG00000065325	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMTC1	EYA2	-/.	+/.	12:29769619	20:47029375	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000133687	ENSG00000064655	.	.	upstream	downstream	mismatches(1)	.	.	.
IPO9-AS1	NAV1	-/.	+/.	1:201702678	1:201702687	intron	intron	duplication/5'-5'	0	0	0	6	6	low	.	.	.	.	.	ENSG00000231871	ENSG00000134369	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SMYD2	5_8S_rRNA(1694),FP236383.3(122016)	+/.	./.	1:214296548	21:8258627	intron	intergenic	translocation	0	0	0	14	44	low	.	.	.	.	.	ENSG00000143499	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
C2orf83	C2orf83	-/.	-/.	2:227643250	2:227643288	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000042304	ENSG00000042304	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CDC27P1(3882),AC097532.1(18871)	CT867976.1(150834),AC138776.1(197046)	./.	./.	2:132266924	22:11630477	intergenic	intergenic	translocation	0	0	0	9	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.11(1898),FP236383.6(558)	+/.	./.	21:8438935	21:8464696	intron	intergenic	inversion	0	0	0	159	3	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
HTR3A(42047),ZBTB16(27351)	FP236383.3	./.	+/.	11:114032360	21:8442059	intergenic	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MYT1L(85626),AC018685.2(220888)	FP671120.4	./.	+/.	2:2417290	21:8214800	intergenic	intron	translocation	0	0	0	12	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(3),homopolymer(3)	.	.	.
BCAS3	CACNG7(16388),CACNG8(2711)	+/.	./.	17:60773878	19:53960329	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141376	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SMNDC1(50247),AL355512.1(73655)	5_8S_rRNA(2086),FP236383.3(121624)	./.	./.	10:110355185	21:8259019	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL355981.1	FP236383.3	-/.	+/.	1:86824099	21:8442059	intron	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	ENSG00000284846	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DGKH	TSPOAP1-AS1	+/.	+/.	13:42040508	17:58385558	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000102780	ENSG00000265148	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PABPC3	AL035443.1	+/.	-/.	13:24940989	X:137558601	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000151846	ENSG00000224765	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
C16orf95	AC114321.1(205467),AC026403.1(21399)	-/-	./-	16:87317150	5:166360906	CDS	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	downstream	mismatches(2)	.	.	.
HLA-L	HLA-B	+/+	-/-	6:30260607	6:31355592	exon/splice-site	CDS/splice-site	inversion	1	0	0	1	0	low	.	.	|Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000243753	ENSG00000234745	.	.	downstream	downstream	min_support	.	.	.
LINC01331(79560),ENC1(10870)	5_8S_rRNA(2092),FP236383.3(121618)	./.	./.	5:74616536	21:8259025	intergenic	intergenic	translocation	0	0	0	10	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
H3P28(100180),AL355297.2(11600)	ADD3	./.	+/.	6:156762617	10:110073069	intergenic	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	.	ENSG00000148700	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FNDC3B	FNDC3B	+/.	+/.	3:172358955	3:172358998	intron	intron	duplication/ITD	0	0	0	141	141	low	.	.	.	.	.	ENSG00000075420	ENSG00000075420	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
TMEM154	TMEM154	-/.	-/.	4:152661285	4:152661294	intron	intron	duplication/ITD	0	0	0	16	7	low	.	.	.	.	.	ENSG00000170006	ENSG00000170006	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
DHFR	Z98752.3	-/.	+/.	5:80651674	20:43556450	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000277611	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC39A11	MT-RNR1	-/.	+/.	17:72700398	MT:1502	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000133195	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
CDC27P1(3882),AC097532.1(18871)	ZNF804A	./.	+/.	2:132266924	2:184851967	intergenic	intron	deletion	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000170396	.	.	downstream	upstream	mismatches(1)	.	.	.
ATP1B1	IQCH	+/.	+/.	1:169119930	15:67310424	intron	intron	translocation/3'-3'	0	0	0	0	40	low	.	.	.	.	.	ENSG00000143153	ENSG00000103599	.	.	upstream	upstream	mismatches(1)	.	.	.
AC145350.2	5_8S_rRNA(2076),FP236383.3(121634)	-/.	./.	16:33059130	21:8259009	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000260141	.	.	.	downstream	upstream	mismatches	.	.	.
USP24	SPECC1L-ADORA2A	-/.	+/.	1:55122262	22:24299649	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162402	ENSG00000258555	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02235	LINC02620	+/.	-/.	8:81842439	10:104479907	intron	intron	translocation/3'-3'	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000254689	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
Metazoa_SRP(5472),Y_RNA(20729)	5_8S_rRNA(1687),FP236383.3(122023)	./.	./.	10:21460987	21:8258620	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093627.22	AL133229.1(221616),AL049812.2(56924)	-/.	./.	7:117610	20:41934216	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NFE2L2	Z93403.1	-/.	+/.	2:177255007	X:42277880	intron	intron	translocation/3'-3'	0	0	0	12	31	low	.	.	.	.	.	ENSG00000116044	ENSG00000231772	.	.	downstream	upstream	mismatches(1)	.	.	.
SCN4B	ZNF43(30920),ZNF208(49913)	-/.	./.	11:118139373	19:21883045	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000177098	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TMC1	FP236383.3	+/.	+/.	9:72523161	21:8442058	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000165091	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(4)	.	.	.
AC008269.1	UBE2W	+/.	-/.	2:206862122	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	ENSG00000104343	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1369891	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683463	15:81683472	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
AC004852.2(134345),GAPDHP68(290776)	TMEM68	./.	-/.	7:9324202	8:55769427	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000167904	.	.	downstream	downstream	mismatches(1)	.	.	.
ACSS3	FP236383.3	+/+	+/+	12:80937137	21:8442059	exon	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000111058	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
MRGPRE	AC084337.2	-/.	+/.	11:3231580	11:6496218	intron	intron	deletion/3'-3'	0	0	0	0	101	low	.	.	.	.	.	ENSG00000184350	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
UTS2(32674),TNFRSF9(29685)	LINC01804(33135),AC113608.1(24273)	./.	./.	1:7886186	2:15777474	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LHFPL4(299),DUSP5P2(46627)	AC092100.1	./.	-/.	3:9554121	7:69204253	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000225718	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	FXNP1(22689),NRXN3(87406)	-/.	./.	11:88092443	14:78082967	intron	intergenic	translocation	0	0	0	718	424	low	.	.	.	.	.	ENSG00000255102	.	.	.	downstream	upstream	low_entropy	.	.	.
DLGAP2	NDEL1	+/.	+/.	8:1207240	17:8463508	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000198010	ENSG00000166579	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02444	FP236383.3	+/.	+/.	12:73182054	21:8397434	intron	intron	translocation	0	0	0	3	543	low	.	.	.	.	.	ENSG00000258123	ENSG00000280441	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
MRPL13	SLC14A1	-/.	+/.	8:120418520	18:45711794	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172172	ENSG00000141469	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
THEMIS	UBBP4	-/.	+/.	6:127735531	17:22119022	intron	intron	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	ENSG00000263563	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ACSL3	AL512357.2(6022),AL512357.1(75587)	+/.	./.	2:222872803	14:104300943	intron	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000123983	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPR55	AC025627.3	-/.	+/.	2:230948894	17:19601314	intron	exon	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000135898	ENSG00000266179	.	.	upstream	upstream	duplicates(4),mismatches(1)	.	.	.
MFHAS1	U3(104495),GPC1(41725)	-/-	./+	8:8893383	2:240393938	5'UTR	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	ENSG00000147324	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EXOC7	SPIN3	-/.	-/.	17:76087874	X:56931247	exon	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000182473	ENSG00000204271	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PRDM16	PPP6R3	+/.	+/.	1:3279492	11:68530290	intron	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	ENSG00000142611	ENSG00000110075	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ERI3	TM9SF4	-/.	+/.	1:44320094	20:32160147	intron	intron	translocation	0	0	0	67	4	low	.	.	.	.	.	ENSG00000117419	ENSG00000101337	.	.	downstream	downstream	mismatches(2)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	3:64736204	3:64736261	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000241684	ENSG00000241684	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL157378.1(50260),AL078595.1(99819)	SLCO5A1	./.	-/.	6:94244918	8:69690369	intergenic	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	.	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
PSMB2(61207),C1orf216(11144)	GLP2R	./.	+/.	1:35702733	17:9862138	intergenic	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	.	ENSG00000065325	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GYG1	FP236383.3	+/.	+/.	3:149003468	21:8394478	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000163754	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GAPDHP36(89380),RALBP1P1(20619)	PSCA(9243),LY6K(8143)	./.	./.	3:180302488	8:142691968	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNF43	FP671120.4	-/.	+/.	17:58385559	21:8207432	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	ENSG00000278996	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
ERVK13-1	SCN4B	-/-	-/+	16:2663064	11:118139373	exon	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000260565	ENSG00000177098	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC004852.2(134346),GAPDHP68(290775)	SYT16	./.	+/.	7:9324203	14:61916727	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000139973	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC006499.8(7830),RAF1P1(8861)	DMBT1L1	./.	+/.	4:10246065	10:122824213	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000176584	.	.	upstream	upstream	mismatches(1)	.	.	.
AC004687.2	GAS2L1	-/.	+/.	17:58385558	22:29312407	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	ENSG00000185340	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL136366.1	FP671120.4	+/.	+/.	9:14346299	21:8214881	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225472	ENSG00000278996	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
AL512638.2(11092),ELOCP20(64162)	FP671120.4	./.	+/.	1:115492664	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
FP671120.6	FP671120.4	-/-	+/-	21:8210559	21:8211703	exon	intron	duplication/5'-5'	0	0	0	16	110	low	.	.	.	.	.	ENSG00000280800	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
EBF2(344),RNA5SP258(91123)	FP236383.3	./.	+/.	8:26045757	21:8397819	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(3)	.	.	.
LMNB1	TNFAIP1	+/+	+/-	5:126776742	17:28340233	5'UTR	intron	translocation/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000113368	ENSG00000109079	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC02512(56733),AC074255.1(52651)	AL161613.1(257),SNORD27(13233)	./.	./.	4:170429044	13:21126653	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TNFRSF8(4018),MIR7846(18718)	RARB	./.	+/.	1:12148225	3:25373702	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000077092	.	.	upstream	downstream	homopolymer(1)	.	.	.
BACH1-IT3	ATP11C	+/.	-/.	21:29498375	X:139926293	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000234293	ENSG00000101974	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA2012	UNC13C	+/.	+/.	2:202083777	15:54450207	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000137766	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1	HBB	-/-	-/-	12:117265422	11:5225537	CDS	3'UTR	translocation	0	0	0	0	91	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC145285.4	FP236383.3	-/.	+/.	16:28724081	21:8397439	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000261419	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC096588.1	FP236383.3	-/.	+/.	4:59626866	21:8398430	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249392	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TPT1P14(48522),RPL35AP37(90452)	TPT1P14(48531),RPL35AP37(90443)	./.	./.	X:15026985	X:15026994	intergenic	intergenic	duplication/ITD	0	0	0	26	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
MYOD1(1374),KCNC1(11264)	EYA2	./.	+/.	11:17723510	20:47029375	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000064655	.	.	upstream	downstream	mismatches(1)	.	.	.
KRT18P28(12711),RNU6-41P(9096)	MN1(31686),PITPNB(18227)	./.	./.	1:182973116	22:27833442	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PHKG2	FP671120.4	+/.	+/.	16:30749090	21:8213195	intron	intron	translocation/5'-5'	0	0	0	221	0	low	.	.	.	.	.	ENSG00000156873	ENSG00000278996	.	.	downstream	downstream	mismatches(1)	.	.	.
AC010967.1	KIAA2012-AS1	-/.	-/.	2:52766118	2:202083776	intron	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228033	ENSG00000222035	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
BICC1	GOLGA7B	+/.	+/.	10:58688003	10:97864903	intron	intron	deletion	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000155265	.	.	downstream	upstream	duplicates(3),homopolymer(2)	.	.	.
SLC5A11	ZNF529	+/.	-/.	16:24883973	19:36549376	intron	intron	translocation/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000158865	ENSG00000186020	.	.	downstream	upstream	mismatches(1)	.	.	.
METTL15	AC025580.2	+/.	+/.	11:28310966	15:45463029	intron	intron	translocation/5'-5'	0	0	0	167	71	low	.	.	.	.	.	ENSG00000169519	ENSG00000259354	.	.	downstream	downstream	low_entropy	.	.	.
LEMD1-DT(27304),CDK18(8268)	LEMD1-DT(27369),CDK18(8203)	./.	./.	1:205496328	1:205496393	intergenic	intergenic	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
GPR55	AC090204.1	-/.	+/.	2:230948894	8:33013509	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135898	ENSG00000247134	.	.	upstream	upstream	duplicates(4),mismatches(1)	.	.	.
PHIP	ALOX15(16236),PELP1(11244)	-/.	./.	6:78947959	17:4658530	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000146247	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AP001652.1	FP236383.3	-/.	+/.	11:58919736	21:8397818	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000255523	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
FGF14	PITPNC1	-/.	+/.	13:101979166	17:67378807	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000102466	ENSG00000154217	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	RP1L1(7767),SOX7(3814)	./.	./.	3:95431526	8:10719954	intergenic	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105916.1	SLC36A2(7202),AC034205.2(11507)	-/.	./.	4:9586741	5:151354792	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000287117	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC105252.1(292285),AC079380.1(3753)	HBB	./.	-/.	4:133867493	11:5225534	intergenic	3'UTR	translocation	0	0	0	11	91	low	.	.	.	.	.	.	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
SPATA7	FP671120.4	+/.	+/.	14:88427078	21:8214786	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000042317	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
TTYH3	FP236383.3	+/.	+/.	7:2660828	21:8397816	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000136295	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
GPR55	MTRNR2L10	-/.	-/.	2:230948894	X:55181913	intron	3'UTR	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000135898	ENSG00000256045	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
ST3GAL5(13880),AC012511.2(15456)	FP236383.3	./.	+/.	2:85919079	21:8397829	intergenic	intron	translocation	0	0	0	10	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
THRAP3P2(6696),SLCO3A1(103057)	MYH9	./.	-/.	15:91750651	22:36360030	intergenic	intron	translocation	0	0	0	21	6	low	.	.	.	.	.	.	ENSG00000100345	.	.	upstream	upstream	mismatches	.	.	.
SLC35F3	PPIAP74(97441),ZBBX(76082)	+/.	./.	1:234066090	3:167163761	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183780	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP671120.3(4285),FP671120.7(158)	+/.	./.	2:32916400	21:8254434	intron	intergenic	translocation	0	0	0	55	2	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
SLC2A9	RPL24P9(223684),AC074035.1(449955)	-/.	./.	4:9869326	X:4177245	intron	intergenic	translocation	1	0	0	1	22	low	.	.	.	.	.	ENSG00000109667	.	.	.	downstream	downstream	min_support	.	.	.
MSH3	CWF19L2	+/.	-/.	5:80854005	11:107448246	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000152404	.	.	downstream	upstream	mismatches(1)	.	.	.
ITGA2B	IL15(110189),INPP4B(178984)	-/-	./+	17:44384408	4:141844176	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000005961	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
NAT16(7904),MOGAT3(6810)	KCND2	./.	+/.	7:101188197	7:120626723	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000184408	.	.	downstream	upstream	mismatches(1)	.	.	.
AL391832.3(16783),LINC01348(67892)	DLG2	./.	-/.	1:234997587	11:83809290	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	downstream	mismatches(1)	.	.	.
FAM172A	Z98752.3	-/.	+/.	5:93920829	20:43556450	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113391	ENSG00000277611	.	.	downstream	upstream	mismatches(1)	.	.	.
LYPD6(60748),MMADHC(34751)	AC023141.7(4271051),AC128676.1(167264)	./.	./.	2:149534886	7:62108097	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC078980.1	SLC12A7(55922),CTD-3080P12.3(5156)	+/.	./.	3:109700822	5:1167985	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	.	.	.	upstream	downstream	mismatches(2)	.	.	.
FXNP1(22670),NRXN3(87425)	FXNP1(22769),NRXN3(87326)	./.	./.	14:78082948	14:78083047	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(20),low_entropy(5)	.	.	.
AC104777.1	ZNF397	-/.	+/.	2:150617538	18:35241225	intron	5'UTR	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000186812	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093912.1(103799),AC073062.1(102191)	LINC01982(244026),LINC02089(82394)	./.	./.	2:13435482	17:52779727	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AC116337.3	./.	-/.	2:240393940	5:75020587	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000249856	.	.	upstream	downstream	mismatches(1)	.	.	.
MIB2	RPSAP40(64259),UST(34174)	+/+	./+	1:1625669	6:148712856	exon	intergenic	translocation	0	0	0	3	0	low	.	.	Mib_herc2(100%),Mind_bomb_SH3_repeat_domain(49%),Zinc_finger__ZZ_type(100%)|	.	.	ENSG00000197530	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTND1P27(582),LRP1B(9356)	GPR55	./.	-/.	2:140222067	2:230948894	intergenic	intron	deletion	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000135898	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP236383.11(2065),FP236383.6(391)	./.	./.	21:8255893	21:8464863	intergenic	intergenic	inversion	0	0	0	143	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
PDPN	FP671120.4	+/.	+/.	1:13583783	21:8211701	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162493	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
CNTNAP3C(7629),AL935212.3(121154)	CLBA1	./.	+/.	9:61460659	14:105000768	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000140104	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104494),GPC1(41726)	NAE1	./.	-/.	2:240393937	16:66850329	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000159593	.	.	upstream	upstream	mismatches(1)	.	.	.
NIPAL4	PAFAH1B2	+/+	+/-	5:157460227	11:117146384	CDS	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000172548	ENSG00000168092	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01198(14975),LRCH1(22235)	LINC01198(15029),LRCH1(22181)	./.	./.	13:46530933	13:46530987	intergenic	intergenic	duplication/ITD	0	0	0	45	44	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FP671120.4	AC004882.1(46),CABP7(98)	+/.	./.	21:8214782	22:29719905	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
RUFY4(18118),CXCR2(16590)	AC023632.3(701),AC023632.4(3451)	./.	./.	2:218108699	8:94590960	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4502),AP001994.1(77179)	FXNP1(22668),NRXN3(87427)	./.	./.	11:119744125	14:78082946	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
RREB1	AC004869.1(133087),HMGN1P19(19949)	+/.	./.	6:7152861	7:46614665	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000124782	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UNC13C	TMC4(94),MBOAT7(68)	+/.	./.	15:54450207	19:54173344	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000137766	.	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AL513321.1(21925),AL592466.1(602)	./.	./.	2:240393940	10:65270717	intergenic	intergenic	translocation	0	0	0	357	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(11),mismatches(13)	.	.	.
VEGFC	SULF2	-/.	-/.	4:176792486	20:47757536	5'UTR	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000150630	ENSG00000196562	.	.	downstream	upstream	mismatches(1)	.	.	.
PDGFC	FP236383.3	-/.	+/.	4:156862368	21:8442659	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000145431	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	DIP2A(27618),S100B(971)	./.	./.	2:218108703	21:46597633	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(5),mismatches(5)	.	.	.
5_8S_rRNA(2083),FP236383.3(121627)	5_8S_rRNA(3789),FP236383.3(119921)	./.	./.	21:8259016	21:8260722	intergenic	intergenic	inversion	0	0	0	5911	8	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLCO1B1	FP671120.4	+/.	+/.	12:21146487	21:8218218	intron	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	ENSG00000134538	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS24P8(33048),TMEM158(31243)	AC022031.2	./.	+/.	3:45193223	18:55644940	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000267284	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916411	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
AC025580.2	MACROD2	+/.	+/.	15:45462783	20:15209116	intron	intron	translocation/5'-5'	0	0	0	7	68	low	.	.	.	.	.	ENSG00000259354	ENSG00000172264	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
KRIT1	FP236383.3	-/.	+/.	7:92234877	21:8444816	CDS	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000001631	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
HYDIN2	PARD3	+/.	-/.	1:146551982	10:34185451	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000148498	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
UBE4B	OCRL	+/.	+/.	1:10159221	X:129560028	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000130939	ENSG00000122126	.	.	upstream	downstream	mismatches(1)	.	.	.
PDS5A	FP671120.4	-/.	+/.	4:39875782	21:8213338	intron	intron	translocation/3'-3'	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SERTAD2(533),RN7SL341P(65840)	BICC1	./.	+/.	2:64751538	10:58688003	intergenic	intron	translocation	0	0	0	0	87	low	.	.	.	.	.	.	ENSG00000122870	.	.	downstream	downstream	homopolymer(1)	.	.	.
RPS27AP16(328691),AC092125.2(253578)	FP671120.4	./.	+/.	16:61384655	21:8217542	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091167.2	GAPDHP16(18527),AF127577.4(25054)	+/.	./.	15:90270297	21:14793789	intron	intergenic	translocation	0	0	0	14	5	low	.	.	.	.	.	ENSG00000261147	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	5:175967559	15:45462583	intron	intron	translocation/5'-5'	0	0	0	67	23	low	.	.	.	.	.	ENSG00000051596	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
EPHA4	AP3M1(318),ADK(42)	-/.	./.	2:221548933	10:74151160	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000116106	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
HIVEP1	PLCB4	+/.	+/.	6:12040672	20:9168924	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000095951	ENSG00000101333	.	.	upstream	upstream	mismatches(1)	.	.	.
TEDC1	FP671120.4	+/.	+/.	14:105494501	21:8214795	exon	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000185347	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
NUDT3	FP236383.3	-/.	+/.	6:34315128	21:8400584	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000272325	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	ATP9B(2398),NFATC1(15171)	./.	./.	2:218108703	18:79380685	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(2)	.	.	.
EBF2(344),RNA5SP258(91123)	5_8S_rRNA(2081),FP236383.3(121629)	./.	./.	8:26045757	21:8259014	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),mismatches(3)	.	.	.
AP001652.1	FP671120.4	-/.	+/.	11:58919736	21:8214784	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000255523	ENSG00000278996	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
SLIT3	Z98755.1(65557),AL591387.1(513681)	-/.	./.	5:169074016	6:103069454	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184347	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SCRN1	AL451069.1(1777),LINC01165(683)	-/.	./.	7:29989908	10:132520144	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000136193	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL358053.1(206661),AL591644.1(221020)	AL358053.1(206670),AL591644.1(221011)	./.	./.	9:1756764	9:1756773	intergenic	intergenic	duplication/ITD	0	0	0	8	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PDS5A	CCDC136(8126),FLNC(148)	-/.	./.	4:39875783	7:128830258	intron	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143157	14:106419138	intron	intergenic	translocation	0	0	0	1124	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
DOCK4-AS1	DLG2	+/.	-/.	7:111818567	11:84052131	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225572	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104109.4	FP236383.3	-/.	+/.	5:134225648	21:8442058	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000273345	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
AL034405.1(15383),BCORL1(8196)	AL034405.1(15396),BCORL1(8183)	./.	./.	X:129972911	X:129972924	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP671120.4	5_8S_rRNA(2088),FP236383.3(121622)	+/.	./.	21:8220291	21:8259021	intron	intergenic	deletion/read-through	0	0	0	0	6	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01731	LINC01731	-/.	-/.	1:148280008	1:148280107	intron	intron	duplication/ITD	0	0	0	55	48	low	.	.	.	.	.	ENSG00000234283	ENSG00000234283	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC12A2	AC103796.1	+/.	-/.	5:128132315	11:27781140	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000064651	ENSG00000255496	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	FXNP1(22689),NRXN3(87406)	-/.	./.	10:104479906	14:78082967	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC01060	AC022826.2	+/.	-/.	4:188533877	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	ENSG00000258677	.	.	downstream	upstream	duplicates(5)	.	.	.
AL133304.3	FP671120.4	+/.	+/.	14:36002552	21:8206534	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000258342	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ERN2	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	16:23702061	21:8259010	intron	intergenic	translocation	0	0	0	8	5911	low	.	.	.	.	.	ENSG00000134398	.	.	.	downstream	upstream	mismatches	.	.	.
ERI3	CDH18	-/.	-/.	1:44320094	5:20271009	intron	intron	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000145526	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC079160.1	MAPKBP1	-/.	+/.	4:84219277	15:41818882	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000250546	ENSG00000137802	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CCNB2	AC025627.3	+/.	+/.	15:59122737	17:19601314	intron	exon	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000157456	ENSG00000266179	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
FP671120.7	CD55	-/-	+/+	21:8254770	1:207361333	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281383	ENSG00000196352	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093912.1(103819),AC073062.1(102171)	FP236383.3	./.	+/.	2:13435502	21:8441654	intergenic	intron	translocation	0	0	0	28	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(4)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396540	8:22396553	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(71),low_entropy(16)	.	.	.
CDNF	SPIRE2	-/.	+/.	10:14837792	16:89851914	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000185267	ENSG00000204991	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TENT2	AC109630.1	+/.	+/.	5:79670611	15:39489500	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164329	ENSG00000259269	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092170.1(239686),AC064856.1(115139)	RNU7-155P(125409),AC118653.1(172711)	./.	./.	2:117421248	17:71423627	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ACMSD	CCNT2-AS1	+/.	-/.	2:134845513	2:134845524	intron	intron	duplication/3'-3'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000224043	.	.	upstream	downstream	duplicates(1)	.	.	.
U3(104498),GPC1(41722)	MRPS36P5(24795),LINC02461(76134)	./.	./.	2:240393941	12:43079181	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
MBNL1	AL009177.1	+/.	+/.	3:152299298	6:14487262	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000152601	ENSG00000286277	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650927	21:8441663	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AC114321.1(205467),AC026403.1(21399)	GSE1	./.	+/.	5:166360906	16:85260115	intergenic	intron	translocation	0	0	0	10	19	low	.	.	.	.	.	.	ENSG00000131149	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP003390.1(4492),AP001994.1(77189)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744115	14:78082967	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
FAM156A	MT-RNR2	-/.	+/.	X:52944075	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000268350	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PCA3	LINC02745	+/.	-/.	9:76808400	11:42029389	intron	intron	translocation	0	0	0	6	9	low	.	.	.	.	.	ENSG00000225937	ENSG00000255300	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3852),GPN2(7824)	./.	./.	1:26868241	1:26868308	intergenic	intergenic	duplication/ITD	0	0	0	80	79	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(5)	.	.	.
FGFR1(15353),C8orf86(26647)	IL3RA	./.	+/.	8:38484187	X:1354867	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000185291	.	.	upstream	downstream	duplicates(7),mismatches(2)	.	.	.
ADGRD2	FP236383.3	+/.	+/.	9:124473541	21:8397829	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000180264	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GAU1	AC005833.1	-/.	+/.	12:4702127	12:4702200	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255639	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL355981.1	FP236383.3	-/.	+/.	1:86824099	21:8397829	intron	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	ENSG00000284846	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GMDS	DSCAS	-/.	+/.	6:1766539	18:31114660	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112699	ENSG00000265888	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ZNF665	SIM2	-/.	+/.	19:53186708	21:36720283	intron	3'UTR	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000197497	ENSG00000159263	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	ZIC5	+/.	-/.	2:32916532	13:99971192	intron	CDS	translocation/3'-3'	0	0	0	39	12	low	.	.	.	.	.	ENSG00000230876	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
AC009161.1(206442),AC009110.1(32184)	Z93403.1	./.	+/.	16:62564188	X:42277881	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000231772	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	5_8S_rRNA(1601),FP236383.3(122109)	-/.	./.	3:96617460	21:8258534	5'UTR	intergenic	translocation	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAM83B	AC093627.22	+/.	-/.	6:54859661	7:117611	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168143	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
SFN(3791),GPN2(7885)	SFN(3841),GPN2(7835)	./.	./.	1:26868247	1:26868297	intergenic	intergenic	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC105445.1(54671),CCSER1(73455)	DLG2	./.	-/.	4:90054080	11:84052131	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139383.1	FP671120.4	-/.	+/.	13:33517098	21:8214397	intron	intron	translocation/3'-3'	0	0	0	2	540	low	.	.	.	.	.	ENSG00000230490	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ROBO1	MT-RNR2	-/.	+/.	3:79166519	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000169855	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
WIPI2(6935),SLC29A4(33594)	KRT8P27(3758),GRPEL2P2(69547)	./.	./.	7:5240775	X:64628331	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02663(164937),LINC02670(15725)	DLG2	./.	-/.	10:10042997	11:85484194	intergenic	intron	translocation	0	0	0	5	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	DNAH14	+/.	+/.	1:225078776	1:225078785	intron	intron	duplication/ITD	0	0	0	47	38	low	.	.	.	.	.	ENSG00000185842	ENSG00000185842	.	.	upstream	downstream	low_entropy(1)	.	.	.
HYDIN2	SLC6A12	+/.	-/.	1:146551982	12:199334	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000111181	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC00871	PWRN4	+/.	+/.	14:46105933	15:23982639	intron	intron	translocation	0	0	0	25	0	low	.	.	.	.	.	ENSG00000258700	ENSG00000260232	.	.	upstream	downstream	mismatches(2)	.	.	.
FBRSL1	FP671120.4	+/.	+/.	12:132524117	21:8214801	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112787	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AP001823.1(3430),ELMOD1(758)	AP001823.1(3527),ELMOD1(661)	./.	./.	11:107590333	11:107590430	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	10:44886344	10:44886355	intron	intron	duplication/ITD	0	0	0	12	2	low	.	.	.	.	.	ENSG00000224812	ENSG00000224812	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	AP003390.1(4502),AP001994.1(77179)	-/.	./.	6:42262463	11:119744125	intron	intergenic	translocation	0	0	0	2363	3002	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	low_entropy	.	.	.
MAFG-DT	5_8S_rRNA(18845)	+/+	./-	17:81928147	14:16038627	exon	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	TIAM1	+/.	-/.	21:8397828	21:31286127	intron	intron	inversion	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000156299	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.8(8313),MIR6724-2(145)	FP236383.3	./.	+/.	21:8249360	21:8397825	intergenic	intron	deletion/read-through	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF638	FP236383.3	+/.	+/.	2:71338685	21:8437076	intron	intron	translocation	0	0	0	2	55	low	.	.	.	.	.	ENSG00000075292	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC25A48	FP236383.3	+/.	+/.	5:135775888	21:8438953	intron	intron	translocation	0	0	0	1	139	low	.	.	.	.	.	ENSG00000145832	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216775	21:8442147	intron	intron	inversion/3'-3'	0	0	0	2	8	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01756(15349),AL671862.1(122730)	MAP4K4	./.	+/.	1:29365463	2:101785698	intergenic	intron	translocation	0	0	0	0	496	low	.	.	.	.	.	.	ENSG00000071054	.	.	downstream	upstream	mismatches(1)	.	.	.
GTPBP3(6431),PLVAP(2288)	GTPBP3(6514),PLVAP(2205)	./.	./.	19:17349162	19:17349245	intergenic	intergenic	duplication/ITD	0	0	0	11	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL035078.4	FP236383.3	+/.	+/.	11:31981345	21:8444809	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000285283	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(90276),AL390061.1(223695)	LINC00189	./.	+/.	10:36716414	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
LRRFIP1	ZNF462	+/.	+/.	2:237784949	9:106877177	intron	intron	translocation/3'-3'	0	0	0	67	3	low	.	.	.	.	.	ENSG00000124831	ENSG00000148143	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
AC023347.1(105257),YWHAZP2(108186)	FP671120.4	./.	+/.	2:126449249	21:8206534	intergenic	intron	translocation	0	0	0	2	9	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ABR	FP236383.3	-/.	+/.	17:1124172	21:8397815	intron	intron	translocation	0	0	0	8	6042	low	.	.	.	.	.	ENSG00000159842	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
AC079943.2	FP236383.3	-/.	+/.	3:158007165	21:8437150	intron	intron	translocation/3'-3'	0	0	0	0	30	low	.	.	.	.	.	ENSG00000242536	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
SDHA	AC019055.1(21875),CISD1P1(86798)	+/+	./-	5:230939	2:19739451	CDS	intergenic	translocation	0	0	0	0	8	low	.	.	FAD_binding_domain(54%)|	.	.	ENSG00000073578	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC023141.7(4271051),AC128676.1(167264)	C12orf65	./.	+/.	7:62108097	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000130921	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC092757.2	MTRNR2L10	+/.	-/.	15:59122737	X:55181913	intron	3'UTR	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000259732	ENSG00000256045	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
ASTN1	FP671120.4	-/.	+/.	1:176897681	21:8214787	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000152092	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	GSE1	./.	+/.	1:146273933	16:85260115	intergenic	intron	translocation	0	0	0	9	19	low	.	.	.	.	.	.	ENSG00000131149	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNH8	PLA2G7	+/.	-/.	3:19589994	6:46734491	intergenic	intron	translocation	0	0	0	0	37	low	.	.	.	.	.	ENSG00000183960	ENSG00000146070	.	.	downstream	downstream	low_entropy	.	.	.
PAX5	FP236383.3	-/.	+/.	9:36881658	21:8444186	intron	intron	translocation/3'-3'	0	0	0	0	214	low	.	.	.	.	.	ENSG00000196092	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
OPCML	EVI5L	-/.	+/.	11:133286609	19:7854655	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000183715	ENSG00000142459	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE3C(2773),AC004975.2(9393)	AP001781.2	./.	-/.	7:157272143	11:111871461	intergenic	CDS	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000258529	.	.	downstream	downstream	mismatches(1)	.	.	.
MLLT10(12025),DNAJC1(893)	SLC24A3	./.	+/.	10:21755655	20:19561363	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000185052	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	AF064860.1	-/.	+/.	10:104479908	21:39679803	intron	intron	translocation/3'-3'	0	0	0	1761	34	low	.	.	.	.	.	ENSG00000225768	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	GSE1	./.	+/.	1:148724716	16:85260115	intergenic	intron	translocation	0	0	0	4	19	low	.	.	.	.	.	.	ENSG00000131149	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNNA2	CLPTM1	+/.	+/.	2:80012176	19:44984543	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000066032	ENSG00000104853	.	.	downstream	upstream	mismatches(1)	.	.	.
PAX5	FP236383.3	-/.	+/.	9:36881658	21:8399951	intron	intron	translocation/3'-3'	0	0	0	0	205	low	.	.	.	.	.	ENSG00000196092	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL358053.1(422455),AL591644.1(5226)	FBXW5	./.	-/.	9:1972558	9:136943086	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000159069	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RAMP3(65702),AC073968.2(16677)	TAFA5	./.	+/.	7:45252004	22:48741205	intergenic	intron	translocation	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000219438	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01320	FP671120.4	+/.	+/.	2:33767498	21:8217335	intron	intron	translocation	0	0	0	72	4	low	.	.	.	.	.	ENSG00000228262	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
EXOSC7	FP236383.3	+/.	+/.	3:44976203	21:8394739	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000075914	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC013460.1(78042),RNU6ATAC37P(48255)	NDUFA5P5(186978),ICE2P2(159762)	./.	./.	2:7528586	3:88788380	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP3K11	TBC1D17	-/-	+/-	11:65611799	19:49888369	exon	intron	translocation/5'-5'	0	0	0	1	3	low	.	.	Protein_kinase_domain(50%),Variant_SH3_domain(100%)|	.	.	ENSG00000173327	ENSG00000104946	.	.	upstream	downstream	mismatches(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	7:35674405	7:35674418	intron	intron	duplication/ITD	0	0	0	21	0	low	.	.	.	.	.	ENSG00000122557	ENSG00000122557	.	.	upstream	downstream	duplicates(12),low_entropy(1)	.	.	.
PAX5	BICC1	-/.	+/.	9:37009556	10:58707586	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000196092	ENSG00000122870	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2078),FP236383.3(121632)	+/.	./.	21:8205791	21:8259011	intron	intergenic	deletion/read-through	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	duplicates(1)	.	.	.
BICC1	DIP2A(27618),S100B(971)	+/.	./.	10:58688003	21:46597633	intron	intergenic	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	.	.	.	downstream	upstream	mismatches(3)	.	.	.
NRIP3	MGAT3	-/-	+/+	11:9003964	22:39479096	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Glycosyltransferase_family_17(100%)	.	.	ENSG00000175352	ENSG00000128268	.	.	upstream	upstream	mismatches(1)	.	.	.
OR2T27	AC008124.1(1598),ARID2(333)	-/.	./.	1:248653872	12:45729373	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000187701	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC080013.1	AMBP(3586),KIF12(4212)	+/.	./.	3:158750097	9:114081914	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000240207	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KYNU(33029),ARHGAP15(2500)	ZNF274	./.	+/.	2:143088862	19:58200776	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000171606	.	.	downstream	upstream	mismatches(1)	.	.	.
IL3RA	ASMTL-AS1	+/.	+/.	X:1354867	X:1411218	intron	intron	deletion/read-through	0	0	0	18	0	low	.	.	.	.	.	ENSG00000185291	ENSG00000236017	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
LINC01343(21402),AL513479.1(147630)	PLXNA4	./.	-/.	1:38236208	7:132611063	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000221866	.	.	downstream	upstream	mismatches(1)	.	.	.
ABCB1	TLE4	-/.	+/.	7:87589089	9:79572888	intron	intron	translocation/5'-5'	0	0	0	0	12	low	.	.	.	.	.	ENSG00000085563	ENSG00000106829	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC013460.1(78046),RNU6ATAC37P(48251)	BPY2C	./.	-/.	2:7528590	Y:25044573	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000185894	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
IGSF21	EXPH5	+/.	-/.	1:18369039	11:108554924	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000117154	ENSG00000110723	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683457	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SNX16	AP005436.1	-/.	-/.	8:81842457	11:88092427	intron	intron	translocation	0	0	0	67	1059	low	.	.	.	.	.	ENSG00000104497	ENSG00000255102	.	.	upstream	downstream	mismatches	.	.	.
FP236383.3	HS6ST2	+/.	-/.	21:8438701	X:132708551	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000280441	ENSG00000171004	.	.	upstream	downstream	mismatches(1)	.	.	.
ST13P7(72612),EXOC4(9947)	ST13P7(72621),EXOC4(9938)	./.	./.	7:133243126	7:133243135	intergenic	intergenic	duplication/ITD	0	0	0	24	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
Y_RNA(263921),AC026320.2(47191)	ANKRD11	./.	-/.	3:191905158	16:89408492	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000167522	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ATP7B	PCNT	-/.	+/.	13:51981516	21:46422072	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000123191	ENSG00000160299	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262587	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
FP236383.5	CDH12	-/-	-/+	21:8437834	5:22323469	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281181	ENSG00000154162	.	.	upstream	upstream	mismatches(1)	.	.	.
CT867976.1(150832),AC138776.1(197048)	TTTY2B	./.	-/.	22:11630475	Y:6414449	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000212856	.	.	upstream	downstream	mismatches(1)	.	.	.
CNKSR3	NTRK2	-/.	+/.	6:154494759	9:84975073	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153721	ENSG00000148053	.	.	downstream	upstream	mismatches(1)	.	.	.
DPP6	MSI2	+/.	+/.	7:154797635	17:57361124	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130226	ENSG00000153944	.	.	upstream	upstream	mismatches(1)	.	.	.
ACSL6	PTPRT	-/.	-/.	5:132011045	20:42944229	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000164398	ENSG00000196090	.	.	downstream	upstream	mismatches(1)	.	.	.
CRADD	AC135983.1	+/.	-/.	12:93846253	15:32415370	intron	intron	translocation	0	0	0	24	2	low	.	.	.	.	.	ENSG00000169372	ENSG00000215304	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	HBB	./.	-/.	6:168345669	11:5225537	intergenic	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	.	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR6724-2(404),FP671120.3(60)	FP236383.3	./.	+/.	21:8250000	21:8442046	intergenic	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
CNTNAP3P2	CLBA1	+/.	+/.	9:67208834	14:105000768	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000276386	ENSG00000140104	.	.	upstream	downstream	mismatches(1)	.	.	.
KIAA2012-AS1	FP671120.3(3894),FP671120.7(549)	-/.	./.	2:202083780	21:8254043	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
MTMR12	ADK	-/.	+/.	5:32271164	10:74578309	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150712	ENSG00000156110	.	.	upstream	upstream	mismatches(1)	.	.	.
LCORL	RGMB	-/.	+/.	4:17910246	5:98771438	intron	intron	translocation/3'-3'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000178177	ENSG00000174136	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TNIK	CBWD6	-/.	-/.	3:171458323	9:41189379	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154310	ENSG00000215126	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL592402.1	PRKCQ	+/.	-/.	1:213500382	10:6580281	intron	5'UTR	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000225233	ENSG00000065675	.	.	downstream	downstream	mismatches(1)	.	.	.
STK10	ATP6V1D	-/.	-/.	5:172090368	14:67301864	intron	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000072786	ENSG00000100554	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2081),FP236383.3(121629)	DMRTC1	./.	-/.	21:8259014	X:72887450	intergenic	intron	translocation	0	0	0	5911	0	low	.	.	.	.	.	.	ENSG00000269502	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR3148(37078),MAP2K1P1(33287)	YBX2P2	./.	-/.	8:29994426	15:93066409	intergenic	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000258611	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPS6KA2	CABIN1	-/.	+/.	6:166893131	22:24067426	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000071242	ENSG00000099991	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22685),NRXN3(87410)	./.	./.	14:78082946	14:78082963	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
AC139365.1(221268),AC118650.1(2132945)	FP671120.4	./.	+/.	8:43895859	21:8214799	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL035078.4	AAMDC	+/.	+/.	11:31981345	11:77886439	intron	intron	deletion	0	0	0	0	5	low	.	.	.	.	.	ENSG00000285283	ENSG00000087884	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP2R5A	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	1:212286030	21:8255907	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000066027	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RARB	FP236383.3	+/.	+/.	3:25373702	21:8392868	intron	intron	translocation	0	0	0	1	43	low	.	.	.	.	.	ENSG00000077092	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC091078.1	FP236383.3	+/.	+/.	15:93232876	21:8442040	intron	intron	translocation/3'-3'	0	0	0	8	6003	low	.	.	.	.	.	ENSG00000257060	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
TMEM72-AS1	TMEM72-AS1	-/.	-/.	10:44886343	10:44886354	intron	intron	duplication/ITD	0	0	0	12	2	low	.	.	.	.	.	ENSG00000224812	ENSG00000224812	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683470	15:81683479	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
Y_RNA(50836),LIMCH1(5434)	MT-RNR2	./.	+/.	4:41354173	MT:2230	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC090579.1	HYDIN	-/.	-/.	8:106534226	16:71158143	intron	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	ENSG00000253582	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
COL11A1(227570),AC095032.2(78437)	PAPPA(3962),ASTN2(18942)	./.	./.	1:103336442	9:116406283	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01495	PHACTR3	-/.	+/.	11:22480925	20:59743988	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255323	ENSG00000087495	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00189	FIRRE	+/.	-/.	21:29263475	X:131708312	intron	intron	translocation/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000215533	ENSG00000213468	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104435.2	AC104435.2	-/.	-/.	3:72539499	3:72539550	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000244345	ENSG00000244345	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC079943.2	FP236383.3	-/.	+/.	3:158007165	21:8392940	intron	intron	translocation/3'-3'	0	0	0	0	32	low	.	.	.	.	.	ENSG00000242536	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
NEDD4L(2387),AC105105.2(12838)	NHSL2	./.	+/.	18:58403927	X:71988167	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000204131	.	.	downstream	downstream	mismatches(1)	.	.	.
LPP	LINC02745	+/.	-/.	3:188587619	11:42029390	intron	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000145012	ENSG00000255300	.	.	downstream	upstream	mismatches(1)	.	.	.
P4HA2	FP236383.3	-/.	+/.	5:132228591	21:8442045	intron	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000072682	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
H3C10	UBE2W	+/.	-/.	6:27810928	8:73820101	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	ENSG00000104343	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
EPB41L4A	HYDIN	-/.	-/.	5:112318357	16:71158143	intron	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	ENSG00000129595	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	AC020916.1	./.	-/.	3:35255769	19:13829913	intergenic	exon	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000267519	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
KYNU(33029),ARHGAP15(2500)	ANKMY2	./.	-/.	2:143088862	7:16603057	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000106524	.	.	downstream	downstream	mismatches(1)	.	.	.
NDUFAF4(8228),RN7SL509P(8580)	KPNA3	./.	-/.	6:96906119	13:49727703	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000102753	.	.	upstream	downstream	mismatches(1)	.	.	.
B3GALNT1	FP671120.4	-/.	+/.	3:161095878	21:8214798	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000169255	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
XPC	LINC02864	-/.	-/.	3:14178231	18:73168244	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000154767	ENSG00000263711	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
GPC3	GPC3	-/.	-/.	X:133661569	X:133661578	intron	intron	duplication/ITD	0	0	0	143	51	low	.	.	.	.	.	ENSG00000147257	ENSG00000147257	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
DHFR	LAMA3	-/.	+/.	5:80650924	18:23756906	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000053747	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
SGMS1-AS1	5_8S_rRNA(2078),FP236383.3(121632)	+/.	./.	10:50624032	21:8259011	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000226200	.	.	.	upstream	upstream	mismatches	.	.	.
C16orf95	SHISA9	-/-	+/+	16:87317152	16:12940774	CDS	intron	inversion	0	0	0	0	0	low	.	.	|Wnt_and_FGF_inhibitory_regulator(13%)	.	.	ENSG00000260456	ENSG00000237515	.	.	upstream	upstream	mismatches(1)	.	.	.
NOTCH4	ERN2	-/-	-/-	6:32195774	16:23702061	CDS	intron	translocation	0	0	0	1	8	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Calcium-binding_EGF_domain(100%),EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),LNR_domain(100%),NOTCH_protein(100%)|Protein_kinase_domain(100%),Ribonuclease_2-5A(100%)	.	.	ENSG00000204301	ENSG00000134398	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL9P15(50532),AC073359.2(99365)	AL031600.2	./.	-/.	3:154727651	16:1471971	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261430	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	AL008720.2(33562),Z72006.1(36701)	+/.	./.	21:8444185	22:48366761	intron	intergenic	translocation	0	0	0	214	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025580.2	MACROD2	+/.	+/.	15:45463196	20:15209116	intron	intron	translocation/5'-5'	0	0	0	37	68	low	.	.	.	.	.	ENSG00000259354	ENSG00000172264	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
5_8S_rRNA(2103),FP236383.3(121607)	FP236383.3	./.	+/.	21:8259036	21:8397815	intergenic	intron	deletion/read-through	0	0	0	5782	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
AC010967.1(152956),AC069157.2(356039)	AP005270.1(154054),AP001095.1(637)	./.	./.	2:53114408	18:7455207	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
B3GNT7(4009),ZBTB8OSP2(28750)	CCDC178	./.	-/.	2:231405173	18:32975571	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
MORN1	FP671120.4	-/.	+/.	1:2342558	21:8214780	intron	intron	translocation	0	0	0	4	6035	low	.	.	.	.	.	ENSG00000116151	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
SSRP1	FP671120.7(393),5_8S_rRNA(874)	-/.	./.	11:57335798	21:8255907	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000149136	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
HFM1	UBBP4	-/.	+/.	1:91387408	17:22095184	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000162669	ENSG00000263563	.	.	downstream	upstream	mismatches(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749069	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DRD5P2	FP671120.4	-/-	+/-	1:144276692	21:8214713	exon	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000175658	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4363),AP001994.1(77318)	AP003390.1(4378),AP001994.1(77303)	./.	./.	11:119743986	11:119744001	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(66),low_entropy(56)	.	.	.
FP671120.4	GNL3L	+/.	+/.	21:8206534	X:54578338	intron	intron	translocation	0	0	0	9	42	low	.	.	.	.	.	ENSG00000278996	ENSG00000130119	.	.	upstream	downstream	mismatches(2)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8206527	21:8438951	intron	intron	deletion/read-through	0	0	0	4	139	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	1:208413786	15:45462785	intergenic	intron	translocation	0	0	0	68	7	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
Metazoa_SRP(5472),Y_RNA(20729)	DLG2	./.	-/.	10:21460987	11:85484189	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRR(12527),AC025174.1(5740)	AL359636.2	./.	+/.	5:7918552	9:122558261	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000234156	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NPHP4	FBXW8	-/-	+/-	1:5886541	12:116958533	3'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131697	ENSG00000174989	.	.	upstream	downstream	mismatches(1)	.	.	.
BICC1	NUDT13	+/.	+/.	10:58688003	10:73120138	intron	CDS	deletion	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000166321	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MCF2L	ZNF665	+/.	-/.	13:113065912	19:53186709	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000126217	ENSG00000197497	.	.	upstream	downstream	mismatches(1)	.	.	.
TDO2	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	4:155871604	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000151790	.	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
AL606753.2(143090),LINC01735(192807)	AL606753.2(143119),LINC01735(192778)	./.	./.	1:208413757	1:208413786	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
WDR13	CARD11	+/-	-/-	X:48597824	7:2928698	5'UTR	CDS/splice-site	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000101940	ENSG00000198286	.	.	upstream	downstream	mismatches(1)	.	.	.
FIGNL2	GPRC5B	-/-	-/-	12:51846742	16:19884738	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	|7_transmembrane_sweet-taste_receptor_of_3_GCPR(100%)	.	.	ENSG00000261308	ENSG00000167191	.	.	upstream	downstream	mismatches(1)	.	.	.
SMYD3	PDS5A	-/.	-/.	1:246006332	4:39875783	intron	intron	translocation/3'-3'	0	0	0	4	11	low	.	.	.	.	.	ENSG00000185420	ENSG00000121892	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MTMR12	STK10	-/.	-/.	5:32271163	5:172060094	intron	intron	inversion/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000150712	ENSG00000072786	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683460	15:81683469	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
PTPRD	ATP9B(2396),NFATC1(15173)	-/.	./.	9:10556368	18:79380683	intron	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000153707	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	AP001599.1	+/.	+/.	21:8214402	21:26914103	intron	intron	duplication	0	0	0	8	167	low	.	.	.	.	.	ENSG00000278996	ENSG00000223563	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC018462.2(24442),B3GNT2(510)	AP001599.1	./.	+/.	2:62195605	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
IGF2R	IGF2R	+/+	+/+	6:160100739	6:160100725	5'UTR	5'UTR	duplication/ITD	0	0	0	0	2	low	.	.	Cation-independent_mannose-6-phosphate_receptor_repeat(100%),Fibronectin_type_II_domain(100%)|	.	.	ENSG00000197081	ENSG00000197081	.	.	downstream	upstream	duplicates(1),low_entropy(1)	.	.	.
RBM34	NPAS3	-/.	+/.	1:234997587	14:33490812	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188739	ENSG00000151322	.	.	upstream	upstream	mismatches(1)	.	.	.
SNAP91	SNAP91	-/.	-/.	6:83556343	6:83556356	intron	intron	duplication/ITD	0	0	0	7	5	low	.	.	.	.	.	ENSG00000065609	ENSG00000065609	.	.	upstream	downstream	low_entropy(1)	.	.	.
GRIK2	GRIK2	+/.	+/.	6:101955578	6:101955591	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000164418	ENSG00000164418	.	.	upstream	downstream	low_entropy(1)	.	.	.
NFE2L1	DIPK1A	+/+	-/-	17:48059602	1:92862797	CDS	intron	translocation	0	0	0	3	0	low	.	.	bZIP_Maf_transcription_factor(100%)|N-term_cysteine-rich_ER__FAM69(65%),Protein-kinase_domain_of_FAM69(100%)	.	.	ENSG00000082641	ENSG00000154511	.	.	downstream	downstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	SIPA1L3	./.	+/.	2:218108703	19:38082543	intergenic	CDS	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000105738	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.4(3814),FP671120.10(3894)	FP236383.3	./.	+/.	21:8231460	21:8442894	intergenic	intron	deletion/read-through	0	0	0	0	60	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(5),mismatches(5)	.	.	.
TNIK	CBWD1	-/.	-/.	3:171458323	9:179090	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154310	ENSG00000172785	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GLYATL1	FP236383.3	+/.	+/.	11:58919736	21:8397818	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000166840	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
AC106818.1(8857),FAM172A(5270)	SLC17A9(8692),BHLHE23(27650)	./.	./.	5:93612455	20:62978277	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LMCD1-AS1	MATR3	-/.	+/.	3:8367209	5:139294442	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227110	ENSG00000015479	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	ATP1B4	+/.	+/.	11:47233105	X:120373888	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000101892	.	.	downstream	upstream	duplicates(3)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683460	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
LGALS4	SUPT5H	-/.	+/.	19:38803997	19:39458236	intron	exon	deletion/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000171747	ENSG00000196235	.	.	downstream	upstream	duplicates(1)	.	.	.
MAP3K12	TSPEAR(11728),UBE2G2(45280)	-/.	./.	12:53493160	21:44723300	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000139625	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02469	RN7SKP263(6593),AC123567.1(124437)	+/.	./.	4:79684911	12:94015640	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248408	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC106886.2	WIPF2	+/.	+/.	16:30749091	17:40255775	intron	intron	translocation	0	0	0	221	0	low	.	.	.	.	.	ENSG00000260899	ENSG00000171475	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116317.1	FP236383.3	-/-	+/+	4:6307991	21:8442045	exon	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000286176	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
NUP210	AC079772.1	-/.	+/.	3:13366002	4:33652318	CDS	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000132182	ENSG00000288321	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022335.1	CEACAM21	+/.	+/.	12:21146487	19:41564259	intron	intron	translocation/5'-5'	0	0	0	7	5	low	.	.	.	.	.	ENSG00000257062	ENSG00000007129	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00866	ANKRD11	-/.	-/.	10:97837187	16:89314543	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227356	ENSG00000167522	.	.	upstream	downstream	mismatches(1)	.	.	.
RP1(43575),AC084834.1(152290)	AL163541.1	./.	-/.	8:54915295	13:109602694	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000285534	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005242.4(3766),AP005242.2(6974)	AP005242.4(3777),AP005242.2(6963)	./.	./.	18:14997001	18:14997012	intergenic	intergenic	duplication/ITD	0	0	0	25	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479898	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214791	21:8446136	intron	intron	inversion/3'-3'	0	0	0	5263	11	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
HOXD3	AC008878.3	+/.	+/.	2:176158426	19:7469138	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000128652	ENSG00000268861	.	.	downstream	upstream	mismatches(1)	.	.	.
AC233263.7(1130482),AC233266.1(80297)	AC027612.2	./.	-/.	2:91498181	2:91686303	intergenic	intron	deletion/read-through	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000230572	.	.	downstream	upstream	homopolymer(1)	.	.	.
HAND2	BICC1	-/.	+/.	4:173529804	10:58688003	5'UTR	intron	translocation	0	0	0	2	87	low	.	.	.	.	.	ENSG00000164107	ENSG00000122870	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01060	FP236383.3	+/.	+/.	4:188533876	21:8394740	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000249378	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
U3(104498),GPC1(41722)	ZNF827	./.	-/.	2:240393941	4:145799653	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000151612	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01381(6971),DNMT3A(11682)	FP236383.3	./.	+/.	2:25216173	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262466	6:42262483	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(14),low_entropy(22),merge_adjacent	.	.	.
CNTNAP3C(7628),AL935212.3(121155)	AC104574.2	./.	-/.	9:61460658	15:61611250	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000259616	.	.	upstream	downstream	mismatches(1)	.	.	.
RN7SL167P(47384),AP002856.3(135209)	AL138701.1(32795),AL138701.2(19854)	./.	./.	11:131051813	13:105930438	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(9159),CDKAL1(25022)	LINC02741	./.	-/.	6:20509435	11:41542520	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000255388	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNMB2	AC117457.1	+/.	+/.	3:178655090	3:178655101	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197584	ENSG00000275163	.	.	upstream	downstream	low_entropy(1)	.	.	.
PCA3	GPC5	+/.	+/.	9:76808399	13:91695714	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000225937	ENSG00000179399	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CHST15(269178),OAT(34527)	5_8S_rRNA(2090),FP236383.3(121620)	./.	./.	10:124362776	21:8259023	intergenic	intergenic	translocation	0	0	0	5	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
UBE2W	TCF12	-/.	+/.	8:73820119	15:57216569	intron	intron	translocation/3'-3'	0	0	0	10	26	low	.	.	.	.	.	ENSG00000104343	ENSG00000140262	.	.	downstream	upstream	duplicates(9),mismatches(3)	.	.	.
RPS24P8(33048),TMEM158(31243)	TCF4	./.	-/.	3:45193223	18:55644940	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000196628	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL135923.2(21358),PTPRD(331664)	FP671120.4	./.	+/.	9:7982582	21:8214396	intergenic	intron	translocation	0	0	0	2	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683464	15:81683473	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(2)	.	.	.
CAST	5_8S_rRNA(2083),FP236383.3(121627)	+/.	./.	5:96664239	21:8259016	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000153113	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MALRD1	FP236383.3	+/.	+/.	10:19462346	21:8442058	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000204740	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
UTRN	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	6:144823834	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000152818	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DYNLL2	RNF43	+/.	-/.	17:58083857	17:58385558	intron	intron	duplication/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000264364	ENSG00000108375	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	GRIK1(69580),AF096876.1(80104)	+/.	./.	21:8214783	21:30009613	intron	intergenic	inversion	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches	.	.	.
MICALL2	5_8S_rRNA(2090),FP236383.3(121620)	-/-	./+	7:1444968	21:8259023	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	Calponin_homology_(CH)_domain(100%),LIM_domain(100%)|	.	.	ENSG00000164877	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AL606489.1	ZIC5	+/.	-/.	1:204412055	13:99971192	intron	CDS	translocation/3'-3'	0	0	0	3	12	low	.	.	.	.	.	ENSG00000226330	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8441654	MT:1800	intron	exon	translocation/3'-3'	0	0	0	546	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
MEIKIN	CFAP58	-/.	+/.	5:131885425	10:104396370	intron	intron	translocation/3'-3'	0	0	0	58	558	low	.	.	.	.	.	ENSG00000239642	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
FAT1(23081),AC108865.1(141166)	LINC02098(161794),ETS1(55526)	./.	./.	4:186749803	11:128403235	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL606468.1(18423),LINC02608(16596)	THRAP3P2(6696),SLCO3A1(103057)	./.	./.	1:212208682	15:91750651	intergenic	intergenic	translocation	0	0	0	50	21	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AC084030.1(20691),AC012063.1(135743)	AL008718.2(4880),AL008718.1(7134)	./.	./.	2:236775054	22:45268465	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM225B	CLPTM1	+/+	+/+	7:99598377	19:44984543	5'UTR	exon	translocation	0	0	0	0	0	low	.	.	|Cleft_lip_and_palate_transmembrane_protein_1_(CLPTM1)(68%)	.	.	ENSG00000244219	ENSG00000104853	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01121	LINC01121	-/.	-/.	2:45297823	2:45297883	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000205054	ENSG00000205054	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785688	6:42262463	intron	intron	translocation	0	0	0	496	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
RPL7P59(171589),AC004911.1(56984)	PDYN-AS1	./.	+/.	7:145212530	20:1959166	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000233896	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC008083.2(38156),PPIAP45(24437)	RGS6	./.	+/.	12:47317177	14:72111284	intergenic	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	.	ENSG00000182732	.	.	upstream	downstream	mismatches(1)	.	.	.
MYT1	FP236383.3	+/.	+/.	20:64118266	21:8442144	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000196132	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
NRAP	XRCC6P2(65223),MAMLD1(63303)	-/.	./.	10:113634810	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197893	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNF43	FTHL17(104),DMD(25532)	-/.	./.	17:58385557	X:31072145	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000108375	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNU7-55P	5_8S_rRNA(2096),FP236383.3(121614)	-/-	./+	8:9072505	21:8259029	exon	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000239078	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC004687.2	FP236383.3	-/.	+/.	17:58385557	21:8396371	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
Z98751.2(5400),AL135931.1(146)	LINC00470	./.	-/.	1:171767924	18:1313962	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000132204	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CBWD6	RBM38(6607),AL109955.1(26802)	-/.	./.	9:41189379	20:57415940	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000215126	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AMD1P1(55145),AL590032.1(140926)	ABR	./.	-/.	10:20406245	17:1022426	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000159842	.	.	upstream	upstream	mismatches(1)	.	.	.
ABR	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	17:1124167	21:8259010	intron	intergenic	translocation	0	0	0	8	5911	low	.	.	.	.	.	ENSG00000159842	.	.	.	upstream	upstream	mismatches	.	.	.
DHFR	AL358033.1(24237),FTLP19(41256)	-/.	./.	5:80651216	10:16030160	intron	intergenic	translocation	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	duplicates(6),mismatches(1)	.	.	.
AL135923.2(21358),PTPRD(331664)	DLG2	./.	-/.	9:7982582	11:85484188	intergenic	intron	translocation	0	0	0	2	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
AL512770.1	AC013489.2(9288),LINC01586(7716)	-/-	./+	10:12245743	15:88577850	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228302	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
RPL6P21(23501),DGKB(50168)	ZHX3	./.	-/.	7:14094881	20:41287138	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000174306	.	.	upstream	downstream	mismatches(1)	.	.	.
TSPOAP1-AS1	FP236383.3	+/.	+/.	17:58385559	21:8440593	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LARGE1	MED12(2051),NLGN3(326)	-/.	./.	22:33771303	X:71144505	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000133424	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC079612.1(1174),AC079612.2(38430)	FP236383.3	./.	+/.	2:239587268	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS7P4(20384),COX6B1P7(18949)	PAX3	./.	-/.	1:68263439	2:222298765	intergenic	5'UTR	translocation	0	0	0	3	17	low	.	.	.	.	.	.	ENSG00000135903	.	.	upstream	downstream	homopolymer(1)	.	.	.
DLC1	PIN1	-/.	+/.	8:13276801	19:9842759	5'UTR	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000164741	ENSG00000127445	.	.	downstream	downstream	mismatches(1)	.	.	.
MRPL13	AC023421.2	-/.	-/.	8:120418520	18:45711794	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172172	ENSG00000288545	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
EPHA5	EPHA5	-/.	-/.	4:65401905	4:65401918	intron	intron	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	ENSG00000145242	ENSG00000145242	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
SH3PXD2B	CCDC6	-/.	-/.	5:172340336	10:59900208	intron	intron	translocation	0	0	0	4	13	low	.	.	.	.	.	ENSG00000174705	ENSG00000108091	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683457	15:81683470	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
PLXNA4	AC093484.3	-/.	-/.	7:132611063	17:16382479	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000221866	ENSG00000265401	.	.	upstream	downstream	mismatches(1)	.	.	.
GAPDHP36(89381),RALBP1P1(20618)	OR6C70	./.	-/.	3:180302489	12:55469553	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000184954	.	.	upstream	downstream	mismatches(1)	.	.	.
AC118650.1(11670),HSPA8P13(508527)	FP671120.4	./.	+/.	8:46040562	21:8214785	intergenic	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
TRRAP	KIF26B	+/+	+/-	7:98949505	1:245500131	CDS	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000196367	ENSG00000162849	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
TENM4(123952),AP001978.1(39985)	WASHC3	./.	-/.	11:79564982	12:102034891	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000120860	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01470	FP236383.3	-/.	+/.	5:153185386	21:8397818	intron	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000249484	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AC010996.1(82278),AC025039.1(148971)	INTS6-AS1(5407),RNU6-65P(5327)	./.	./.	10:56446992	13:51560085	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
COL27A1	DHRS2(46906),AL160237.1(7252)	+/.	./.	9:114183192	14:23692545	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000196739	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005203.1(62542),LINC01892(14092)	TAF1	./.	+/.	18:5067079	X:71366607	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000147133	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC015631.1	MAP1LC3BP1(11862),SLC24A2(31066)	-/.	./.	4:133867492	9:19476386	intergenic	intergenic	translocation	0	0	0	11	4	low	.	.	.	.	.	ENSG00000251199	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RN7SL547P(135273),AL031679.1(62674)	FP671120.4	./.	+/.	20:7769124	21:8217537	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
BTAF1	LINC02864	+/.	-/.	10:91950166	18:73168244	intron	intron	translocation/5'-5'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000095564	ENSG00000263711	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PDS5A	5_8S_rRNA(619),FP236383.3(123091)	-/.	./.	4:39875784	21:8257552	intron	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CLK2	SEMA6D	-/.	+/.	1:155273349	15:47731330	5'UTR	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000176444	ENSG00000137872	.	.	downstream	downstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626664	X:18626675	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(8),low_entropy(3),merge_adjacent	.	.	.
HNRNPA3P8(76939),AC108740.1(147908)	FP236383.3	./.	+/.	3:80294173	21:8442659	intergenic	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL21P12(17605),GCSHP2(17191)	EIF4ENIF1	./.	-/.	14:103167013	22:31472559	intergenic	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000184708	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02128	FP671120.4	+/.	+/.	16:50895511	21:8216628	intron	intron	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000261241	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
C4orf54(33072),DAPP1(129107)	ZIC3	./.	+/.	4:99687720	X:137574881	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000156925	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257423	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214807	21:8397815	intron	intron	deletion/read-through	0	0	0	6035	6042	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
AC109466.1	TPD52L2	+/.	+/.	5:164476682	20:63886253	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241956	ENSG00000101150	.	.	upstream	downstream	mismatches(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	TTTY14	./.	-/.	5:23949377	Y:19076775	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000176728	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC069114.1(202218),CBLN2(389885)	AC069114.1(202266),CBLN2(389837)	./.	./.	18:72146795	18:72146843	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749072	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
HLA-DRB5	RNY1P8(10067),AL162376.1(161704)	-/.	./.	6:32519404	13:73237327	CDS	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000198502	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FOXN3	FOXN3	-/.	-/.	14:89288666	14:89288725	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000053254	ENSG00000053254	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL135790.1(117325),AL161788.1(27829)	AL135790.1(117334),AL161788.1(27820)	./.	./.	9:10749528	9:10749537	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
PRDM16	TATDN2	+/.	+/.	1:3331293	3:10249511	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000142611	ENSG00000157014	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MON1B	AP000781.2	+/+	-/-	16:77194712	11:57393664	CDS	intron	translocation	0	0	0	10	0	low	.	.	First_Longin_domain_of_FUZ__MON1_and_HPS1(100%),Second_Longin_domain_of_FUZ__MON1_and_HPS1(9%)|	.	.	ENSG00000103111	ENSG00000254979	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC090204.1	AC092757.2	+/.	+/.	8:33013509	15:59122737	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000247134	ENSG00000259732	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
PGM5	AC092138.2(85726),AC022164.1(128439)	+/.	./.	9:68434360	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154330	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683459	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RAB13	EML4	-/.	+/.	1:153982813	2:42173496	exon	intron	translocation/3'-3'	1	0	0	5	0	low	.	.	.	.	.	ENSG00000143545	ENSG00000143924	.	.	downstream	upstream	duplicates(4),min_support	.	.	.
Y_RNA(24105),AC010105.1(145552)	RPSAP52	./.	-/.	2:82331273	12:65767071	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000241749	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004946.1(17650),KCND2(28312)	AC008083.2(38156),PPIAP45(24437)	./.	./.	7:120244863	12:47317177	intergenic	intergenic	translocation	0	0	0	9	5	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(2)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479895	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
FAM83B	GSE1	+/.	+/.	6:54859661	16:85260115	intron	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	ENSG00000168143	ENSG00000131149	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
ERN2	DIP2A(27614),S100B(975)	-/.	./.	16:23702061	21:46597629	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000134398	.	.	.	downstream	upstream	mismatches(2)	.	.	.
AC093912.1(103817),AC073062.1(102173)	DLG2	./.	-/.	2:13435500	11:85484186	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
RN7SL104P(43680),AC010145.1(2388)	Metazoa_SRP(49193),PAX2(19401)	./.	./.	2:15994661	10:100716202	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
TMEM38B(26285),SLC25A6P5(46796)	ARHGEF40	./.	+/.	9:105802914	14:21071327	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165801	.	.	upstream	upstream	mismatches(1)	.	.	.
STUM	LINC01495	+/.	-/.	1:226602660	11:22480925	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000203685	ENSG00000255323	.	.	upstream	upstream	mismatches(1)	.	.	.
SAMD12	ZIC3	-/.	+/.	8:118554925	X:137574882	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	ENSG00000156925	.	.	downstream	downstream	mismatches(1)	.	.	.
ABHD14A	RBFOX1	+/+	+/+	3:51973857	16:6222321	CDS	intron	translocation	0	0	0	0	0	low	.	.	|Calcitonin_gene-related_peptide_regulator_C_terminal(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000248487	ENSG00000078328	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC026202.1(36559),AC087857.1(669522)	AC079949.3	./.	+/.	3:5293320	12:127165978	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000286016	.	.	upstream	downstream	mismatches(1)	.	.	.
AC005833.1	CACNG5	+/.	+/.	12:4702203	17:66876179	intron	intron	translocation/5'-5'	0	0	0	19	0	low	.	.	.	.	.	ENSG00000255639	ENSG00000075429	.	.	downstream	downstream	mismatches	.	.	.
MRC2	GPR19	+/+	-/-	17:62689981	12:12676727	CDS	intron	translocation	0	0	0	9	3	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|7_transmembrane_receptor_(rhodopsin_family)(100%)	.	.	ENSG00000011028	ENSG00000183150	.	.	downstream	downstream	mismatches(1)	.	.	.
STYXL2	LINC02612	+/+	+/+	1:167128562	2:150617538	CDS	intron	translocation	0	0	0	0	45	low	.	.	Dual_specificity_phosphatase__catalytic_domain(100%)|	.	.	ENSG00000198842	ENSG00000224048	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4493),AP001994.1(77188)	FRMD5(93118),GOLM2(330)	./.	./.	11:119744116	15:44288389	intergenic	intergenic	translocation	0	0	0	3583	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
GNL1	DDB2	-/.	+/.	6:30556384	11:47233105	5'UTR	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000204590	ENSG00000134574	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
DNMBP-AS1	BRD4	+/.	-/.	10:99948205	19:15308155	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000227695	ENSG00000141867	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
PLCH2	5_8S_rRNA(2077),FP236383.3(121633)	+/.	./.	1:2451822	21:8259010	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000149527	.	.	.	upstream	upstream	mismatches	.	.	.
AC093627.22	AC025366.1(57830),AP005357.1(76639)	-/.	./.	7:117610	8:110690224	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
TAB2(11973),ZC3H12D(23209)	TAB2(11986),ZC3H12D(23196)	./.	./.	6:149423586	6:149423599	intergenic	intergenic	duplication/ITD	0	0	0	86	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
DTNBP1(49300),ARPC3P5(222424)	GNL3L	./.	+/.	6:15712358	X:54596602	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000130119	.	.	upstream	upstream	mismatches(1)	.	.	.
OFCC1	AC004852.2(134346),GAPDHP68(290775)	-/.	./.	6:9639085	7:9324203	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000181355	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
RNF43	FP671120.4	-/.	+/.	17:58385557	21:8213338	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000108375	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MYCT1(11995),VIP(14235)	FP236383.3	./.	+/.	6:152736562	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC083967.1(22202),LINC01592(5174)	FP236383.3	./.	+/.	8:68874965	21:8441655	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02235	FP236383.3	+/.	+/.	8:81842488	21:8433768	intron	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000254689	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TTPA(22952),AC011978.1(27218)	FP236383.3	./.	+/.	8:63109005	21:8445488	intergenic	intron	translocation	0	0	0	19	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP236383.5	LINC02150	-/-	-/-	21:8437807	5:16393216	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281181	ENSG00000248150	.	.	upstream	downstream	mismatches(1)	.	.	.
AGRN	JAKMIP3	+/.	+/.	1:1041773	10:132106461	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000188385	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF804B	RPL3P11(23739),ATP5PDP3(3332)	+/.	./.	7:89083078	9:14065600	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182348	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479888	X:133661638	intron	intron	translocation/3'-3'	0	0	0	2216	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
CALD1	DLG2	+/.	-/.	7:134777190	11:85484188	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000122786	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
AL591222.3(180982),AL512635.1(182470)	GSE1	./.	+/.	9:20148976	16:85260116	intergenic	intron	translocation	0	0	0	2	19	low	.	.	.	.	.	.	ENSG00000131149	.	.	upstream	upstream	mismatches(1)	.	.	.
GALNS	FP671120.4	-/.	+/.	16:88834648	21:8214781	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000141012	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729379	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(29),low_entropy(4)	.	.	.
LRP1B	ZCCHC14	-/.	-/.	2:141137947	16:87420184	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000168702	ENSG00000140948	.	.	downstream	upstream	mismatches(1)	.	.	.
SEC14L5	FP236383.3	+/+	+/+	16:5011163	21:8442047	CDS	intron	translocation	0	0	0	4	5962	low	.	.	CRAL/TRIO__N-terminal_domain(100%),CRAL/TRIO_domain(100%),PRELI-like_family(100%)|	.	.	ENSG00000103184	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
ERVK13-1	NDUFA1(11970),AKAP14(7205)	-/.	./.	16:2663080	X:119888632	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260565	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC45A1	CHST10	+/.	-/.	1:8329978	2:100396577	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000162426	ENSG00000115526	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104109.3	STAB1	-/-	+/+	5:134225650	3:52513883	intron	CDS/splice-site	translocation	0	0	0	0	0	low	.	.	|EGF_domain(67%),Extracellular_link_domain(100%),Fasciclin_domain(48%)	.	.	ENSG00000272772	ENSG00000010327	.	.	upstream	upstream	mismatches(1)	.	.	.
NOS1	NACC1	-/-	+/+	12:117265421	19:13122520	CDS	intron	translocation	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|BEN_domain(100%),BTB/POZ_domain(100%)	.	.	ENSG00000089250	ENSG00000160877	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4B	WDR13	-/.	+/.	19:50548288	X:48597824	intron	5'UTR	translocation/3'-3'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000131409	ENSG00000101940	.	.	downstream	upstream	mismatches(1)	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(915),IGHV4-39(2497)	./.	./.	14:106419121	14:106419214	intergenic	intergenic	duplication/ITD	0	0	0	192	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
PPP6R3	RNA5SP528(84346),DEFB115(357044)	+/.	./.	11:68530290	20:30900620	intron	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000110075	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00665	LINC00665	-/.	-/.	19:36277201	19:36277216	intron	intron	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	ENSG00000232677	ENSG00000232677	.	.	upstream	downstream	duplicates(8),low_entropy(1)	.	.	.
PRUNE2	AL359636.2	-/.	+/.	9:76808399	9:122558261	intron	intron	duplication/5'-5'	0	0	0	6	15	low	.	.	.	.	.	ENSG00000106772	ENSG00000234156	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMC4(94),MBOAT7(68)	SPANXB1(41300),LDOC1(66599)	./.	./.	19:54173344	X:141045006	intergenic	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HECW1	CFAP58	+/.	+/.	7:43336199	10:104396453	intron	intron	translocation/5'-5'	0	0	0	25	554	low	.	.	.	.	.	ENSG00000002746	ENSG00000120051	.	.	downstream	downstream	low_entropy	.	.	.
ALK	NACC2	-/.	-/.	2:29845744	9:136019086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171094	ENSG00000148411	.	.	upstream	upstream	mismatches(1)	.	.	.
TTPA(22951),AC011978.1(27219)	LINC01068(56234),AL136442.1(9754)	./.	./.	8:63109004	13:79627679	intergenic	intergenic	translocation	0	0	0	19	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC097655.1(491817),LINC02496(220172)	THEMIS	./.	-/.	4:60530403	6:127735531	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172673	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SFRP1	AMD1P1(55146),AL590032.1(140925)	-/.	./.	8:41308409	10:20406246	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000104332	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683455	15:81683470	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(25),low_entropy(11)	.	.	.
CAST	FP236383.3	+/.	+/.	5:96664239	21:8397821	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000153113	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	1:208413786	15:45462156	intergenic	intron	translocation	0	0	0	68	28	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
NFIB	5_8S_rRNA(2177),FP236383.3(121533)	-/.	./.	9:14346299	21:8259110	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000147862	.	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
AP001823.1(3444),ELMOD1(744)	FXNP1(22683),NRXN3(87412)	./.	./.	11:107590347	14:78082961	intergenic	intergenic	translocation	0	0	0	1914	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
RNU6-248P(2089),RNU6-261P(351959)	FP236383.3	./.	+/.	6:76095029	21:8397435	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SLIT3	AL356157.3(30446),AL356157.1(45341)	-/.	./.	5:169074016	10:44545867	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184347	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
H2AZ1-DT	RNF43	+/.	-/.	4:100061827	17:58385558	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000245322	ENSG00000108375	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
POLE	FRMD4A	-/-	-/+	12:132650318	10:14238465	exon	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	ENSG00000151474	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC009093.11	5_8S_rRNA(2034),AC018688.1(58491)	+/.	./.	16:28518222	20:30487110	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000288630	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TMPO-AS1	FP236383.3	-/.	+/.	12:98516166	21:8442771	exon	intron	translocation/3'-3'	0	0	0	9	2	low	.	.	.	.	.	ENSG00000257167	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	DLEU1	-/.	+/.	5:80651215	13:50533058	intron	intron	translocation/3'-3'	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000176124	.	.	downstream	upstream	duplicates(6),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117422	10:113117455	intron	intron	duplication/ITD	0	0	0	129	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SAMD12	Z96074.1	-/.	+/.	8:118554925	X:137574882	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	ENSG00000283692	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNMB2	KCNMB2	+/.	+/.	3:178655093	3:178655110	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197584	ENSG00000197584	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL358154.1	FP671120.4	-/.	+/.	10:93782093	21:8214787	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000280485	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
NTRK2	AL121895.1	+/.	-/.	9:84975073	20:36154970	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148053	ENSG00000232406	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02235	LINC02620	+/.	-/.	8:81842436	10:104479908	intron	intron	translocation/3'-3'	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000254689	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
FP236383.3	AL008720.2(33562),Z72006.1(36701)	+/.	./.	21:8399950	22:48366761	intron	intergenic	translocation	0	0	0	205	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ITPR2(251),INTS13(71736)	TSPOAP1-AS1	./.	+/.	12:26833445	17:58385557	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000265148	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(1686),FP236383.3(122024)	MT-RNR2	./.	+/.	21:8258619	MT:1800	intergenic	exon	translocation	0	0	0	543	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
MARCHF4	AP001823.1(3429),ELMOD1(759)	-/.	./.	2:216263455	11:107590332	intron	intergenic	translocation	0	0	0	9	1909	low	.	.	.	.	.	ENSG00000144583	.	.	.	upstream	upstream	mismatches	.	.	.
GSE1	NAPB	+/.	-/.	16:85260115	20:23420828	intron	intron	translocation/3'-3'	0	0	0	19	0	low	.	.	.	.	.	ENSG00000131149	ENSG00000125814	.	.	upstream	downstream	mismatches(1)	.	.	.
RALGDS	LINC02098(161794),ETS1(55526)	-/.	./.	9:133148049	11:128403235	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000160271	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2W	CEMIP2(21729),ABHD17B(24033)	-/.	./.	8:73820102	9:71838419	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	upstream	duplicates(5)	.	.	.
LINC01194(95166),LINC02220(14539)	LINC00114(198),ETS2(57525)	./.	./.	5:12899529	21:38747658	intergenic	intergenic	translocation	0	0	0	2	10	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARL8B	FP671120.4	+/.	+/.	3:5167935	21:8210273	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000134108	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RBFOX1	FP236383.3	+/.	+/.	16:7555421	21:8442044	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000078328	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
KCTD20	PHBP17(4354),GRAMD1B(13360)	+/.	./.	6:36570999	11:123345068	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112078	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC25A48	FP671120.7(397),5_8S_rRNA(870)	+/.	./.	5:135775888	21:8255911	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000145832	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP210	PDZRN3	-/.	-/.	3:13366004	3:73449629	CDS	intron	inversion/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000132182	ENSG00000121440	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(524),FP236383.3(123186)	FP236383.3	./.	+/.	21:8257457	21:8394739	intergenic	intron	deletion/read-through	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RC3H1	RPL14P5(31331),CRLF2(146117)	-/.	./.	1:173991582	X:1041432	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000135870	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SOX9	RAI1	+/+	+/+	17:72121264	17:17769915	5'UTR	intron	duplication	0	0	0	0	2	low	.	.	|PHD-like_zinc-binding_domain(100%)	.	.	ENSG00000125398	ENSG00000108557	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	21:8212039	21:8255907	intron	intergenic	inversion	0	0	0	20	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HTR3A(42047),ZBTB16(27351)	FP236383.3	./.	+/.	11:114032360	21:8397829	intergenic	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
KIAA2012-AS1	UNC13C	-/.	+/.	2:202083777	15:54450207	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000137766	.	.	downstream	upstream	mismatches(1)	.	.	.
VPS53	AC007923.3	-/.	+/.	17:669324	17:31600833	intron	intron	deletion/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000141252	ENSG00000266877	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262467	6:42262483	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ASCC3	NGRN	-/.	+/.	6:100809843	15:90270297	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000112249	ENSG00000182768	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01060	AC022826.2	+/.	-/.	4:188533876	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	ENSG00000258677	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
ABHD2	FP236383.3	+/.	+/.	15:89133592	21:8441654	intron	intron	translocation	0	0	0	3	546	low	.	.	.	.	.	ENSG00000140526	ENSG00000280441	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
LIMD1	POTEG(47256),MED15P6(3739)	+/.	./.	3:45593628	14:19481597	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01470	FP236383.3	-/.	+/.	5:153185380	21:8397834	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000249484	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
TCF12	AC099482.1	+/.	-/.	15:57216569	16:23199586	intron	intron	translocation/3'-3'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000140262	ENSG00000260741	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.5	LINC01897(19535),HMGN1P30(34825)	-/-	./+	21:8437806	18:57983969	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281181	.	.	.	upstream	upstream	mismatches(1)	.	.	.
YES1	DNMBP	-/-	-/+	18:812332	10:99948205	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000176105	ENSG00000107554	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC016687.3	THEMIS	-/.	-/.	4:33838136	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000250954	ENSG00000172673	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC022215.2	PXYLP1	-/.	+/.	3:141268163	3:141268207	intron	intron	duplication/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000287155	ENSG00000155893	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP236383.4	ZNF638	-/-	+/-	21:8393597	2:71338687	exon	intron	translocation/5'-5'	0	0	0	16	2	low	.	.	.	.	.	ENSG00000280614	ENSG00000075292	.	.	upstream	downstream	mismatches(1)	.	.	.
B4GALT4-AS1	ARHGEF7-IT1	+/.	+/.	3:119280652	13:111123867	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000240254	ENSG00000233644	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
DDB2	KCNAB3	+/.	-/.	11:47233103	17:7929459	intron	5'UTR	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000170049	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC02864	AL050402.1(83516),AL133456.1(20263)	-/.	./.	18:73168244	22:27543576	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000263711	.	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214788	21:8214815	intron	intron	duplication/ITD	0	0	0	5263	6035	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(1),hairpin(1),merge_adjacent	.	.	.
AC022384.1	5_8S_rRNA(2092),FP236383.3(121618)	+/.	./.	3:10249514	21:8259025	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000272410	.	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
GLI3	FP236383.3	-/.	+/.	7:42206674	21:8397817	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000106571	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
KCNH2	KIRREL3	-/-	-/+	7:150947792	11:126435553	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	ENSG00000149571	.	.	upstream	upstream	mismatches(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48493),TPT1P1(55441)	./.	./.	2:128340558	21:31784900	intergenic	intergenic	translocation	0	0	0	35	149	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
CASKIN1	AL731768.1(245335),SRIP2(139747)	-/-	./-	16:2177848	X:89227688	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),C-terminal_region_of_Caskin(100%),Caskin1_CASK-interaction_domain(100%),Proline_rich_region_of_Caskin_proteins(100%),SAM_domain_(Sterile_alpha_motif)(100%),Variant_SH3_domain(100%)|	.	.	ENSG00000167971	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
CCDC136(8126),FLNC(148)	RNF43	./.	-/.	7:128830258	17:58385558	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000108375	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
HIVEP2	HNRNPDLP1(10837),RPS7P13(29369)	-/.	./.	6:142946392	X:95649761	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZRANB3	LINC00871	-/.	+/.	2:135144416	14:46105933	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000121988	ENSG00000258700	.	.	upstream	upstream	mismatches(2)	.	.	.
C6orf62(577),LINC02828(1083)	RPL34P29(4462),AC007603.3(15171)	./.	./.	6:24720575	16:49939814	intergenic	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC068286.2	MT-RNR1	-/.	+/.	2:14919275	MT:657	intron	exon	translocation/3'-3'	0	0	0	9	.	low	.	.	.	.	.	ENSG00000287291	ENSG00000211459	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DLG2	MT-RNR2	-/.	+/.	11:85484079	MT:1699	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000150672	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RPS10-NUDT3	FP671120.4	-/.	+/.	6:34315128	21:8217546	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000270800	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
DPY19L2P1	HDAC8	-/.	-/.	7:35175639	X:72350912	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000189212	ENSG00000147099	.	.	upstream	downstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	X:31138625	X:31138634	intron	intron	duplication/ITD	0	0	0	22	0	low	.	.	.	.	.	ENSG00000198947	ENSG00000198947	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
PDS5A	UNC13A	-/.	-/.	4:39875783	19:17686852	intron	intron	translocation/3'-3'	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	ENSG00000130477	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMEM119(10438),SELPLG(13137)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	12:108608758	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
AL445466.1(192393),LINC02817(3466)	HECW1	./.	+/.	1:221326614	7:43467002	intergenic	intron	translocation	0	0	0	11	1	low	.	.	.	.	.	.	ENSG00000002746	.	.	downstream	downstream	mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	DNAJA3	./.	+/.	8:37342743	16:4450982	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000103423	.	.	upstream	downstream	mismatches(1)	.	.	.
SMIM23(15123),FBXW11(50300)	DTNA	./.	+/.	5:171811249	18:34571662	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000134769	.	.	downstream	downstream	mismatches(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051977	1:161059767	intron	intron	duplication	0	0	0	66	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
ALK	CLEC11A	-/.	+/.	2:29845745	19:50725294	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171094	ENSG00000105472	.	.	upstream	upstream	mismatches(1)	.	.	.
HTRA2	AC006288.1(198),LINC01613(410730)	+/+	./-	2:74532907	9:119524323	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	PDZ_domain(79%),Trypsin-like_peptidase_domain(100%)|	.	.	ENSG00000115317	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	AP001994.3	+/.	+/.	10:104396370	11:119903364	intron	intron	translocation	0	0	0	558	2	low	.	.	.	.	.	ENSG00000120051	ENSG00000288047	.	.	upstream	downstream	low_entropy(2)	.	.	.
OR4A6P(481291),TRIM48(55048)	C12orf65	./.	+/.	11:55207107	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000130921	.	.	downstream	downstream	homopolymer(1)	.	.	.
RAB3GAP1	LINC00871	+/.	+/.	2:135144416	14:46105933	intron	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000115839	ENSG00000258700	.	.	upstream	upstream	mismatches(2)	.	.	.
ST3GAL5(13880),AC012511.2(15456)	FP671120.4	./.	+/.	2:85919079	21:8214795	intergenic	intron	translocation	0	0	0	10	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
LPP	RPL37P21(102352),RPS3AP52(200225)	+/.	./.	3:188403069	13:68433965	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145012	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SREBF2-AS1	AL359715.3(60),RPL17P25(17096)	-/-	./+	22:41833576	6:80356919	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DENND1C	AMD1P1(55149),AL590032.1(140922)	-/-	./+	19:6479030	10:20406249	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	uDENN_domain(68%)|	.	.	ENSG00000205744	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749084	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	duplicates(7),mismatches(1)	.	.	.
AC011747.1(4440),ID2-AS1(39254)	MT-RNR2	./.	+/.	2:8627382	MT:1791	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
SDC2(16874),CPQ(16578)	PRDM11	./.	+/.	8:96628664	11:45182397	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000019485	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL355836.3	PSMG2	-/.	+/.	14:101193603	18:12698096	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000288245	ENSG00000128789	.	.	downstream	downstream	mismatches(2)	.	.	.
ADGRB2	AL118557.1(10756),PTGDR(100763)	-/.	./.	1:31762936	14:52166935	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000121753	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	KALRN	./.	+/.	3:95431526	3:124250687	intergenic	intron	inversion	0	0	0	45	0	low	.	.	.	.	.	.	ENSG00000160145	.	.	downstream	downstream	duplicates(3),mismatches(3)	.	.	.
TTC13	TCF7L2	-/.	+/.	1:230978373	10:113117445	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143643	ENSG00000148737	.	.	upstream	upstream	mismatches(1)	.	.	.
LMNB1	LINC02055	+/+	+/+	5:126776742	8:136983858	5'UTR	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000113368	ENSG00000254101	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479885	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
EBF2	AL355300.1(98940),MTND5P17(244553)	-/.	./.	8:26038601	10:36188329	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000221818	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC097634.4	THEMIS	-/.	-/.	3:71361988	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000285708	ENSG00000172673	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MGAT5	FP236383.3	+/.	+/.	2:134274704	21:8444822	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000152127	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MLLT10(12025),DNAJC1(893)	AC027369.3	./.	-/.	10:21755655	11:48882671	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000254728	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A11	FP236383.3	-/.	+/.	17:72884574	21:8400584	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000133195	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SGMS1	FP236383.3	-/.	+/.	10:50624032	21:8442046	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000198964	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
FP671120.4	5_8S_rRNA(2095),FP236383.3(121615)	+/.	./.	21:8214782	21:8259028	intron	intergenic	duplication	0	0	0	5263	5782	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	duplicates(2),homopolymer(2)	.	.	.
AC022826.2	LINC01791	-/.	+/.	8:73820119	19:31189090	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000267777	.	.	downstream	downstream	mismatches(2)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650925	21:8444603	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AGRN	AC079193.1(4368),ZDHHC2(1226)	+/+	./-	1:1046489	8:17155256	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Agrin_NtA_domain(100%),Kazal-type_serine_protease_inhibitor_domain(100%),Laminin_EGF_domain(100%)|	.	.	ENSG00000188157	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	1:208413786	15:45463198	intergenic	intron	translocation	0	0	0	68	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
TATDN2	FAT1(23083),AC108865.1(141164)	+/.	./.	3:10249513	4:186749805	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	.	.	.	upstream	upstream	duplicates(1),mismatches(3)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262472	6:42262485	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8214784	MT:1971	intron	exon	translocation/3'-3'	0	0	0	5263	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC005099.1	ELF2	+/+	-/+	7:105819538	4:139103597	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000226624	ENSG00000109381	.	.	downstream	upstream	mismatches(1)	.	.	.
MICALL2	FP236383.3	-/-	+/+	7:1444968	21:8442058	CDS	intron	translocation	0	0	0	0	5962	low	.	.	Calponin_homology_(CH)_domain(100%),LIM_domain(100%)|	.	.	ENSG00000164877	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
FP236383.3	AL807742.1	+/.	-/.	21:8444134	X:21320978	intron	intron	translocation/3'-3'	0	0	0	19	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000283380	.	.	upstream	downstream	mismatches(1)	.	.	.
MT-RNR2	MT-RNR2	+/.	+/.	MT:2452	MT:2609	exon	exon	inversion/3'-3'	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SEMA5B(2027),PDIA5(36393)	SEMA5B(2036),PDIA5(36384)	./.	./.	3:123030632	3:123030641	intergenic	intergenic	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
NAV1	NAV1	+/.	+/.	1:201702678	1:201702687	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000134369	ENSG00000134369	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ABHD14A	KRT8P18(38618),RNU6-243P(1073)	+/+	./-	3:51973857	3:35255767	CDS	intergenic	inversion	0	0	0	0	21	low	.	.	.	.	.	ENSG00000248487	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
LINC01592	AC005258.1	-/.	+/.	8:68940496	19:2338920	intron	intron	translocation/5'-5'	0	0	0	30	15	low	.	.	.	.	.	ENSG00000253658	ENSG00000273734	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8206231	21:8397826	intron	intron	deletion/read-through	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(10),mismatches(6)	.	.	.
CMIP	FP236383.3	+/.	+/.	16:81678636	21:8394736	intron	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000153815	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
H1-2(25919),HFE(4892)	LURAP1L-AS1	./.	-/.	6:26082389	9:12736559	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000235448	.	.	upstream	upstream	mismatches(1)	.	.	.
KIF18BP1(8106),AC106785.1(68982)	FP236383.3	./.	+/.	16:35653286	21:8401909	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS7P4(20662),COX6B1P7(18671)	FP671120.4	./.	+/.	1:68263717	21:8214396	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
FMN2	MAFG	+/.	-/.	1:240093701	17:81925418	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155816	ENSG00000197063	.	.	upstream	downstream	mismatches(1)	.	.	.
BAG6	FP236383.3	-/.	+/.	6:31647292	21:8397815	intron	intron	translocation	0	0	0	5	6042	low	.	.	.	.	.	ENSG00000204463	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
RPL9P15(50533),AC073359.2(99364)	SLC25A48	./.	+/.	3:154727652	5:135775888	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000145832	.	.	upstream	downstream	mismatches(1)	.	.	.
HAS2-AS1	ANKRD34C-AS1	+/.	-/.	8:121910313	15:79162042	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248690	ENSG00000259234	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRIM49	LINC01484	-/-	-/+	11:89804075	5:173742753	CDS	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	B-box_zinc_finger(100%),zinc_finger_of_C3HC4-type__RING(100%)|	.	.	ENSG00000168930	ENSG00000253686	.	.	upstream	upstream	mismatches(1)	.	.	.
TBXT	AC121334.1(19776),AC121334.2(52460)	-/.	./.	6:166166388	12:39487121	intron	intergenic	translocation	0	0	0	0	49	low	.	.	.	.	.	ENSG00000164458	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
UBE2W	FP671120.4	-/.	+/.	8:73820101	21:8217333	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000104343	ENSG00000278996	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
LINC02235	AP003390.1(4501),AP001994.1(77180)	+/.	./.	8:81842439	11:119744124	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
LINC01036	5_8S_rRNA(2083),FP236383.3(121627)	+/.	./.	1:187443964	21:8259016	exon	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000230426	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP001823.1(3428),ELMOD1(760)	+/.	./.	10:104396370	11:107590331	intron	intergenic	translocation	0	0	0	558	1909	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	mismatches	.	.	.
AC025442.2(9210),SREK1(36824)	FLJ42969(16025),AP003469.2(29713)	./.	./.	5:66103147	8:101092432	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ERN2	FP236383.3	-/.	+/.	16:23702061	21:8442045	intron	intron	translocation/3'-3'	0	0	0	8	5962	low	.	.	.	.	.	ENSG00000134398	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
FXNP1(22675),NRXN3(87420)	FXNP1(22702),NRXN3(87393)	./.	./.	14:78082953	14:78082980	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
OXNAD1	PLCG2	+/.	+/.	3:16298767	16:81868660	intron	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000197943	.	.	downstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092350	11:88092363	intron	intron	duplication/ITD	0	0	0	1170	1166	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1)	.	.	.
FTH1P5(85248),AL158050.2(386778)	AC012060.1(92676),LINC02248(36443)	./.	./.	6:50998504	15:26358594	intergenic	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
PLCL1	IGHVIII-38-1(924),IGHV4-39(2488)	+/.	./.	2:198277711	14:106419223	intron	intergenic	translocation	0	0	0	217	165	low	.	.	.	.	.	ENSG00000115896	.	.	.	downstream	downstream	low_entropy	.	.	.
EBF2(345),RNA5SP258(91122)	5_8S_rRNA(2080),FP236383.3(121630)	./.	./.	8:26045758	21:8259013	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC004687.2	AC004973.1(5483),SLC25A43(258)	-/.	./.	17:58385558	X:119399078	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CCDC136(8126),FLNC(148)	AC004687.2	./.	-/.	7:128830258	17:58385558	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285897	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
OR5D14(14699),OR5L1(168)	AC091167.2	./.	+/.	11:55811199	15:90270299	intergenic	intron	translocation	0	0	0	9	14	low	.	.	.	.	.	.	ENSG00000261147	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FIG4	AC137579.1	+/+	-/+	6:109738836	8:37658331	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	SacI_homology_domain(54%)|	.	.	ENSG00000112367	ENSG00000253344	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00970	MYHAS	-/.	+/.	1:169027434	17:10560410	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000203601	ENSG00000272975	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
UGT1A6	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000167165	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC093912.1(103817),AC073062.1(102173)	5_8S_rRNA(1684),FP236383.3(122026)	./.	./.	2:13435500	21:8258617	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
FEM1AP3	ADCY1	-/.	+/.	6:112366772	7:45682482	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000217770	ENSG00000164742	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	AP001599.1	+/.	+/.	21:8441660	21:26914103	intron	intron	duplication	0	0	0	546	167	low	.	.	.	.	.	ENSG00000280441	ENSG00000223563	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
KANK4(4459),USP1(112404)	LINC02644(43854),ZNF438(52613)	./.	./.	1:62323893	10:30767594	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FAT1(23087),AC108865.1(141160)	MECP2	./.	-/.	4:186749809	X:154125517	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000169057	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AL133405.2(49339),AL133405.1(13779)	PPP1R12A	./.	-/.	6:17002038	12:79875396	intergenic	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	.	ENSG00000058272	.	.	downstream	upstream	mismatches(1)	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	7:129531132	15:45463195	intergenic	intron	translocation	0	0	0	68	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MACROD1	FP236383.3	-/.	+/.	11:64165542	21:8397851	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000133315	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	12:105046145	12:105046193	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000136010	.	.	upstream	downstream	duplicates(5),low_entropy(3),merge_adjacent	.	.	.
MIR4300HG	NGB	-/.	-/.	11:82143176	14:77269807	intron	intron	translocation/3'-3'	0	0	0	1095	32	low	.	.	.	.	.	ENSG00000245832	ENSG00000165553	.	.	downstream	downstream	mismatches	.	.	.
AP003390.1(4494),AP001994.1(77187)	FP236383.3	./.	+/.	11:119744117	21:8414018	intergenic	intron	translocation	0	0	0	3583	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AL355981.1	LETM1	-/.	-/.	1:86824100	4:1841521	intron	CDS	translocation	0	0	0	5	32	low	.	.	.	.	.	ENSG00000284846	ENSG00000168924	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47233103	21:8397441	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
GGPS1	RASD2(44070),MB(8695)	+/.	./.	1:235327619	22:35598069	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	.	.	.	upstream	upstream	mismatches(1)	.	.	.
THEMIS	XKR6	-/.	-/.	6:127823781	8:11122771	intron	intron	translocation/3'-3'	0	1	0	0	4	low	.	.	.	.	.	ENSG00000172673	ENSG00000171044	.	.	downstream	downstream	min_support	.	.	.
AC079760.2	FP236383.3	+/.	+/.	7:91494892	21:8433768	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000243144	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PCBP3	PCBP3	+/.	+/.	21:45646049	21:45646108	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000183570	ENSG00000183570	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC002463.1	DLG2	+/.	-/.	7:112751486	11:85484188	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000223646	ENSG00000150672	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ROBO1	ERVK13-1	-/.	-/.	3:78928989	16:2663078	intron	exon	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000169855	ENSG00000260565	.	.	downstream	downstream	mismatches(1)	.	.	.
PKN2-AS1	FP236383.3	-/.	+/.	1:87944416	21:8397818	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000237505	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
VAV3	GAPDHP75(532267),RNA5SP73(590)	-/.	./.	1:107670554	1:189665559	intron	intergenic	deletion	0	0	0	20	9	low	.	.	.	.	.	ENSG00000134215	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC012306.2	IRS3P(220),SAP25(872)	+/+	./-	2:127886711	7:100571356	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000272667	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NRP1	BTRC	-/.	+/.	10:33334709	10:101419720	5'UTR	intron	deletion/3'-3'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000099250	ENSG00000166167	.	.	downstream	upstream	mismatches(1)	.	.	.
OLFM1	AC027369.4	+/.	+/.	9:135106704	11:48893591	exon	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000130558	ENSG00000254920	.	.	upstream	upstream	mismatches(1)	.	.	.
IL15(110187),INPP4B(178986)	LINC01060	./.	+/.	4:141844174	4:188533877	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000249378	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC022384.1	SLC6A19	+/.	+/.	3:10249513	5:1210819	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000174358	.	.	upstream	downstream	mismatches(1)	.	.	.
AC019257.8	NAA40(5467),RNU6-45P(7684)	+/.	./.	8:1933322	11:63962786	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000283239	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PCAT19	TFAP2C(6163),RNU6-1146P(21984)	-/.	./.	19:41500859	20:56645446	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000267107	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NR2C2	C16orf72(26880),RPL21P119(7887)	+/+	./-	3:15042845	16:9148515	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Ligand-binding_domain_of_nuclear_hormone_receptor(81%),Zinc_finger__C4_type_(two_domains)(100%)|	.	.	ENSG00000177463	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3846),GPN2(7830)	./.	./.	1:26868241	1:26868302	intergenic	intergenic	duplication/ITD	0	0	0	80	79	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
MRC2	BAIAP2L1(190),PPIAP82(52839)	+/+	./-	17:62689982	7:98401280	CDS	intergenic	translocation	0	0	0	9	0	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL033529.1	TMEM254-AS1	+/.	-/.	1:32507193	10:80048148	intron	exon	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	ENSG00000230091	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479813	10:104479912	intron	intron	duplication/ITD	0	0	0	2200	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP671120.4(5324),FP671120.10(2384)	FP671120.7(379),5_8S_rRNA(888)	./.	./.	21:8232970	21:8255893	intergenic	intergenic	inversion	0	0	0	0	143	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC091705.1	TECTA	-/.	+/.	7:25549349	11:121157715	intron	intron	translocation	0	0	0	6	2	low	.	.	.	.	.	ENSG00000227386	ENSG00000109927	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC004869.1(133087),HMGN1P19(19949)	ATP11C	./.	-/.	7:46614665	X:139926293	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101974	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU6-1312P(86505),CRLF3P3(286793)	PLS1	./.	+/.	2:83744347	3:142644949	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000120756	.	.	downstream	downstream	mismatches(1)	.	.	.
TDO2	FP236383.3	+/.	+/.	4:155871604	21:8441654	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000151790	ENSG00000280441	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
ARHGEF10	NAA40(5467),RNU6-45P(7684)	+/.	./.	8:1933322	11:63962786	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000104728	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	ALG13	./.	+/.	6:168345669	X:111681867	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000101901	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MYT1L(85626),AC018685.2(220888)	FP236383.3	./.	+/.	2:2417290	21:8442064	intergenic	intron	translocation	0	0	0	12	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
CDKL4	MIR5692B(4316),AP001630.1(9309)	-/.	./.	2:39218062	21:42955330	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000205111	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TSPOAP1-AS1	SBNO2	+/.	-/.	17:58385558	19:1119477	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000265148	ENSG00000064932	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CTNNA2	LRRC4C	+/.	-/.	2:79384374	11:41021153	intron	intron	translocation	0	0	0	29	632	low	.	.	.	.	.	ENSG00000066032	ENSG00000148948	.	.	upstream	upstream	low_entropy	.	.	.
TCERG1L	GLP2R	-/.	+/.	10:131174981	17:9862138	intron	intron	translocation/3'-3'	0	0	0	0	28	low	.	.	.	.	.	ENSG00000176769	ENSG00000065325	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
MTND1P22(591),AC107208.1(31696)	CCNB2	./.	+/.	4:155464414	15:59122737	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000157456	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
LINC00841(80302),AL137026.2(198198)	MLLT1	./.	-/.	10:44061404	19:6222501	intergenic	CDS	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000130382	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
PGBD2	HIVEP2	+/.	-/.	1:248906848	6:142946392	intron	intron	translocation	0	0	0	0	63	low	.	.	.	.	.	ENSG00000185220	ENSG00000010818	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC005229.5	TCEA1	-/.	-/.	7:148605538	8:54016164	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000287636	ENSG00000187735	.	.	upstream	downstream	mismatches(1)	.	.	.
NRIP3	HBB	-/-	-/-	11:9003965	11:5225537	5'UTR	3'UTR	deletion	0	0	0	0	91	low	.	.	.	.	.	ENSG00000175352	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
RNF43	FP236383.3	-/.	+/.	17:58385557	21:8396371	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
B3GAT1-DT	FP236383.3	+/.	+/.	11:134501044	21:8437150	intron	intron	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000255545	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
TLE4	FP671120.4	+/.	+/.	9:79572889	21:8216777	intron	intron	translocation	0	0	0	12	2	low	.	.	.	.	.	ENSG00000106829	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683457	15:81683470	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
TBC1D2B	CDH5	-/.	+/.	15:78059562	16:66399644	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167202	ENSG00000179776	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006288.1(256746),LINC01613(154182)	RPS6KA5	./.	-/.	9:119780871	14:91009650	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000100784	.	.	upstream	downstream	mismatches(1)	.	.	.
SGMS1-AS1	FP236383.3	+/.	+/.	10:50624032	21:8442046	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000226200	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
P4HA2	FP671120.4	-/.	+/.	5:132228591	21:8214781	intron	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000072682	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
DDB2	KCNC3	+/.	-/.	11:47233105	19:50315297	intron	3'UTR	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000131398	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
GAU1	CACNG5	-/.	+/.	12:4702203	17:66876179	intron	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000255474	ENSG00000075429	.	.	downstream	downstream	mismatches	.	.	.
MRC2	AC008115.2	+/+	+/-	17:62689981	12:12676727	CDS	intron	translocation/5'-5'	0	0	0	9	3	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	ENSG00000257004	.	.	downstream	downstream	mismatches(1)	.	.	.
FBLN7	AL161613.1(256),SNORD27(13234)	+/.	./.	2:112141071	13:21126652	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000144152	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PTPRM	PTPRM	+/.	+/.	18:8240773	18:8240816	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000173482	ENSG00000173482	.	.	upstream	downstream	low_entropy(1)	.	.	.
NFE2L1	AC021506.1	+/+	-/+	17:48059602	18:75862751	CDS	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	bZIP_Maf_transcription_factor(100%)|	.	.	ENSG00000082641	ENSG00000266460	.	.	downstream	upstream	mismatches(1)	.	.	.
THAP12	FP236383.3	-/.	+/.	11:76380677	21:8397816	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000137492	ENSG00000280441	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AP001823.1(3441),ELMOD1(747)	AP001823.1(3540),ELMOD1(648)	./.	./.	11:107590344	11:107590443	intergenic	intergenic	duplication/ITD	0	0	0	1914	672	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	11:82143075	11:82143174	intron	intron	duplication/ITD	0	0	0	1119	1095	low	.	.	.	.	.	ENSG00000245832	ENSG00000245832	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
AP003390.1(4379),AP001994.1(77302)	AP003390.1(4388),AP001994.1(77293)	./.	./.	11:119744002	11:119744011	intergenic	intergenic	duplication/ITD	0	0	0	3458	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RUFY4(18121),CXCR2(16587)	HNRNPA3P8(184085),AC108740.1(40762)	./.	./.	2:218108702	3:80401319	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),homopolymer(2)	.	.	.
TBL1XR1	CEACAM21	-/.	+/.	3:177052293	19:41564262	intron	intron	translocation/5'-5'	0	0	0	1	8	low	.	.	.	.	.	ENSG00000177565	ENSG00000007129	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01287	PTPRD	-/.	-/.	7:153410186	9:8770683	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000234722	ENSG00000153707	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4500),AP001994.1(77181)	+/.	./.	10:104396370	11:119744123	intron	intergenic	translocation	0	0	0	558	3002	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
AL161449.2	FP236383.3	-/.	+/.	9:13024587	21:8442047	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000285637	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
GPAT3	AC090204.1	+/.	+/.	4:83567271	8:33013511	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000138678	ENSG00000247134	.	.	downstream	upstream	mismatches(1)	.	.	.
IER5(13110),LINC01732(68474)	RPL34P29(4462),AC007603.3(15171)	./.	./.	1:181106010	16:49939814	intergenic	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FAT1(23082),AC108865.1(141165)	AC104109.4	./.	-/.	4:186749804	5:134225646	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000273345	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RCAN2	RUNX1	-/.	-/.	6:46469324	21:35550075	intron	intron	translocation/3'-3'	0	0	0	33	15	low	.	.	.	.	.	ENSG00000172348	ENSG00000159216	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
ZNRF2P1	AL133500.1	+/.	-/.	7:32749930	X:72350912	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000237004	ENSG00000285547	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	AL161646.1	+/.	+/.	10:104396370	10:104583939	intron	intron	duplication	0	0	0	558	0	low	.	.	.	.	.	ENSG00000120051	ENSG00000237761	.	.	upstream	downstream	low_entropy(8)	.	.	.
AC023449.1(15669),ATP10A(80480)	AC105094.2	./.	-/.	15:25596791	18:61699638	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000267175	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092335	11:88092434	intron	intron	duplication/ITD	0	0	0	1166	1059	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394722	21:8415562	intron	intron	inversion/3'-3'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC112198.2(3914),ESM1(16107)	FP236383.3	./.	+/.	5:54961760	21:8441948	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ERI3	ACOX3	-/.	-/.	1:44320098	4:8370596	intron	intron	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000087008	.	.	downstream	downstream	mismatches(1)	.	.	.
LGI1	5_8S_rRNA(2083),FP236383.3(121627)	+/.	./.	10:93782093	21:8259016	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000108231	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC109309.1	AC084337.2	+/.	+/.	11:3231580	11:6496218	intron	intron	deletion	0	0	0	0	101	low	.	.	.	.	.	ENSG00000224513	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
FBXL7	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	5:15866365	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000183580	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL137803.1	LMX1B	-/.	+/.	1:75694266	9:126671248	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000230863	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749063	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
MCTP1	IREB2	-/.	+/.	5:95035865	15:78477059	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175471	ENSG00000136381	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK11A	C5orf38(7805),AC116359.1(24249)	-/.	./.	1:1709385	5:2763202	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000008128	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BMP2K	MT-RNR2	+/.	+/.	4:78905792	MT:2439	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000138756	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC009154.1	FP236383.3	+/.	+/.	16:86665156	21:8437078	intron	intron	translocation	0	0	0	0	55	low	.	.	.	.	.	ENSG00000261161	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL671862.1(43199),AC092265.1(168759)	ADCY1	./.	+/.	1:29540092	7:45682481	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164742	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004852.2(370146),GAPDHP68(54975)	XRCC6P2(65223),MAMLD1(63303)	./.	./.	7:9560003	X:150298119	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3443),ELMOD1(745)	./.	./.	11:107590331	11:107590346	intergenic	intergenic	duplication/ITD	0	0	0	1909	1408	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
AC093912.1(103817),AC073062.1(102173)	FP671120.4	./.	+/.	2:13435500	21:8214394	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
SMYD3	AC004687.2	-/.	-/.	1:246006332	17:58385558	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000185420	ENSG00000285897	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
B3GAT1-DT	FP671120.3(3966),FP671120.7(477)	+/.	./.	11:134501044	21:8254115	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000255545	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
DLGAP4	PTCSC2	+/+	-/+	20:36499153	9:97703100	exon	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	Guanylate-kinase-associated_protein_(GKAP)_protein(2%)|	.	.	ENSG00000080845	ENSG00000236130	.	.	downstream	upstream	mismatches(1)	.	.	.
STAM	NCOR2	+/.	-/.	10:17670216	12:124483957	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000136738	ENSG00000196498	.	.	downstream	downstream	mismatches(1)	.	.	.
CSMD1	FP671120.4	-/.	+/.	8:4575899	21:8214800	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000183117	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
TATDN2	5_8S_rRNA(2092),FP236383.3(121618)	+/.	./.	3:10249514	21:8259025	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000157014	.	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
PRDM16	FP236383.3	+/.	+/.	1:3423343	21:8442069	intron	intron	translocation	0	0	0	0	6003	low	.	.	.	.	.	ENSG00000142611	ENSG00000280441	.	.	upstream	downstream	duplicates(1),homopolymer(2)	.	.	.
AC115220.1	ENAH	+/+	-/+	7:64112668	1:225578637	exon	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000285544	ENSG00000154380	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NPAP1	FP236383.3	+/+	+/+	15:24675920	21:8442048	CDS	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000185823	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL033529.1	AC099791.3	+/.	+/.	1:32507193	1:61515247	intron	intron	inversion/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	ENSG00000284808	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022826.2	Z93403.1	-/.	+/.	8:73820119	X:42277880	intron	intron	translocation/3'-3'	0	0	0	10	31	low	.	.	.	.	.	ENSG00000258677	ENSG00000231772	.	.	downstream	upstream	duplicates(15),mismatches(10)	.	.	.
FAM83B	AC092275.1	+/.	+/.	6:54859661	16:85260115	intron	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	ENSG00000168143	ENSG00000287787	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC022384.1	GSE1	+/.	+/.	3:10249513	16:85260114	CDS	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000272410	ENSG00000131149	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
LINC02549	MTRNR2L10	-/.	-/.	6:68230113	X:55181914	intron	3'UTR	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000226497	ENSG00000256045	.	.	upstream	downstream	mismatches(1)	.	.	.
HFM1	BBS9	-/.	+/.	1:91387407	7:33425896	intron	intron	translocation/3'-3'	0	0	0	6	62	low	.	.	.	.	.	ENSG00000162669	ENSG00000122507	.	.	downstream	upstream	duplicates(6),mismatches(5)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626676	X:18626685	intron	intron	duplication/ITD	0	0	0	101	101	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(23),low_entropy(4)	.	.	.
TLE4	FP236383.3	+/.	+/.	9:79572889	21:8444046	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01377(94030),LINC01019(81747)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	5:3275517	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS10-NUDT3	FP236383.3	-/.	+/.	6:34315128	21:8400584	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000270800	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	AC044784.1(207220),LINC00709(95145)	-/-	./+	3:96618090	10:9180688	5'UTR	intergenic	translocation	0	0	0	80	4	low	.	.	.	.	.	ENSG00000269028	.	.	.	upstream	upstream	mismatches	.	.	.
AC067942.2(17103),LINC00575(12487)	FP671120.4	./.	+/.	4:82598487	21:8214785	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS7P4(20661),COX6B1P7(18672)	PAX3	./.	-/.	1:68263716	2:222298765	intergenic	5'UTR	translocation	0	0	0	0	17	low	.	.	.	.	.	.	ENSG00000135903	.	.	downstream	downstream	homopolymer(1)	.	.	.
JADE3	FAM156A	+/.	-/.	X:47020461	X:52944076	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000102221	ENSG00000268350	.	.	upstream	upstream	mismatches(1)	.	.	.
ESR1	MT-RNR2	+/.	+/.	6:151694868	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000091831	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC104123.1	WIPF3	+/.	+/.	5:96361270	7:29806814	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	ENSG00000122574	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	AC091806.1	+/.	+/.	21:8442062	X:40289161	intron	intron	translocation	0	0	0	6	10	low	.	.	.	.	.	ENSG00000280441	ENSG00000236393	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MYT1L(85626),AC018685.2(220888)	FP236383.3	./.	+/.	2:2417290	21:8397834	intergenic	intron	translocation	0	0	0	12	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479895	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
LINC01717(231083),LINC01774(5085)	AC093912.1(103799),AC073062.1(102191)	./.	./.	1:208967369	2:13435482	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TMEM74(47705),AC104248.1(35829)	FP236383.3	./.	+/.	8:108835299	21:8442047	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
DNTT	ADAM12	+/.	-/.	10:96333569	10:126095880	intron	intron	deletion/5'-5'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000107447	ENSG00000148848	.	.	downstream	upstream	mismatches(2)	.	.	.
AC004946.1(17650),KCND2(28312)	RP1(43574),AC084834.1(152291)	./.	./.	7:120244863	8:54915294	intergenic	intergenic	translocation	0	0	0	9	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(2)	.	.	.
AC079362.1(33708),AC068993.1(219143)	LINC02864	./.	-/.	12:78574383	18:73168244	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	downstream	upstream	mismatches(1)	.	.	.
LYPD6(60751),MMADHC(34748)	SH3PXD2B	./.	-/.	2:149534889	5:172340336	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000174705	.	.	upstream	upstream	mismatches(1)	.	.	.
MAPRE1P2(11497),AC093606.1(127083)	CUX1	./.	+/.	4:33023243	7:101816254	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000257923	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092333	11:88092346	intron	intron	duplication/ITD	0	0	0	1166	513	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
MAP3K7(430072),AL080284.1(373169)	MAP3K7(430121),AL080284.1(373120)	./.	./.	6:91017144	6:91017193	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MDK	AC009161.1(206458),AC009110.1(32168)	+/.	./.	11:46381516	16:62564204	intron	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000110492	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CIAO3	CWC27	-/-	+/+	16:737080	5:64929955	exon	intron	translocation	0	0	0	3	3	low	.	.	.	.	.	ENSG00000103245	ENSG00000153015	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
GLI3	5_8S_rRNA(2079),FP236383.3(121631)	-/.	./.	7:42206674	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000106571	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC01799(52503),AC007403.1(16581)	AC105252.1(292284),AC079380.1(3754)	./.	./.	2:67023965	4:133867492	intergenic	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SAMD12	FJX1(30126),AL138812.1(5703)	-/.	./.	8:118554925	11:35650991	intron	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4496),AP001994.1(77185)	GPC3	./.	-/.	11:119744119	X:133661640	intergenic	intron	translocation	0	0	0	3583	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
AP005436.1	AL049828.1	-/.	+/.	11:88092443	14:40229614	intron	intron	translocation	0	0	0	718	6	low	.	.	.	.	.	ENSG00000255102	ENSG00000258526	.	.	downstream	downstream	mismatches	.	.	.
FABP6	FP671120.4	+/.	+/.	5:160238121	21:8214790	intron	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000170231	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2096),FP236383.3(121614)	RPL14P5(32628),CRLF2(144820)	./.	./.	21:8259029	X:1042729	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
GALNS	FP671120.4	-/.	+/.	16:88834358	21:8211701	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000141012	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
AP001017.1(22907),SLC35G4(33842)	MT-RNR2	./.	+/.	18:11575754	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	10:80511726	10:80511735	intron	intron	duplication/ITD	0	0	0	17	11	low	.	.	.	.	.	ENSG00000108219	ENSG00000108219	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
TLE4	FP236383.3	+/.	+/.	9:79572888	21:8399806	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLIT1	LIN52(32941),VSX2(5273)	-/.	./.	10:97144907	14:74234176	intron	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000187122	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC021218.1(153925),Y_RNA(65854)	CRADD	./.	+/.	7:156120268	12:93846255	intergenic	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000169372	.	.	upstream	downstream	mismatches(2)	.	.	.
C9orf153	RPS27AP20(98222),BX890604.1(1706)	-/.	./.	9:86251977	X:3815822	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000187753	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRBV24OR9-2(9135),TRBV25OR9-2(3417)	RN7SKP263(6593),AC123567.1(124437)	./.	./.	9:33658749	12:94015640	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	ARL2-SNX15	./.	+/.	3:35255769	11:65014891	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000273003	.	.	downstream	downstream	mismatches(1)	.	.	.
HAND2	CRTAC1	-/.	-/.	4:173529808	10:98026055	5'UTR	intron	translocation	0	0	0	2	11	low	.	.	.	.	.	ENSG00000164107	ENSG00000095713	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAXBP1(52),C21orf62-AS1(256)	PAXBP1(66),C21orf62-AS1(242)	./.	./.	21:32771844	21:32771858	intergenic	intergenic	duplication/ITD	0	0	0	445	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
ARMC2	MT-RNR2	+/.	+/.	6:108947803	MT:2612	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000118690	ENSG00000210082	.	.	downstream	upstream	duplicates(2),uninteresting_contigs(2)	.	.	.
5_8S_rRNA(2086),FP236383.3(121624)	FP236383.3	./.	+/.	21:8259019	21:8397826	intergenic	intron	deletion/read-through	0	0	0	10	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479903	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
SERTAD2(533),RN7SL341P(65840)	RUFY4(18122),CXCR2(16586)	./.	./.	2:64751538	2:218108703	intergenic	intergenic	inversion	0	0	0	0	193	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
NPM1P10(286385),AL357522.1(173947)	AL121790.1	./.	+/.	6:104313148	14:37572119	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258414	.	.	downstream	downstream	mismatches(1)	.	.	.
TFB1M	CEMIP2(21729),ABHD17B(24033)	-/.	./.	6:155280046	9:71838419	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000029639	.	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
RIMBP2	MIR4713HG	-/.	+/.	12:130489483	15:51184193	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000060709	ENSG00000259240	.	.	upstream	downstream	mismatches(1)	.	.	.
AC073094.1(75507),MICALL2(83691)	DDB2	./.	+/.	7:1344774	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8400370	MT:1791	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
SPC25	KCNH8	-/.	+/.	2:168903615	3:19308652	intron	intron	translocation	0	0	0	1	119	low	.	.	.	.	.	ENSG00000152253	ENSG00000183960	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00882	H3P28(100180),AL355297.2(11600)	-/.	./.	3:107162204	6:156762617	intron	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000242759	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2077),FP236383.3(121633)	SMIM15P1(74040),PINCR(102558)	./.	./.	21:8259010	X:43074436	intergenic	intergenic	translocation	0	0	0	5911	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
LINC01377(94030),LINC01019(81747)	FP671120.4	./.	+/.	5:3275517	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
PKN2-AS1	FP236383.3	-/.	+/.	1:87944416	21:8442048	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000237505	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NOC2LP2(16145),RHOQP2(267)	FTX	./.	-/.	2:131460732	X:74076559	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000230590	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
EDAR	ATP2A3(8165),LINC01975(4474)	-/-	./+	2:108910982	17:3972629	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135960	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DENND1A	FP671120.3(3966),FP671120.7(477)	-/.	./.	9:123387695	21:8254115	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000119522	.	.	.	downstream	upstream	duplicates(3),mismatches(4)	.	.	.
ERI3	AC092266.1(135965),LSINCT5(314603)	-/.	./.	1:44320098	5:2397988	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396548	8:22396557	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
HERPUD2	HERPUD2	-/.	-/.	7:35674399	7:35674460	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000122557	ENSG00000122557	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
FXNP1(22678),NRXN3(87417)	FXNP1(22776),NRXN3(87319)	./.	./.	14:78082956	14:78083054	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021214	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(59),low_entropy(3),merge_adjacent	.	.	.
AC069288.1	FBLN1	-/.	+/.	7:1874424	22:45588361	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286192	ENSG00000077942	.	.	upstream	upstream	mismatches(1)	.	.	.
HNRNPA3P8(76939),AC108740.1(147908)	FP671120.4	./.	+/.	3:80294173	21:8215396	intergenic	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ALDH1L2	C12orf45	-/.	+/.	12:105046145	12:105046194	intron	intron	duplication/5'-5'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000151131	.	.	upstream	downstream	duplicates(280),low_entropy(20)	.	.	.
STX8	MT-RNR2	-/.	+/.	17:9536121	MT:2226	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000170310	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LMNB1	THUMPD1	+/+	-/+	5:126776742	16:20739152	5'UTR	intron	translocation/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000113368	ENSG00000066654	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749081	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4498),AP001994.1(77183)	FXNP1(22679),NRXN3(87416)	./.	./.	11:119744121	14:78082957	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC143336.1(94661),AC025774.1(236820)	FP236383.3	./.	+/.	5:71850962	21:8397821	intergenic	intron	translocation	0	0	0	8	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	CR392039.1(942),CR392039.3(8124)	+/.	./.	21:8442054	21:8988372	intron	intergenic	inversion	0	0	0	5962	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
AP003390.1(4500),AP001994.1(77181)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744123	14:78082961	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AL606923.2	PHF21B	-/.	-/.	6:68449194	22:45007388	intron	intron	translocation/3'-3'	0	0	0	16	0	low	.	.	.	.	.	ENSG00000288088	ENSG00000056487	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
TNFAIP3	PRUNE2	+/.	-/.	6:137873617	9:76808399	intron	intron	translocation	0	0	0	10	6	low	.	.	.	.	.	ENSG00000118503	ENSG00000106772	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAP3K21(26106),RNU4-77P(37372)	FP236383.3	./.	+/.	1:233411254	21:8397915	intergenic	intron	translocation	0	0	0	0	79	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
USP6	USP6	+/.	+/.	17:5158573	17:5158672	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000129204	ENSG00000129204	.	.	upstream	downstream	low_entropy(1)	.	.	.
FAT1(23081),AC108865.1(141166)	LINC01020	./.	+/.	4:186749803	5:4990794	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000215231	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	AC009035.1(259591),C16orf82(77990)	+/.	./.	11:47233103	16:26988717	intron	intergenic	translocation	0	0	0	341	14	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	NUDT13	./.	+/.	2:218108703	10:73120138	intergenic	CDS	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000166321	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749063	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
NDUFAF4(8228),RN7SL509P(8580)	GCNT1P5(3557),AC004921.2(21621)	./.	./.	6:96906119	7:77465696	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	4:94902254	4:94902263	intron	intron	duplication/ITD	0	0	0	345	345	low	.	.	.	.	.	ENSG00000138696	ENSG00000138696	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CSMD1	FP236383.3	-/.	+/.	8:4575899	21:8442064	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000183117	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL445207.1(92957),TXNL1P1(169809)	5_8S_rRNA(1746),DUX4L32(19832)	./.	./.	13:86555691	20:29298992	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214807	21:8442045	intron	intron	deletion/read-through	0	0	0	6035	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
OLFM1	AC027369.3	+/.	-/.	9:135106704	11:48886837	exon	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000130558	ENSG00000254728	.	.	upstream	downstream	mismatches(1)	.	.	.
KIRREL1	CSK(8121),LMAN1L(1397)	+/.	./.	1:158095792	15:74811319	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183853	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC079949.3	FP236383.3	+/.	+/.	12:127165982	21:8442055	intron	intron	translocation	0	0	0	11	5962	low	.	.	.	.	.	ENSG00000286016	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CERS6	XRCC6P2(65223),MAMLD1(63303)	+/.	./.	2:168669648	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172292	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL031282.2	C5orf38(7805),AC116359.1(24249)	-/.	./.	1:1709385	5:2763202	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000268575	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SEC14L5	TNFAIP1	+/.	+/.	16:4988032	17:28340233	intron	intron	translocation/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000103184	ENSG00000109079	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	5:177876243	15:45462226	intron	intron	translocation/5'-5'	0	0	0	68	29	low	.	.	.	.	.	ENSG00000170089	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
TPBG(285963),UBE3D(239007)	AL049828.1	./.	+/.	6:82653383	14:39436539	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000258526	.	.	downstream	downstream	mismatches(1)	.	.	.
CTB-178M22.2	LINC00273(638),RNA5-8SP2(2285)	-/.	./.	5:168236204	16:34160674	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000253978	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02794	MYO5B	+/.	-/.	1:48055750	18:49959684	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226133	ENSG00000167306	.	.	upstream	downstream	mismatches(1)	.	.	.
PAUPAR	AAMDC	+/.	+/.	11:31981345	11:77886439	intron	intron	deletion	0	0	0	0	5	low	.	.	.	.	.	ENSG00000281880	ENSG00000087884	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397799	21:8441952	intron	intron	inversion/3'-3'	0	0	0	5614	18	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GCK	HBB	-/.	-/.	7:44149936	11:5225537	intron	3'UTR	translocation	0	0	0	7	91	low	.	.	.	.	.	ENSG00000106633	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262471	6:42262482	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC093725.2(49325),AC093725.1(11910)	SNX30	./.	+/.	4:57708125	9:112817745	intergenic	CDS	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000148158	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ADAMTSL3	MT-RNR2	+/.	+/.	15:84000419	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000156218	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02345	SLC5A11	+/.	+/.	15:38053643	16:24883973	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000259225	ENSG00000158865	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022748.2	AC005258.1	+/.	+/.	15:78672957	19:2338920	intron	intron	translocation/5'-5'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000261303	ENSG00000273734	.	.	downstream	downstream	mismatches(1)	.	.	.
LRP1B	AC005229.5	-/.	-/.	2:141137944	7:148605538	intron	intron	translocation	0	0	0	8	10	low	.	.	.	.	.	ENSG00000168702	ENSG00000287636	.	.	downstream	upstream	mismatches(1)	.	.	.
CDH8	COL6A1	-/.	+/.	16:61831043	21:45986705	intron	intron	translocation	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	ENSG00000142156	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	Y_RNA(5812),MAP7D2(15742)	+/.	./.	21:8399905	X:19990971	intron	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025524.1	ABCA10	-/.	-/.	8:61821972	17:69221022	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000253834	ENSG00000154263	.	.	downstream	downstream	mismatches(1)	.	.	.
FNDC3B	THRAP3P2(6690),SLCO3A1(103063)	+/.	./.	3:172359009	15:91750645	intron	intergenic	translocation	0	0	0	128	21	low	.	.	.	.	.	ENSG00000075420	.	.	.	downstream	upstream	mismatches	.	.	.
RPS7P4(20662),COX6B1P7(18671)	DLG2	./.	-/.	1:68263717	11:85484188	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
AC093627.22	NOS2	-/.	-/.	7:117610	17:27777086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000007171	.	.	upstream	upstream	mismatches(1)	.	.	.
AC116362.1	TRIP11	-/.	-/.	5:125774671	14:91982490	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000248752	ENSG00000100815	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
GPR39	5_8S_rRNA(2236),FP236383.3(121474)	+/.	./.	2:132557878	21:8259169	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SRGAP2B	IQANK1	-/.	+/.	1:144954158	8:143751747	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000196369	ENSG00000203499	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	AMOTL1	+/.	+/.	10:113117445	11:94740521	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148737	ENSG00000166025	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3438),ELMOD1(750)	FXNP1(22683),NRXN3(87412)	./.	./.	11:107590341	14:78082961	intergenic	intergenic	translocation	0	0	0	1914	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
DTX4	FP236383.3	+/+	+/+	11:59195361	21:8397824	CDS	intron	translocation	0	0	0	4	1126	low	.	.	Deltex_C-terminal_domain(26%),WWE_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|	.	.	ENSG00000110042	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
C1orf94	FP236383.3	+/+	+/+	1:34177327	21:8442058	5'UTR	intron	translocation	0	0	0	7	5962	low	.	.	.	.	.	ENSG00000142698	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
YES1	DNMBP-AS1	-/-	+/+	18:812332	10:99948205	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000176105	ENSG00000227695	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ERN2	TMC4(90),MBOAT7(72)	-/.	./.	16:23702061	19:54173340	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000134398	.	.	.	downstream	downstream	mismatches(1)	.	.	.
UNQ6494(1831),BX470209.2(76290)	APBA2	./.	+/.	9:89721590	15:29078680	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000034053	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CACNG4	CACNG4	+/.	+/.	17:67002609	17:67002646	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000075461	ENSG00000075461	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
GLYATL1	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	11:58919736	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000166840	.	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
CARTPT(10916),AC143336.1(22414)	LINC02864	./.	-/.	5:71731964	18:73168244	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RFTN1P1	RFTN1P1	-/.	-/.	Y:7750018	Y:7750081	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000234795	ENSG00000234795	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC079804.2(2199),ALG1L5P(20982)	AL122058.1(7936),Y_RNA(20920)	./.	./.	7:6902822	20:57290934	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MFSD1	SLC39A14	+/.	+/.	3:158750074	8:22403724	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000118855	ENSG00000104635	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGEF26-AS1	CCDC3	-/-	-/+	3:154121333	10:13099409	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000243069	ENSG00000151468	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479905	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AL627095.1(5384),ZNF669(8511)	AL627095.1(5446),ZNF669(8449)	./.	./.	1:247091451	1:247091513	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC00511	COL20A1	-/.	+/.	17:72537262	20:63309525	intron	intron	translocation/3'-3'	0	0	0	16	0	low	.	.	.	.	.	ENSG00000227036	ENSG00000101203	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
YWHAZ	DDB2	-/.	+/.	8:100917283	11:47233086	3'UTR	intron	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000164924	ENSG00000134574	.	.	downstream	upstream	mismatches	.	.	.
LINC02444	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	12:73182054	21:8258619	intron	intergenic	translocation	0	0	0	3	543	low	.	.	.	.	.	ENSG00000258123	.	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
HBB	CDH4	-/.	+/.	11:5225537	20:61334513	3'UTR	intron	translocation	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000179242	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC019257.8	IL1RAPL1	+/.	+/.	8:1933307	X:28659567	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283239	ENSG00000169306	.	.	upstream	upstream	mismatches(1)	.	.	.
THADA	AC079760.2	-/.	+/.	2:43464624	7:91493507	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115970	ENSG00000243144	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	CFAP58	+/.	+/.	2:101785687	10:104396370	intron	intron	translocation/3'-3'	0	0	0	496	558	low	.	.	.	.	.	ENSG00000071054	ENSG00000120051	.	.	upstream	upstream	low_entropy	.	.	.
TET1P1(1937),LINC00373(248458)	GSE1	./.	+/.	13:87894409	16:85260115	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000131149	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
H4-16	LINC00917(55010),AC092327.1(30132)	-/.	./.	12:14769961	16:86404698	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197837	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP001823.1(3430),ELMOD1(758)	./.	./.	3:137274346	11:107590333	intergenic	intergenic	translocation	0	0	0	71	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
FP671120.3(1269),FP671120.7(3174)	FP236383.3	./.	+/.	21:8251418	21:8394735	intergenic	intron	deletion/read-through	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP001823.1(3441),ELMOD1(747)	AP001823.1(3539),ELMOD1(649)	./.	./.	11:107590344	11:107590442	intergenic	intergenic	duplication/ITD	0	0	0	1914	672	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GPR55	LINC02469	-/.	+/.	2:230948894	4:79684911	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135898	ENSG00000248408	.	.	upstream	downstream	mismatches(1)	.	.	.
AIF1L	AC091182.1(10752),AC091182.2(62696)	+/+	./+	9:131111961	8:37342743	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000126878	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNMB2	AC117457.1	+/.	+/.	3:178655093	3:178655110	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197584	ENSG00000275163	.	.	upstream	downstream	low_entropy(1)	.	.	.
FBXW5	TTTY2	-/.	+/.	9:136943086	Y:9750273	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	ENSG00000212855	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	CALN1	./.	-/.	5:36444163	7:71884517	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000183166	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NOC3L	LINC00189	-/.	+/.	10:94335830	21:29263475	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000173145	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
MTND1P27(580),LRP1B(9358)	GPAT3	./.	+/.	2:140222065	4:83567271	intergenic	intron	translocation	0	0	0	23	7	low	.	.	.	.	.	.	ENSG00000138678	.	.	downstream	downstream	mismatches(1)	.	.	.
AC084759.3	SPPL2B	+/+	+/-	15:53910829	19:2338920	exon	intron	translocation/5'-5'	0	0	0	7	15	low	.	.	.	.	.	ENSG00000280362	ENSG00000005206	.	.	downstream	downstream	mismatches(1)	.	.	.
ABCD3	MYOM3	+/+	-/-	1:94418450	1:24060637	5'UTR	intron	inversion	0	0	0	3	0	low	.	.	|Immunoglobulin_I-set_domain(32%)	.	.	ENSG00000117528	ENSG00000142661	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4494),AP001994.1(77187)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744117	14:78082961	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
OLFM1	AC027369.3	+/.	-/.	9:135106704	11:48893591	exon	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000130558	ENSG00000254728	.	.	upstream	upstream	mismatches(1)	.	.	.
ROBO2(144773),RNU6-217P(17004)	DLG2	./.	-/.	3:77794737	11:85484198	intergenic	intron	translocation	0	0	0	4	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	homopolymer(1)	.	.	.
Z93403.1	XACT(90619),AL953862.1(239080)	+/.	./.	X:42324735	X:114149908	intron	intergenic	duplication	0	0	0	5	0	low	.	.	.	.	.	ENSG00000231772	.	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
PDS5A	DGKH	-/.	+/.	4:39875783	13:42040508	intron	intron	translocation	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	ENSG00000102780	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01811	LETM2	+/.	+/.	3:34606612	8:38386813	intron	5'UTR	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000226320	ENSG00000165046	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
KRT18P55	AL008633.1	-/.	-/.	17:28307146	X:129098202	exon	intron	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000265480	ENSG00000225689	.	.	downstream	upstream	mismatches(1)	.	.	.
SFN(3791),GPN2(7885)	SFN(3851),GPN2(7825)	./.	./.	1:26868247	1:26868307	intergenic	intergenic	duplication/ITD	0	0	0	80	79	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8205791	21:8259011	intron	intergenic	deletion/read-through	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(2)	.	.	.
AC008269.1	AC022826.2	+/.	-/.	2:206862122	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	ENSG00000258677	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
AC068286.2	NDST1	-/.	+/.	2:14919275	5:150502747	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000287291	ENSG00000070614	.	.	downstream	upstream	mismatches(1)	.	.	.
GBE1	TCF4	-/.	-/.	3:81729494	18:55380907	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000114480	ENSG00000196628	.	.	downstream	upstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626668	X:18626677	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(5)	.	.	.
ZNF462	AP003390.1(4499),AP001994.1(77182)	+/.	./.	9:106864120	11:119744122	intron	intergenic	translocation	0	0	0	39	3002	low	.	.	.	.	.	ENSG00000148143	.	.	.	downstream	downstream	low_entropy	.	.	.
UBE2W	FP236383.3	-/.	+/.	8:73820101	21:8400368	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000280441	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
PAXBP1(63),C21orf62-AS1(245)	PAXBP1(72),C21orf62-AS1(236)	./.	./.	21:32771855	21:32771864	intergenic	intergenic	duplication/ITD	0	0	0	445	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TMEM41A	FP236383.3	-/.	+/.	3:185498083	21:8438950	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000163900	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC025366.1(57830),AP005357.1(76639)	SPPL2B	./.	+/.	8:110690224	19:2338920	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000005206	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4494),AP001994.1(77187)	+/.	./.	1:225078904	11:119744117	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
SMYD2	MT-RNR2	+/.	+/.	1:214296548	MT:1698	intron	exon	translocation/3'-3'	0	0	0	14	.	low	.	.	.	.	.	ENSG00000143499	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214697	21:8214713	intron	intron	duplication/ITD	0	0	0	9	18	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021199	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(12),merge_adjacent	.	.	.
LINC00917(55011),AC092327.1(30131)	FP671120.4	./.	+/.	16:86404699	21:8214791	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(3)	.	.	.
BICC1	AC018445.6(26773),AC068473.3(8847)	+/.	./.	10:58688003	18:79567613	intron	intergenic	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	.	.	.	downstream	downstream	duplicates(2),homopolymer(3)	.	.	.
AL157371.1(67423),AL109615.3(75967)	5_8S_rRNA(2095),FP236383.3(121615)	./.	./.	6:43919756	21:8259028	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
STK10	GRIA4	-/.	+/.	5:172090368	11:105839834	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000072786	ENSG00000152578	.	.	downstream	downstream	mismatches(1)	.	.	.
ARHGEF10	IL1RAPL1	+/.	+/.	8:1933307	X:28659567	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104728	ENSG00000169306	.	.	upstream	upstream	mismatches(1)	.	.	.
PDS5A	DYNLL2	-/.	+/.	4:39875783	17:58083857	intron	intron	translocation/3'-3'	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	ENSG00000264364	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL138997.1(126439),SPATA2P1(33537)	AC005357.2	./.	+/.	13:56180836	19:27961840	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000267623	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL21P18(19872),RNA5SP362(8635)	RPL21P18(19963),RNA5SP362(8544)	./.	./.	12:66057586	12:66057677	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TTLL5	TTLL5	+/.	+/.	14:75773928	14:75773941	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000119685	ENSG00000119685	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
TSPOAP1-AS1	AC004973.1(5483),SLC25A43(258)	+/.	./.	17:58385558	X:119399078	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MAP3K8(27800),HNRNPA1P32(27983)	ZNF302(39526),AC020910.5(7375)	./.	./.	10:30489633	19:34725923	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683455	15:81683470	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(25),low_entropy(11)	.	.	.
RNU6-1032P(19789),AC090912.1(32004)	GNL3L	./.	+/.	18:22667477	X:54578320	intergenic	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2079),FP236383.3(121631)	RPSAP68(44963),CR381572.2(31591)	./.	./.	21:8259012	21:8648947	intergenic	intergenic	duplication	0	0	0	5911	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
MYO5BP3(4745),CDK2AP2P3(7301)	HYDIN	./.	-/.	9:63767569	16:71158143	intergenic	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	.	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749057	intron	intron	translocation/5'-5'	0	0	0	0	283	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
SEMA4F	AC132008.2	+/.	-/.	2:74654669	3:197596562	intron	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000135622	ENSG00000214135	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
HEY2	LINC02459(32871),TBX5(79270)	+/.	./.	6:125747933	12:114274641	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000135547	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HYDIN2	TMEM19	+/.	+/.	1:146551982	12:71698816	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000139291	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
GNAI2	AC010319.2	+/.	-/.	3:50252438	19:17456613	CDS	intron	translocation/3'-3'	0	0	0	1	3	low	.	.	.	.	.	ENSG00000114353	ENSG00000269035	.	.	upstream	downstream	mismatches(1)	.	.	.
EHMT2	C10orf143	-/.	-/.	6:31897548	10:130046272	intron	intron	translocation/3'-3'	1	0	0	2	0	low	.	.	.	.	.	ENSG00000204371	ENSG00000237489	.	.	downstream	downstream	duplicates(1),min_support	.	.	.
AC022384.1	LETM1	+/.	-/.	3:10249513	4:1841519	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MTND1P27(583),LRP1B(9355)	PGAM5P1(106600),TMEM232(297210)	./.	./.	2:140222068	5:109992023	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CCSER2	SLC6A12	+/.	-/.	10:84328997	12:199333	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107771	ENSG00000111181	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AL353593.1	NCS1	-/.	+/.	1:228239488	9:130173133	exon	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000269934	ENSG00000107130	.	.	downstream	upstream	mismatches(1)	.	.	.
CBWD3	RBM38(6607),AL109955.1(26802)	+/.	./.	9:68241911	20:57415940	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196873	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	5:177876243	15:45462783	intron	intron	translocation/5'-5'	0	0	0	68	7	low	.	.	.	.	.	ENSG00000170089	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
IQCF5-AS1(8192),IQCF1(10917)	DDB2	./.	+/.	3:51883959	11:47233103	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
LINC00703	AC023043.3(17891),FHOD3(704)	+/.	./.	10:4389675	18:36297010	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224382	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LHFPL2	FP671120.7(147),5_8S_rRNA(1120)	-/.	./.	5:78676319	21:8255661	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000145685	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.5	WDR62(1882),OVOL3(4161)	-/-	./+	21:8438037	19:36106990	exon	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000281181	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ITPR2(251),INTS13(71736)	RNF43	./.	-/.	12:26833445	17:58385557	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000108375	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CLIC4	AC022826.2	+/.	-/.	1:24839659	8:73820119	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000169504	ENSG00000258677	.	.	downstream	downstream	mismatches(3)	.	.	.
AP000787.1(226450),AP001790.1(21565)	KRT18P53(61509),SHOX(17483)	./.	./.	11:95460841	X:606861	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PRKCZ	FP236383.3	+/.	+/.	1:2178891	21:8442060	intron	intron	translocation	0	0	0	2	5962	low	.	.	.	.	.	ENSG00000067606	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	LINC00240(55),VN1R13P(561)	./.	./.	4:186749803	6:27059804	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22752),NRXN3(87343)	./.	./.	14:78082946	14:78083030	intergenic	intergenic	duplication/ITD	0	0	0	336	401	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL591519.1	AL591519.1	+/.	+/.	6:93664696	6:93664793	intron	intron	duplication/ITD	0	0	0	22	15	low	.	.	.	.	.	ENSG00000287683	ENSG00000287683	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DCHS2	DCHS2	-/.	-/.	4:154459735	4:154459750	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000197410	ENSG00000197410	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01495	FP671120.4	-/.	+/.	11:22480925	21:8212038	intron	intron	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000255323	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
ZFHX4-AS1	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	8:76667139	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000253661	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CSMD2	FP236383.3	-/.	+/.	1:33894234	21:8442064	intron	intron	translocation/3'-3'	0	0	0	2	6	low	.	.	.	.	.	ENSG00000121904	ENSG00000280441	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
GLI2(26587),Y_RNA(21370)	RFPL4AP7(64492),AC090155.2(79427)	./.	./.	2:121019240	8:49417336	intergenic	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM41A	SLC2A9	-/.	-/.	3:185498083	4:9774826	intron	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	ENSG00000163900	ENSG00000109667	.	.	upstream	downstream	homopolymer(1)	.	.	.
GDF9	AP001599.1	-/-	+/-	5:132866329	21:26914103	5'UTR	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000164404	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SLCO5A1	CHODL	-/.	+/.	8:69690371	21:18199582	intron	intron	translocation/3'-3'	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000154645	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021213	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(32),low_entropy(1),merge_adjacent	.	.	.
INHBB	MIR3681HG	+/+	+/-	2:120346378	2:11878015	CDS	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163083	ENSG00000224184	.	.	downstream	downstream	mismatches(1)	.	.	.
CYP51A1P1(505971),AC023503.1(70453)	FP671120.4	./.	+/.	3:83313992	21:8206534	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SMYD3	TSPOAP1-AS1	-/.	+/.	1:246006332	17:58385558	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000185420	ENSG00000265148	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNU6-412P(73643),RAC1P2(118845)	TRPC5	./.	-/.	4:46604985	X:111987165	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000072315	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ASCC3	AC091167.2	-/.	+/.	6:100809843	15:90270297	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000112249	ENSG00000261147	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01060	UBE2W	+/.	-/.	4:188533876	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	ENSG00000104343	.	.	downstream	upstream	duplicates(4),mismatches(2)	.	.	.
FP236383.4	LINC02150	-/-	-/-	21:8393597	5:16393216	exon	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000280614	ENSG00000248150	.	.	upstream	downstream	mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749072	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AP003390.1(4502),AP001994.1(77179)	FP236383.3	./.	+/.	11:119744125	21:8414018	intergenic	intron	translocation	0	0	0	3002	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
Y_RNA(92916),RNA5SP103(1238)	AC022915.2	./.	+/.	2:128443843	8:48551625	intergenic	exon	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000253608	.	.	downstream	upstream	mismatches(1)	.	.	.
LILRA1	SHISAL1	+/+	-/-	19:54601090	22:44309231	3'UTR	intron	translocation	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	ENSG00000138944	.	.	downstream	downstream	mismatches(1)	.	.	.
BNC2	BNC2	-/-	-/-	9:16412702	9:16412764	3'UTR	3'UTR	duplication/ITD	0	0	0	22	22	low	.	.	Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000173068	ENSG00000173068	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAOB	MAOB	-/.	-/.	X:43857117	X:43857130	intron	intron	duplication/ITD	0	0	0	11	9	low	.	.	.	.	.	ENSG00000069535	ENSG00000069535	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
DNTT	RN7SKP167(12275),FGFR2(54857)	+/.	./.	10:96333569	10:121423475	intron	intergenic	inversion	0	0	0	21	0	low	.	.	.	.	.	ENSG00000107447	.	.	.	downstream	downstream	mismatches(2)	.	.	.
PAX5	LINC02291	-/.	-/.	9:36876961	14:97647629	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000196092	ENSG00000197176	.	.	upstream	downstream	mismatches(1)	.	.	.
DLG2	LINC02864	-/.	-/.	11:85484189	18:73168244	intron	intron	translocation/5'-5'	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000263711	.	.	upstream	upstream	duplicates(10),mismatches(5)	.	.	.
CES5A(24340),AC040168.1(3638)	FP236383.3	./.	+/.	16:55980371	21:8392940	intergenic	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
CDH8	FP236383.3	-/.	+/.	16:61831043	21:8433637	intron	intron	translocation/3'-3'	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01377(94030),LINC01019(81747)	FP236383.3	./.	+/.	5:3275517	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GGPS1	GPR26	+/.	+/.	1:235327619	10:123681685	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000154478	.	.	upstream	downstream	mismatches(1)	.	.	.
VGLL3	NPM1P10(286385),AL357522.1(173947)	-/.	./.	3:86945775	6:104313148	3'UTR	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000206538	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785692	X:133661643	intron	intron	translocation/3'-3'	0	0	0	496	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
FP700111.1	5_8S_rRNA(2003),FP236383.3(121707)	+/.	./.	1:144689684	21:8258936	intron	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000224363	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CTD-2297D10.2	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	5:5133201	21:8259010	exon	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000250579	.	.	.	downstream	upstream	mismatches	.	.	.
ERI3	KLF1	-/.	-/.	1:44320094	19:12886456	intron	intron	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000105610	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	U3(104498),GPC1(41722)	./.	./.	1:146273933	2:240393941	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),mismatches(3)	.	.	.
FP671120.7(883),5_8S_rRNA(384)	FP236383.3	./.	+/.	21:8256397	21:8397911	intergenic	intron	deletion/read-through	0	0	0	0	79	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211699	21:8398665	intron	intron	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(5),mismatches(5)	.	.	.
KIAA2012-AS1	SPANXA2-OT1	-/.	+/.	2:202083777	X:141542404	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000277215	.	.	downstream	upstream	mismatches(1)	.	.	.
OR5D3P(24082),OR5D17P(1274)	AC091515.1(60833),LINC02426(23840)	./.	./.	11:55753703	12:81929879	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3446),ELMOD1(742)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590349	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
SLC25A48	AL050309.1	+/.	+/.	5:135775888	X:56010864	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000145832	ENSG00000227486	.	.	downstream	upstream	mismatches(1)	.	.	.
CTBP2P2(16315),CYP2C18(19418)	SPIN3	./.	-/.	10:94664311	X:56931247	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000204271	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC145350.2	FP236383.3	-/.	+/.	16:33059130	21:8442044	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000260141	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
MBOAT2	TNIP3(17772),QRFPR(83404)	-/.	./.	2:8859782	4:121245238	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000143797	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PHRF1	FP236383.3	+/.	+/.	11:589570	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000070047	ENSG00000280441	.	.	upstream	upstream	duplicates(1)	.	.	.
AC097374.1	FP236383.3	-/.	+/.	2:94903279	21:8392866	intron	intron	translocation	0	0	0	17	43	low	.	.	.	.	.	ENSG00000259848	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LETM1	LINC01608	-/.	-/.	4:1841520	8:110977287	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168924	ENSG00000253877	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479891	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
AC188617.2(31900),AC147651.1(3384)	KMT2C	./.	-/.	7:480723	7:152384549	intergenic	intron	inversion	0	0	0	0	177	low	.	.	.	.	.	.	ENSG00000055609	.	.	upstream	upstream	mismatches(3)	.	.	.
MTF1(293),INPP5B(812),AL929472.2(812)	COL23A1	./.	-/.	1:37859885	5:178373376	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000050767	.	.	upstream	downstream	mismatches(1)	.	.	.
PLK4	5_8S_rRNA(2079),FP236383.3(121631)	+/+	./+	4:127890011	21:8259012	CDS	intergenic	translocation	0	0	0	0	5911	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000142731	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
DYNC2H1	RPL24P9(223684),AC074035.1(449955)	+/.	./.	11:103408682	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000187240	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001153.1(16594),CASP5(1525)	GNL3L	./.	+/.	11:104992710	X:54578320	intergenic	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
H3-5(8699),RNU6-1069P(1961)	TSPOAP1-AS1	./.	+/.	12:31800997	17:58385558	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000265148	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TTC13	AC009806.1(63109),AC107881.1(15250)	-/.	./.	1:230978372	11:12604076	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000143643	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004946.1(2692),KCND2(43270)	CENPJ	./.	-/.	7:120229905	13:24896496	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000151849	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	SYN3	+/.	-/.	21:8397825	22:32535780	intron	intron	translocation	0	0	0	1126	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000185666	.	.	upstream	upstream	mismatches(1)	.	.	.
HDAC5	FP671120.4	-/-	+/+	17:44078031	21:8214795	3'UTR	intron	translocation	0	0	0	0	5263	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
H3C10	AC022826.2	+/.	-/.	6:27810928	8:73820101	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	ENSG00000258677	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
AC017091.1	CHTF18	-/.	+/.	4:58783792	16:795868	intron	intron	translocation/5'-5'	0	0	0	12	5	low	.	.	.	.	.	ENSG00000251339	ENSG00000127586	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
PDZPH1P	ZNF462	-/.	+/.	5:103482858	9:106877176	intron	intron	translocation	0	0	0	67	3	low	.	.	.	.	.	ENSG00000226926	ENSG00000148143	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8205791	21:8397816	intron	intron	deletion/read-through	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	homopolymer(2)	.	.	.
FP671120.3(3894),FP671120.7(549)	FP236383.3	./.	+/.	21:8254043	21:8397823	intergenic	intron	inversion	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
VDAC2	AC064801.2	+/.	+/.	10:75210393	18:62551947	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165637	ENSG00000279236	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
MORF4L1	XRCC6P2(65225),MAMLD1(63301)	+/.	./.	15:78848353	X:150298121	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000185787	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC011592.1(442463),LARP7P4(635231)	AL359649.1	./.	+/.	3:144888307	13:111646270	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000204398	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.7	LINC02150	-/-	-/-	21:8254770	5:16393216	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281383	ENSG00000248150	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01885	CNTNAP3C(7628),AL935212.3(121155)	-/.	./.	2:107637876	9:61460658	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000237880	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275725	13:49275740	intron	intron	duplication/ITD	0	0	0	198	0	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01331(79560),ENC1(10870)	FP236383.3	./.	+/.	5:74616536	21:8442060	intergenic	intron	translocation	0	0	0	10	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02235	LINC02620	+/.	-/.	8:81842439	10:104479915	intron	intron	translocation/3'-3'	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000254689	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
TLE4	CLSTN3	+/.	+/.	9:79572886	12:7130724	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000139182	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
VCP	AL163195.1(16156),OR6S1(7549)	-/.	./.	9:35072605	14:20633147	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000165280	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TRBV24OR9-2(9135),TRBV25OR9-2(3417)	AC092757.2	./.	+/.	9:33658749	15:59122737	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259732	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
CDCP1	FP671120.4	-/.	+/.	3:45092935	21:8217546	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000163814	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RBMS3	RBMS3	+/.	+/.	3:29884423	3:29884438	intron	intron	duplication/ITD	0	0	0	14	0	low	.	.	.	.	.	ENSG00000144642	ENSG00000144642	.	.	upstream	downstream	duplicates(4),low_entropy(7)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626673	X:18626682	intron	intron	duplication/ITD	0	0	0	101	101	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262466	6:42262481	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(67),low_entropy(104)	.	.	.
NOTCH4	SIM2	-/-	+/+	6:32195774	21:36720283	CDS	3'UTR	translocation	0	0	0	1	0	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Calcium-binding_EGF_domain(100%),EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),LNR_domain(100%),NOTCH_protein(100%)|PAS_fold(55%),Single-minded_protein_C-terminus(100%)	.	.	ENSG00000204301	ENSG00000159263	.	.	upstream	upstream	mismatches(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	7:35674399	7:35674462	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000122557	ENSG00000122557	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC068286.2	MTCYBP13(1410),MTRNR2L1(992)	-/.	./.	2:14919275	17:22522119	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000287291	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916406	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
SLC2A9	RHEB	-/.	-/.	4:9774828	7:151518605	intron	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	ENSG00000106615	.	.	downstream	upstream	mismatches(1)	.	.	.
AUTS2	SEMA3E	+/+	-/+	7:70694495	7:83537018	5'UTR	intron	deletion/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000158321	ENSG00000170381	.	.	downstream	upstream	mismatches(1)	.	.	.
ABCC1	FP236383.3	+/.	+/.	16:16038749	21:8442054	intron	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000103222	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP236383.3	./.	+/.	21:8255893	21:8411580	intergenic	intron	inversion	0	0	0	143	3	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NOS3	DDB2	+/.	+/.	7:150995588	11:47233105	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000164867	ENSG00000134574	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
PKN2	FAM110B	+/.	+/.	1:88768909	8:58076460	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000065243	ENSG00000169122	.	.	upstream	downstream	mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	SIL1	./.	-/.	3:35255769	5:139105649	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000120725	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC116337.3	AC093627.22	-/.	-/.	5:75020587	7:117610	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249856	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
MLLT10(12025),DNAJC1(893)	ANO2	./.	-/.	10:21755655	12:5927222	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000047617	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	AC018445.6(26773),AC068473.3(8847)	./.	./.	2:218108703	18:79567613	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(5),homopolymer(4)	.	.	.
FAM83B	DPYSL4	+/.	+/.	6:54859661	10:132203748	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168143	ENSG00000151640	.	.	downstream	upstream	mismatches(1)	.	.	.
RGMB-AS1	AC093655.1(158441),AC004910.1(162681)	-/.	./.	5:98771438	7:68478117	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC022826.2	FP671120.4	-/.	+/.	8:73820101	21:8217333	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000258677	ENSG00000278996	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
SHE	ESR1	-/.	+/.	1:154469819	6:152095351	3'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169291	ENSG00000091831	.	.	downstream	upstream	mismatches(1)	.	.	.
AC015813.5(36051),AC015813.8(6551)	ZNF43(30936),ZNF208(49897)	./.	./.	17:58044238	19:21883061	intergenic	intergenic	translocation	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GALNT2	FAM83B	+/.	+/.	1:230187481	6:54859661	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000168143	.	.	upstream	downstream	mismatches(2)	.	.	.
TEDC1	FP236383.3	+/.	+/.	14:105494501	21:8442059	exon	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000185347	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02880(9169),HDAC2(2217)	AP003390.1(4501),AP001994.1(77180)	./.	./.	6:113930811	11:119744124	intergenic	intergenic	translocation	0	0	0	7	3002	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
AC004852.2(134346),GAPDHP68(290775)	TMEM132D	./.	-/.	7:9324203	12:129266512	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000151952	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
DLGAP2	AC092275.1	+/.	+/.	8:1089845	16:85260116	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000198010	ENSG00000287787	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L8	FP671120.4	-/.	+/.	11:10508413	21:8214313	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000255823	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL049828.1	FP236383.3	+/.	+/.	14:40135480	21:8444814	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000258526	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4501),AP001994.1(77180)	+/.	./.	10:104396370	11:119744124	intron	intergenic	translocation	0	0	0	558	3002	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
AC013287.1	NPAS3	+/.	+/.	10:64255521	14:33799874	intron	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	ENSG00000228566	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
HGS	FP671120.4	+/.	+/.	17:81688568	21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000185359	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
SERPINB7(22491),SERPINB2(43825)	FP236383.3	./.	+/.	18:63827867	21:8397817	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
RPS18P6(259152),MTHFD2P1(222894)	MDK	./.	+/.	3:95431529	11:46381516	intergenic	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	.	ENSG00000110492	.	.	downstream	downstream	mismatches(1)	.	.	.
COLEC11	AP001599.1	+/.	+/.	2:3605527	21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000118004	ENSG00000223563	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	AC010451.1	./.	-/.	4:186749803	5:4990794	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000250481	.	.	upstream	downstream	mismatches(1)	.	.	.
CDRT15P12(16078),RBPJP2(365212)	CDRT15P12(16093),RBPJP2(365197)	./.	./.	9:66270542	9:66270557	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC093912.1(103819),AC073062.1(102171)	DLG2	./.	-/.	2:13435502	11:85484188	intergenic	intron	translocation	0	0	0	28	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(4)	.	.	.
SALL2	FP236383.3	-/.	+/.	14:21526052	21:8397915	intron	intron	translocation/3'-3'	0	0	0	0	79	low	.	.	.	.	.	ENSG00000165821	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PODXL	PACS1	-/.	+/.	7:131541800	11:66160715	intron	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000128567	ENSG00000175115	.	.	upstream	downstream	mismatches(1)	.	.	.
ERI3	TSHZ2	-/.	+/.	1:44320094	20:52972657	intron	5'UTR	translocation/3'-3'	0	0	0	67	2	low	.	.	.	.	.	ENSG00000117419	ENSG00000182463	.	.	downstream	upstream	mismatches(1)	.	.	.
LETM1	AC061709.2(43427),AC061709.1(9584)	-/.	./.	4:1841522	12:128234922	CDS	intergenic	translocation	0	0	0	32	0	low	.	.	.	.	.	ENSG00000168924	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SEMA5B(2031),PDIA5(36389)	SEMA5B(2040),PDIA5(36380)	./.	./.	3:123030636	3:123030645	intergenic	intergenic	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BICC1	AATK	+/.	-/.	10:58688003	17:81127563	intron	intron	translocation/5'-5'	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000181409	.	.	downstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AC012355.1(90722),ANKRD11P1(233425)	LINC01205	./.	+/.	2:80960912	3:109700822	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000228980	.	.	downstream	upstream	mismatches(1)	.	.	.
SLCO5A1	SLC39A11	-/.	-/.	8:69690369	17:72884574	intron	intron	translocation/3'-3'	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000133195	.	.	downstream	downstream	mismatches(1)	.	.	.
AC008837.2(60704),CRLF3P2(292294)	AL591468.1(1337),LINC02528(38166)	./.	./.	5:99656001	6:137904913	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
DBNL	MT-RNR2	+/.	+/.	7:44067479	MT:2230	3'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136279	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC026202.1(306313),AC087857.1(399768)	LINC00189	./.	+/.	3:5563074	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000215533	.	.	downstream	downstream	mismatches(1)	.	.	.
SCN11A	RFPL4AP7(64492),AC090155.2(79427)	-/.	./.	3:38954200	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000168356	.	.	.	downstream	upstream	mismatches(1)	.	.	.
OR4A44P(124090),AC027369.6(127528)	LINC01841(5040),ADGRE5(5265)	./.	./.	11:48752583	19:14375236	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC087311.1(131560),SYT10(248924)	AC142381.4	./.	-/.	12:33125314	16:32030887	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000261727	.	.	downstream	downstream	mismatches(1)	.	.	.
TFRC	AC113386.1	-/-	-/+	3:196081920	5:31259669	5'UTR	intron	translocation/5'-5'	0	0	0	4	2	low	.	.	.	.	.	ENSG00000072274	ENSG00000254138	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MYT1	5_8S_rRNA(2176),FP236383.3(121534)	+/.	./.	20:64118266	21:8259109	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000196132	.	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
AC004946.1	IL1RAPL1	-/.	+/.	7:120162046	X:28659567	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233417	ENSG00000169306	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01602	TMEM198B	+/.	+/.	8:57869815	12:55832665	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000205293	ENSG00000182796	.	.	downstream	downstream	mismatches(1)	.	.	.
SF1	PKMYT1	-/.	-/.	11:64778076	16:2975914	CDS	intron	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000168066	ENSG00000127564	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02880(9169),HDAC2(2217)	AP003390.1(4499),AP001994.1(77182)	./.	./.	6:113930811	11:119744122	intergenic	intergenic	translocation	0	0	0	7	3002	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
ATR	PTMAP5(940759),AL445255.1(146377)	-/.	./.	3:142462335	13:82631831	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000175054	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
MBOAT2	LINC01790(1917),AC010983.1(240359)	-/.	./.	2:8859780	2:194763352	intron	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143797	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RN7SKP263(6593),AC123567.1(124437)	MTRNR2L10	./.	-/.	12:94015640	X:55181913	intergenic	3'UTR	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000256045	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
MTND1P27(582),LRP1B(9356)	CCNB2	./.	+/.	2:140222067	15:59122737	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000157456	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
MAP3K21(26106),RNU4-77P(37372)	5_8S_rRNA(2177),FP236383.3(121533)	./.	./.	1:233411254	21:8259110	intergenic	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
NR2F1-AS1	NR2F1-AS1	-/.	-/.	5:93581669	5:93581684	intron	intron	duplication/ITD	0	0	0	2	4	low	.	.	.	.	.	ENSG00000237187	ENSG00000237187	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
ZNF365	AC079772.1	+/+	+/-	10:62376871	4:33652318	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000138311	ENSG00000288321	.	.	downstream	downstream	mismatches(1)	.	.	.
FMN2	H3C10	+/.	+/.	1:240200874	6:27810927	intron	3'UTR	translocation	0	0	0	49	0	low	.	.	.	.	.	ENSG00000155816	ENSG00000278828	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
FAF2	CYP51A1-AS1	+/+	+/-	5:176506922	7:92135196	CDS	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|	.	.	ENSG00000113194	ENSG00000188693	.	.	downstream	downstream	mismatches(1)	.	.	.
ITGA2B	DYNC2H1	-/-	+/-	17:44384408	11:103278164	exon	intron	translocation/5'-5'	0	0	0	0	12	low	.	.	.	.	.	ENSG00000005961	ENSG00000187240	.	.	upstream	downstream	mismatches(1)	.	.	.
AL158828.1(81091),AL353613.1(62449)	FP671120.4	./.	+/.	9:86569698	21:8214800	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP001823.1(3432),ELMOD1(756)	./.	./.	3:137274346	11:107590335	intergenic	intergenic	translocation	0	0	0	71	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
UBE2W	TSHZ3	-/.	-/.	8:73820119	19:31189090	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000121297	.	.	downstream	downstream	mismatches(2)	.	.	.
ESR1	ESR1	+/.	+/.	6:151669140	6:151669189	intron	intron	duplication/ITD	0	0	0	55	55	low	.	.	.	.	.	ENSG00000091831	ENSG00000091831	.	.	upstream	downstream	duplicates(16),low_entropy(4)	.	.	.
LEMD1-DT(27310),CDK18(8262)	IL20RB(263261),RNA5SP142(243788)	./.	./.	1:205496334	3:137274346	intergenic	intergenic	translocation	0	0	0	9	71	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
OR5B10P(4166),AP000435.1(208)	MAFG	./.	-/.	11:58353796	17:81925418	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000197063	.	.	upstream	downstream	mismatches(1)	.	.	.
HECW1	AP003390.1(4430),AP001994.1(77251)	+/.	./.	7:43336198	11:119744053	intron	intergenic	translocation	0	0	0	25	3458	low	.	.	.	.	.	ENSG00000002746	.	.	.	downstream	downstream	mismatches	.	.	.
BICC1	ATP9B(2398),NFATC1(15171)	+/.	./.	10:58688003	18:79380685	intron	intergenic	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	.	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
DNMBP-AS1	NKX6-2(1634),CFAP46(20611)	+/.	./.	10:99948205	10:132787781	intron	intergenic	duplication	0	0	0	0	4	low	.	.	.	.	.	ENSG00000227695	.	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AC241644.2(8410),AC239801.1(43599)	AC027031.2(80998),OXR1(5576)	./.	./.	1:147797363	8:106353900	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394740	21:8441661	intron	intron	inversion/3'-3'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
RPA1(4088),RTN4RL1(30507)	MT-RNR2	./.	+/.	17:1904170	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	LINC02885(37301),ISX(25973)	./.	./.	5:175198325	22:35040163	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275719	13:49275796	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	duplicates(69),low_entropy(8)	.	.	.
RAB3C	IFT46	+/.	-/.	5:58801228	11:118566325	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000152932	ENSG00000118096	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC22A2	FBXW5	-/.	-/.	6:160207136	9:136943086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112499	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAFG-DT	5_8S_rRNA(18863)	+/+	./-	17:81928147	14:16038609	exon	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC106886.2	AC106886.2	+/.	+/.	16:30749000	16:30749090	intron	intron	duplication/ITD	0	0	0	188	221	low	.	.	.	.	.	ENSG00000260899	ENSG00000260899	.	.	upstream	downstream	small_insert_size	.	.	.
EN1(74669),MARCO(19849)	MLLT10(12025),DNAJC1(893)	./.	./.	2:118922317	10:21755655	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021211	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(26),merge_adjacent	.	.	.
NFIB	FP236383.3	-/.	+/.	9:14346299	21:8397915	intron	intron	translocation/3'-3'	0	0	0	0	79	low	.	.	.	.	.	ENSG00000147862	ENSG00000280441	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
AL121776.1	NME6	+/+	-/-	20:47071971	3:48301396	exon	5'UTR	translocation	0	0	0	6	0	low	.	.	|Nucleoside_diphosphate_kinase(100%)	.	.	ENSG00000239783	ENSG00000172113	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	AP006261.1(18722),LONRF2P1(571)	+/.	./.	2:32916401	18:14449645	intron	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000230876	.	.	.	upstream	upstream	mismatches	.	.	.
MYT1	FP671120.4	+/.	+/.	20:64118266	21:8214880	intron	intron	translocation/3'-3'	0	0	0	0	97	low	.	.	.	.	.	ENSG00000196132	ENSG00000278996	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
HDAC5	5_8S_rRNA(2091),FP236383.3(121619)	-/-	./+	17:44078031	21:8259024	3'UTR	intergenic	translocation	0	0	0	0	6	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC106795.1	AC106795.1	+/.	+/.	5:177876215	5:177876239	intron	intron	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	ENSG00000170089	ENSG00000170089	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ABCF3(34892),VWA5B2(1525)	RGMB-AS1	./.	-/.	3:184228904	5:98771438	intergenic	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	.	ENSG00000246763	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	2:237784949	15:45462784	intron	intron	translocation	0	0	0	67	7	low	.	.	.	.	.	ENSG00000124831	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
LINC02880(9169),HDAC2(2217)	AP003390.1(4495),AP001994.1(77186)	./.	./.	6:113930811	11:119744118	intergenic	intergenic	translocation	0	0	0	7	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
AC023141.7(3842403),AC128676.1(595912)	LINC01841(5040),ADGRE5(5265)	./.	./.	7:61679449	19:14375236	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
DPYD	RNF212B	-/.	+/.	1:97099094	14:23198768	intron	intron	translocation/5'-5'	0	0	0	0	12	low	.	.	.	.	.	ENSG00000188641	ENSG00000215277	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2086),FP236383.3(121624)	FP236383.3	./.	+/.	21:8259019	21:8392866	intergenic	intron	inversion	0	0	0	5911	43	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
RNU6-1312P(217523),CRLF3P3(155775)	ROBO1	./.	-/.	2:83875365	3:78928988	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000169855	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00399(22677),AL163541.1(54421)	Z98752.3	./.	+/.	13:109424318	20:43556450	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000277611	.	.	downstream	upstream	mismatches(1)	.	.	.
THEMIS	MAML2	-/.	-/.	6:127735531	11:96265971	intron	intron	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	ENSG00000184384	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2091),FP236383.3(121619)	FP236383.3	./.	+/.	21:8259024	21:8437074	intergenic	intron	inversion	0	0	0	6	55	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NELL1	CYFIP1	+/.	-/.	11:20759741	15:22959312	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165973	ENSG00000273749	.	.	downstream	upstream	mismatches(1)	.	.	.
AC106818.1(8857),FAM172A(5270)	Z98949.2	./.	-/.	5:93612455	22:25966679	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000232464	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF131	HMGB3P23(424799),RNA5SP281(223599)	+/.	./.	5:43074061	9:32069959	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000172262	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FXNP1(22691),NRXN3(87404)	FXNP1(22700),NRXN3(87395)	./.	./.	14:78082969	14:78082978	intergenic	intergenic	duplication/ITD	0	0	0	424	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DENND5B	BPY2	-/.	+/.	12:31477253	Y:22991791	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000170456	ENSG00000183753	.	.	upstream	upstream	mismatches(1)	.	.	.
AL033529.1	CNTNAP3C(78838),AL935212.3(49945)	+/.	./.	1:32507193	9:61531868	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL033529.1	AL157937.1(161651),DMRTA1(70501)	+/.	./.	1:32507193	9:22376323	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MLIP	AC079949.3	+/.	+/.	6:53961499	12:127165978	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146147	ENSG00000286016	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01495	LINC02302(16053),DOCK11P1(61434)	-/.	./.	11:22480925	14:44798882	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255323	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824769	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(41),low_entropy(8)	.	.	.
TOGARAM2	FAT1(23082),AC108865.1(141165)	+/.	./.	2:29042540	4:186749804	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000189350	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1374552	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	12:105046145	12:105046194	intron	intron	duplication/3'-3'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000136010	.	.	upstream	downstream	duplicates(280),low_entropy(20)	.	.	.
SLC52A1	FP236383.3	-/.	+/.	17:5035640	21:8397817	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000132517	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
TTLL3	LINC01271(39037),RN7SL636P(68811)	+/+	./-	3:9809808	20:50360379	5'UTR	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	UNC13B	./.	+/.	5:175198325	9:35181558	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000198722	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC011747.1(4440),ID2-AS1(39254)	LINC01320	./.	+/.	2:8627382	2:33767498	intergenic	intron	inversion	0	0	0	0	72	low	.	.	.	.	.	.	ENSG00000228262	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PPM1L	UBE2W	+/.	-/.	3:161057700	8:73820101	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163590	ENSG00000104343	.	.	upstream	upstream	mismatches(1)	.	.	.
AC034228.3	PTPRT	-/.	-/.	5:132011045	20:42944229	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000281938	ENSG00000196090	.	.	downstream	upstream	mismatches(1)	.	.	.
HTRA3	KRT19P4(10028),PBLD(11133)	+/.	./.	4:8306667	10:68271527	3'UTR	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000170801	.	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
HYDIN2	RPS18P6(199914),MTHFD2P1(282132)	+/.	./.	1:146551982	3:95372291	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749075	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	17:39481627	17:39481702	intron	intron	duplication/ITD	0	0	0	34	34	low	.	.	.	.	.	ENSG00000167258	ENSG00000167258	.	.	upstream	downstream	low_entropy(2)	.	.	.
OBP2A	FP236383.3	+/.	+/.	9:135549378	21:8442048	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000122136	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HMMR-AS1	THSD4	-/.	+/.	5:163483512	15:71484162	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000251018	ENSG00000187720	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02614	CDH8	-/.	-/.	3:125832550	16:61831043	intron	intron	translocation/3'-3'	0	0	0	0	57	low	.	.	.	.	.	ENSG00000241288	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01470	FP671120.4	-/.	+/.	5:153185386	21:8214784	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000249484	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
PLAGL1(20798),SF3B5(9487)	BCAS1	./.	-/.	6:144085397	20:53937774	intergenic	3'UTR	translocation	0	0	0	52	0	low	.	.	.	.	.	.	ENSG00000064787	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479904	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
ACVR1	FAT1	-/.	-/.	2:157748461	4:186598220	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115170	ENSG00000083857	.	.	downstream	downstream	mismatches(1)	.	.	.
AL356131.1(332830),MTRNR2L9(187)	5_8S_rRNA(1601),FP236383.3(122109)	./.	./.	6:61574141	21:8258534	intergenic	intergenic	translocation	0	0	0	65	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	DMRTC1B	+/.	+/.	21:8397819	X:72833386	intron	intron	translocation	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000184911	.	.	upstream	downstream	mismatches(1)	.	.	.
LRP1B	FP236383.3	-/.	+/.	2:141137947	21:8442067	intron	intron	translocation/3'-3'	0	0	0	8	6	low	.	.	.	.	.	ENSG00000168702	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA2012-AS1	AC124290.1	-/.	+/.	2:202083777	8:35870181	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000253452	.	.	downstream	downstream	mismatches(1)	.	.	.
XPC	PPEF1	-/.	+/.	3:14178231	X:18799787	intron	intron	translocation	0	0	0	11	6	low	.	.	.	.	.	ENSG00000154767	ENSG00000086717	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749055	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
AC117464.1(570118),LINC00971(16868)	FBXW5	./.	-/.	3:84621537	9:136943086	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AUTS2	LAMA5	+/.	-/.	7:70496960	20:62337135	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000158321	ENSG00000130702	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463100	15:45463193	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC099542.1	AL009177.1	-/.	+/.	3:81296432	6:14487262	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000241593	ENSG00000286277	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02466	A1CF	-/.	-/.	4:129613123	10:50848274	intron	intron	translocation	0	0	0	0	34	low	.	.	.	.	.	ENSG00000246876	ENSG00000148584	.	.	upstream	downstream	duplicates(13),mismatches(3)	.	.	.
EPHA6	PLAGL1(20798),SF3B5(9487)	+/.	./.	3:97695301	6:144085397	intron	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	ENSG00000080224	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CNTNAP5	5_8S_rRNA(2034),AC018688.1(58491)	+/.	./.	2:124309141	20:30487110	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000155052	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC116317.1	FP236383.3	-/-	+/+	4:6307991	21:8397815	exon	intron	translocation	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000286176	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
MTRNR2L12	MT-RNR2	-/.	+/.	3:96617935	MT:2217	5'UTR	exon	translocation/3'-3'	0	0	0	2	.	low	.	.	.	.	.	ENSG00000269028	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(2)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	LINC02419(47605),AC026336.4(1635)	./.	./.	3:95431526	12:130120290	intergenic	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
H3C10	AC121334.1(19777),AC121334.2(52459)	+/.	./.	6:27810927	12:39487122	3'UTR	intergenic	translocation	0	0	0	0	49	low	.	.	.	.	.	ENSG00000278828	.	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
RNU6-578P(119267),ECM1P2(207129)	RSU1	./.	-/.	4:12431957	10:16648478	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000148484	.	.	upstream	upstream	mismatches(1)	.	.	.
MYO5A	RPS27AP20(98222),BX890604.1(1706)	-/.	./.	15:52440807	X:3815822	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197535	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RGMB	AC140125.1(4942),AC106795.1(1121)	+/.	./.	5:98771438	5:177808286	intron	intergenic	inversion	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021205	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683463	15:81683472	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
AC061709.2(20923),AC061709.1(32088)	HYDIN	./.	-/.	12:128212418	16:71158143	intergenic	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	.	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
PPIE	MID1	+/.	-/.	1:39692386	X:10619146	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000084072	ENSG00000101871	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01287(16430),PAXBP1P1(19014)	MVB12B	./.	+/.	7:153430415	9:126367241	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000196814	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	AP001599.1	+/.	+/.	21:8395069	21:26914103	intron	intron	duplication	0	0	0	0	167	low	.	.	.	.	.	ENSG00000280441	ENSG00000223563	.	.	upstream	downstream	duplicates(12),mismatches(2)	.	.	.
DUSP16	FP671120.4	-/.	+/.	12:12553672	21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000111266	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	ADGB	./.	+/.	3:95431526	6:146750730	intergenic	intron	translocation	0	0	0	45	6	low	.	.	.	.	.	.	ENSG00000118492	.	.	downstream	downstream	duplicates(4),mismatches(4)	.	.	.
DUX4L21	PGLYRP1	+/+	-/+	10:133681454	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000275610	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
Z83840.1	LAPTM4B	-/-	+/+	22:41676807	8:97819578	exon	intron	translocation	0	0	0	0	2	low	.	.	|Golgi_4-transmembrane_spanning_transporter(76%)	.	.	ENSG00000285531	ENSG00000104341	.	.	upstream	upstream	mismatches(1)	.	.	.
FAF2	KLC1	+/+	+/+	5:176506922	14:103561968	CDS	5'UTR	translocation	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|Tetratricopeptide_repeat(100%)	.	.	ENSG00000113194	ENSG00000126214	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004687.2	FTHL17(104),DMD(25532)	-/.	./.	17:58385557	X:31072145	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000285897	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	Y_RNA(5800),MAP7D2(15754)	+/.	./.	21:8216871	X:19990959	intron	intergenic	translocation	0	0	0	1	18	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02864	FP671120.4	-/.	+/.	18:73168245	21:8214396	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000263711	ENSG00000278996	.	.	upstream	upstream	duplicates(18),mismatches(13)	.	.	.
LINC01470	FP236383.3	-/.	+/.	5:153185380	21:8442064	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000249484	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
DRAIC	SIAH1P1	+/.	+/.	15:69793515	X:35626738	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000245750	ENSG00000230227	.	.	upstream	upstream	mismatches(1)	.	.	.
ZBTB40(31269),EPHA8(1063)	ARL5A	./.	-/.	1:22562426	2:151828393	intergenic	5'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000162980	.	.	upstream	downstream	mismatches(1)	.	.	.
DHRS2(46906),AL160237.1(7252)	RNU7-155P(125409),AC118653.1(172711)	./.	./.	14:23692545	17:71423627	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CNTNAP3P2	AC104574.2	+/.	-/.	9:67208833	15:61611250	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000276386	ENSG00000259616	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479801	10:104479824	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CEMIP2(21729),ABHD17B(24033)	SQSTM1P1(123822),AL445668.1(8613)	./.	./.	9:71838419	13:62530738	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
BRPF3	SHISA6	+/.	+/.	6:36197953	17:11337251	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000096070	ENSG00000188803	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
WNT5B	FP236383.3	+/.	+/.	12:1530663	21:8397825	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000111186	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
FP236383.3	AC004882.1(46),CABP7(98)	+/.	./.	21:8399949	22:29719905	intron	intergenic	translocation	0	0	0	205	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01320	ARID5B	+/.	+/.	2:33767504	10:61903188	intron	intron	translocation/5'-5'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228262	ENSG00000150347	.	.	downstream	downstream	mismatches(1)	.	.	.
H3C10	FP671120.4	+/.	+/.	6:27810928	21:8211705	3'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	ENSG00000278996	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
CENPC(6847),STAP1(6377)	FP236383.3	./.	+/.	4:67552350	21:8397828	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL358033.1(24237),FTLP19(41256)	MT-RNR1	./.	+/.	10:16030160	MT:1502	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
TLE4	SALL2	+/.	-/.	9:79572889	14:21526052	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000165821	.	.	downstream	downstream	mismatches(1)	.	.	.
PDPN	LINC01495	+/.	-/.	1:13583782	11:22480925	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162493	ENSG00000255323	.	.	upstream	upstream	mismatches(1)	.	.	.
TTLL3	GPA33	+/+	-/+	3:9809808	1:167082702	5'UTR	intron	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000143167	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AF117829.1	SLC5A11	-/.	+/.	8:89706870	16:24883973	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000251136	ENSG00000158865	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC12A8	LIPI	-/.	-/.	3:125150511	21:14210200	intron	intron	translocation/3'-3'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	ENSG00000188992	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ZZEF1	AP005264.4	-/-	+/+	17:4006401	18:12215239	3'UTR	intron	translocation	0	0	0	0	6	low	.	.	Anaphase-promoting_complex__subunit_10_(APC10)(100%),Zinc_finger__ZZ_type(100%)|	.	.	ENSG00000074755	ENSG00000267733	.	.	upstream	upstream	mismatches(1)	.	.	.
AC091182.1(10763),AC091182.2(62685)	AL008633.1	./.	-/.	8:37342754	X:128358152	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000225689	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00351(70066),AL356413.1(79301)	PRKD1	./.	-/.	13:85614636	14:29782394	intergenic	intron	translocation	0	0	0	5	9	low	.	.	.	.	.	.	ENSG00000184304	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
5_8S_rRNA(2687),AC018688.1(57838)	FP236383.3	./.	+/.	20:30487763	21:8442044	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
TBC1D2B	MT-RNR1	-/.	+/.	15:78059564	MT:950	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000167202	ENSG00000211459	.	.	upstream	upstream	duplicates(2),uninteresting_contigs(2)	.	.	.
AL357094.1(16891),KRT8P1(104286)	BANF2(94730),AL035045.1(56762)	./.	./.	14:38622989	20:17830601	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	ANP32B	./.	+/.	2:53114408	9:97983499	intergenic	5'UTR	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000136938	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008269.1	TFB1M	+/.	-/.	2:206862123	6:155280046	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	ENSG00000029639	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683470	15:81683479	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
NECTIN1	AP003390.1(4426),AP001994.1(77255)	-/.	./.	11:119665347	11:119744049	intron	intergenic	deletion/read-through	0	0	0	1	3711	low	.	.	.	.	.	ENSG00000110400	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ITPKB	ITIH5(434),ITIH2(35884)	-/.	./.	1:226675840	10:7667432	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000143772	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	ZNF414	./.	-/.	8:37342743	19:8513924	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000133250	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008269.1	SQSTM1P1(123822),AL445668.1(8613)	+/.	./.	2:206862123	13:62530738	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	.	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
GALNS	FP236383.3	-/.	+/.	16:88834370	21:8442045	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000141012	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AL589740.1	SNX1	+/.	+/.	6:97984485	15:64095912	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000271860	ENSG00000028528	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683463	15:81683472	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214403	21:8394740	intron	intron	inversion/3'-3'	0	0	0	8	154	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
COL11A1	COL11A1	-/.	-/.	1:102945248	1:102945263	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000060718	ENSG00000060718	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AL049828.1	FP236383.3	+/.	+/.	14:40135480	21:8400582	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000258526	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NRP1	AC007513.1	-/.	-/.	10:33334709	12:96462686	5'UTR	intron	translocation/3'-3'	0	0	0	21	1	low	.	.	.	.	.	ENSG00000099250	ENSG00000258272	.	.	downstream	downstream	mismatches(1)	.	.	.
BX640514.2(17466),AL450469.2(12860)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	20:62620821	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
APBA2	SETP8(279570),AC005002.1(154692)	+/.	./.	15:29078666	X:117243246	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000034053	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	NDUFB9P3(84563),LINC01608(5539)	./.	./.	2:240393940	8:110894457	intergenic	intergenic	translocation	0	0	0	357	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(11),mismatches(13)	.	.	.
AL954642.1(759),FAM157B(12984)	PPP6R3	./.	+/.	9:138204084	11:68530290	intergenic	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	.	ENSG00000110075	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	21:39679813	21:39679822	intron	intron	duplication/ITD	0	0	0	34	30	low	.	.	.	.	.	ENSG00000225330	ENSG00000225330	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96618115	21:8397443	5'UTR	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
LRRC34P2(14318),SRD5A3(18000)	Z98752.3	./.	+/.	4:55328242	20:43556450	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000277611	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC6A14	SLC6A14	+/.	+/.	X:116445453	X:116445505	intron	intron	duplication/ITD	0	0	0	19	17	low	.	.	.	.	.	ENSG00000268104	ENSG00000268104	.	.	upstream	downstream	duplicates(5),low_entropy(5)	.	.	.
H3C10	TFB1M	+/.	-/.	6:27810927	6:155280046	3'UTR	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	ENSG00000029639	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394722	21:8420132	intron	intron	inversion/3'-3'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
MCTP1	ZNF462	-/.	+/.	5:94947578	9:106864056	intron	intron	translocation	0	0	0	15	38	low	.	.	.	.	.	ENSG00000175471	ENSG00000148143	.	.	upstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	X:31138631	X:31138640	intron	intron	duplication/ITD	0	0	0	22	0	low	.	.	.	.	.	ENSG00000198947	ENSG00000198947	.	.	upstream	downstream	low_entropy(1)	.	.	.
DHFR	5_8S_rRNA(1695),FP236383.3(122015)	-/.	./.	5:80650927	21:8258628	intron	intergenic	translocation	0	0	0	81	44	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
MFF-DT	H3C10	-/-	+/+	2:227268528	6:27810927	exon	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236432	ENSG00000278828	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
AC104109.3	PRKCA	-/.	+/.	5:134225648	17:66712001	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272772	ENSG00000154229	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR3649(9042),ADIPOR2(19152)	FP236383.3	./.	+/.	12:1669422	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.5	TTTY2B	-/-	-/-	21:8437806	Y:6414449	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281181	ENSG00000212856	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479899	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
LINC00293	MT-RNR2	+/.	+/.	8:46829757	MT:2443	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000253314	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(2)	.	.	.
GAPDHP75(532267),RNA5SP73(590)	AC008083.2(38156),PPIAP45(24437)	./.	./.	1:189665559	12:47317177	intergenic	intergenic	translocation	0	0	0	9	5	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	Y_RNA(3569),LCN1P2(11662)	./.	./.	8:17155256	9:133306132	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
OR52K3P	UTRN	+/+	+/+	11:4475690	6:144315697	exon	intron	translocation	0	0	0	2	1	low	.	.	|Calponin_homology_(CH)_domain(100%),EF-hand(100%),EF_hand(100%),Spectrin_repeat(100%),WW_domain(100%),Zinc_finger__ZZ_type(100%)	.	.	ENSG00000225101	ENSG00000152818	.	.	downstream	upstream	mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	ATP1B4	./.	+/.	15:26358594	X:120373888	intergenic	intron	translocation	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000101892	.	.	downstream	upstream	duplicates(7),mismatches(2)	.	.	.
DDB2	ANKRD34C-AS1	+/.	-/.	11:47233105	15:79162039	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000259234	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TFB1M	GDA	-/.	+/.	6:155280046	9:72149977	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000029639	ENSG00000119125	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
AC009161.1(206443),AC009110.1(32183)	Z93403.1	./.	+/.	16:62564189	X:42277880	intergenic	intron	translocation	0	0	0	0	31	low	.	.	.	.	.	.	ENSG00000231772	.	.	upstream	upstream	mismatches(1)	.	.	.
ERCC8	BANP	-/.	+/.	5:60944731	16:88057771	intron	intron	translocation	0	0	0	8	1	low	.	.	.	.	.	ENSG00000049167	ENSG00000172530	.	.	downstream	downstream	mismatches	.	.	.
AC123777.1	AL162417.1	-/.	-/.	8:12794050	9:133148049	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000254813	ENSG00000285245	.	.	downstream	upstream	mismatches(1)	.	.	.
AL358177.1(126006),C1orf100(39070)	SEC14L5	./.	+/.	1:244313565	16:4988032	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000103184	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LRIG1(13014),AC104440.1(108483)	CRADD	./.	+/.	3:66514277	12:93846255	intergenic	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC009303.2	CALCR	+/+	-/-	2:118055017	7:93457803	exon	intron	translocation	0	0	0	24	0	low	.	.	|7_transmembrane_receptor_(Secretin_family)(70%)	.	.	ENSG00000235066	ENSG00000004948	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
GPR39	AC022384.1	+/.	+/.	2:132557874	3:10249513	intron	CDS	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000272410	.	.	downstream	upstream	mismatches(2)	.	.	.
AP000255.1(48511),TPT1P1(55423)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784918	21:31785031	intergenic	intergenic	duplication	0	0	0	191	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
MTRNR2L12	MT-RNR2	-/.	+/.	3:96617942	MT:2225	5'UTR	exon	translocation/3'-3'	0	0	0	3	.	low	.	.	.	.	.	ENSG00000269028	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(3)	.	.	.
MBD5(25581),RPS29P8(52606)	NUP214	./.	+/.	2:148542552	9:131197615	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000126883	.	.	upstream	upstream	mismatches(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	10:80511716	10:80511727	intron	intron	duplication/ITD	0	0	0	17	11	low	.	.	.	.	.	ENSG00000108219	ENSG00000108219	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RBBP4	FBXL16	+/+	-/+	1:32651582	16:694839	5'UTR	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000162521	ENSG00000127585	.	.	downstream	upstream	mismatches(1)	.	.	.
AC122688.4(18607),TMEM132B(3311)	IFNL3P1(4589),IFNL3(1671)	./.	./.	12:125183525	19:39241882	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL10L(115581),MDGA2(72267)	MT-RNR2	./.	+/.	14:46767362	MT:2714	intergenic	exon	translocation	0	0	0	5	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
XPC	AL353595.1	-/.	+/.	3:14178231	9:11645402	intron	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000154767	ENSG00000285784	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS7P4(20383),COX6B1P7(18950)	FP236383.3	./.	+/.	1:68263438	21:8397434	intergenic	intron	translocation	0	0	0	3	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
RN7SL680P(78629),AL132981.1(227304)	RN7SL680P(78642),AL132981.1(227291)	./.	./.	20:39428021	20:39428034	intergenic	intergenic	duplication/ITD	0	0	0	7	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
SLC10A6	RUFY4(18122),CXCR2(16586)	-/-	./-	4:86848789	2:218108703	CDS	intergenic	translocation	0	0	0	0	193	low	.	.	Sodium_Bile_acid_symporter_family(40%)|	.	.	ENSG00000145283	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
DYNLL2	AC004687.2	+/.	-/.	17:58083857	17:58385558	intron	intron	duplication/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000264364	ENSG00000285897	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GDA	AC121334.1(19777),AC121334.2(52459)	+/.	./.	9:72149977	12:39487122	intron	intergenic	translocation	0	0	0	0	49	low	.	.	.	.	.	ENSG00000119125	.	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
FMN2	GDA	+/.	+/.	1:240200874	9:72149977	intron	intron	translocation	0	0	0	49	0	low	.	.	.	.	.	ENSG00000155816	ENSG00000119125	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
AL158151.1	FP236383.3	+/.	+/.	9:129178735	21:8397829	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000204055	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FARS2	DNMT3L-AS1	+/.	+/.	6:5782068	21:44250998	intron	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000145982	ENSG00000232010	.	.	downstream	downstream	mismatches(1)	.	.	.
CSRNP3	TCF4	+/.	-/.	2:165579357	18:55380907	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178662	ENSG00000196628	.	.	downstream	upstream	mismatches(1)	.	.	.
B3GNT7(4009),ZBTB8OSP2(28750)	RNA5SP291(191926),AL590381.1(118252)	./.	./.	2:231405173	9:103881503	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8442052	21:8442079	intron	intron	duplication/ITD	0	0	0	5962	6003	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	hairpin(1)	.	.	.
RPS26P24(63427),LINC02380(7739)	RPL6P21(23501),DGKB(50168)	./.	./.	4:57416756	7:14094881	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL583785.1	LGALS3BP	+/-	-/-	9:13767561	17:78973001	intron	CDS	translocation/3'-3'	0	0	0	0	4	low	.	.	|BTB_And_C-terminal_Kelch(100%)	.	.	ENSG00000226197	ENSG00000108679	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
LMBRD2	DTNBP1(49300),ARPC3P5(222424)	-/.	./.	5:36127872	6:15712358	intron	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000164187	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NRIP3	LINC01608	-/-	-/+	11:9003964	8:110977286	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000253877	.	.	upstream	upstream	mismatches(1)	.	.	.
AC108073.3	SLCO5A1	-/.	-/.	4:187943696	8:69690369	exon	intron	translocation/3'-3'	0	0	0	13	53	low	.	.	.	.	.	ENSG00000286641	ENSG00000137571	.	.	downstream	downstream	mismatches(1)	.	.	.
AP004606.1	AP004606.1	+/.	+/.	11:133544834	11:133544843	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000287068	ENSG00000287068	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
SEC14L5	FP236383.3	+/+	+/+	16:5011163	21:8397817	CDS	intron	translocation	0	0	0	4	6042	low	.	.	CRAL/TRIO__N-terminal_domain(100%),CRAL/TRIO_domain(100%),PRELI-like_family(100%)|	.	.	ENSG00000103184	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AL589986.2	CLEC11A	+/.	+/.	1:152206895	19:50725294	exon	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236427	ENSG00000105472	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8212343	21:8442056	intron	intron	deletion/read-through	0	0	0	28	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(6)	.	.	.
PID1	AC010343.3	-/.	-/.	2:229133635	5:33073827	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000153823	ENSG00000250697	.	.	upstream	downstream	mismatches(1)	.	.	.
HES4	MTRNR2L12	-/-	-/-	1:999810	3:96618115	CDS	5'UTR	translocation	0	0	0	0	75	low	.	.	Helix-loop-helix_DNA-binding_domain(3%)|Humanin_family(100%)	.	.	ENSG00000188290	ENSG00000269028	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SYT2	HECW1	-/.	+/.	1:202691724	7:43336127	intron	intron	translocation	0	0	0	22	25	low	.	.	.	.	.	ENSG00000143858	ENSG00000002746	.	.	upstream	upstream	mismatches	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275723	13:49275796	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	duplicates(12),low_entropy(1),merge_adjacent	.	.	.
STK38(8453),SRSF3(38421)	STK38(8515),SRSF3(38359)	./.	./.	6:36555932	6:36555994	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP671120.7	AC079193.1(4368),ZDHHC2(1226)	-/-	./-	21:8254769	8:17155256	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281383	.	.	.	upstream	downstream	duplicates(2),mismatches(4)	.	.	.
PPP1R1C	TMEM198B	+/+	+/-	2:182129722	12:55832665	3'UTR	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	Protein_phosphatase_inhibitor_1/DARPP-32(100%)|	.	.	ENSG00000150722	ENSG00000182796	.	.	downstream	downstream	mismatches(1)	.	.	.
NBPF12	FP236383.3	+/.	+/.	1:146992619	21:8397434	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000268043	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NAGPA-AS1	FP671120.4	+/+	+/+	16:5011163	21:8214783	exon	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000267072	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
AC092757.2	MT-RNR2	+/.	+/.	15:59122737	MT:2714	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000259732	ENSG00000210082	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
AC011747.1(4440),ID2-AS1(39254)	ROBO2(144773),RNU6-217P(17004)	./.	./.	2:8627382	3:77794737	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ALOX15(16236),PELP1(11244)	TBC1D17	./.	+/.	17:4658530	19:49888368	intergenic	intron	translocation	0	0	0	5	3	low	.	.	.	.	.	.	ENSG00000104946	.	.	downstream	downstream	mismatches(1)	.	.	.
AC004911.1(110528),DPY19L4P2(202285)	A1CF	./.	-/.	7:145380912	10:50848274	intergenic	intron	translocation	0	0	0	0	34	low	.	.	.	.	.	.	ENSG00000148584	.	.	downstream	downstream	mismatches(1)	.	.	.
DHFR	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	5:80650918	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
GBE1	AC005524.1(60141),MAN1A2P1(2894)	-/.	./.	3:81729494	19:28787918	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000114480	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DSC2	HBB	-/-	-/-	18:31069001	11:5225537	CDS	3'UTR	translocation	0	0	0	0	91	low	.	.	Cadherin_domain(100%),Cadherin_prodomain_like(100%)|	.	.	ENSG00000134755	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2096),FP236383.3(121614)	AL731768.1(245335),SRIP2(139747)	./.	./.	21:8259029	X:89227688	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),homopolymer(2)	.	.	.
AC084337.2	FP236383.10(126826),RPSAP68(8090)	+/.	./.	11:6496218	21:8595457	intron	intergenic	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
WASHC3	ETV4	-/.	-/.	12:102035145	17:43546410	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120860	ENSG00000175832	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
OBP2B	5_8S_rRNA(2080),FP236383.3(121630)	-/.	./.	9:133205870	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000171102	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRIM53AP	LINC01484	-/-	-/+	11:89999343	5:173742753	exon	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000225581	ENSG00000253686	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM18-DT(23495),AC092159.1(3317)	PPP4R3A(8536),AL133373.2(35320)	./.	./.	2:720877	14:91519090	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TATDN2	LETM1	+/.	-/.	3:10249514	4:1841520	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211687	21:8420132	intron	intron	inversion/3'-3'	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	5:175967559	15:45462226	intron	intron	translocation/5'-5'	0	0	0	67	29	low	.	.	.	.	.	ENSG00000051596	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
FIBIN(9775),BBOX1(33863)	AC005258.1	./.	+/.	11:27006862	19:2338920	intergenic	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	.	ENSG00000273734	.	.	downstream	downstream	mismatches(1)	.	.	.
DLG2	FP236383.3	-/.	+/.	11:85484195	21:8394740	intron	intron	translocation	0	0	0	279	154	low	.	.	.	.	.	ENSG00000150672	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
RPS10	PHKG2	-/.	+/.	6:34421330	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000124614	ENSG00000156873	.	.	upstream	downstream	mismatches(1)	.	.	.
ERI3	FTH1P5(85248),AL158050.2(386778)	-/.	./.	1:44320094	6:50998504	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC105252.1(292282),AC079380.1(3756)	CAST	./.	+/.	4:133867490	5:96664242	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000153113	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214793	21:8214817	intron	intron	duplication/ITD	0	0	0	5263	6035	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	hairpin(1),merge_adjacent	.	.	.
HIVEP2	LINC02335(6080),MIR5007(6884)	-/.	./.	6:142946392	13:55167570	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	Y_RNA(5788),MAP7D2(15766)	+/.	./.	21:8444140	X:19990947	intron	intergenic	translocation	0	0	0	19	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
OTUD7A	AC084337.2	-/-	+/+	15:31870675	11:6496218	5'UTR	intron	translocation	0	0	0	0	101	low	.	.	.	.	.	ENSG00000169918	ENSG00000283977	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
GCC2	RPL29(29541),AC115284.3(21327)	+/.	./.	2:108492236	3:52025436	intron	intergenic	translocation	0	0	0	17	8	low	.	.	.	.	.	ENSG00000135968	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AL365259.1	LINC02459(32871),TBX5(79270)	-/.	./.	6:125747933	12:114274641	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000237742	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BTBD9	PLAGL1(20798),SF3B5(9487)	-/.	./.	6:38485830	6:144085397	intron	intergenic	deletion	0	0	0	0	52	low	.	.	.	.	.	ENSG00000183826	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00692(18212),RPEP2(123709)	STEAP2-AS1	./.	-/.	3:25891960	7:89935172	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000227646	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ELP1	PHKG2	-/-	+/-	9:108866913	16:30749091	exon	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	IKI3_family(100%)|	.	.	ENSG00000070061	ENSG00000156873	.	.	upstream	downstream	mismatches(1)	.	.	.
H3C10	MTRNR2L8	+/.	-/.	6:27810929	11:10508411	3'UTR	5'UTR	translocation/3'-3'	0	0	0	0	70	low	.	.	.	.	.	ENSG00000278828	ENSG00000255823	.	.	upstream	downstream	mismatches(1)	.	.	.
THOC3	ZNF462	-/.	+/.	5:175967559	9:106877178	intron	intron	translocation	0	0	0	67	3	low	.	.	.	.	.	ENSG00000051596	ENSG00000148143	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749073	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
HIVEP2	SMARCE1P4(197414),AC091182.1(33771)	-/.	./.	6:142946389	8:37292804	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HSD11B1L	UAP1L1(153),MAN1B1-DT(254)	+/+	./+	19:5681242	9:137084692	5'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167733	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL356131.1(332834),MTRNR2L9(183)	AC087482.1	./.	-/.	6:61574145	15:67040912	intergenic	intron	translocation	0	0	0	65	8	low	.	.	.	.	.	.	ENSG00000259347	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01854(94047),PPIAP65(128402)	PALM	./.	+/.	2:129367895	19:709434	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000099864	.	.	upstream	downstream	mismatches(1)	.	.	.
ENPP2(15276),RN7SKP153(23101)	KRT19P4(10027),PBLD(11134)	./.	./.	8:119688729	10:68271526	intergenic	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
KIAA2012-AS1	FP236383.3	-/.	+/.	2:202083780	21:8392868	intron	intron	translocation/3'-3'	0	0	0	0	43	low	.	.	.	.	.	ENSG00000222035	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
WAC	TSPOAP1-AS1	+/+	+/-	10:28533924	17:58385558	5'UTR	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000095787	ENSG00000265148	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SEMA5B(2024),PDIA5(36396)	SEMA5B(2033),PDIA5(36387)	./.	./.	3:123030629	3:123030638	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
LINC02663(164937),LINC02670(15725)	FP236383.3	./.	+/.	10:10042997	21:8397440	intergenic	intron	translocation	0	0	0	5	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CLVS2(48774),TRDN(94640)	LAMA3	./.	+/.	6:123121699	18:23701681	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000053747	.	.	upstream	downstream	mismatches(1)	.	.	.
CDK13	ROBO2(144773),RNU6-217P(17004)	+/+	./+	7:39951169	3:77794737	CDS	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000065883	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
B3GAT1-DT	FP671120.4	+/.	+/.	11:134501044	21:8209905	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255545	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AL356361.3	AL355836.3	+/+	-/-	1:240008262	14:101193601	exon	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000287102	ENSG00000288245	.	.	downstream	downstream	mismatches(2)	.	.	.
PRLHR(2948),TOMM22P5(45164)	AC022098.1	./.	+/.	10:118598596	19:14137787	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000267169	.	.	downstream	downstream	mismatches(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872802	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	mismatches(2)	.	.	.
XKR6	AC009169.1(18144),RPS27AP16(108714)	-/.	./.	8:11122769	16:60946685	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000171044	.	.	.	downstream	downstream	mismatches(1)	.	.	.
JAK1	PLS1	-/.	+/.	1:64860342	3:142644949	intron	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000162434	ENSG00000120756	.	.	upstream	downstream	mismatches(1)	.	.	.
AL512638.2(11092),ELOCP20(64162)	FP236383.3	./.	+/.	1:115492664	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
TTLL3	CFAP74	+/+	-/+	3:9809808	1:1930367	5'UTR	intron	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000142609	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NOS1	TRPC5	-/-	-/+	12:117265422	X:111798474	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	ENSG00000072315	.	.	upstream	upstream	mismatches(1)	.	.	.
PPARGC1A(608958),DHX15(4394)	FP236383.3	./.	+/.	4:24513047	21:8442048	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RGMB-AS1	AC140125.1(4942),AC106795.1(1121)	-/.	./.	5:98771438	5:177808286	intron	intergenic	inversion	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC117457.1	AC117457.1	+/.	+/.	3:178655090	3:178655101	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000275163	ENSG00000275163	.	.	upstream	downstream	low_entropy(1)	.	.	.
RNA5SP291(191926),AL590381.1(118252)	RPL11P5(15458),AC125616.1(18824)	./.	./.	9:103881503	12:120610006	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NANOGP1(7193),SLC2A3(11897)	LINC02864	./.	-/.	12:7907333	18:73168244	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AL080313.1	./.	+/.	2:240393940	6:14402223	intergenic	intron	translocation	0	0	0	357	4	low	.	.	.	.	.	.	ENSG00000234540	.	.	upstream	downstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	SSPOP	./.	+/.	2:218108703	7:149787750	intergenic	exon	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000197558	.	.	downstream	upstream	duplicates(5),homopolymer(4)	.	.	.
CFAP58	AP001823.1(3430),ELMOD1(758)	+/.	./.	10:104396370	11:107590333	intron	intergenic	translocation	0	0	0	558	1909	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
PIN1P1	ERI3	+/+	-/-	1:69919784	1:44320096	exon	intron	inversion	0	0	0	6	67	low	.	.	|Exonuclease(90%)	.	.	ENSG00000229359	ENSG00000117419	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
FP236383.3	CHODL	+/.	+/.	21:8400582	21:18199582	intron	intron	inversion/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000154645	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097714.1(12520),RBPJ(37096)	TBC1D17	./.	+/.	4:26126359	19:49888369	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000104946	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.5	CDH8	-/-	-/-	21:8437806	16:61831043	exon	intron	translocation	0	0	0	2	57	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000281181	ENSG00000150394	.	.	upstream	downstream	duplicates(2),mismatches(4)	.	.	.
SELENOH	FMN1	+/.	-/.	11:57741634	15:32839930	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000211450	ENSG00000248905	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8212343	21:8397826	intron	intron	deletion/read-through	0	0	0	28	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(6)	.	.	.
RBFOX1	5_8S_rRNA(2076),FP236383.3(121634)	+/.	./.	16:7555421	21:8259009	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000078328	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	AL731768.1(245335),SRIP2(139747)	+/.	./.	21:8214800	X:89227688	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	duplicates(2),homopolymer(2)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22761),NRXN3(87334)	./.	./.	14:78082946	14:78083039	intergenic	intergenic	duplication/ITD	0	0	0	336	401	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SLCO5A1	AC022743.1(484045),AC083760.1(55590)	-/.	./.	8:69690369	18:43983881	intron	intergenic	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	TENT5D	+/.	+/.	21:8441948	X:80336904	intron	intron	translocation/3'-3'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000174016	.	.	upstream	upstream	mismatches(1)	.	.	.
KIAA2012	ALG13	+/.	+/.	2:202083777	X:111681864	intron	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000182329	ENSG00000101901	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NF1	UPK3A	+/.	+/.	17:31130989	22:45294083	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000196712	ENSG00000100373	.	.	downstream	downstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	TOX	./.	-/.	8:49417336	8:58874726	intergenic	intron	inversion	0	0	0	30	0	low	.	.	.	.	.	.	ENSG00000198846	.	.	upstream	upstream	mismatches(1)	.	.	.
A1CF	SOX21-AS1(58796),LINC00557(97815)	-/.	./.	10:50848272	13:94862226	intron	intergenic	translocation	0	0	0	34	0	low	.	.	.	.	.	ENSG00000148584	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	OCA2	./.	-/.	4:36965705	15:27980957	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000104044	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZDHHC14	AC022915.2	+/.	+/.	6:157398083	8:48551626	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175048	ENSG00000253608	.	.	upstream	upstream	mismatches(1)	.	.	.
AC116317.1	FP671120.4	-/-	+/+	4:6307991	21:8214781	exon	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000286176	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
AC093875.1(209859),LINC02511(32321)	RPSAP52	./.	-/.	4:136763598	12:65767071	intergenic	intron	translocation	0	0	0	8	5	low	.	.	.	.	.	.	ENSG00000241749	.	.	upstream	downstream	mismatches(1)	.	.	.
ANKLE1(1013),ABHD8(3472)	MID1	./.	-/.	19:17288659	X:10619145	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101871	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22675),NRXN3(87420)	FXNP1(22773),NRXN3(87322)	./.	./.	14:78082953	14:78083051	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
SCRN1	AC005225.2(1331),DNAL1(9603)	-/.	./.	7:29989908	14:73635272	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000136193	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.11(2065),FP236383.6(391)	+/.	./.	21:8438935	21:8464863	intron	intergenic	inversion	0	0	0	159	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC01470	FP236383.3	-/.	+/.	5:153185386	21:8442048	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000249484	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
GLYATL1	FP236383.3	+/.	+/.	11:58919736	21:8442048	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000166840	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
CYP26B1	KDM4C	-/.	+/.	2:72140195	9:7086288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000003137	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
CRADD	PPIHP2(86965),XACT(6346)	+/.	./.	12:93846255	X:113609954	intron	intergenic	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	.	.	.	downstream	upstream	mismatches(2)	.	.	.
AC025366.1(57830),AP005357.1(76639)	NRP1	./.	-/.	8:110690224	10:33334709	intergenic	5'UTR	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000099250	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	CCDC178	-/.	-/.	3:96617943	18:32975568	5'UTR	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
CBLB(204073),AC131237.1(86792)	5_8S_rRNA(2177),FP236383.3(121533)	./.	./.	3:106073625	21:8259110	intergenic	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	7:129531132	15:45463186	intergenic	intron	translocation	0	0	0	68	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC084030.1(41164),AC012063.1(115270)	EYA2	./.	+/.	2:236795527	20:47029375	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000064655	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL12P4(19716),LINC01440(314042)	LSM14B	./.	+/.	20:55094856	20:62131771	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479893	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
5_8S_rRNA(2803),FP236383.3(120907)	AP001347.1	./.	+/.	21:8259736	21:14100748	intergenic	intron	duplication	0	0	0	4	1	low	.	.	.	.	.	.	ENSG00000224905	.	.	upstream	downstream	mismatches(1)	.	.	.
DNTT	AC006504.5	+/.	+/.	10:96333569	19:27961842	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000107447	ENSG00000267575	.	.	downstream	upstream	mismatches(4)	.	.	.
SNX16	LINC02620	-/.	-/.	8:81842457	10:104479886	intron	intron	translocation	0	0	0	67	2216	low	.	.	.	.	.	ENSG00000104497	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
LINC02864	FP236383.3	-/.	+/.	18:73168245	21:8441654	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000263711	ENSG00000280441	.	.	upstream	upstream	duplicates(18),mismatches(13)	.	.	.
RPL6P21(23500),DGKB(50169)	RPL7AP52(53477),CYP2C9(1838)	./.	./.	7:14094880	10:94936820	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02549	AC090204.1	-/.	+/.	6:68230113	8:33013508	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226497	ENSG00000247134	.	.	upstream	upstream	mismatches(1)	.	.	.
MFF-DT	RPL6P21(23500),DGKB(50169)	-/.	./.	2:227288558	7:14094880	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000236432	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01287	NDUFA1(11969),AKAP14(7206)	-/.	./.	7:153410186	X:119888631	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234722	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396370	10:104396457	intron	intron	duplication/ITD	0	0	0	558	554	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	small_insert_size	.	.	.
UBBP4	CEACAM21	+/.	+/.	17:22095184	19:41564259	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000263563	ENSG00000007129	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM19	HYDIN	+/.	-/.	12:71698816	16:71158143	intron	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	ENSG00000139291	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
DNMT3A	RNA5SP378(9753),RNU6-1017P(4076)	-/-	./-	2:25233118	12:131811187	3'UTR	intergenic	translocation	0	0	0	2	1	low	.	.	C-5_cytosine-specific_DNA_methylase(100%),Cysteine_rich_ADD_domain_in_DNMT3(100%),PWWP_domain(100%)|	.	.	ENSG00000119772	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683458	15:81683469	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	GDA	./.	+/.	3:103984260	9:72149977	intergenic	intron	translocation	0	0	0	83	0	low	.	.	.	.	.	.	ENSG00000119125	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
AC188616.1	ERI3	-/-	-/-	7:331248	1:44320094	exon	intron	translocation	0	0	0	0	67	low	.	.	|Exonuclease(90%)	.	.	ENSG00000287342	ENSG00000117419	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC004687.2	AC091691.3(4145),AC091691.2(3107)	-/.	./.	17:58385558	18:71212511	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000285897	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C1orf35	HOXC6	-/-	+/+	1:228102036	12:54029879	exon	CDS	translocation	0	0	0	10	1	low	.	.	Multiple_myeloma_tumor-associated(100%)|	.	.	ENSG00000143793	ENSG00000197757	.	.	upstream	upstream	homopolymer(1)	.	.	.
RBFOX1	ZIC3	+/.	+/.	16:6222317	X:137574880	intron	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	ENSG00000078328	ENSG00000156925	.	.	upstream	downstream	mismatches(1)	.	.	.
AC116317.1	5_8S_rRNA(2077),FP236383.3(121633)	-/-	./+	4:6307991	21:8259010	exon	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000286176	.	.	.	upstream	upstream	mismatches	.	.	.
LINC01841(5040),ADGRE5(5265)	KRT8P17(4589204),SSBL2P(203913)	./.	./.	19:14375236	X:62575337	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC008817.1(51572),OXCT1(90706)	CKAP5	./.	-/.	5:41639359	11:46754528	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175216	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02745	OR6C70	-/.	-/.	11:42029390	12:55469553	intron	CDS	translocation	0	0	0	9	2	low	.	.	.	.	.	ENSG00000255300	ENSG00000184954	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.7	TTTY2B	-/-	-/-	21:8254769	Y:6414449	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281383	ENSG00000212856	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479899	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
C1orf35	AC114684.1(11577),AC016866.3(37588)	-/-	./+	1:228102036	18:48975518	exon	intergenic	translocation	0	0	0	10	0	low	.	.	Multiple_myeloma_tumor-associated(100%)|	.	.	ENSG00000143793	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC093627.22	AC022748.2	-/.	+/.	7:117610	15:78672957	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000261303	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
CADM2	AL590240.2	+/.	+/.	3:85836874	X:55141514	intron	intron	translocation/3'-3'	0	0	0	19	6	low	.	.	.	.	.	ENSG00000175161	ENSG00000276929	.	.	upstream	upstream	mismatches(1)	.	.	.
FNDC3B	FNDC3B	+/.	+/.	3:172358955	3:172358995	intron	intron	duplication/ITD	0	0	0	141	141	low	.	.	.	.	.	ENSG00000075420	ENSG00000075420	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
DNHD1	RPL24P9(223684),AC074035.1(449955)	+/.	./.	11:6501874	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000179532	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GBP7	KIAA2012	-/.	+/.	1:89154926	2:202083777	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000213512	ENSG00000182329	.	.	downstream	downstream	mismatches(1)	.	.	.
PDE7A	FP236383.3	-/.	+/.	8:65841567	21:8442047	5'UTR	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000205268	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
DLG2	KC6	-/.	-/.	11:85484187	18:41599645	intron	intron	translocation/5'-5'	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000267313	.	.	upstream	upstream	homopolymer(1)	.	.	.
PPARGC1A(608958),DHX15(4394)	5_8S_rRNA(2080),FP236383.3(121630)	./.	./.	4:24513047	21:8259013	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RNF43	UNC13A	-/.	-/.	17:58385558	19:17686852	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000108375	ENSG00000130477	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAT1	C7orf33	-/.	+/.	4:186598218	7:148605538	intron	intron	translocation/3'-3'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000083857	ENSG00000170279	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFHX4-AS1	FP671120.4	-/.	+/.	8:76667139	21:8214396	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000253661	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
CCM2L	5_8S_rRNA(2079),FP236383.3(121631)	+/+	./+	20:32014991	21:8259012	CDS	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000101331	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
CHTF18	TBC1D17	+/.	+/.	16:795868	19:49888368	intron	intron	translocation/5'-5'	0	0	0	5	3	low	.	.	.	.	.	ENSG00000127586	ENSG00000104946	.	.	downstream	downstream	mismatches(1)	.	.	.
OXNAD1	HOMER2	+/.	-/.	3:16298767	15:82971584	intron	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000103942	.	.	downstream	downstream	mismatches(2)	.	.	.
HYDIN2	AC091987.1	+/.	-/.	1:146551982	5:105215899	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000253584	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262586	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
LINC02506	SLC15A4	+/.	-/.	4:32012522	12:128816258	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251129	ENSG00000139370	.	.	upstream	downstream	mismatches(1)	.	.	.
UGT1A8	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000242366	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DHFR	DLG2	-/.	-/.	5:80650270	11:85484196	intron	intron	translocation	0	0	0	68	279	low	.	.	.	.	.	ENSG00000228716	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP2CA	LSM14B	-/.	+/.	5:134225645	20:62131771	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113575	ENSG00000149657	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683470	15:81683479	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FAT1(23081),AC108865.1(141166)	RNU4-83P(49968),RPS26P6(13943)	./.	./.	4:186749803	8:100881828	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021087.5	CRADD	+/+	+/-	5:230939	12:93679807	CDS	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000286001	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	ANPEP	./.	-/.	2:53114408	15:89814962	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000166825	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GAS8	ZFPM1	+/+	+/+	16:90019748	16:88505556	5'UTR	intron	duplication	0	0	0	4	0	low	.	.	|Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000141013	ENSG00000179588	.	.	downstream	upstream	mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	1:208413786	15:45462428	intergenic	intron	translocation	0	0	0	68	12	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
AL606753.2(143119),LINC01735(192778)	AC025580.2	./.	+/.	1:208413786	15:45462585	intergenic	intron	translocation	0	0	0	68	23	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
ENPP6	ELOCP27(51355),AP005203.1(264241)	-/.	./.	4:184122405	18:4510813	intron	intergenic	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	.	.	.	upstream	upstream	mismatches(2)	.	.	.
PPID	LINC01495	-/.	-/.	4:158723158	11:22480925	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171497	ENSG00000255323	.	.	upstream	upstream	mismatches(1)	.	.	.
AP4B1-AS1	DHFR	+/.	-/.	1:113888331	5:80651216	intron	intron	translocation	0	0	0	0	128	low	.	.	.	.	.	ENSG00000226167	ENSG00000228716	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
AC079612.2(94233),AC093802.2(9884)	5_8S_rRNA(2097),FP236383.3(121613)	./.	./.	2:239725072	21:8259030	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	FP236383.3	./.	+/.	3:95431526	21:8397435	intergenic	intron	translocation	0	0	0	45	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(12),mismatches(9)	.	.	.
GCNT1	5_8S_rRNA(1693),FP236383.3(122017)	+/.	./.	9:76571859	21:8258626	intron	intergenic	translocation	0	0	0	38	44	low	.	.	.	.	.	ENSG00000187210	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC4A10	GAPDHP36(89380),RALBP1P1(20619)	+/.	./.	2:161763874	3:180302488	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144290	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ABR	FP671120.4	-/.	+/.	17:1124172	21:8214781	intron	intron	translocation	0	0	0	8	5263	low	.	.	.	.	.	ENSG00000159842	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
TATDN2	GSE1	+/.	+/.	3:10249511	16:85260116	CDS	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000157014	ENSG00000131149	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC010746.2(61353),NPM1P46(5608)	LINC02235	./.	+/.	2:197374093	8:81842469	intergenic	intron	translocation	0	0	0	12	76	low	.	.	.	.	.	.	ENSG00000254689	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
FP671120.4	CR392039.1(944),CR392039.3(8122)	+/.	./.	21:8214789	21:8988374	intron	intergenic	inversion	0	0	0	5263	48	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AP001095.1(73966),PTPRM(31681)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	18:7535101	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RAMP3(65696),AC073968.2(16683)	5_8S_rRNA(1602),FP236383.3(122108)	./.	./.	7:45251998	21:8258535	intergenic	intergenic	translocation	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDH8(89412),RNU6-21P(61093)	CDH8(89462),RNU6-21P(61043)	./.	./.	16:62126447	16:62126497	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
MTRNR2L12(251),RPL18AP8(817)	AL020994.2(8721),AL049536.1(26476)	./.	./.	3:96618487	22:27387986	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBGCP5(2507),ELMO2P1(41015)	WDR13	./.	+/.	15:23042079	X:48597821	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101940	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP20DC	BICC1	-/.	+/.	3:58817013	10:58688003	intron	intron	translocation/5'-5'	0	0	0	0	87	low	.	.	.	.	.	ENSG00000163689	ENSG00000122870	.	.	upstream	downstream	homopolymer(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	CEMIP2(21729),ABHD17B(24033)	./.	./.	3:103984260	9:71838419	intergenic	intergenic	translocation	0	0	0	83	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
RNF43	AC091691.3(4145),AC091691.2(3107)	-/.	./.	17:58385558	18:71212511	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000108375	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MSANTD3-TMEFF1	FP236383.3	+/.	+/.	9:100456466	21:8397829	intron	intron	translocation	0	0	0	2	1126	low	.	.	.	.	.	ENSG00000251349	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02150	CT867976.1(150833),AC138776.1(197047)	-/.	./.	5:16393216	22:11630476	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000248150	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS7P4(20662),COX6B1P7(18671)	FP236383.3	./.	+/.	1:68263717	21:8397434	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
IP6K1(3646),CDHR4(544)	AP003390.1(4499),AP001994.1(77182)	./.	./.	3:49790188	11:119744122	intergenic	intergenic	translocation	0	0	0	14	3002	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
EFCAB14(21847),AL593856.1(1336)	SLCO1B1	./.	+/.	1:46740993	12:21146484	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000134538	.	.	upstream	downstream	mismatches(1)	.	.	.
BAG6	FP236383.3	-/.	+/.	6:31647292	21:8444134	intron	intron	translocation	0	0	0	5	19	low	.	.	.	.	.	ENSG00000204463	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01320	DLG2	+/.	-/.	2:33767498	11:85484197	intron	intron	translocation/5'-5'	0	0	0	72	279	low	.	.	.	.	.	ENSG00000228262	ENSG00000150672	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
LINC00692(18212),RPEP2(123709)	AC017000.1	./.	-/.	3:25891960	7:4133259	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000283991	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00692(18212),RPEP2(123709)	AP003400.1	./.	-/.	3:25891960	11:89589229	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000255429	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC084337.2	AL031600.2	+/.	-/.	11:6496217	16:1471975	intron	intron	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	ENSG00000261430	.	.	upstream	upstream	homopolymer(1)	.	.	.
NAGPA-AS1	FP236383.3	+/+	+/+	16:5011163	21:8442047	exon	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000267072	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
SLC22A15(28594),MAB21L3(13107)	AC005229.5	./.	-/.	1:116098648	7:148605538	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000287636	.	.	downstream	upstream	mismatches(1)	.	.	.
ENPP6	SPECC1	-/.	+/.	4:184122405	17:20094542	intron	intron	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	ENSG00000128487	.	.	upstream	upstream	mismatches(2)	.	.	.
FBXW7	A1CF	-/-	-/-	4:152411374	10:50848272	CDS	intron	translocation	0	0	0	0	34	low	.	.	|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),double_strand_RNA_binding_domain_from_DEAD_END_PROTEIN_1(100%)	.	.	ENSG00000109670	ENSG00000148584	.	.	upstream	downstream	duplicates(9),mismatches(1)	.	.	.
EIF1B-AS1	RPL24P9(223684),AC074035.1(449955)	-/.	./.	3:40253719	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000280739	.	.	.	upstream	downstream	mismatches(1)	.	.	.
P2RY1(38284),HMGN2P13(187555)	ABCA10	./.	-/.	3:152879723	17:69221022	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000154263	.	.	upstream	downstream	mismatches(1)	.	.	.
EPRS1	FP236383.3	-/.	+/.	1:219976244	21:8442659	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000136628	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	SLC39A11	-/.	-/.	5:80651216	17:72700398	intron	intron	translocation	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000133195	.	.	downstream	upstream	duplicates(6),mismatches(1)	.	.	.
AC008691.1	WIPI2(6935),SLC29A4(33594)	+/.	./.	5:159645741	7:5240775	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GCC2	MIR548G(65088),AC010683.1(16169)	+/.	./.	2:108492236	4:147409805	intron	intergenic	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135968	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM89A(801),AL109810.1(76776)	GLP2R	./.	+/.	1:231041055	17:9862139	intergenic	intron	translocation	0	0	0	6	28	low	.	.	.	.	.	.	ENSG00000065325	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GCLM	Z95115.2	-/.	+/.	1:93899685	22:26606612	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000023909	ENSG00000286326	.	.	downstream	upstream	mismatches(1)	.	.	.
WDR72	IL16	-/.	+/.	15:53648351	15:81193701	intron	intron	duplication/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000166415	ENSG00000172349	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	5_8S_rRNA(1687),FP236383.3(122023)	./.	./.	3:95431526	21:8258620	intergenic	intergenic	translocation	0	0	0	45	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(12),mismatches(9)	.	.	.
LINC01205	SLC5A11	+/.	+/.	3:109700822	16:24883973	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000228980	ENSG00000158865	.	.	upstream	downstream	mismatches(2)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683463	15:81683472	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
CHRNB4	FP236383.3	-/.	+/.	15:78632255	21:8433768	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000117971	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
HOXC12(2288),HOTAIR(1064)	AC109630.1	./.	+/.	12:53961244	15:39489485	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259269	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC22A2	AL163974.1(22793),LINC00523(45131)	-/.	./.	6:160207135	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000112499	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01381(6971),DNMT3A(11682)	FP236383.3	./.	+/.	2:25216173	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NBPF4(12452),AL359258.1(4663)	AL390038.1	./+	+/+	1:108256533	1:108421302	intergenic	exon	deletion/read-through	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000224698	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NAA15	CHTF18	+/.	+/.	4:139380261	16:795868	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000164134	ENSG00000127586	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC077690.1(10581),LMCD1-AS1(150200)	NUP214	./.	+/.	3:7801063	9:131197615	intergenic	CDS	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000126883	.	.	downstream	upstream	mismatches(1)	.	.	.
DELEC1	MT-RNR2	+/.	+/.	9:115141055	MT:2612	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000173077	ENSG00000210082	.	.	upstream	upstream	duplicates(2),uninteresting_contigs(2)	.	.	.
UBE2W	GDA	-/.	+/.	8:73820101	9:72149978	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000119125	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
AC108073.3	SLCO5A1	-/.	-/.	4:187943695	8:69690371	exon	intron	translocation/3'-3'	0	0	0	13	53	low	.	.	.	.	.	ENSG00000286641	ENSG00000137571	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
HPSE2	OR52K3P	-/.	+/.	10:98573575	11:4475677	intron	exon	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000172987	ENSG00000225101	.	.	downstream	upstream	mismatches(1)	.	.	.
FLG-AS1	ISCA1P6(7623),AC012451.1(53691)	+/.	./.	1:152381055	2:128526800	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000237975	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SGTB	LAMA5	-/.	-/.	5:65685055	20:62337137	intron	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000197860	ENSG00000130702	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR4300HG	IGHVIII-38-1(831),IGHV4-39(2581)	-/.	./.	11:82143180	14:106419130	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
TDO2	DLG2	+/.	-/.	4:155871604	11:85484188	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000151790	ENSG00000150672	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
DLG2	LINC02444	-/.	+/.	11:85484188	12:73182054	intron	intron	translocation/5'-5'	0	0	0	279	3	low	.	.	.	.	.	ENSG00000150672	ENSG00000258123	.	.	upstream	downstream	duplicates(30),mismatches(22)	.	.	.
GAPDHP75(532267),RNA5SP73(590)	GRIA2(140760),AC093817.2(61896)	./.	./.	1:189665559	4:157506835	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022384.1	FAT1(23083),AC108865.1(141164)	+/.	./.	3:10249513	4:186749805	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	.	.	.	upstream	upstream	duplicates(1),mismatches(3)	.	.	.
GNGT1	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	7:93890907	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000127928	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01381(6971),DNMT3A(11682)	FP671120.4	./.	+/.	2:25216173	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TTPA(22952),AC011978.1(27218)	FP236383.3	./.	+/.	8:63109005	21:8401256	intergenic	intron	translocation	0	0	0	19	15	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC01574(60298),UNC5A(6350)	PRKAR1B	./.	-/.	5:176804169	7:651313	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000188191	.	.	downstream	downstream	mismatches(1)	.	.	.
TPK1	SUPT5H	-/.	+/.	7:144580544	19:39458232	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000196511	ENSG00000196235	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02339(168911),RAC1P8(208293)	INTS2(10756),MED13(3833)	./.	./.	13:61596857	17:61938772	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079760.2	FP236383.3	+/.	+/.	7:91494892	21:8389581	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000243144	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TSPOAP1-AS1	RPL14P5(31331),CRLF2(146117)	+/.	./.	17:58385558	X:1041432	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	.	.	.	downstream	upstream	mismatches(1)	.	.	.
G6PC2	MT-RNR1	+/.	+/.	2:168903786	MT:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152254	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
AL591463.1(101809),LRRIQ3(8866)	FP671120.4	./.	+/.	1:74017149	21:8214396	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3850),GPN2(7826)	./.	./.	1:26868241	1:26868306	intergenic	intergenic	duplication/ITD	0	0	0	80	79	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FP671120.4	5_8S_rRNA(2111),FP236383.3(121599)	+/.	./.	21:8214788	21:8259044	intron	intergenic	duplication	0	0	0	5263	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.3(3894),FP671120.7(549)	FP236383.3	./.	+/.	21:8254043	21:8442053	intergenic	intron	inversion	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96617790	21:8393310	5'UTR	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SSPOP	BICC1	+/.	+/.	7:149787750	10:58688003	exon	intron	translocation	0	0	0	0	87	low	.	.	.	.	.	ENSG00000197558	ENSG00000122870	.	.	upstream	downstream	duplicates(2),homopolymer(3)	.	.	.
LINC02864	FP236383.3	-/.	+/.	18:73168244	21:8441655	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000263711	ENSG00000280441	.	.	upstream	upstream	duplicates(10),mismatches(5)	.	.	.
SDHAF3(6449),AC073900.1(12496)	FP671120.4	./.	+/.	7:97188212	21:8215397	intergenic	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC034228.3	CFAP58	-/.	+/.	5:131885425	10:104396370	intron	intron	translocation/3'-3'	0	0	0	58	558	low	.	.	.	.	.	ENSG00000281938	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
RNU1-154P(22784),AC239860.3(5321)	FP236383.3	./.	+/.	1:145454477	21:8442052	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	5:175967559	15:45462426	intron	intron	translocation/5'-5'	0	0	0	67	12	low	.	.	.	.	.	ENSG00000051596	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
DLG2	MACROD2	-/.	+/.	11:85484188	20:14179635	intron	intron	translocation	0	0	0	279	2	low	.	.	.	.	.	ENSG00000150672	ENSG00000172264	.	.	upstream	upstream	mismatches(3)	.	.	.
MICALL2	FP236383.3	-/-	+/+	7:1444968	21:8397828	CDS	intron	translocation	0	0	0	0	1126	low	.	.	Calponin_homology_(CH)_domain(100%),LIM_domain(100%)|	.	.	ENSG00000164877	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
HIP1(11220),CCL26(19351)	KIAA1217	./.	+/.	7:75750182	10:23941993	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000120549	.	.	upstream	upstream	mismatches(1)	.	.	.
SEC14L5	THUMPD1	+/.	-/.	16:4988032	16:20739152	intron	intron	deletion/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000103184	ENSG00000066654	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683461	15:81683470	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
TNFSF4(16603),AL645568.2(127755)	DACT2(25891),AL138918.1(29029)	./.	./.	1:173223934	6:168345668	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NPAS3	FRMD6	+/.	+/.	14:33490812	14:51587852	intron	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151322	ENSG00000139926	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009301.1(3953),GALNT14(9127)	SLCO5A1	./.	-/.	2:30901340	8:69690371	intergenic	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	.	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02864	FP236383.3	-/.	+/.	18:73168245	21:8397434	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000263711	ENSG00000280441	.	.	upstream	upstream	duplicates(18),mismatches(13)	.	.	.
AC103764.1(47896),RPL23AP56(49032)	AC008115.2	./.	+/.	8:134929795	12:12676727	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000257004	.	.	upstream	downstream	mismatches(1)	.	.	.
C1orf94	5_8S_rRNA(2091),FP236383.3(121619)	+/+	./+	1:34177327	21:8259024	5'UTR	intergenic	translocation	0	0	0	7	6	low	.	.	.	.	.	ENSG00000142698	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004687.2	SBNO2	-/.	-/.	17:58385558	19:1119477	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000285897	ENSG00000064932	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211818	21:8394739	intron	intron	deletion/read-through	0	0	0	0	154	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007405.1	AC064874.1	-/.	-/.	2:170768859	2:235775619	intron	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234350	ENSG00000222007	.	.	downstream	upstream	mismatches(1)	.	.	.
DLG2	FRMD6	-/.	+/.	11:83809290	14:51587852	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000139926	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP3K21(26106),RNU4-77P(37372)	FP236383.3	./.	+/.	1:233411254	21:8442145	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
DENND3(7632),SLC45A4(3726)	LINC02620	./.	-/.	8:141203440	10:104479808	intergenic	intron	translocation	0	0	0	2	2200	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	upstream	mismatches	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	FP236383.3	./.	+/.	3:95431525	21:8441654	intergenic	intron	translocation	0	0	0	45	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(21),mismatches(17)	.	.	.
FHIT	DHFR	-/.	-/.	3:60578626	5:80651215	intron	intron	translocation	0	0	0	0	128	low	.	.	.	.	.	ENSG00000189283	ENSG00000228716	.	.	upstream	downstream	duplicates(6),mismatches(1)	.	.	.
SH3TC2	FP236383.3	-/.	+/.	5:149025829	21:8400584	3'UTR	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000169247	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
HIVEP2	DDB2	-/.	+/.	6:142946389	11:47233105	intron	intron	translocation	0	0	0	63	341	low	.	.	.	.	.	ENSG00000010818	ENSG00000134574	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
FBXW7	AC012494.1	-/-	-/-	4:152411373	2:77723211	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109670	ENSG00000227088	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005264.4	ATP11C	+/.	-/.	18:12215254	X:139926292	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000267733	ENSG00000101974	.	.	downstream	downstream	mismatches(1)	.	.	.
STEAP2-AS1	MT-RNR2	-/.	+/.	7:90050657	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000227646	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CDK13	DHFR	+/+	-/-	7:39951169	5:80650927	CDS	intron	translocation	0	0	0	0	81	low	.	.	|Dihydrofolate_reductase(77%)	.	.	ENSG00000065883	ENSG00000228716	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RGS12	FAT1(23082),AC108865.1(141165)	+/+	./+	4:3386020	4:186749804	exon	intergenic	deletion	0	0	0	0	0	low	.	.	PDZ_domain(100%)|	.	.	ENSG00000159788	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HBB	CHD3	-/.	+/.	11:5225537	17:7885001	3'UTR	CDS	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000170004	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC021678.2	FP236383.3	-/.	+/.	8:28332986	21:8401909	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253690	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	FP671120.4	./.	+/.	3:95431525	21:8214396	intergenic	intron	translocation	0	0	0	45	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(21),mismatches(17)	.	.	.
AC016687.3	FP236383.3	-/.	+/.	4:34005923	21:8445488	intron	intron	translocation/3'-3'	0	0	0	10	6	low	.	.	.	.	.	ENSG00000250954	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SGMS1-AS1	FP236383.3	+/.	+/.	10:50624032	21:8397816	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000226200	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
HFM1	GLRX2(12805),CDC73(3064)	-/.	./.	1:91387407	1:193118919	intron	intergenic	deletion	0	0	0	6	3	low	.	.	.	.	.	ENSG00000162669	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ARID4B	H4-16	-/.	-/.	1:235327619	12:14769960	intron	exon	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000197837	.	.	upstream	downstream	mismatches(1)	.	.	.
CDH8	CDH4	-/.	+/.	16:61831043	20:61393342	intron	intron	translocation/3'-3'	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	ENSG00000179242	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF24	CNOT1	-/.	-/.	8:66961833	16:58543813	intron	CDS	translocation/3'-3'	0	0	0	1	2	low	.	.	.	.	.	ENSG00000261787	ENSG00000125107	.	.	downstream	downstream	mismatches	.	.	.
DUSP16	5_8S_rRNA(2091),FP236383.3(121619)	-/.	./.	12:12553672	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000111266	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC112242.1(11775),AC097375.2(1894)	FP671120.4	./.	+/.	4:151903038	21:8214783	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL133372.2	FP671120.4	-/.	+/.	14:30207313	21:8214798	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000248975	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SNX16	FP671120.4	-/.	+/.	8:81842488	21:8206534	intron	intron	translocation	0	0	0	75	9	low	.	.	.	.	.	ENSG00000104497	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF236	RASGRF2	+/+	+/+	18:76969034	5:81180472	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	C2H2-type_zinc_finger(100%),Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|RasGEF_domain(100%)	.	.	ENSG00000130856	ENSG00000113319	.	.	downstream	upstream	mismatches(1)	.	.	.
LMNB1	AL358177.1(126006),C1orf100(39070)	+/+	./+	5:126776742	1:244313565	5'UTR	intergenic	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000113368	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8209833	21:8397823	intron	intron	inversion/3'-3'	0	0	0	48	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AC099552.4(12095),AC099552.2(31191)	BNIP3P2(65636),YME1L1P1(74311)	./.	./.	7:155235946	22:15415679	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DIPK1A	SPTB	-/.	-/.	1:92862797	14:64825795	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000154511	ENSG00000070182	.	.	downstream	downstream	mismatches(1)	.	.	.
PKN2-AS1	SIAH1P1	-/.	+/.	1:88292066	X:35626738	intron	exon	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000237505	ENSG00000230227	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749078	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479811	10:104479824	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	duplicates(10),low_entropy(40)	.	.	.
AL358154.1	FP236383.3	-/.	+/.	10:93782093	21:8397821	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000280485	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262475	6:42262484	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TATDN2	AC092275.1	+/.	+/.	3:10249513	16:85260114	CDS	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000157014	ENSG00000287787	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
KIAA2012	FBXW5	+/.	-/.	2:202083776	9:136943086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000159069	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNU6-728P(25126),PLEKHA1(3777)	HOXC12(2288),HOTAIR(1064)	./.	./.	10:122370919	12:53961244	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TMC4(94),MBOAT7(68)	SPANXA2-OT1	./.	+/.	19:54173344	X:141542404	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000277215	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005833.1	PRKCA	+/.	+/.	12:4702203	17:66876179	intron	intergenic	translocation/5'-5'	0	0	0	19	0	low	.	.	.	.	.	ENSG00000255639	ENSG00000154229	.	.	downstream	downstream	mismatches	.	.	.
AC106795.1	AC025580.2	+/.	+/.	5:177876243	15:45462154	intron	intron	translocation/5'-5'	0	0	0	68	28	low	.	.	.	.	.	ENSG00000170089	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
JAK1	NOS1AP	-/.	+/.	1:64860341	1:162228984	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162434	ENSG00000198929	.	.	upstream	upstream	mismatches(1)	.	.	.
AC016687.3	PSCA(9242),LY6K(8144)	-/.	./.	4:34005923	8:142691967	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000250954	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	DOCK11	./.	+/.	3:95431526	X:118541248	intergenic	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	.	ENSG00000147251	.	.	downstream	upstream	mismatches(1)	.	.	.
RNF43	RPL14P5(31331),CRLF2(146117)	-/.	./.	17:58385558	X:1041432	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PDS5A	H2AZ1-DT	-/.	+/.	4:39875783	4:100061827	intron	intron	deletion/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	ENSG00000245322	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC024598.1	AC079772.1	+/+	+/-	10:62376871	4:33652318	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000285837	ENSG00000288321	.	.	downstream	downstream	mismatches(1)	.	.	.
AL138900.2(75586),AL732406.1(14686)	RNU6-1059P(140588),RNU6-34P(142945)	./.	./.	1:157386241	4:96009352	intergenic	intergenic	translocation	0	0	0	0	27	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC022384.1	AC103764.1(47897),RPL23AP56(49031)	+/.	./.	3:10249513	8:134929796	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PRRT2	AL162417.1	+/+	-/+	16:29813708	9:133148049	CDS	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167371	ENSG00000285245	.	.	downstream	upstream	mismatches(1)	.	.	.
PDS5A	FP671120.4	-/.	+/.	4:39875783	21:8216865	intron	intron	translocation/3'-3'	0	0	0	11	1	low	.	.	.	.	.	ENSG00000121892	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
TNPO2	PDZRN3	-/-	-/-	19:12706094	3:73449628	CDS	intron	translocation	0	0	0	0	0	low	.	.	HEAT-like_repeat(100%),Importin-beta_N-terminal_domain(100%)|PDZ_domain(65%)	.	.	ENSG00000105576	ENSG00000121440	.	.	upstream	downstream	mismatches(1)	.	.	.
AC078909.2(1317),Metazoa_SRP(105316)	AC078909.2(1332),Metazoa_SRP(105301)	./.	./.	15:37111301	15:37111316	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02123(10555),AC027343.1(3753)	PRDX3(3405),GRK5(25354)	./.	./.	5:7359226	10:119182217	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	DIP2C	./.	-/.	8:49417336	10:412339	intergenic	intron	translocation	0	0	0	30	0	low	.	.	.	.	.	.	ENSG00000151240	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4485),AP001994.1(77196)	+/.	./.	10:104396370	11:119744108	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
RGMB	TSPY12P(668),AC007274.2(295)	+/.	./.	5:98771438	Y:7690216	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
KIAA2012-AS1	LINC01608	-/.	-/.	2:202083776	8:110977288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000253877	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749058	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8206231	21:8442056	intron	intron	deletion/read-through	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(10),mismatches(6)	.	.	.
AL135926.1	MYHAS	-/.	+/.	1:169027434	17:10560410	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000285622	ENSG00000272975	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	FP236383.3	./.	+/.	2:240393940	21:8397829	intergenic	intron	translocation	0	0	0	357	5614	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
ZFR2	FP236383.3	-/.	+/.	19:3805241	21:8397828	3'UTR	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000105278	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GABBR2	CHRDL1(2862),PAK3(145604)	-/.	./.	9:98697848	X:110798681	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136928	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SNTG2	CORO2A	+/.	-/.	2:1349091	9:98192535	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172554	ENSG00000106789	.	.	upstream	upstream	mismatches(1)	.	.	.
KIRREL1	AC068286.2	+/+	-/-	1:158095881	2:14919275	3'UTR	intron	translocation	0	0	0	0	9	low	.	.	CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)|	.	.	ENSG00000183853	ENSG00000287291	.	.	downstream	downstream	mismatches(1)	.	.	.
CR2	RNA5SP455(81039),AC110014.1(62231)	+/.	./.	1:207454715	18:44152740	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117322	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SEMA5B(2029),PDIA5(36391)	SEMA5B(2038),PDIA5(36382)	./.	./.	3:123030634	3:123030643	intergenic	intergenic	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
LARS2	MUC5B	+/.	+/.	3:45493462	11:1236372	intron	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000011376	ENSG00000117983	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(1693),FP236383.3(122017)	FP236383.3	./.	+/.	21:8258626	21:8394740	intergenic	intron	inversion	0	0	0	44	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
IQCE	XKR6	+/.	-/.	7:2578700	8:11201251	intron	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000106012	ENSG00000171044	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC01287(16430),PAXBP1P1(19014)	TP53INP2	./.	+/.	7:153430415	20:34709798	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000078804	.	.	upstream	downstream	mismatches(1)	.	.	.
TATDN2	NRP1	+/.	-/.	3:10249513	10:33334709	CDS	5'UTR	translocation/3'-3'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000157014	ENSG00000099250	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
RN7SKP120(269663),AL353730.1(220843)	RN7SKP120(269708),AL353730.1(220798)	./.	./.	9:25358814	9:25358859	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(4)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749084	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
FP236383.4	LINC01897(19535),HMGN1P30(34825)	-/-	./+	21:8393596	18:57983969	exon	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000280614	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749084	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	duplicates(7),mismatches(1)	.	.	.
AL591122.1(12914),ZBTB40(49442)	FP236383.3	./.	+/.	1:22379396	21:8438949	intergenic	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CAMK1G	OR5D14(14701),OR5L1(166)	+/.	./.	1:209590483	11:55811201	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000008118	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SEMA3A	RPL11P5(15458),AC125616.1(18824)	-/.	./.	7:84007637	12:120610006	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075213	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	AP001823.1(3442),ELMOD1(746)	+/.	./.	10:104396370	11:107590345	intron	intergenic	translocation	0	0	0	558	1914	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
5_8S_rRNA(3348),FP236383.3(120362)	FP236383.3	./.	+/.	21:8260281	21:8394735	intergenic	intron	deletion/read-through	0	0	0	4	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC106886.2	FP236383.3	+/.	+/.	16:30749090	21:8396230	intron	intron	translocation/5'-5'	0	0	0	221	0	low	.	.	.	.	.	ENSG00000260899	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
BAIAP2L1(191),PPIAP82(52838)	FP236383.3	./.	+/.	7:98401281	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916412	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
AC108073.3	FP236383.3	-/.	+/.	4:187943696	21:8400584	exon	intron	translocation/3'-3'	0	0	0	13	7	low	.	.	.	.	.	ENSG00000286641	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1692),FP236383.3(122018)	AP001599.1	./.	+/.	21:8258625	21:26914103	intergenic	intron	duplication	0	0	0	44	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
CACNA1C	FP236383.3	+/.	+/.	12:2315052	21:8442659	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000151067	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785697	2:101785796	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	duplicates(12),low_entropy(11),merge_adjacent	.	.	.
TIPARP	TIPARP	+/.	+/.	3:156702022	3:156702065	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000163659	ENSG00000163659	.	.	upstream	downstream	low_entropy(1)	.	.	.
DPP10	FP671120.4	+/.	+/.	2:114672372	21:8211722	intron	intron	translocation/5'-5'	0	0	0	5	136	low	.	.	.	.	.	ENSG00000175497	ENSG00000278996	.	.	downstream	downstream	mismatches	.	.	.
U3(104497),GPC1(41723)	FP671120.4	./.	+/.	2:240393940	21:8214818	intergenic	intron	translocation	0	0	0	357	6035	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3431),ELMOD1(757)	FXNP1(22669),NRXN3(87426)	./.	./.	11:107590334	14:78082947	intergenic	intergenic	translocation	0	0	0	1909	336	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
SMURF1	AC087311.1(131559),SYT10(248925)	-/-	./-	7:99057521	12:33125313	CDS	intergenic	translocation	0	0	0	0	8	low	.	.	C2_domain(73%)|	.	.	ENSG00000198742	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749079	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001823.1(3429),ELMOD1(759)	AP001823.1(3444),ELMOD1(744)	./.	./.	11:107590332	11:107590347	intergenic	intergenic	duplication/ITD	0	0	0	1909	1408	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
CPE	XRCC6P2(65223),MAMLD1(63303)	+/.	./.	4:165367056	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109472	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC004687.2	FP671120.3(1492),FP671120.7(2951)	-/.	./.	17:58385559	21:8251641	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	.	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
DCHS2	AC008691.1	-/.	+/.	4:154351661	5:159645742	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000197410	ENSG00000249738	.	.	downstream	upstream	mismatches(1)	.	.	.
LMNA	SAP30BP	+/+	+/-	1:156139608	17:75667590	3'UTR	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	Intermediate_filament_protein(100%),Lamin_Tail_Domain(100%)|	.	.	ENSG00000160789	ENSG00000161526	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL29(29556),AC115284.3(21312)	MLX	./.	+/.	3:52025451	17:42567374	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000108788	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ZNF236	AC026433.1(26592),RPL19P11(283269)	+/+	./+	18:76969034	5:30770296	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	C2H2-type_zinc_finger(100%),Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000130856	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2097),FP236383.3(121613)	+/.	./.	21:8214800	21:8259030	intron	intergenic	duplication	0	0	0	5263	5782	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AC022384.1	AC092275.1	+/.	+/.	3:10249513	16:85260114	CDS	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000272410	ENSG00000287787	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
RGN	RGN	+/.	+/.	X:47086735	X:47086750	intron	intron	duplication/ITD	0	0	0	40	39	low	.	.	.	.	.	ENSG00000130988	ENSG00000130988	.	.	upstream	downstream	duplicates(25),low_entropy(9)	.	.	.
TATDN2	FP236383.3	+/.	+/.	3:10249514	21:8397830	CDS	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000157014	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
AC104123.1	SLC6A13	+/.	-/.	5:96361270	12:235015	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	ENSG00000010379	.	.	upstream	downstream	mismatches(1)	.	.	.
CSMD2	5_8S_rRNA(2096),FP236383.3(121614)	-/.	./.	1:33894234	21:8259029	intron	intergenic	translocation	0	0	0	2	6	low	.	.	.	.	.	ENSG00000121904	.	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
PTPRN2	AL954722.1(21042)	-/.	./.	7:158244937	X:232701	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155093	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023632.3(700),AC023632.4(3452)	AL513321.1(21925),AL592466.1(602)	./.	./.	8:94590959	10:65270717	intergenic	intergenic	translocation	0	0	0	22	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IQCA1L	FP236383.3	-/.	+/.	7:151202460	21:8444816	intron	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000278685	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
IFNGR1(270495),OLIG3(2255)	LTO1	./.	-/.	6:137489944	11:69656886	intergenic	exon	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000149716	.	.	downstream	downstream	mismatches(1)	.	.	.
IMPDH1(11852),AC010655.1(11318)	ITIH5	./.	-/.	7:128422104	10:7603995	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000123243	.	.	upstream	upstream	homopolymer(1)	.	.	.
U3(104497),GPC1(41723)	NOS1	./.	-/.	2:240393940	12:117237555	intergenic	intron	translocation	0	0	0	357	1	low	.	.	.	.	.	.	ENSG00000089250	.	.	upstream	downstream	mismatches(1)	.	.	.
AC087521.3(3200),ACCSL(43624)	LRCH1	./.	+/.	11:44004357	13:46639681	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000136141	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02144(17110),AC020930.1(17229)	C11orf53	./.	+/.	5:87750379	11:111249043	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150750	.	.	upstream	upstream	mismatches(1)	.	.	.
ABCC1	FP671120.4	+/.	+/.	16:16038749	21:8214790	intron	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000103222	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC239798.1(11468),AC239798.2(8792)	CADM2	./.	+/.	1:143837305	3:85836872	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000175161	.	.	upstream	upstream	mismatches(1)	.	.	.
HES4	DHFR	-/-	-/-	1:999810	5:80650927	CDS	intron	translocation	0	0	0	0	81	low	.	.	Helix-loop-helix_DNA-binding_domain(3%)|Dihydrofolate_reductase(77%)	.	.	ENSG00000188290	ENSG00000228716	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214800	21:8442064	intron	intron	duplication	0	0	0	5263	6003	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(4),homopolymer(4)	.	.	.
AL139260.1	MRPL13	+/.	-/.	1:38895536	8:120418520	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228436	ENSG00000172172	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CARD6(43663),C7(5659)	XRCC6P2(65222),MAMLD1(63304)	./.	./.	5:40903838	X:150298118	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
OR5D14(14699),OR5L1(168)	NGRN	./.	+/.	11:55811199	15:90270299	intergenic	intron	translocation	0	0	0	9	14	low	.	.	.	.	.	.	ENSG00000182768	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ATP5ME	DHFR	-/.	-/.	4:673239	5:80651216	intron	intron	translocation/3'-3'	0	0	0	0	128	low	.	.	.	.	.	ENSG00000169020	ENSG00000228716	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
HYDIN2	OXR1	+/.	+/.	1:146551982	8:106534226	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000164830	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CFAP58	AP001823.1(3432),ELMOD1(756)	+/.	./.	10:104396370	11:107590335	intron	intergenic	translocation	0	0	0	558	1909	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
AL606753.2(143093),LINC01735(192804)	AL606753.2(143119),LINC01735(192778)	./.	./.	1:208413760	1:208413786	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(66),low_entropy(2)	.	.	.
KCNMB2-AS1	KCNMB2-AS1	-/.	-/.	3:178655093	3:178655110	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000237978	ENSG00000237978	.	.	upstream	downstream	low_entropy(1)	.	.	.
NRP1	CHRNB4	-/.	-/.	10:33334709	15:78672957	5'UTR	intron	translocation/3'-3'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000099250	ENSG00000117971	.	.	downstream	downstream	mismatches(1)	.	.	.
RUFY4(18120),CXCR2(16588)	ARHGAP31	./.	+/.	2:218108701	3:119344053	intergenic	intron	translocation	0	0	0	193	1	low	.	.	.	.	.	.	ENSG00000031081	.	.	downstream	downstream	mismatches(1)	.	.	.
AL161613.1(257),SNORD27(13233)	AC009070.1	./.	-/.	13:21126653	16:80887218	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000286221	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OR2AQ1P(889),OR10AA1P(11297)	C10orf90	./.	-/.	1:158797102	10:126566286	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000154493	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CCDC3	KRT8P27(3759),GRPEL2P2(69546)	-/-	./+	10:12896736	X:64628332	3'UTR	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000151468	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DHFR	FP671120.4	-/.	+/.	5:80650927	21:8217335	intron	intron	translocation/3'-3'	0	0	0	81	4	low	.	.	.	.	.	ENSG00000228716	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC026202.1(36559),AC087857.1(669522)	FP236383.3	./.	+/.	3:5293320	21:8446140	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RHOBTB1	FP236383.3	-/.	+/.	10:60901773	21:8441653	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000072422	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
SEMA3D(128948),DYNLL1P7(65315)	AC005229.5	./.	-/.	7:85315803	7:148605538	intergenic	intron	inversion	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000287636	.	.	upstream	upstream	mismatches(1)	.	.	.
MIR3649(9042),ADIPOR2(19152)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	12:1669422	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
EBF2(344),RNA5SP258(91123)	FP671120.4	./.	+/.	8:26045757	21:8214785	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(3),mismatches(3)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	UBE2Q2L	./.	+/.	5:175198325	15:84186376	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000259511	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
MYRIP	RPL24P9(223684),AC074035.1(449955)	+/.	./.	3:40253719	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000170011	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLIT3	RNA5SP427(5140),AC007342.2(19308)	-/.	./.	5:169074016	16:53342711	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184347	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275721	13:49275783	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC079793.1	NPAS3	-/.	+/.	2:143307232	14:33799874	intron	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	ENSG00000228655	ENSG00000151322	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
EMP2	EMP2	-/.	-/.	16:10562337	16:10562352	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000213853	ENSG00000213853	.	.	upstream	downstream	duplicates(4),low_entropy(3)	.	.	.
SLC39A11	FP671120.4	-/.	+/.	17:72884574	21:8217546	intron	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000133195	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ANKRD44	AC124852.1(1655),Y_RNA(63129)	-/.	./.	2:197346325	5:2121581	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000065413	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC106886.2	FP671120.4	+/.	+/.	16:30749090	21:8213195	intron	intron	translocation/5'-5'	0	0	0	221	0	low	.	.	.	.	.	ENSG00000260899	ENSG00000278996	.	.	downstream	downstream	mismatches(1)	.	.	.
DOCK4	DLG2	-/.	-/.	7:111818567	11:84052131	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000128512	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM86B3P(53798),PRAG1(19073)	BPY2B	./.	+/.	8:8298663	Y:24625532	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000183795	.	.	upstream	upstream	mismatches(1)	.	.	.
MYOM3	AC007040.2	-/.	-/.	1:24060637	2:70994857	intron	5'UTR	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000142661	ENSG00000258881	.	.	downstream	downstream	mismatches(1)	.	.	.
SEC14L5	ACSM3	+/.	+/.	16:4988032	16:20739152	intron	intron	deletion	0	0	0	18	0	low	.	.	.	.	.	ENSG00000103184	ENSG00000005187	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
RAB3IP	FP236383.3	+/.	+/.	12:69781318	21:8442054	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000127328	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SNAP91	SNAP91	-/.	-/.	6:83556322	6:83556396	intron	intron	duplication/ITD	0	0	0	8	7	low	.	.	.	.	.	ENSG00000065609	ENSG00000065609	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC079612.1(1174),AC079612.2(38430)	FP236383.3	./.	+/.	2:239587268	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023141.7(3155228),AC128676.1(1283087)	AC091182.1(10752),AC091182.2(62696)	./.	./.	7:60992274	8:37342743	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU7-51P(667040),RNU6ATAC28P(34704)	RNU7-51P(667055),RNU6ATAC28P(34689)	./.	./.	14:83715680	14:83715695	intergenic	intergenic	duplication/ITD	0	0	0	33	33	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(25),low_entropy(8)	.	.	.
PTPRF	SHISA6	+/.	+/.	1:43584927	17:11337251	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000142949	ENSG00000188803	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL512634.1(10298),CHCHD2P9(182692)	FP671120.4	./.	+/.	9:79208612	21:8214801	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
H4-16	MIR1-1HG	-/.	+/.	12:14769962	20:62555962	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197837	ENSG00000174407	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC52A1	FP236383.3	-/.	+/.	17:5035640	21:8442047	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000132517	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
JAKMIP3	AL049779.1	+/.	-/.	10:132169526	14:67675020	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188385	ENSG00000258466	.	.	upstream	downstream	mismatches(1)	.	.	.
ZFR2	FP236383.3	-/.	+/.	19:3805241	21:8442058	3'UTR	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000105278	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	LINC01060	./.	+/.	3:103984260	4:188533877	intergenic	intron	translocation	0	0	0	83	0	low	.	.	.	.	.	.	ENSG00000249378	.	.	upstream	downstream	duplicates(9),mismatches(2)	.	.	.
PTBP1	FP236383.3	+/.	+/.	19:803135	21:8397815	intron	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000011304	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
DSCAM	MT-RNR2	-/.	+/.	21:40304235	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000171587	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LNCDAT	AL390334.1(278),BNIP3P1(418826)	+/.	./.	6:166170548	14:27845564	exon	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000288638	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RBFOX1	AC020916.1	+/.	-/.	16:6222319	19:13829913	intron	exon	translocation/3'-3'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000078328	ENSG00000267519	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
LINC01121	RFPL4AP7(64492),AC090155.2(79427)	-/.	./.	2:45292452	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000205054	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PDS5A	GAS2L1	-/.	+/.	4:39875783	22:29312407	intron	CDS	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	ENSG00000185340	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CBWD1	RBM38(6607),AL109955.1(26802)	-/.	./.	9:179090	20:57415940	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172785	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC20A1(49540),NT5DC4(8121)	ATG5	./.	-/.	2:112713365	6:106315012	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000057663	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	SLIT1	./.	-/.	2:218108703	10:97179807	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000187122	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CWC22(210065),AC012669.1(255775)	SLCO5A1	./.	-/.	2:180217362	8:69690371	intergenic	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	.	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
AC084337.2	ATP1B4	+/.	+/.	11:6496218	X:120373894	intron	intron	translocation/3'-3'	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	ENSG00000101892	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479913	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
CDCP1	RPL6P21(23501),DGKB(50168)	-/.	./.	3:45105266	7:14094881	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163814	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008268.1(53436),GPAT2P1(67491)	FP236383.3	./.	+/.	2:95722163	21:8442065	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749069	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CSF1R	ANKRD34C-AS1	-/.	-/.	5:150101514	15:79162041	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000182578	ENSG00000259234	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DHFR	MTRNR2L5	-/.	+/.	5:80650268	10:55599444	intron	5'UTR	translocation/3'-3'	0	0	0	68	8	low	.	.	.	.	.	ENSG00000228716	ENSG00000249860	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1(23082),AC108865.1(141165)	PPP2CA	./.	-/.	4:186749804	5:134225646	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000113575	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479893	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
EHD3(9876),AL121657.1(11435)	ARID4A	./.	+/.	2:31279327	14:58298977	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000032219	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL161935.2(50922),MACORIS(13563)	AL163974.1(22793),LINC00523(45131)	./.	./.	10:31679521	14:100612119	intergenic	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC128676.1(303218),RNU6-417P(432567)	C12orf65	./.	+/.	7:62578896	12:123233994	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000130921	.	.	downstream	downstream	homopolymer(1)	.	.	.
TBXAS1	KRT18P53(61506),SHOX(17486)	+/.	./.	7:140006800	X:606858	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000059377	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RNF38	ZIC5	-/.	-/.	9:36347125	13:99971192	intron	CDS	translocation	0	0	0	1	12	low	.	.	.	.	.	ENSG00000137075	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
EFNA5(410),AC024587.2(28045)	AC010319.2	./.	-/.	5:107671347	19:17456613	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000269035	.	.	upstream	downstream	mismatches(1)	.	.	.
GEMIN8(106776),UBE2E4P(107713)	GEMIN8(106813),UBE2E4P(107676)	./.	./.	X:14136669	X:14136706	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RALGDS	AC138466.3(11858),LINC02361(4834)	-/.	./.	9:133148049	12:132181901	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160271	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU6-1059P(140592),RNU6-34P(142941)	NTN1	./.	+/.	4:96009356	17:9230463	intergenic	intron	translocation	0	0	0	27	0	low	.	.	.	.	.	.	ENSG00000065320	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
STIM2	AC091182.1(10752),AC091182.2(62696)	+/.	./.	4:26861248	8:37342743	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109689	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PURPL(424057),AC093300.1(292308)	GNAI1	./.	+/.	5:27921051	7:79952950	intergenic	intron	translocation	0	0	0	1	3	low	.	.	.	.	.	.	ENSG00000127955	.	.	downstream	upstream	mismatches(1)	.	.	.
FNDC3A	PEPD	+/.	-/.	13:49110717	19:33426974	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000102531	ENSG00000124299	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AC025366.1(57830),AP005357.1(76639)	./.	./.	2:240393940	8:110690224	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(11),mismatches(13)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021208	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	low_entropy(1)	.	.	.
RAMP3(65703),AC073968.2(16676)	MT-RNR2	./.	+/.	7:45252005	MT:2609	intergenic	exon	translocation	0	0	0	71	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC084337.2	AC009035.1(259595),C16orf82(77986)	+/.	./.	11:6496218	16:26988721	intron	intergenic	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AL355836.3	CEP76	-/.	-/.	14:101193603	18:12698096	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000288245	ENSG00000101624	.	.	downstream	downstream	mismatches(2)	.	.	.
AC026782.1(30371),AC026782.2(10095)	AC026782.1(30384),AC026782.2(10082)	./.	./.	5:82576681	5:82576694	intergenic	intergenic	duplication/ITD	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RNU6-1059P(140592),RNU6-34P(142941)	AUTS2	./.	+/.	4:96009356	7:69895558	intergenic	intron	translocation	0	0	0	27	0	low	.	.	.	.	.	.	ENSG00000158321	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
FBXW5	TTTY2B	-/.	-/.	9:136943086	Y:6414447	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	ENSG00000212856	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NPSR1-AS1	AL353660.1	-/.	+/.	7:34667447	13:74357986	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197085	ENSG00000286330	.	.	downstream	upstream	mismatches(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	MIR212(624),HIC1(3150)	./.	./.	5:23949377	17:2051004	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
RNU6-1059P(140592),RNU6-34P(142941)	AC138466.3(11858),LINC02361(4834)	./.	./.	4:96009356	12:132181901	intergenic	intergenic	translocation	0	0	0	27	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC016721.1(218341),AC104408.1(528586)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	2:116158632	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
EBF2(345),RNA5SP258(91122)	FP236383.3	./.	+/.	8:26045758	21:8397818	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL162726.3(128523),RASEF(70873)	LINC00189	./.	+/.	9:82908717	21:29263475	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000215533	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479887	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396496	8:22396594	intron	intron	duplication/ITD	0	0	0	31	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
RPL21P18(19872),RNA5SP362(8635)	RPL21P18(19965),RNA5SP362(8542)	./.	./.	12:66057586	12:66057679	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PROM1(9726),AC108063.2(20129)	PROM1(9779),AC108063.2(20076)	./.	./.	4:16094104	4:16094157	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
THEMIS	LINC00838(1824),RPL23P11(89787)	-/.	./.	6:127735531	10:33774526	intron	intergenic	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23079),AC108865.1(141168)	DLG2	./.	-/.	4:186749801	11:85484164	intergenic	intron	translocation	0	0	0	0	558	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262485	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262581	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
FH(8961),KMO(3418)	FH(9020),KMO(3359)	./.	./.	1:241528716	1:241528775	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
LINC01060	TFB1M	+/.	-/.	4:188533877	6:155280046	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	ENSG00000029639	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	DMBT1	./.	+/.	1:26868241	10:122634480	intergenic	intron	translocation	0	0	0	80	8	low	.	.	.	.	.	.	ENSG00000187908	.	.	upstream	downstream	low_entropy	.	.	.
AL355338.1	AC109630.1	-/.	+/.	13:99977702	15:39489485	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288060	ENSG00000259269	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX16	LINC02620	-/.	-/.	8:81842436	10:104479908	intron	intron	translocation	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000104497	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
LINC01495	FP671120.7(732),5_8S_rRNA(535)	-/.	./.	11:22480925	21:8256246	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255323	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ST13P7(72606),EXOC4(9953)	ST13P7(72617),EXOC4(9942)	./.	./.	7:133243120	7:133243131	intergenic	intergenic	duplication/ITD	0	0	0	24	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AL392086.2	FP671120.4	+/.	+/.	10:6788934	21:8214689	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000285988	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AAMDC	RN7SL547P(135273),AL031679.1(62674)	+/.	./.	11:77886437	20:7769124	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000087884	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE4B	LINC02720(72431),AP003398.1(122060)	+/.	./.	1:10159221	11:80835257	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130939	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	3:64736204	3:64736268	intron	intron	duplication/ITD	0	0	0	57	57	low	.	.	.	.	.	ENSG00000241684	ENSG00000241684	.	.	upstream	downstream	duplicates(19),low_entropy(8)	.	.	.
SGMS1	FP236383.3	-/.	+/.	10:50624032	21:8397816	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000198964	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729367	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(4)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683460	15:81683469	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
UBE2W	PPP2R3B	-/.	-/.	8:73820102	X:370878	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000167393	.	.	upstream	downstream	mismatches(1)	.	.	.
AASS	FP236383.3	-/.	+/.	7:122096894	21:8389581	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000008311	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NAV1	IPO9-AS1	+/.	-/.	1:201702678	1:201702687	intron	intron	duplication/3'-3'	0	0	0	6	6	low	.	.	.	.	.	ENSG00000134369	ENSG00000231871	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
LINC02261(3855),IGBP1P5(299065)	FP236383.3	./.	+/.	4:27286080	21:8400584	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683460	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
ITGA2B	AC121334.1(19775),AC121334.2(52461)	-/-	./-	17:44384408	12:39487120	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000005961	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC011747.1(4440),ID2-AS1(39254)	DHFR	./.	-/.	2:8627382	5:80650927	intergenic	intron	translocation	0	0	0	0	81	low	.	.	.	.	.	.	ENSG00000228716	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ACTL10	RN7SKP194(124071),SKP2P1(85801)	+/.	./.	20:33667508	X:96534853	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000288649	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CSF1R	GNL1	-/.	-/.	5:150101514	6:30556386	intron	5'UTR	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000182578	ENSG00000204590	.	.	upstream	downstream	duplicates(3),mismatches(2)	.	.	.
MFSD1	AC069288.1	+/.	-/.	3:158750097	7:1817390	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000118855	ENSG00000286192	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02419(47606),AC026336.4(1634)	LINC02864	./.	-/.	12:130120291	18:73168243	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LUC7L3	FP236383.3	+/.	+/.	17:50719772	21:8441947	CDS	intron	translocation/3'-3'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000108848	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001189.4	KCNG2	+/.	+/.	11:76689335	18:79868056	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000254975	ENSG00000178342	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPL28	DYRK1A	+/+	+/+	19:55386172	21:37366265	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Protein_kinase_domain(100%)	.	.	ENSG00000108107	ENSG00000157540	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683460	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
SNX16	AP003390.1(4493),AP001994.1(77188)	-/.	./.	8:81842439	11:119744116	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
CHL1	FP671120.4	+/.	+/.	3:323470	21:8214396	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000134121	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SFN(3788),GPN2(7888)	CDKL5	./.	+/.	1:26868244	X:18626728	intergenic	intron	translocation	0	0	0	80	101	low	.	.	.	.	.	.	ENSG00000008086	.	.	upstream	downstream	low_entropy	.	.	.
A1CF	CDH11	-/.	-/.	10:50848274	16:65048283	intron	intron	translocation	0	0	0	34	0	low	.	.	.	.	.	ENSG00000148584	ENSG00000140937	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007513.1	MT-RNR1	-/.	+/.	12:96462680	MT:950	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000258272	ENSG00000211459	.	.	downstream	upstream	duplicates(2),uninteresting_contigs(2)	.	.	.
KRT18P28(12711),RNU6-41P(9096)	MBOAT2	./.	-/.	1:182973116	2:8859780	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000143797	.	.	upstream	downstream	mismatches(1)	.	.	.
SFN(3791),GPN2(7885)	SFN(3856),GPN2(7820)	./.	./.	1:26868247	1:26868312	intergenic	intergenic	duplication/ITD	0	0	0	80	79	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC007391.3	FARS2	+/.	+/.	2:37473961	6:5782068	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000287316	ENSG00000145982	.	.	upstream	downstream	mismatches(1)	.	.	.
DPH6-DT	FP236383.3	+/.	+/.	15:35727914	21:8442064	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000248079	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
RNA5SP173(55855),AC017087.1(223201)	FP236383.3	./.	+/.	4:178462685	21:8397833	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
TACR3(76721),AC004047.1(75184)	TACR3(76736),AC004047.1(75169)	./.	./.	4:103796706	4:103796721	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL023882.1	RTL8B	+/.	-/.	16:1045659	X:135022552	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287855	ENSG00000212747	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
OTX2P2(39023),PABPC1P2(70370)	DHFR	./.	-/.	2:146517136	5:80650944	intergenic	intron	translocation	0	0	0	0	30	low	.	.	.	.	.	.	ENSG00000228716	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
VAV2	LINC02126	-/.	-/.	9:133801530	16:65150302	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000160293	ENSG00000259847	.	.	downstream	upstream	mismatches(1)	.	.	.
CES5A(24340),AC040168.1(3638)	FP671120.3(3966),FP671120.7(477)	./.	./.	16:55980371	21:8254115	intergenic	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396538	8:22396553	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(6),merge_adjacent	.	.	.
AC108073.3	FP236383.3	-/.	+/.	4:187943697	21:8444816	exon	intron	translocation/3'-3'	0	0	0	13	62	low	.	.	.	.	.	ENSG00000286641	ENSG00000280441	.	.	downstream	upstream	duplicates(5),mismatches(4)	.	.	.
TET3	AC092170.1(239686),AC064856.1(115139)	+/.	./.	2:74002355	2:117421248	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187605	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872805	16:30749088	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	Y_RNA(5794),MAP7D2(15760)	+/.	./.	21:8216871	X:19990953	intron	intergenic	translocation	0	0	0	1	18	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL512634.1(10299),CHCHD2P9(182691)	L3MBTL4	./.	-/.	9:79208613	18:5979009	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000154655	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC106886.2	AC007785.1	+/.	+/.	16:30749091	19:46177264	intron	intron	translocation/5'-5'	0	0	0	221	0	low	.	.	.	.	.	ENSG00000260899	ENSG00000267922	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749087	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
RPS27AP16(328691),AC092125.2(253578)	FP236383.3	./.	+/.	16:61384655	21:8444812	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TMPO-AS1	5_8S_rRNA(2804),FP236383.3(120906)	-/.	./.	12:98516166	21:8259737	exon	intergenic	translocation	0	0	0	9	4	low	.	.	.	.	.	ENSG00000257167	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	MIR4300HG	+/.	-/.	10:104396370	11:82143175	intron	intron	translocation/3'-3'	0	0	0	558	1095	low	.	.	.	.	.	ENSG00000120051	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
MTURN	AC073332.1	+/+	-/-	7:30135056	7:17102798	5'UTR	intron	inversion	0	0	0	2	0	low	.	.	.	.	.	ENSG00000180354	ENSG00000237773	.	.	downstream	downstream	mismatches(1)	.	.	.
AC090502.3	AC009093.11	+/.	+/.	12:74170989	16:28391222	exon	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000258320	ENSG00000288630	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	21:8214895	21:8259012	intron	intergenic	deletion/read-through	0	0	0	63	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL008626.1(48216),RPS29P4(44015)	AC006499.8(7832),RAF1P1(8859)	./.	./.	1:175253065	4:10246067	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLCO1B1	FP236383.3	+/.	+/.	12:21146487	21:8445488	intron	intron	translocation	0	0	0	7	6	low	.	.	.	.	.	ENSG00000134538	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139383.1	5_8S_rRNA(1685),FP236383.3(122025)	-/.	./.	13:33517096	21:8258618	intron	intergenic	translocation	0	0	0	2	543	low	.	.	.	.	.	ENSG00000230490	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
NSMCE2	SLC5A11	+/.	+/.	8:125239715	16:24883973	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000156831	ENSG00000158865	.	.	upstream	downstream	mismatches(1)	.	.	.
AC018467.1(70379),AC012506.1(61229)	MYRFL	./.	+/.	2:23269435	12:69884018	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000166268	.	.	downstream	downstream	mismatches(1)	.	.	.
AL627316.1	LINC02620	-/.	-/.	1:90392879	10:104479909	intron	intron	translocation/3'-3'	0	0	0	311	1761	low	.	.	.	.	.	ENSG00000287372	ENSG00000225768	.	.	downstream	downstream	low_entropy	.	.	.
RGMB-AS1	HMGA2	-/.	+/.	5:98771438	12:65825652	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	ENSG00000149948	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
JAK1	FP671120.4	-/.	+/.	1:64848252	21:8214794	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000162434	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM86B3P(53799),PRAG1(19072)	STARP1(223670),HNRNPA3P5(253309)	./.	./.	8:8298664	13:65534623	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BNC2	BNC2	-/-	-/-	9:16412702	9:16412760	3'UTR	3'UTR	duplication/ITD	0	0	0	22	22	low	.	.	Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000173068	ENSG00000173068	.	.	upstream	downstream	duplicates(1)	.	.	.
AC021087.5	FP671120.4	+/.	+/.	5:282264	21:8214783	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000286001	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
DHFR	FP671120.4	-/.	+/.	5:80650927	21:8214405	intron	intron	translocation/3'-3'	0	0	0	81	8	low	.	.	.	.	.	ENSG00000228716	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AC090017.1(127143),DUX4L52(239987)	FP671120.4	./.	+/.	12:61360080	21:8214800	intergenic	intron	translocation	0	0	0	1	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
GPC3	GPC3	-/.	-/.	X:133661556	X:133661629	intron	intron	duplication/ITD	0	0	0	140	143	low	.	.	.	.	.	ENSG00000147257	ENSG00000147257	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MRC2	AC022384.1	+/+	+/+	17:62689980	3:10249513	CDS	CDS	translocation	0	0	0	0	0	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	ENSG00000272410	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023632.3(701),AC023632.4(3451)	ERN2	./.	-/.	8:94590960	16:23702061	intergenic	intron	translocation	0	0	0	22	8	low	.	.	.	.	.	.	ENSG00000134398	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
HLA-DRB5(13016),RNU1-61P(6637)	PHKG2	./.	+/.	6:32543303	16:30749091	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000156873	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	BICC1	./.	+/.	2:128443843	10:58688001	intergenic	intron	translocation	0	0	0	7	87	low	.	.	.	.	.	.	ENSG00000122870	.	.	downstream	downstream	duplicates(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	FRMD4A	./.	-/.	4:36965705	10:14238465	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000151474	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
H3C10	UBE2W	+/.	-/.	6:27810927	8:73820102	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	ENSG00000104343	.	.	upstream	upstream	duplicates(5)	.	.	.
BAG6	FP236383.3	-/.	+/.	6:31647292	21:8442045	intron	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	ENSG00000204463	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC128709.3(26250),LINC02012(11907)	TNFAIP3	./.	+/.	3:197493355	6:137873617	intergenic	intron	translocation	0	0	0	4	10	low	.	.	.	.	.	.	ENSG00000118503	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
ETNK2	FP236383.3	-/-	+/+	1:204151711	21:8397829	CDS	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000143845	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PRKAR1B	AL445072.1(7939),DCAF12L2(39998)	-/.	./.	7:651313	X:126123501	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000188191	.	.	.	downstream	downstream	mismatches(1)	.	.	.
THEMIS	ISM1	-/.	+/.	6:127729140	20:13268405	intron	intron	translocation/5'-5'	0	0	0	3	2	low	.	.	.	.	.	ENSG00000172673	ENSG00000101230	.	.	upstream	downstream	low_entropy	.	.	.
AC068473.3	FP236383.3	+/.	+/.	18:79577928	21:8398540	exon	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000267287	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
INTS4	RPS27AP16(328691),AC092125.2(253578)	-/.	./.	11:77886442	16:61384655	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000149262	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01166	5_8S_rRNA(2078),FP236383.3(121632)	-/.	./.	10:132962352	21:8259011	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000232903	.	.	.	downstream	upstream	mismatches	.	.	.
TECPR1	ADARB2	-/.	-/.	7:98229025	10:1560497	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000205356	ENSG00000185736	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HFM1	LINC00351(70062),AL356413.1(79305)	-/.	./.	1:91387408	13:85614632	intron	intergenic	translocation	0	0	0	6	5	low	.	.	.	.	.	ENSG00000162669	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC01788	AC106886.2	+/.	+/.	1:70753501	16:30749091	intron	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	ENSG00000229051	ENSG00000260899	.	.	upstream	downstream	mismatches(1)	.	.	.
RALGAPA1	XRCC6P2(65223),MAMLD1(63303)	-/.	./.	14:35603297	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174373	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093627.22	ERN2	-/.	-/.	7:117610	16:23702060	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000134398	.	.	upstream	downstream	mismatches(2)	.	.	.
L3MBTL3	AL158090.1(75595),GAPDHP53(51710)	+/.	./.	6:130019862	20:24393681	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000198945	.	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(1621),LRP10(2202)	HDAC6	./.	+/.	14:22869538	X:48801483	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000094631	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DLGAP2	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	8:1089848	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000198010	.	.	.	upstream	upstream	mismatches(2)	.	.	.
LINC01788	PHKG2	+/.	+/.	1:70753501	16:30749091	intron	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	ENSG00000229051	ENSG00000156873	.	.	upstream	downstream	mismatches(1)	.	.	.
AC079760.2	AP005059.1	+/.	+/.	7:91493507	18:5568113	exon	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000243144	ENSG00000264000	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	FXNP1(22701),NRXN3(87394)	-/.	./.	10:104479909	14:78082979	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
VAV3	ITGAX	-/.	+/.	1:107670554	16:31365331	intron	intron	translocation	0	0	0	20	4	low	.	.	.	.	.	ENSG00000134215	ENSG00000140678	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01166	FP236383.3	-/.	+/.	10:132962352	21:8397816	intron	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000232903	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
RPS10-NUDT3	AC106886.2	-/.	+/.	6:34421330	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000270800	ENSG00000260899	.	.	upstream	downstream	mismatches(1)	.	.	.
AL035401.1	FP236383.3	-/.	+/.	6:22948035	21:8442050	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000233358	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
IQSEC1	BX284656.1(94468),AL008720.1(17206)	-/.	./.	3:12976120	22:48237697	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000144711	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARID4B	AL049732.1(35156),TRO(43172)	-/.	./.	1:235327619	X:54877290	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL009178.2	KIAA1217	+/+	+/+	6:167796659	10:23941993	exon	intron	translocation	0	0	0	0	0	low	.	.	|Actin_interacting_protein_3(100%)	.	.	ENSG00000269155	ENSG00000120549	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785678	6:42262463	intron	intron	translocation	0	0	0	466	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
LGI2(57572),SEPSECS(31496)	KCNK13(16083),PSMC1(54591)	./.	./.	4:25088518	14:90201936	intergenic	intergenic	translocation	0	0	0	68	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
FP671120.6	FP236383.3	-/-	+/-	21:8210559	21:8414040	exon	intron	duplication/5'-5'	0	0	0	16	27	low	.	.	.	.	.	ENSG00000280800	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AL445466.1(192393),LINC02817(3466)	CTBP1	./.	-/.	1:221326614	4:1220770	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000159692	.	.	downstream	downstream	mismatches(1)	.	.	.
FAM155A	BTBD3(59318),AL109838.1(257381)	-/.	./.	13:107730766	20:11985927	intron	intergenic	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000204442	.	.	.	downstream	downstream	mismatches(1)	.	.	.
WNT5B	FP236383.3	+/.	+/.	12:1530663	21:8442055	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000111186	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
MUC17(240),TRIM56(26382)	MUC17(287),TRIM56(26335)	./.	./.	7:101059099	7:101059146	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
JAZF1	PHKG2	-/.	+/.	7:27940302	16:30749090	intron	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	ENSG00000153814	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	MIR4300HG	+/.	-/.	10:104396370	11:82143178	intron	intron	translocation/3'-3'	0	0	0	558	1095	low	.	.	.	.	.	ENSG00000120051	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
AC022826.2	GDA	-/.	+/.	8:73820101	9:72149978	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000119125	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
SLIT3	CACNA1C	-/.	+/.	5:169243807	12:2681958	intron	CDS	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000184347	ENSG00000151067	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF827	DACT2(25893),AL138918.1(29027)	-/.	./.	4:145799653	6:168345670	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000151612	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC097374.1	AC025183.2(16914),IRX4(609)	-/.	./.	2:94903279	5:1876804	intron	intergenic	translocation	0	0	0	17	8	low	.	.	.	.	.	ENSG00000259848	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	AC025580.2	./.	+/.	3:73205777	15:45462165	intergenic	intron	translocation	0	0	0	15	26	low	.	.	.	.	.	.	ENSG00000259354	.	.	upstream	downstream	mismatches	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	AC025580.2	./.	+/.	3:73205777	15:45462594	intergenic	intron	translocation	0	0	0	15	23	low	.	.	.	.	.	.	ENSG00000259354	.	.	upstream	downstream	mismatches	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749040	intergenic	intron	translocation	0	0	0	0	188	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
UBE2W	AP001059.2(1968),AP001059.1(496)	-/.	./.	8:73820101	21:44244049	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	AC025580.2	./.	+/.	3:73205777	15:45462237	intergenic	intron	translocation	0	0	0	15	29	low	.	.	.	.	.	.	ENSG00000259354	.	.	upstream	downstream	mismatches	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117370	10:113117447	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC003087.1(115234),RNA5SP228(120136)	GPM6B	./.	-/.	7:24012569	X:13801017	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000046653	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650270	21:8397442	intron	intron	translocation/3'-3'	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02459(32873),TBX5(79268)	TBC1D17	./.	+/.	12:114274643	19:49888370	intergenic	intron	translocation	0	0	0	4	3	low	.	.	.	.	.	.	ENSG00000104946	.	.	downstream	downstream	mismatches(1)	.	.	.
AC011747.1(4440),ID2-AS1(39254)	MTRNR2L12	./.	-/.	2:8627382	3:96618115	intergenic	5'UTR	translocation	0	0	0	0	75	low	.	.	.	.	.	.	ENSG00000269028	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CAMK1G	AC103796.1	+/.	-/.	1:209590483	11:27781140	intron	intron	translocation/5'-5'	0	0	0	1	5	low	.	.	.	.	.	ENSG00000008118	ENSG00000255496	.	.	downstream	upstream	mismatches(1)	.	.	.
MSL3	AC079193.1(4368),ZDHHC2(1226)	+/+	./-	X:11758170	8:17155256	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000005302	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.7(392),5_8S_rRNA(875)	+/.	./.	21:8216052	21:8255906	intron	intergenic	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22762),NRXN3(87333)	./.	./.	14:78082946	14:78083040	intergenic	intergenic	duplication/ITD	0	0	0	336	401	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
STAG1	LINC02864	-/.	-/.	3:136752153	18:73168244	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000118007	ENSG00000263711	.	.	upstream	upstream	mismatches(1)	.	.	.
DHRS9	AC004540.1	+/.	+/.	2:169080000	7:26469908	intron	intron	translocation	0	0	0	29	18	low	.	.	.	.	.	ENSG00000073737	ENSG00000214870	.	.	downstream	upstream	mismatches	.	.	.
PKNOX2	LINC02864	+/.	-/.	11:125392824	18:73168244	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000165495	ENSG00000263711	.	.	downstream	upstream	mismatches(1)	.	.	.
CEMIP2(21729),ABHD17B(24033)	C10orf143	./.	-/.	9:71838419	10:130103977	intergenic	intron	translocation	0	0	0	0	49	low	.	.	.	.	.	.	ENSG00000237489	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
FXNP1(22677),NRXN3(87418)	FXNP1(22776),NRXN3(87319)	./.	./.	14:78082955	14:78083054	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(38),low_entropy(20)	.	.	.
AL163541.1	EPB41L3	-/.	-/.	13:109602694	18:5568114	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000285534	ENSG00000082397	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.4	TTTY2B	-/-	-/-	21:8393596	Y:6414449	exon	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000280614	ENSG00000212856	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022826.2	DLG2	-/.	-/.	8:73820108	11:85484188	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000258677	ENSG00000150672	.	.	upstream	upstream	mismatches(2)	.	.	.
MRPS36P5(24794),LINC02461(76135)	FP236383.3	./.	+/.	12:43079180	21:8442061	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TNFAIP3	PHKB	+/.	+/.	6:137873617	16:47491355	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000118503	ENSG00000102893	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683462	15:81683471	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
ATN1	MGAT4C	+/+	-/-	12:6934280	12:86192688	CDS	intron	inversion	0	0	0	0	2	low	.	.	Atrophin-1_family(4%)|N-Acetylglucosaminyltransferase-IV_(GnT-IV)_conserved_region(100%)	.	.	ENSG00000111676	ENSG00000182050	.	.	downstream	downstream	mismatches(1)	.	.	.
EFR3B	LMCD1-AS1	+/.	-/.	2:25125542	3:8367209	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000084710	ENSG00000227110	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022826.2	FP236383.3	-/.	+/.	8:73820101	21:8400368	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000280441	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
GUSBP7(41358),RNU6-1119P(44360)	LINC00871	./.	+/.	5:100109312	14:46105933	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000258700	.	.	downstream	upstream	mismatches(2)	.	.	.
NOS1	AC091806.1	-/-	+/-	12:117265423	X:40289161	CDS	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	ENSG00000236393	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ENPP7P12(23153),DEFB131D(60529)	KDM4C	./.	+/.	8:12229542	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
BBS9	FP671120.4	+/.	+/.	7:33425896	21:8218219	intron	intron	translocation/3'-3'	0	0	0	62	15	low	.	.	.	.	.	ENSG00000122507	ENSG00000278996	.	.	upstream	upstream	duplicates(6),mismatches(5)	.	.	.
TMCO5B	TMCO5B	-/-	-/-	15:33236817	15:33236828	exon	exon	duplication/ITD	0	0	0	14	13	low	.	.	.	.	.	ENSG00000215296	ENSG00000215296	.	.	upstream	downstream	low_entropy(9)	.	.	.
HYDIN2	AC099520.1	+/.	-/.	1:146551982	5:105215899	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000251574	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
USP9YP6	USP9YP6	-/.	-/.	Y:17913559	Y:17913568	intron	intron	duplication/ITD	0	0	0	26	24	low	.	.	.	.	.	ENSG00000226116	ENSG00000226116	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ACOX3	AASDH	-/.	-/.	4:8370597	4:56373512	intron	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087008	ENSG00000157426	.	.	downstream	upstream	mismatches(1)	.	.	.
FMN2	AC019257.8	+/.	+/.	1:240093701	8:1809855	CDS	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000155816	ENSG00000283239	.	.	upstream	downstream	mismatches(1)	.	.	.
RNA5SP231(111490),AC104688.1(190895)	DNAJB6(47802),AC006372.3(990)	./.	./.	7:68835538	7:157465241	intergenic	intergenic	deletion	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ABBA01000935.2	LINC01097(1005),NKX3-2(5490)	-/.	./.	3:91387175	4:13535340	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000283544	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916409	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
PRRT2	FP236383.3	+/+	+/+	16:29813708	21:8397828	CDS	intron	translocation	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000167371	ENSG00000280441	.	.	downstream	upstream	duplicates(1),inconsistently_clipped(2)	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262576	10:104396370	intron	intron	translocation/3'-3'	0	0	0	2136	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4503),AP001994.1(77178)	FXNP1(22701),NRXN3(87394)	./.	./.	11:119744126	14:78082979	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
NDUFB5(3537),H3P13(18310)	PNLDC1(51820),AL035691.1(18464),MAS1(18464)	./.	./.	3:179631184	6:159872524	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4503),AP001994.1(77178)	IGHVIII-38-1(831),IGHV4-39(2581)	./.	./.	11:119744126	14:106419130	intergenic	intergenic	translocation	0	0	0	3002	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AL513321.1(21925),AL592466.1(602)	SPPL2B	./.	+/.	10:65270717	19:2338920	intergenic	intron	translocation	0	0	0	30	15	low	.	.	.	.	.	.	ENSG00000005206	.	.	upstream	downstream	mismatches(1)	.	.	.
AASDH	DLG4	-/.	-/.	4:56373512	17:7190626	intron	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157426	ENSG00000132535	.	.	upstream	downstream	mismatches(1)	.	.	.
AC009133.6	FP236383.3	+/+	+/+	16:29813708	21:8397828	CDS	intron	translocation	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000280893	ENSG00000280441	.	.	downstream	upstream	duplicates(1),inconsistently_clipped(2)	.	.	.
PRDM16	AC114321.1(205467),AC026403.1(21399)	+/.	./.	1:3331292	5:166360906	intron	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000142611	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
BNIP3P2(65636),YME1L1P1(74311)	TNRC6B	./.	+/.	22:15415679	22:40072445	intergenic	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100354	.	.	downstream	upstream	mismatches(1)	.	.	.
ATAD2	AP001978.1(135913),AP001541.1(218592)	-/.	./.	8:123395909	11:79748213	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000156802	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
PRDM16	ERN2	+/.	-/.	1:3331292	16:23702061	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000142611	ENSG00000134398	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PAXBP1(81),C21orf62-AS1(227)	PAXBP1(180),C21orf62-AS1(128)	./.	./.	21:32771873	21:32771972	intergenic	intergenic	duplication/ITD	0	0	0	494	122	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
MTRNR2L12	AC087482.1	-/.	-/.	3:96617456	15:67040912	5'UTR	intron	translocation	0	0	0	70	8	low	.	.	.	.	.	ENSG00000269028	ENSG00000259347	.	.	downstream	upstream	mismatches(1)	.	.	.
GPR39	MARCHF10	+/.	-/.	2:132557876	17:62775503	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000173838	.	.	downstream	upstream	mismatches(1)	.	.	.
CRYBB2	CRYBB2	+/.	+/.	22:25218681	22:25218779	intron	intron	duplication/ITD	0	0	0	0	9	low	.	.	.	.	.	ENSG00000244752	ENSG00000244752	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8214396	MT:1800	intron	exon	translocation/3'-3'	0	0	0	540	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
JAZF1	AC106886.2	-/.	+/.	7:27940302	16:30749090	intron	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	ENSG00000153814	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
NAV1	DDB2	+/.	+/.	1:201648575	11:47233103	5'UTR	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000134369	ENSG00000134574	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
LINC02267	AC002463.1	+/.	+/.	4:96442733	7:112751479	intron	intron	translocation	0	0	0	0	39	low	.	.	.	.	.	ENSG00000248510	ENSG00000223646	.	.	downstream	upstream	mismatches(1)	.	.	.
BNC2	BNC2	-/-	-/-	9:16412702	9:16412766	3'UTR	3'UTR	duplication/ITD	0	0	0	22	22	low	.	.	Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000173068	ENSG00000173068	.	.	upstream	downstream	duplicates(14),low_entropy(7)	.	.	.
AL356157.1(162238),TMEM72-AS1(28777)	AP000282.1	./.	-/.	10:44764342	21:32936437	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000227757	.	.	downstream	downstream	mismatches(1)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	ANKLE2	./.	-/.	5:36444163	12:132728596	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000176915	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LRP1B	AC008124.1(1602),ARID2(329)	-/.	./.	2:141137947	12:45729377	intron	intergenic	translocation	0	0	0	8	2	low	.	.	.	.	.	ENSG00000168702	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BRI3	BCL2(408),KDSR(7190)	+/+	./-	7:98281744	18:63320536	5'UTR	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000164713	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104109.3	FP671120.4	-/.	+/.	5:134225648	21:8214794	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000272772	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
NRIP3	LINC01500	-/-	+/-	11:9003964	14:59014165	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000258583	.	.	upstream	downstream	mismatches(1)	.	.	.
KRT19P4(10027),PBLD(11134)	THSD4	./.	+/.	10:68271526	15:71338277	intergenic	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	.	ENSG00000187720	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC022915.2	BFSP1	+/.	-/.	8:48551630	20:17526167	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253608	ENSG00000125864	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008691.1	AC006486.3	+/.	-/.	5:159645742	19:42217199	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000288671	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
GRIA2(140760),AC093817.2(61896)	AC079760.2	./.	+/.	4:157506835	7:91493507	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000243144	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00303(15347),AL592146.2(7921)	ANXA10	./.	+/.	1:204056612	4:168122498	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000109511	.	.	upstream	upstream	mismatches(1)	.	.	.
GEMIN8(106776),UBE2E4P(107713)	GEMIN8(106789),UBE2E4P(107700)	./.	./.	X:14136669	X:14136682	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021215	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(9),low_entropy(2),merge_adjacent	.	.	.
SAMD3	AL731768.1(189207),SRIP2(195875)	-/.	./.	6:130180681	X:89171560	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164483	.	.	.	upstream	upstream	duplicates(2),mismatches(3)	.	.	.
AC010967.1(152956),AC069157.2(356039)	ANKRD34C-AS1	./.	-/.	2:53114408	15:79162039	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259234	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262600	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AC093515.1	CLEC11A	-/.	+/.	16:7970722	19:50725294	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260289	ENSG00000105472	.	.	upstream	upstream	mismatches(1)	.	.	.
RAB3GAP1	DNTT	+/.	+/.	2:135144415	10:96333569	intron	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000115839	ENSG00000107447	.	.	upstream	downstream	mismatches(2)	.	.	.
FAT1(23083),AC108865.1(141164)	AC016026.1	./.	-/.	4:186749805	22:17796198	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000093100	.	.	upstream	upstream	mismatches(1)	.	.	.
WDR62(1883),OVOL3(4160)	5_8S_rRNA(1750),DUX4L32(19828)	./.	./.	19:36106991	20:29298996	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021212	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(38),low_entropy(2),merge_adjacent	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392796	1:90392809	intron	intron	duplication/ITD	0	0	0	308	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(19),low_entropy(12)	.	.	.
APBB1	AL606970.4(2983),AL606970.2(232)	-/-	./-	11:6410697	6:168229500	CDS	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000166313	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ACTL10	RN7SKP194(124071),SKP2P1(85801)	+/.	./.	20:33667508	X:96534853	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000182584	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NFE2L2	DLG2	-/.	-/.	2:177254991	11:85484193	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000116044	ENSG00000150672	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021209	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(8)	.	.	.
BACH2	IGSF9B(2731),LINC02730(48516)	-/.	./.	6:89979156	11:133959699	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000112182	.	.	.	upstream	downstream	mismatches(1)	.	.	.
H3C10	SQSTM1P1(123822),AL445668.1(8613)	+/.	./.	6:27810927	13:62530738	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	.	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
LINC02156	CRADD	+/.	+/.	12:47415103	12:93846255	exon	intron	duplication	0	0	0	0	24	low	.	.	.	.	.	ENSG00000257906	ENSG00000169372	.	.	upstream	downstream	mismatches(2)	.	.	.
GAU1	GAU1	-/.	-/.	12:4702127	12:4702202	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255474	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LIN52(32941),VSX2(5273)	ENOSF1	./.	-/.	14:74234176	18:700997	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000132199	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01725	H3P28(100180),AL355297.2(11600)	-/.	./.	1:83758213	6:156762617	intron	intergenic	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000233008	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IP6K1(3646),CDHR4(544)	AP003390.1(4497),AP001994.1(77184)	./.	./.	3:49790188	11:119744120	intergenic	intergenic	translocation	0	0	0	14	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
SUGCT	CRADD	+/.	+/.	7:40700029	12:93846255	intron	intron	translocation/5'-5'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000175600	ENSG00000169372	.	.	downstream	downstream	mismatches(2)	.	.	.
U3(104497),GPC1(41723)	FP236383.3	./.	+/.	2:240393940	21:8442059	intergenic	intron	translocation	0	0	0	357	127	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AC117457.1	KCNMB2	+/.	+/.	3:178655093	3:178655110	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000275163	ENSG00000197584	.	.	upstream	downstream	low_entropy(1)	.	.	.
PRPF19	RPL34P29(4462),AC007603.3(15171)	-/.	./.	11:60898094	16:49939814	intron	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000110107	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGAP27P2	SHANK2	+/+	-/-	17:68198934	11:70679138	exon	intron	translocation	0	0	0	0	5	low	.	.	|PDZ_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%)	.	.	ENSG00000267472	ENSG00000162105	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02714(26211),AP003062.2(155097)	CRADD	./.	+/.	11:134790021	12:93846255	intergenic	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000169372	.	.	downstream	downstream	mismatches(2)	.	.	.
GGPS1	SYT8	+/.	+/.	1:235327619	11:1832516	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000149043	.	.	upstream	downstream	mismatches(1)	.	.	.
AL356361.3	IGSF9B(2731),LINC02730(48516)	+/+	./-	1:240008264	11:133959699	exon	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000287102	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FNDC3B	THRAP3P2(6690),SLCO3A1(103063)	+/.	./.	3:172359015	15:91750645	intron	intergenic	translocation	0	0	0	128	21	low	.	.	.	.	.	ENSG00000075420	.	.	.	downstream	upstream	mismatches	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463100	15:45463190	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TNIK	CBWD5	-/.	+/.	3:171458323	9:65675856	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154310	ENSG00000147996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	CT867976.1(150832),AC138776.1(197048)	./.	./.	8:17155256	22:11630475	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(4)	.	.	.
AP003390.1(4427),AP001994.1(77254)	AP003390.1(4526),AP001994.1(77155)	./.	./.	11:119744050	11:119744149	intergenic	intergenic	duplication/ITD	0	0	0	3711	133	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CEP152	MT-RNR1	-/.	+/.	15:48806205	MT:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000103995	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
MATN1-AS1	DNMBP-AS1	+/.	+/.	1:30718592	10:99948205	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186056	ENSG00000227695	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ATP5ME	MT-RNR1	-/.	+/.	4:673239	MT:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000169020	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
AC104777.1	RPL14P5(26394),CRLF2(151054)	-/.	./.	2:150617538	X:1036495	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SEPTIN8	PCAT1	-/.	+/.	5:132788158	8:126750694	intron	intron	translocation/5'-5'	0	0	0	26	18	low	.	.	.	.	.	ENSG00000164402	ENSG00000253438	.	.	upstream	downstream	low_entropy	.	.	.
STAC	MT-RNR1	+/.	+/.	3:36520329	MT:1502	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000144681	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
H3P11(129842),THRAP3P1(53584)	GRIA2(140759),AC093817.2(61897)	./.	./.	3:31399248	4:157506834	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	DLG2	-/.	-/.	3:96618106	11:85484188	5'UTR	intron	translocation	0	0	0	75	279	low	.	.	.	.	.	ENSG00000269028	ENSG00000150672	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AC090204.1	RN7SKP263(6593),AC123567.1(124437)	+/.	./.	8:33013509	12:94015640	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000247134	.	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
THCAT155	PRMT8	-/.	+/.	12:3490676	12:3490689	intron	intron	duplication/5'-5'	0	0	0	8	8	low	.	.	.	.	.	ENSG00000287243	ENSG00000111218	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
AP4B1-AS1	MT-RNR1	+/.	+/.	1:113888331	MT:1502	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000226167	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
DLC1	NCOR1	-/.	-/.	8:13276801	17:16135955	5'UTR	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000164741	ENSG00000141027	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262567	X:133661643	intron	intron	translocation/3'-3'	0	0	0	2136	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AC125611.4	FP236383.3	-/.	+/.	12:49319361	21:8441656	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000258334	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092342	11:88092439	intron	intron	duplication/ITD	0	0	0	1170	1059	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ESPN	BICC1	+/.	+/.	1:6440104	10:58688003	intron	intron	translocation	0	0	0	0	87	low	.	.	.	.	.	ENSG00000187017	ENSG00000122870	.	.	upstream	downstream	duplicates(3),homopolymer(2)	.	.	.
DHFR	SKA3	-/.	-/.	5:80651215	13:21155652	intron	intron	translocation/3'-3'	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000165480	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
HK1	RAB3D	+/.	-/.	10:69344805	19:11335757	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000156515	ENSG00000105514	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01004	DDB2	-/.	+/.	7:105012798	11:47233101	intron	intron	translocation/5'-5'	0	0	0	4	341	low	.	.	.	.	.	ENSG00000228393	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
BTAF1	OR5D14(14702),OR5L1(165)	+/.	./.	10:91950169	11:55811202	intron	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000095564	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC087457.1(6995),TUBAP11(28637)	MT-RNR1	./.	+/.	15:34820500	MT:1505	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
LDB2(155),AC106894.1(74442)	LDB2(224),AC106894.1(74373)	./.	./.	4:16898833	4:16898902	intergenic	intergenic	duplication/ITD	0	0	0	9	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
RREB1	BACH1	+/.	+/.	6:7152861	21:29498375	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000124782	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009093.11	5_8S_rRNA(1691),FP236383.3(122019)	+/.	./.	16:28391222	21:8258624	intron	intergenic	translocation	0	0	0	6	44	low	.	.	.	.	.	ENSG00000288630	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749070	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22671),NRXN3(87424)	FXNP1(22683),NRXN3(87412)	./.	./.	14:78082949	14:78082961	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HMCN2	MT-RNR1	+/.	+/.	9:130363494	MT:1502	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000148357	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
LINC01320	HSPA13(44612),SAMSN1(57132)	+/.	./.	2:33767473	21:14428096	intron	intergenic	translocation	0	0	0	81	4	low	.	.	.	.	.	ENSG00000228262	.	.	.	upstream	upstream	mismatches	.	.	.
MCAM	LIN52(32938),VSX2(5276)	-/.	./.	11:119316729	14:74234173	exon	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000076706	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02727(4624),PHBP17(20210)	RNF212B	./.	+/.	11:123319964	14:23198768	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000215277	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK20	FP671120.4	-/.	+/.	9:87972895	21:8217546	intron	intron	translocation/3'-3'	0	0	0	6	25	low	.	.	.	.	.	ENSG00000156345	ENSG00000278996	.	.	downstream	upstream	mismatches(2)	.	.	.
LARP4	LARP4	+/.	+/.	12:50446333	12:50446346	intron	intron	duplication/ITD	0	0	0	52	39	low	.	.	.	.	.	ENSG00000161813	ENSG00000161813	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC109326.1	TLL1	-/-	+/-	17:43360883	4:166093007	exon	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000279602	ENSG00000038295	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC021087.5	AC019055.1(21875),CISD1P1(86798)	+/+	./-	5:230939	2:19739451	CDS	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000286001	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TGM3(8186),TGM6(31636)	TGM3(8201),TGM6(31621)	./.	./.	20:2349265	20:2349280	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
MFHAS1	LETM1	-/-	-/-	8:8893384	4:1841522	5'UTR	CDS	translocation	0	0	0	0	32	low	.	.	|LETM1-like__RBD(100%)	.	.	ENSG00000147324	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
FBXW7	NEGR1	-/-	-/+	4:152411373	1:72149567	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109670	ENSG00000172260	.	.	upstream	upstream	duplicates(9),mismatches(1)	.	.	.
TTC13	SEMA3E	-/.	-/.	1:230978372	7:83537018	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000143643	ENSG00000170381	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM229B(4708),LAMA4(433)	C11orf53	./.	+/.	6:112107498	11:111249045	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000150750	.	.	downstream	upstream	mismatches(1)	.	.	.
SKI	TOX2	+/.	+/.	1:2229116	20:43916153	CDS	5'UTR	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000157933	ENSG00000124191	.	.	upstream	upstream	mismatches(1)	.	.	.
GALNT2	LINC01608	+/.	-/.	1:230187479	8:110977287	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000253877	.	.	upstream	upstream	mismatches(1)	.	.	.
INPP5A	MAP2K6	+/.	+/.	10:132646299	17:69472424	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000068383	ENSG00000108984	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02789	MT-RNR1	+/.	+/.	1:199202043	MT:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000231718	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
IFT46	MTCYBP13(1410),MTRNR2L1(992)	-/.	./.	11:118566325	17:22522119	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000118096	.	.	.	downstream	upstream	mismatches(1)	.	.	.
THRA	WDR13	+/+	+/+	17:40074428	X:48597821	5'UTR	5'UTR	translocation	0	0	0	0	0	low	.	.	|WD_domain__G-beta_repeat(100%)	.	.	ENSG00000126351	ENSG00000101940	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP1LC3BP1(11863),SLC24A2(31065)	ASIC2	./.	-/.	9:19476387	17:33325908	intergenic	intron	translocation	0	0	0	4	1	low	.	.	.	.	.	.	ENSG00000108684	.	.	downstream	downstream	mismatches(1)	.	.	.
LIMD1	MED15P7	+/.	-/.	3:45593628	22:15642722	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	ENSG00000234381	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C1orf94	FP236383.3	+/+	+/+	1:34177327	21:8442059	5'UTR	intron	translocation	0	0	0	7	5962	low	.	.	.	.	.	ENSG00000142698	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NRP1	RHBDF1(348),MPG(304)	-/.	./.	10:33334709	16:76703	5'UTR	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000099250	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TRIM5	NDUFA1(11969),AKAP14(7206)	-/.	./.	11:5936976	X:119888631	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132256	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL139220.2	AL139220.2	+/.	+/.	1:44069470	1:44069485	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000230615	ENSG00000230615	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	TENM1	+/.	-/.	21:8442059	X:124846213	intron	intron	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000009694	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01470	5_8S_rRNA(2080),FP236383.3(121630)	-/.	./.	5:153185386	21:8259013	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000249484	.	.	.	downstream	upstream	mismatches	.	.	.
SLCO5A1	CDK20	-/.	-/.	8:69690369	9:87972895	intron	intron	translocation/3'-3'	0	0	0	53	6	low	.	.	.	.	.	ENSG00000137571	ENSG00000156345	.	.	downstream	downstream	mismatches(2)	.	.	.
AC078923.1	MT-RNR1	-/.	+/.	12:75861953	MT:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000258077	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
AC093627.22	BCL11B	-/.	-/.	7:117610	14:99226536	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000127152	.	.	upstream	downstream	mismatches(1)	.	.	.
N4BP2	PALM2AKAP2	+/.	+/.	4:40150236	9:109892825	intron	intron	translocation/5'-5'	0	1	0	0	1	low	.	.	.	.	.	ENSG00000078177	ENSG00000157654	.	.	downstream	downstream	min_support	.	.	.
ATP8B4	ATP8B4	-/.	-/.	15:50072922	15:50072937	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000104043	ENSG00000104043	.	.	upstream	downstream	duplicates(3),low_entropy(4)	.	.	.
MBOAT2	FMN1	-/.	-/.	2:8859780	15:33095983	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143797	ENSG00000248905	.	.	downstream	upstream	mismatches(1)	.	.	.
DLEU1	MT-RNR1	+/.	+/.	13:50533058	MT:1503	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000176124	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
UNC5A	LSM14B	+/.	+/.	5:176847694	20:62131771	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000113763	ENSG00000149657	.	.	upstream	upstream	mismatches(1)	.	.	.
DNM1P51	AC114277.1(97006),RNA5SP181(41180)	-/-	./+	15:84408450	5:36444163	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235370	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LSAMP	LSAMP	-/.	-/.	3:116642651	3:116642660	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000185565	ENSG00000185565	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TATDN2	AL132719.1(111644),C14orf177(85171)	+/.	./.	3:10249514	14:98626442	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TLE4	FP671120.4	+/.	+/.	9:79572888	21:8216772	intron	intron	translocation	0	0	0	12	2	low	.	.	.	.	.	ENSG00000106829	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AMOTL1	CCDC178	+/.	-/.	11:94724189	18:32975568	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000166025	ENSG00000166960	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPS7P4(20383),COX6B1P7(18950)	OCIAD2(9622),RNU6-158P(16196)	./.	./.	1:68263438	4:48916559	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ST3GAL5(13880),AC012511.2(15456)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	2:85919079	21:8259024	intergenic	intergenic	translocation	0	0	0	10	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(2)	.	.	.
XCL1(92234),DPT(21165)	RN7SL167P(47384),AP002856.3(135209)	./.	./.	1:168674303	11:131051813	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PHF6(23316),HPRT1(8058)	PHF6(23370),HPRT1(8004)	./.	./.	X:134452107	X:134452161	intergenic	intergenic	duplication/ITD	0	0	0	23	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
GAPDHP75(532267),RNA5SP73(590)	CADM2	./.	+/.	1:189665559	3:85836872	intergenic	intron	translocation	0	0	0	9	19	low	.	.	.	.	.	.	ENSG00000175161	.	.	upstream	upstream	mismatches(1)	.	.	.
FP326651.1(1898),Y_RNA(175114)	DDB2	./.	+/.	9:65398270	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
FOXP2	LMX1B	+/.	+/.	7:114381639	9:126671248	intron	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000128573	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
SYPL2	ZFR(72476),AC074134.1(5542)	+/.	./.	1:109467053	5:32517216	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143028	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RAMP3(65696),AC073968.2(16683)	FP236383.3	./.	+/.	7:45251998	21:8397352	intergenic	intron	translocation	0	0	0	87	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23083),AC108865.1(141164)	NOS2	./.	-/.	4:186749805	17:27777086	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000007171	.	.	upstream	upstream	mismatches(1)	.	.	.
SFN(3788),GPN2(7888)	COMETT	./.	-/.	1:26868244	7:116638127	intergenic	intron	translocation	0	0	0	80	62	low	.	.	.	.	.	.	ENSG00000231210	.	.	upstream	downstream	low_entropy	.	.	.
MRPS36P5(24794),LINC02461(76135)	FP236383.3	./.	+/.	12:43079180	21:8397831	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TRBV24OR9-2(9135),TRBV25OR9-2(3417)	CCNB2	./.	+/.	9:33658749	15:59122737	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000157456	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
FHDC1	PPIP5K2	+/.	+/.	4:152965438	5:103210578	intron	3'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000137460	ENSG00000145725	.	.	downstream	upstream	mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	LINC02548	./.	+/.	4:25088518	11:13838409	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000255411	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
SYPL2	DCLK1	+/.	-/.	1:109467053	13:35785690	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143028	ENSG00000133083	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL139090.1	5_8S_rRNA(2079),FP236383.3(121631)	+/.	./.	6:88378478	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000286871	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC00917(55011),AC092327.1(30131)	FP236383.3	./.	+/.	16:86404699	21:8397825	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(3)	.	.	.
AL138889.1(33124),MIR1275(39217)	UBE2W	./.	-/.	6:33960755	8:73820101	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104343	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021087.4(356),CCDC127(171)	FP671120.4	./.	+/.	5:196697	21:8214781	intergenic	intron	translocation	0	0	0	12	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
EFCAB2(2716),RNU1-132P(4047)	FP236383.3	./.	+/.	1:245129880	21:8398540	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462162	intron	intron	translocation/5'-5'	0	0	0	154	26	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRIM53BP	LINC01484	+/+	-/+	11:89845162	5:173742753	exon	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000166013	ENSG00000253686	.	.	downstream	upstream	mismatches(1)	.	.	.
AL033529.1	THRB-AS1	+/.	+/.	1:32507193	3:24674471	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	ENSG00000228791	.	.	downstream	downstream	mismatches(1)	.	.	.
FMN2	CEMIP2(21729),ABHD17B(24033)	+/.	./.	1:240200874	9:71838419	intron	intergenic	translocation	0	0	0	49	0	low	.	.	.	.	.	ENSG00000155816	.	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
LINC00917(55011),AC092327.1(30131)	FP236383.3	./.	+/.	16:86404699	21:8442055	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(3)	.	.	.
OR52K3P	AL024474.2	+/+	-/+	11:4475690	6:144315697	exon	intron	translocation/5'-5'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000225101	ENSG00000225311	.	.	downstream	upstream	mismatches(1)	.	.	.
HIVEP3	SEPTIN8	-/.	-/.	1:41824835	5:132788158	intron	intron	translocation	0	0	0	6	26	low	.	.	.	.	.	ENSG00000127124	ENSG00000164402	.	.	downstream	upstream	low_entropy	.	.	.
TRERF1	AP001823.1(3428),ELMOD1(760)	-/.	./.	6:42262463	11:107590331	intron	intergenic	translocation	0	0	0	2363	1909	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	upstream	low_entropy	.	.	.
MGAT4C	BCRP9(38369),NPM1P22(2713)	-/.	./.	12:86025258	13:67829163	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000182050	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214788	21:8214900	intron	intron	duplication	0	0	0	5263	63	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DLG2	MT-RNR2	-/.	+/.	11:85484188	MT:1800	intron	exon	translocation	0	0	0	279	.	low	.	.	.	.	.	ENSG00000150672	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
MGMT	MIR4713HG	+/.	+/.	10:129544313	15:51184193	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000170430	ENSG00000259240	.	.	upstream	downstream	mismatches(1)	.	.	.
LETM1	CHST15(269177),OAT(34528)	-/.	./.	4:1841522	10:124362775	CDS	intergenic	translocation	0	0	0	32	5	low	.	.	.	.	.	ENSG00000168924	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01320	FP236383.3	+/.	+/.	2:33767489	21:8397434	intron	intron	translocation	0	0	0	72	543	low	.	.	.	.	.	ENSG00000228262	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
LINC01060	AP001599.1	+/.	+/.	4:188533877	21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000249378	ENSG00000223563	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC096588.1	5_8S_rRNA(2692),FP236383.3(121018)	-/.	./.	4:59626866	21:8259625	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249392	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2W	LINC01791	-/.	+/.	8:73820119	19:31189090	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000267777	.	.	downstream	downstream	mismatches(2)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	DLG2	./.	-/.	3:95431526	11:85484189	intergenic	intron	translocation	0	0	0	45	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	duplicates(12),mismatches(9)	.	.	.
AC084337.2	FP671120.7(733),5_8S_rRNA(534)	+/.	./.	11:6496218	21:8256247	intron	intergenic	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
HES4	LINC01320	-/-	+/-	1:999810	2:33767498	CDS	intron	translocation/5'-5'	0	0	0	0	72	low	.	.	Helix-loop-helix_DNA-binding_domain(3%)|	.	.	ENSG00000188290	ENSG00000228262	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02669	LINC02669	-/.	-/.	10:3470846	10:3470945	intron	intron	duplication/ITD	0	0	0	17	16	low	.	.	.	.	.	ENSG00000233321	ENSG00000233321	.	.	upstream	downstream	duplicates(5),low_entropy(6)	.	.	.
FARS2	DPYSL4	+/.	+/.	6:5782069	10:132203748	intron	exon	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000145982	ENSG00000151640	.	.	downstream	upstream	mismatches(1)	.	.	.
TBC1D8	NKX2-2(8623),AL133325.2(7435)	-/.	./.	2:101083032	20:21522687	intron	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000204634	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
CFAP58	AP003390.1(4478),AP001994.1(77203)	+/.	./.	10:104396370	11:119744101	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	duplicates	.	.	.
SEMA6A	KMT2C	-/.	-/.	5:116464082	7:152384548	intron	intron	translocation/5'-5'	0	0	0	0	177	low	.	.	.	.	.	ENSG00000092421	ENSG00000055609	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01179(109724),TLL1(735)	MT-RNR2	./.	+/.	4:165872502	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DHFR	FP671120.4	-/.	+/.	5:80650918	21:8214396	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000228716	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
SH3PXD2B	MPHOSPH9	-/.	-/.	5:172340336	12:123233991	intron	intron	translocation	0	0	0	4	8	low	.	.	.	.	.	ENSG00000174705	ENSG00000051825	.	.	upstream	downstream	mismatches(1)	.	.	.
TTC4	TTC4	+/.	+/.	1:54736176	1:54736191	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000243725	ENSG00000243725	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
AL138709.1(15350),ENOX1(16975)	CBFA2T2	./.	+/.	13:43196543	20:33585141	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000078699	.	.	downstream	upstream	mismatches(1)	.	.	.
CHRNB3	CDK5R2	+/+	+/+	8:42737021	2:218959979	3'UTR	CDS	translocation	0	0	0	4	0	low	.	.	Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)|Cyclin-dependent_kinase_5_activator_protein(100%)	.	.	ENSG00000147432	ENSG00000171450	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01320	DLG2	+/.	-/.	2:33767489	11:85484188	intron	intron	translocation/5'-5'	0	0	0	72	279	low	.	.	.	.	.	ENSG00000228262	ENSG00000150672	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
FP236383.3	GNL3L	+/.	+/.	21:8433768	X:54578338	intron	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	ENSG00000280441	ENSG00000130119	.	.	upstream	downstream	mismatches(2)	.	.	.
MAPRE1P2(14618),AC093606.1(123962)	XRCC6P2(65225),MAMLD1(63301)	./.	./.	4:33026364	X:150298121	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC006369.2(39919),AC010878.1(29950)	SDK1	./.	+/.	2:37786965	7:3589424	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000146555	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	8:73820101	21:8441661	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TPK1	SUPT5H	-/.	+/.	7:144580538	19:39458232	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000196511	ENSG00000196235	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092999.1(88054),IQCJ-SCHIP1(2360)	DACH2	./.	+/.	3:158959875	X:86655735	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000126733	.	.	upstream	downstream	mismatches(1)	.	.	.
NALCN-AS1	GNL3L	+/.	+/.	13:100887372	X:54578337	intron	intron	translocation/5'-5'	0	0	0	2	42	low	.	.	.	.	.	ENSG00000233009	ENSG00000130119	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
GAPDHP75(532267),RNA5SP73(590)	EPB41L3	./.	-/.	1:189665559	18:5568113	intergenic	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	.	ENSG00000082397	.	.	upstream	downstream	mismatches(1)	.	.	.
ADCY1	AC106729.1(19612),AC106733.1(156479)	+/.	./.	7:45682481	16:76947781	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RAB3C	VENTXP2(41630),AL590681.1(46762)	+/.	./.	5:58801228	13:83949411	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000152932	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479898	14:106419138	intron	intergenic	translocation	0	0	0	2216	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
MAP3K14-AS1	AC010967.1(152956),AC069157.2(356039)	+/+	./+	17:45262221	2:53114408	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000267278	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02530(23830),PHACTR1(107320)	ERN2	./.	-/.	6:12609234	16:23702061	intergenic	intron	translocation	0	0	0	2	8	low	.	.	.	.	.	.	ENSG00000134398	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	3:96618106	21:8258619	5'UTR	intergenic	translocation	0	0	0	75	543	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AC094105.2	DHRS2(46906),AL160237.1(7252)	+/.	./.	5:2957507	14:23692545	intron	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000248736	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262584	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8397434	MT:1800	intron	exon	translocation/3'-3'	0	0	0	543	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
HES4	MT-RNR2	-/-	+/+	1:999810	MT:1791	CDS	exon	translocation	0	0	0	0	.	low	.	.	Helix-loop-helix_DNA-binding_domain(3%)|	.	.	ENSG00000188290	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
MADD	GSE1	+/.	+/.	11:47324744	16:85509559	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000110514	ENSG00000131149	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
STK10	ZNF529	-/.	-/.	5:172090368	19:36549374	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000072786	ENSG00000186020	.	.	downstream	upstream	mismatches(1)	.	.	.
AASDH	KSR2(13731),RFC5(30867)	-/.	./.	4:56373512	12:117982721	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157426	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PLEKHG1	AC122688.4(18591),TMEM132B(3327)	+/.	./.	6:150839396	12:125183509	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120278	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SUSD5(52300),FBXL2(5915)	AC005258.1	./.	+/.	3:33271110	19:2338920	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000273734	.	.	upstream	downstream	mismatches(1)	.	.	.
DHRS2(46906),AL160237.1(7252)	SHISAL1	./.	-/.	14:23692545	22:44309231	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000138944	.	.	downstream	downstream	mismatches(1)	.	.	.
NFIB	FP236383.3	-/.	+/.	9:14346299	21:8442145	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000147862	ENSG00000280441	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
AL355863.1(134653),BTBD7P2(82877)	ANKRD34C-AS1	./.	-/.	10:111239901	15:79162042	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000259234	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45462139	15:45462237	intron	intron	duplication/ITD	0	0	0	26	29	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262592	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
TATDN2	AC093627.22	+/.	-/.	3:10249513	7:117610	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000287883	.	.	upstream	upstream	duplicates(2),mismatches(5)	.	.	.
CIAO3	AC068254.2	-/-	+/-	16:737080	18:69662533	exon	exon	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000103245	ENSG00000279221	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LATS2	AC105094.2	-/-	-/-	13:21061483	18:61699638	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150457	ENSG00000267175	.	.	upstream	downstream	mismatches(1)	.	.	.
ROBO2	AC104042.1(183659),AC061997.1(820599)	+/.	./.	3:76113713	11:36881526	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000185008	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BRK1P2(18861),LINC00380(44439)	CCDC178	./.	-/.	13:91042815	18:32975568	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749078	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC022384.1	AC093627.22	+/.	-/.	3:10249513	7:117610	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000287883	.	.	upstream	upstream	duplicates(2),mismatches(5)	.	.	.
PLK4	FP671120.4	+/+	+/+	4:127890011	21:8214783	CDS	intron	translocation	0	0	0	0	5263	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000142731	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
CC2D2B	FP236383.3	+/.	+/.	10:95984176	21:8442660	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000188649	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463097	15:45463189	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AL357146.1(3812),RNA5SP220(61058)	OCRL	./.	+/.	6:140097533	X:129560028	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000122126	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104051.1	FP671120.4	-/.	+/.	8:57677225	21:8214784	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000253322	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02788	AP000445.2(7167),TMA16P1(28017)	+/.	./.	1:90839730	11:58768220	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000285532	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01169(15213),SMAD6(1229)	RBFOX1	./.	+/.	15:66701007	16:6222319	intergenic	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	.	ENSG00000078328	.	.	downstream	upstream	mismatches(1)	.	.	.
GABBR2	MYO5A	-/.	-/.	9:98697847	15:52440807	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136928	ENSG00000197535	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CABLES2	AL121832.1(4488),GATA5(11332)	-/.	./.	20:62396516	20:62452165	intron	intergenic	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	ENSG00000149679	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC006504.5	BPY2C	+/.	-/.	19:27961838	Y:25044576	intron	intron	translocation/3'-3'	0	0	0	4	9	low	.	.	.	.	.	ENSG00000267575	ENSG00000185894	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL357146.1(3812),RNA5SP220(61058)	LINC02720(72431),AP003398.1(122060)	./.	./.	6:140097533	11:80835257	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CLIP3	NAP1L4	-/-	-/+	19:36026157	11:2979874	CDS	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	ENSG00000205531	.	.	upstream	upstream	mismatches(1)	.	.	.
GRK1	LIN52(32941),VSX2(5273)	+/.	./.	13:113731117	14:74234176	intron	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000185974	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PTPRD	AC092275.1	-/.	+/.	9:10556369	16:85260116	intron	intron	translocation	0	0	0	12	19	low	.	.	.	.	.	ENSG00000153707	ENSG00000287787	.	.	upstream	upstream	mismatches(1)	.	.	.
COX11	CCDC7	-/-	+/-	17:54962160	10:32589154	3'UTR	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	Cytochrome_c_oxidase_assembly_protein_CtaG/Cox11(100%)|	.	.	ENSG00000166260	ENSG00000216937	.	.	upstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683466	15:81683475	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC012513.1	AP001823.1(3429),ELMOD1(759)	+/.	./.	2:216263455	11:107590332	intron	intergenic	translocation	0	0	0	9	1909	low	.	.	.	.	.	ENSG00000231092	.	.	.	upstream	upstream	mismatches	.	.	.
AC092275.1	NAPB	+/.	-/.	16:85260115	20:23420828	intron	intron	translocation/3'-3'	0	0	0	19	0	low	.	.	.	.	.	ENSG00000287787	ENSG00000125814	.	.	upstream	downstream	mismatches(1)	.	.	.
COX11	OCRL	-/-	+/-	17:54962160	X:129560028	3'UTR	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	Cytochrome_c_oxidase_assembly_protein_CtaG/Cox11(100%)|	.	.	ENSG00000166260	ENSG00000122126	.	.	upstream	downstream	mismatches(1)	.	.	.
SMNDC1(50247),AL355512.1(73655)	FP236383.3	./.	+/.	10:110355185	21:8442054	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NPHP4	GRID1	-/.	-/.	1:5885019	10:86184329	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000131697	ENSG00000182771	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
STK4	LINC00114(197),ETS2(57526)	+/.	./.	20:44977007	21:38747657	intron	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000101109	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02339(168911),RAC1P8(208293)	B3GNTL1(18825),METRNL(8974)	./.	./.	13:61596857	17:83070635	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KIF1A	FP236383.3	-/.	+/.	2:240741632	21:8397828	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000130294	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
C6orf201	AC010319.2	+/+	-/-	6:4079685	19:17456613	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000185689	ENSG00000269035	.	.	downstream	downstream	mismatches(1)	.	.	.
COX11	LINC02720(72431),AP003398.1(122060)	-/-	./-	17:54962160	11:80835257	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	Cytochrome_c_oxidase_assembly_protein_CtaG/Cox11(100%)|	.	.	ENSG00000166260	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MTND1P27(582),LRP1B(9356)	RN7SKP263(6593),AC123567.1(124437)	./.	./.	2:140222067	12:94015640	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
RPS10-NUDT3	FP236383.3	-/.	+/.	6:34315128	21:8444816	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000270800	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022826.2	ZNF592(4826),ALPK3(6085)	-/.	./.	8:73820102	15:84811271	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4497),AP001994.1(77184)	GPC3	./.	-/.	11:119744120	X:133661643	intergenic	intron	translocation	0	0	0	3583	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
ADAMTS7	XRCC6P2(65218),MAMLD1(63308)	-/.	./.	15:78793550	X:150298114	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000136378	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CPXM2	MT-RNR2	-/.	+/.	10:123931701	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000121898	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	12:16193776	12:16193829	intron	intron	duplication/ITD	0	0	0	28	28	low	.	.	.	.	.	ENSG00000188991	ENSG00000188991	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC004946.1	NAA40(5467),RNU6-45P(7684)	-/.	./.	7:120162061	11:63962786	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000233417	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4496),AP001994.1(77185)	+/.	./.	1:225078903	11:119744119	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
SLC2A9	MIR212(624),HIC1(3150)	-/.	./.	4:9774826	17:2051004	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC068473.3	FP671120.4	+/.	+/.	18:79577928	21:8215506	exon	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000267287	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
EEF1B2P2(28127),LINC02219(1856)	MACROD1	./.	-/.	5:68188020	11:64038954	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000133315	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262573	X:133661643	intron	intron	translocation/3'-3'	0	0	0	2136	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
RIC1	RIC1	+/.	+/.	9:5647936	9:5647952	intron	intron	duplication/ITD	0	0	0	1	2	low	.	.	.	.	.	ENSG00000107036	ENSG00000107036	.	.	upstream	downstream	low_entropy(1)	.	.	.
SFN(3788),GPN2(7888)	LRP1B	./.	-/.	1:26868244	2:141096626	intergenic	intron	translocation	0	0	0	80	12	low	.	.	.	.	.	.	ENSG00000168702	.	.	upstream	upstream	low_entropy	.	.	.
FXNP1(22687),NRXN3(87408)	FXNP1(22766),NRXN3(87329)	./.	./.	14:78082965	14:78083044	intergenic	intergenic	duplication/ITD	0	0	0	424	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
UBE2W	IQCH-AS1	-/.	-/.	8:73820121	15:67310431	intron	intron	translocation	0	0	0	164	40	low	.	.	.	.	.	ENSG00000104343	ENSG00000259673	.	.	downstream	upstream	mismatches(2)	.	.	.
PLK4	FP236383.3	+/+	+/+	4:127890011	21:8442047	CDS	intron	translocation	0	0	0	0	5962	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000142731	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC092440.1(27537),RFPL4AP3(201830)	AC092100.1	./.	-/.	4:23313110	7:69204253	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000225718	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22683),NRXN3(87412)	./.	./.	14:78082946	14:78082961	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(16),low_entropy(11)	.	.	.
HDLBP	AL117190.1	-/.	+/.	2:241239879	14:100900533	intron	intron	translocation/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000115677	ENSG00000258399	.	.	upstream	downstream	mismatches(1)	.	.	.
VAMP3(2231),PER3(657)	AP002892.1	./.	+/.	1:7783663	11:72358539	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255672	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	12:105046145	12:105046194	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000151131	.	.	upstream	downstream	duplicates(291),low_entropy(25)	.	.	.
MRPS18A	AC009070.1	-/.	-/.	6:43677494	16:80903741	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000096080	ENSG00000286221	.	.	downstream	downstream	mismatches(1)	.	.	.
AL139383.1	FP236383.3	-/.	+/.	13:33517096	21:8441653	intron	intron	translocation/3'-3'	0	0	0	2	546	low	.	.	.	.	.	ENSG00000230490	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
HDLBP	MEG8	-/.	+/.	2:241239879	14:100900533	intron	intron	translocation/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000115677	ENSG00000225746	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL21P18(19879),RNA5SP362(8628)	RPL21P18(19891),RNA5SP362(8616)	./.	./.	12:66057593	12:66057605	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
C16orf91(5657),PERCC1(4665)	FP236383.3	./.	+/.	16:1426413	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
NALCN-AS1	LINC01791	+/.	+/.	13:100887373	19:31189093	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000233009	ENSG00000267777	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL21P18(19872),RNA5SP362(8635)	RPL21P18(19962),RNA5SP362(8545)	./.	./.	12:66057586	12:66057676	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(5)	.	.	.
LINC02552	ZNF606	-/.	-/.	11:104549826	19:57994856	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000256422	ENSG00000166704	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
GDI2	AC093515.1	-/.	-/.	10:5812961	16:7970723	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000057608	ENSG00000260289	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023632.3(700),AC023632.4(3452)	AC008014.1(15861),AC079906.1(77859)	./.	./.	8:94590959	12:46892645	intergenic	intergenic	translocation	0	0	0	22	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL157378.1(50260),AL078595.1(99819)	FP236383.3	./.	+/.	6:94244918	21:8444816	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAJC22(8927),SPATS2(111)	BCL7A	./.	+/.	12:49366473	12:122022911	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000110987	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
LINC01036	FP236383.3	+/.	+/.	1:187443964	21:8397821	exon	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000230426	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SMYD2	C15orf61(10798),AC016355.1(128)	+/.	./.	1:214335680	15:67540944	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143499	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01685(7789),HSPA5P1(184622)	MT-RNR2	./.	+/.	1:38524309	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
UGT1A10	NDST1	+/.	+/.	2:233640220	5:150502747	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242515	ENSG00000070614	.	.	upstream	upstream	mismatches(1)	.	.	.
LRAT	ZNF43(30934),ZNF208(49899)	+/.	./.	4:154635449	19:21883059	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000121207	.	.	.	upstream	downstream	mismatches(1)	.	.	.
EXO1	AL359636.2	+/.	+/.	1:241890552	9:122558264	intron	intron	translocation/5'-5'	0	0	0	1	15	low	.	.	.	.	.	ENSG00000174371	ENSG00000234156	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214782	21:8397833	intron	intron	duplication	0	0	0	5263	5614	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(2),homopolymer(2)	.	.	.
ATF4P4	PLEKHM1P1	+/.	-/.	11:113789588	17:64781161	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000256167	ENSG00000214176	.	.	upstream	upstream	mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47214902	21:8438949	intron	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SCAF1	FP236383.3	+/.	+/.	19:49657357	21:8435133	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000126461	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL136366.1	5_8S_rRNA(2177),FP236383.3(121533)	+/.	./.	9:14346299	21:8259110	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000225472	.	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
ZIC5	MEGF8	-/.	+/.	13:99971192	19:42370848	CDS	intron	translocation/3'-3'	0	0	0	12	2	low	.	.	.	.	.	ENSG00000139800	ENSG00000105429	.	.	downstream	upstream	mismatches	.	.	.
FP671120.3(3891),FP671120.7(552)	FP236383.3	./.	+/.	21:8254040	21:8397826	intergenic	intron	inversion	0	0	0	57	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
LRAT	ERVK13-1	+/.	-/.	4:154635449	16:2663078	intron	exon	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000121207	ENSG00000260565	.	.	upstream	downstream	mismatches(1)	.	.	.
TLE4	TMEM266	+/.	+/.	9:79572888	15:76086929	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000169758	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC022384.1	DACT2(25892),AL138918.1(29028)	+/.	./.	3:10249513	6:168345669	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NTRK2	IGHD	+/.	-/.	9:84975073	14:105837605	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148053	ENSG00000211898	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF366	HMGB3P23(424799),RNA5SP281(223599)	-/.	./.	5:72492302	9:32069959	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000178175	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UBE2D3	KCND2	-/.	+/.	4:102811283	7:120626723	exon	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000109332	ENSG00000184408	.	.	downstream	upstream	mismatches(1)	.	.	.
RGMB	HMGA2	+/.	+/.	5:98771438	12:65825652	intron	intron	translocation/3'-3'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	ENSG00000149948	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GCNT1P5(3559),AC004921.2(21619)	SOX21-AS1(58798),LINC00557(97813)	./.	./.	7:77465698	13:94862228	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC016168.4	AC023347.1(105258),YWHAZP2(108185)	-/-	./-	17:76840865	2:126449250	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000287836	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PRR35	AL023882.1	+/+	+/-	16:563306	16:1045659	CDS	intergenic	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000161992	ENSG00000287855	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ZNF346	AL163974.1(22793),LINC00523(45131)	+/.	./.	5:177029147	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000113761	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KALRN	LINC02864	+/.	-/.	3:124250687	18:73168244	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160145	ENSG00000263711	.	.	downstream	upstream	duplicates(3),mismatches(3)	.	.	.
AC008269.1	AC022826.2	+/.	-/.	2:206862123	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	ENSG00000258677	.	.	downstream	upstream	duplicates(5)	.	.	.
TBC1D32	KRT8P27(3758),GRPEL2P2(69547)	-/.	./.	6:121333739	X:64628331	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000146350	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01331(79559),ENC1(10871)	TNNT3	./.	+/.	5:74616535	11:1925487	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000130595	.	.	upstream	upstream	mismatches(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	IL20RB(270166),RNA5SP142(236883)	./.	./.	1:7886187	3:137281251	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262568	intron	intron	translocation	0	0	0	144	2136	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
AL133335.1(198311),DOK5(7740)	U6(213872),ABCD1P4(31950)	./.	./.	20:54467853	22:16355744	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KRIT1	SLCO5A1	-/.	-/.	7:92234877	8:69690369	CDS	intron	translocation/3'-3'	0	0	0	0	53	low	.	.	.	.	.	ENSG00000001631	ENSG00000137571	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001823.1(3431),ELMOD1(757)	AP001823.1(3530),ELMOD1(658)	./.	./.	11:107590334	11:107590433	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC073346.1(93989),AC073137.1(175370)	AP003390.1(4501),AP001994.1(77180)	./.	./.	7:113240319	11:119744124	intergenic	intergenic	translocation	0	0	0	5	3002	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
ENPP6	ENPP6	-/.	-/.	4:184122405	4:184122419	intron	intron	duplication/ITD	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	ENSG00000164303	.	.	upstream	downstream	duplicates(12),low_entropy(2)	.	.	.
SLC6A12	HYDIN	-/.	-/.	12:199334	16:71158143	intron	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	ENSG00000111181	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC068633.1(81088),IGSF11(8633)	FAT1(23082),AC108865.1(141165)	./.	./.	3:118891924	4:186749804	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
THSD7B	AC099520.1	+/.	-/.	2:137578927	5:104886943	intron	exon	translocation	0	0	0	2	3	low	.	.	.	.	.	ENSG00000144229	ENSG00000251574	.	.	downstream	downstream	mismatches(1)	.	.	.
ADGB	LINC02864	+/.	-/.	6:146750730	18:73168244	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000118492	ENSG00000263711	.	.	downstream	upstream	duplicates(4),mismatches(4)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8211705	21:8214403	intron	intron	inversion/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
LRP1B	C7orf33	-/.	+/.	2:141137944	7:148605538	intron	intron	translocation/3'-3'	0	0	0	8	10	low	.	.	.	.	.	ENSG00000168702	ENSG00000170279	.	.	downstream	upstream	mismatches(1)	.	.	.
ENPEP	AC109630.1	+/.	+/.	4:110376162	15:39489500	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138792	ENSG00000259269	.	.	upstream	downstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	12:105046145	12:105046193	intron	intron	duplication/3'-3'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000136010	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
TNIP3(17771),QRFPR(83405)	AL139815.1	./.	-/.	4:121245237	10:23103183	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000286924	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	AC108681.1(18141),AC068295.1(109365)	./.	./.	3:95431526	3:187823399	intergenic	intergenic	inversion	0	0	0	45	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(4),mismatches(4)	.	.	.
ROBO2(144776),RNU6-217P(17001)	FP236383.3	./.	+/.	3:77794740	21:8444134	intergenic	intron	translocation	0	0	0	4	19	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AGBL4	MFSD1	-/.	+/.	1:49533759	3:158750074	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000186094	ENSG00000118855	.	.	downstream	upstream	mismatches(1)	.	.	.
AC245123.1	AC245123.1	-/.	-/.	8:2565381	8:2565435	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000277526	ENSG00000277526	.	.	upstream	downstream	low_entropy(4)	.	.	.
AC009161.1(206459),AC009110.1(32167)	FP236383.3	./.	+/.	16:62564205	21:8441659	intergenic	intron	translocation	0	0	0	21	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
POM121C	ABCA10	-/.	-/.	7:75458117	17:69221022	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000272391	ENSG00000154263	.	.	downstream	downstream	mismatches(1)	.	.	.
IGSF21	ACOX3	+/.	-/.	1:18369039	4:8370595	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000117154	ENSG00000087008	.	.	upstream	downstream	homopolymer(1)	.	.	.
IQANK1	NRG3	+/.	+/.	8:143790083	10:82804029	exon	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000203499	ENSG00000185737	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PDCD6-AHRR	FP236383.3	+/.	+/.	5:282264	21:8442047	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000288622	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
AC138474.1	AP001599.1	-/-	+/-	19:13014316	21:26914103	exon	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000267417	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AC022384.1	./.	+/.	2:240393940	3:10249513	intergenic	CDS	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000272410	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
ANAPC5	HDAC6	-/.	+/.	12:121380377	X:48801481	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000089053	ENSG00000094631	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	LIG1	./+	-/-	2:218108703	19:48149841	intergenic	CDS/splice-site	translocation	0	0	0	193	0	low	.	.	|ATP_dependent_DNA_ligase_C_terminal_region________(100%),ATP_dependent_DNA_ligase_domain(100%),DNA_ligase_N_terminus(100%)	.	.	.	ENSG00000105486	.	.	downstream	downstream	homopolymer(1)	.	.	.
U3(104497),GPC1(41723)	FP671120.4	./.	+/.	2:240393940	21:8214795	intergenic	intron	translocation	0	0	0	357	293	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022384.1	NRP1	+/.	-/.	3:10249513	10:33334709	CDS	5'UTR	translocation/3'-3'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000272410	ENSG00000099250	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
EMB	PABPC3	-/.	+/.	5:50440800	13:24940990	intron	intergenic	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000170571	ENSG00000151846	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPL6P21(23500),DGKB(50169)	OR8I2	./.	+/.	7:14094880	11:56093281	intergenic	5'UTR	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000172154	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	WRNIP1	./.	+/.	2:53114408	6:2781058	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000124535	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	CT867976.1(150830),AC138776.1(197050)	+/.	./.	21:8211703	22:11630473	intron	intergenic	translocation	0	0	0	110	8	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MSH3	TIAM2	+/.	+/.	5:80854005	6:155155293	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000146426	.	.	downstream	downstream	mismatches(1)	.	.	.
EPRS1	FP671120.4	-/.	+/.	1:219976244	21:8215396	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000136628	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
IPO9-AS1	NAV1	-/.	+/.	1:201702673	1:201702688	intron	intron	duplication/5'-5'	0	0	0	6	6	low	.	.	.	.	.	ENSG00000231871	ENSG00000134369	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MYRFL	TCF12	+/.	+/.	12:69884018	15:57216571	intron	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000166268	ENSG00000140262	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105148.1(158330),AC116634.1(46057)	FP236383.3	./.	+/.	4:167900617	21:8398430	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TMIGD3	SERGEF	-/.	-/.	1:111491206	11:18012760	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000121933	ENSG00000129158	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	TAFA5	-/.	+/.	3:96617455	22:48741205	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000219438	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KCNK1	AC009505.1	+/.	-/.	1:233615174	2:105949153	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000135750	ENSG00000234162	.	.	downstream	downstream	mismatches(1)	.	.	.
GCLM	ANKFY1	-/.	-/.	1:93899686	17:4241636	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000023909	ENSG00000185722	.	.	downstream	downstream	mismatches(1)	.	.	.
GCLM	OR4A18P(1093),OR4A19P(741)	-/.	./.	1:93899686	11:49919571	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000023909	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ITGA2B	C10orf143	-/-	-/+	17:44384408	10:130103979	exon	intron	translocation/5'-5'	0	0	0	0	49	low	.	.	.	.	.	ENSG00000005961	ENSG00000237489	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
CNTNAP3	AC104574.2	-/.	-/.	9:39158316	15:61611250	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000106714	ENSG00000259616	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAH14	AP005436.1	+/.	-/.	1:225078904	11:88092427	intron	intron	translocation	0	0	0	144	1059	low	.	.	.	.	.	ENSG00000185842	ENSG00000255102	.	.	downstream	downstream	mismatches	.	.	.
AL591222.3(180982),AL512635.1(182470)	AC092275.1	./.	+/.	9:20148976	16:85260116	intergenic	intron	translocation	0	0	0	2	19	low	.	.	.	.	.	.	ENSG00000287787	.	.	upstream	upstream	mismatches(1)	.	.	.
C16orf95	KIF26B	-/-	+/-	16:87317153	1:245500131	CDS	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000260456	ENSG00000162849	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
SCAF1	FP671120.3(1959),FP671120.7(2484)	+/.	./.	19:49657357	21:8252108	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000126461	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GDA	GCNT1	+/.	+/.	9:72149978	9:76571859	intron	intron	inversion/3'-3'	0	0	0	0	38	low	.	.	.	.	.	ENSG00000119125	ENSG00000187210	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022384.1	SLC2A6(8612),MYMK(26847)	+/.	./.	3:10249513	9:133487739	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214800	21:8214800	intron	intron	duplication/ITD	0	0	0	5263	293	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(2),homopolymer(4)	.	.	.
MEGF6	KIAA2012	-/.	+/.	1:3565378	2:202083777	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162591	ENSG00000182329	.	.	downstream	downstream	mismatches(1)	.	.	.
UTS2(32674),TNFRSF9(29685)	GAU1	./.	-/.	1:7886186	12:4719198	intergenic	intron	translocation	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000255474	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA2012	CHST15(269175),OAT(34530)	+/.	./.	2:202083779	10:124362773	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC092910.3	AC092910.3	+/.	+/.	3:120125706	3:120125747	intron	intron	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	ENSG00000242622	ENSG00000242622	.	.	upstream	downstream	duplicates(1)	.	.	.
RBMS3	RBMS3	+/.	+/.	3:29884426	3:29884437	intron	intron	duplication/ITD	0	0	0	14	0	low	.	.	.	.	.	ENSG00000144642	ENSG00000144642	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396558	8:22396567	intron	intron	duplication/ITD	0	0	0	229	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP003390.1(4511),AP001994.1(77170)	FXNP1(22668),NRXN3(87427)	./.	./.	11:119744134	14:78082946	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
DLG2	NALCN-AS1	-/.	+/.	11:85484198	13:100887357	intron	intron	translocation	0	0	0	279	2	low	.	.	.	.	.	ENSG00000150672	ENSG00000233009	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP671120.3(587),FP671120.7(3856)	FP236383.3	./.	+/.	21:8250736	21:8394738	intergenic	intron	deletion/read-through	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC6A12	LGMNP1(118014),STARP1(232445)	-/.	./.	12:199333	13:65077410	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111181	.	.	.	upstream	downstream	mismatches(1)	.	.	.
UGT1A9	THEMIS	+/.	-/.	2:233766074	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000241119	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	TATDN2	./.	+/.	2:240393940	3:10249513	intergenic	CDS	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000157014	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
LINC01060	DDB2	+/.	+/.	4:188533876	11:47233103	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000249378	ENSG00000134574	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
TTC22	AC026396.1(38622),AL731533.1(34913)	-/-	./+	1:54781659	10:2975063	CDS	intergenic	translocation	0	0	0	1	0	low	.	.	Tetratricopeptide_repeat(100%)|	.	.	ENSG00000006555	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CCDC181	BBS9	-/.	+/.	1:169400207	7:33425896	intron	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000117477	ENSG00000122507	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC016687.3	MSN(5967),NANOGP9(24843)	-/.	./.	4:34005923	X:65747898	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000250954	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8215023	21:8438949	intron	intron	deletion/read-through	0	0	0	4	139	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NOC2LP2(16145),RHOQP2(267)	SPIDR	./.	+/.	2:131460732	8:47318602	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164808	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479905	intron	intron	translocation	0	0	0	22	1761	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
SLC23A2	FP236383.3	-/.	+/.	20:4945995	21:8442660	intron	intron	translocation	0	0	0	8	23	low	.	.	.	.	.	ENSG00000089057	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(3)	.	.	.
EPRS1	FP236383.3	-/.	+/.	1:219976244	21:8398430	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136628	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1689),FP236383.3(122021)	Z99497.2(139327),AL589669.1(77252)	./.	./.	21:8258622	X:147103812	intergenic	intergenic	translocation	0	0	0	44	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	PKNOX2	./.	+/.	3:95431526	11:125392824	intergenic	intron	translocation	0	0	0	45	3	low	.	.	.	.	.	.	ENSG00000165495	.	.	downstream	downstream	mismatches(1)	.	.	.
AL645608.6	MIR4708(38661),FUT8(36748)	+/.	./.	1:905264	14:65373844	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272438	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP001977.1(22080),AP001924.1(28515)	ANKRD34C-AS1	./.	-/.	11:121951056	15:79162042	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259234	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ST6GALNAC2P1(45541),FUNDC2P2(204422)	C11orf21	./.	-/.	2:84086261	11:2301127	intergenic	exon	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000110665	.	.	upstream	downstream	mismatches(1)	.	.	.
AC079760.1	FP671120.4	-/.	+/.	7:91494892	21:8206534	intron	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000235450	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DDX60L	RFPL4AP7(64492),AC090155.2(79427)	-/.	./.	4:168386216	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000181381	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SELENBP1	ARSB	-/-	-/+	1:151369854	5:78831171	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143416	ENSG00000113273	.	.	upstream	upstream	mismatches(1)	.	.	.
POU6F2(12331),AC011290.1(40220)	POU6F2(12346),AC011290.1(40205)	./.	./.	7:39505426	7:39505441	intergenic	intergenic	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PDGFC	FP671120.4	-/.	+/.	4:156862368	21:8215396	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000145431	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
OR5D14(14699),OR5L1(168)	AC079362.1(33708),AC068993.1(219143)	./.	./.	11:55811199	12:78574383	intergenic	intergenic	translocation	0	0	0	9	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TENM4(123952),AP001978.1(39985)	NOG(13461),C17orf67(182841)	./.	./.	11:79564982	17:56609072	intergenic	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC020584.1(87501),AC096667.1(123207)	XRCC6P2(65224),MAMLD1(63302)	./.	./.	2:184470370	X:150298120	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL589740.1	RPL14P5(31331),CRLF2(146117)	+/.	./.	6:97984484	X:1041432	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000271860	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EXT1(924),SAMD12(76705)	AC025580.2	./.	+/.	8:118112750	15:45462431	intergenic	intron	translocation	0	0	0	16	12	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP001823.1(3434),ELMOD1(754)	./.	./.	3:137274346	11:107590337	intergenic	intergenic	translocation	0	0	0	71	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
FABP6	FP236383.3	+/.	+/.	5:160238121	21:8442054	intron	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000170231	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GNG7(49),DIRAS1(11824)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	19:2702743	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
COMETT	COMETT	-/.	-/.	7:116638062	7:116638077	intron	intron	duplication/ITD	0	0	0	63	0	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(37),low_entropy(9)	.	.	.
AC005562.1	FP236383.3	+/.	+/.	17:30591105	21:8400584	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000214719	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
HNRNPA3P8(76939),AC108740.1(147908)	FP236383.3	./.	+/.	3:80294173	21:8398430	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ERI3	ZNF503-AS1	-/.	+/.	1:44320094	10:75249177	intron	intron	translocation/3'-3'	0	0	0	67	3	low	.	.	.	.	.	ENSG00000117419	ENSG00000226051	.	.	downstream	upstream	mismatches(1)	.	.	.
LNX1	PRKD1	-/.	-/.	4:53490968	14:29782394	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000072201	ENSG00000184304	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
DNTT	AC005357.2	+/.	+/.	10:96333569	19:27961842	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000107447	ENSG00000267623	.	.	downstream	upstream	mismatches(4)	.	.	.
SMYD2	DLG2	+/.	-/.	1:214296548	11:85484196	intron	intron	translocation	0	0	0	14	279	low	.	.	.	.	.	ENSG00000143499	ENSG00000150672	.	.	upstream	upstream	homopolymer(1)	.	.	.
AP003390.1(4367),AP001994.1(77314)	AP003390.1(4378),AP001994.1(77303)	./.	./.	11:119743990	11:119744001	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
YIPF7	SIN3A	-/.	-/.	4:44637774	15:75454386	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000177752	ENSG00000169375	.	.	downstream	downstream	mismatches(1)	.	.	.
HYLS1	RNU4ATAC7P(158506),RPL12P4(56326)	+/+	./-	11:125887842	20:55018318	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198331	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CACNG6	OSCAR	+/.	-/.	19:53993616	19:54096652	intron	intron	deletion/read-through/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000130433	ENSG00000170909	.	.	downstream	upstream	low_entropy(1)	.	.	.
AL136114.1	UBE2W	-/.	-/.	1:177458845	8:73820119	intron	intron	translocation/3'-3'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000227579	ENSG00000104343	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS16(11673),ALG3P1(43746)	MT-RNR2	./.	+/.	5:5331977	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729383	intron	intron	duplication/ITD	0	0	0	41	37	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
RHOQ	FTX	+/.	-/.	2:46542783	X:74076559	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	ENSG00000230590	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
EIF4G2	MTRNR2L8	-/-	-/-	11:10808277	11:10509076	5'UTR/splice-site	5'UTR	deletion/read-through	0	0	0	0	6	low	.	.	|Humanin_family(100%)	.	.	ENSG00000110321	ENSG00000255823	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.6	FP671120.4(3818),FP671120.10(3890)	-/-	./-	21:8210559	21:8231464	exon	intergenic	duplication	0	0	0	16	38	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	downstream	mismatches(1)	.	.	.
EYS	AC013489.2(9288),LINC01586(7716)	-/.	./.	6:64184074	15:88577850	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188107	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
PIP(16965),TAS2R39(26715)	SIN3A	./.	-/.	7:143156704	15:75454388	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000169375	.	.	upstream	downstream	mismatches(1)	.	.	.
PLS1	AL360175.1(7684),AL135908.1(58819)	+/.	./.	3:142644949	6:50528788	intron	intergenic	translocation	0	0	0	7	2	low	.	.	.	.	.	ENSG00000120756	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NALCN-AS1	5_8S_rRNA(1696),FP236383.3(122014)	+/.	./.	13:100887357	21:8258629	intron	intergenic	translocation	0	0	0	2	44	low	.	.	.	.	.	ENSG00000233009	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
NAALADL2	BTAF1	+/.	+/.	3:175349065	10:91950169	intron	intron	translocation/5'-5'	0	0	0	4	14	low	.	.	.	.	.	ENSG00000177694	ENSG00000095564	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01331(79559),ENC1(10871)	AC093627.22	./.	-/.	5:74616535	7:117610	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000287883	.	.	upstream	upstream	mismatches(1)	.	.	.
FKBP15	LINC00871	-/.	+/.	9:113219134	14:46105933	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000119321	ENSG00000258700	.	.	upstream	upstream	mismatches(2)	.	.	.
CMSS1	AC105252.1(292282),AC079380.1(3756)	+/.	./.	3:100176250	4:133867490	exon	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000184220	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01681(36728),HAUS4P1(28137)	KRT18P55	./.	-/.	1:170341086	17:28307146	intergenic	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000265480	.	.	upstream	downstream	mismatches(1)	.	.	.
RGMB	SVIL-AS1	+/.	+/.	5:98771438	10:29447369	intron	intron	translocation/3'-3'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	ENSG00000224597	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PDPN	AC145625.1(53351),TWIST2(4965)	+/.	./.	1:13583778	2:238843067	5'UTR	intergenic	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000162493	.	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479896	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
SYT14	SYT14	+/+	+/+	1:210168091	1:210168065	3'UTR	3'UTR	duplication/ITD	0	0	0	3	3	low	.	.	C2_domain(100%)|	.	.	ENSG00000143469	ENSG00000143469	.	.	downstream	upstream	low_entropy(2)	.	.	.
UNC13C(125173),AC025272.1(298136)	FP236383.3	./.	+/.	15:54758587	21:8444814	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683460	15:81683469	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
ASTN1	AC105252.1(292282),AC079380.1(3756)	-/.	./.	1:176897678	4:133867490	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000152092	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BMP10(48989),GKN3P(862)	ABBA01000935.2	./.	-/.	2:68920386	3:91399945	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000283544	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	3:96617460	21:8214313	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CAST	FP671120.4	+/.	+/.	5:96664239	21:8214787	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000153113	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00506	WNK3	+/.	-/.	3:87130872	X:54212768	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281392	ENSG00000196632	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001599.1	ATP1B4(7531),LAMP2(35368)	+/.	./.	21:26914103	X:120390780	intron	intergenic	translocation	0	0	0	167	0	low	.	.	.	.	.	ENSG00000223563	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP671120.7(1037),5_8S_rRNA(230)	FP236383.3	./.	+/.	21:8256551	21:8397826	intergenic	intron	deletion/read-through	0	0	0	21	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(6)	.	.	.
SPRED2	IRX4	-/.	-/.	2:65359109	5:1882305	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000198369	ENSG00000113430	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC090502.3	EIF3C	+/.	+/.	12:74170989	16:28724081	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258320	ENSG00000184110	.	.	upstream	upstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	AC106886.2	./.	+/.	10:44394833	16:30749075	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
PSME2P2(14118),AL161421.1(189022)	PSME2P2(14131),AL161421.1(189009)	./.	./.	13:48785945	13:48785958	intergenic	intergenic	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC188616.1(35385),AC226118.1(10802)	AC005064.1	./.	+/.	7:368557	7:103513879	intergenic	exon	inversion	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000234715	.	.	upstream	upstream	mismatches(1)	.	.	.
AC013437.1	AC025822.2	-/.	+/.	2:143162905	10:4054538	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000257284	ENSG00000236990	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC090578.1	AC090578.1	+/.	+/.	8:88881403	8:88881453	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000253553	ENSG00000253553	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
BAG6	FP671120.4	-/.	+/.	6:31647292	21:8214781	intron	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	ENSG00000204463	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
ENTPD1-AS1	FP236383.3	-/.	+/.	10:95984176	21:8442660	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000226688	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023347.1(105257),YWHAZP2(108186)	FP236383.3	./.	+/.	2:126449249	21:8433768	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	MT-RNR2	-/.	+/.	3:96617945	MT:2439	5'UTR	exon	translocation/3'-3'	0	0	0	3	.	low	.	.	.	.	.	ENSG00000269028	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	LRRC14	./.	+/.	8:37342743	8:144517989	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000160959	.	.	upstream	upstream	mismatches(1)	.	.	.
BICC1	DIP2A(27616),S100B(973)	+/.	./.	10:58688001	21:46597631	intron	intergenic	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	.	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
SLC2A13	OR7G1(5493),OR7G15P(904)	-/.	./.	12:40105714	19:9121256	CDS	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000151229	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
ZP3	FP236383.3	+/.	+/.	7:76423229	21:8444310	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000188372	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2086),FP236383.3(121624)	CR392039.1(942),CR392039.3(8124)	./.	./.	21:8259019	21:8988372	intergenic	intergenic	inversion	0	0	0	5911	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
AC008691.1	ARL2-SNX15	+/.	+/.	5:159645741	11:65014891	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000273003	.	.	upstream	downstream	mismatches(1)	.	.	.
IL15(110187),INPP4B(178986)	CEMIP2(21729),ABHD17B(24033)	./.	./.	4:141844174	9:71838419	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
AC096588.1	FP236383.3	-/.	+/.	4:59626866	21:8442659	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000249392	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL627316.1	LINC02235	-/.	+/.	1:90392802	8:81842457	intron	intron	translocation	0	0	0	312	67	low	.	.	.	.	.	ENSG00000287372	ENSG00000254689	.	.	upstream	upstream	mismatches	.	.	.
G6PC2	KCNH8	+/.	+/.	2:168903615	3:19308652	intron	intron	translocation/3'-3'	0	0	0	1	119	low	.	.	.	.	.	ENSG00000152254	ENSG00000183960	.	.	upstream	upstream	mismatches(1)	.	.	.
AC245297.1	AC245297.1	-/.	-/.	1:149319385	1:149319443	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000215861	ENSG00000215861	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
TMPO-AS1	FP671120.4	-/.	+/.	12:98516166	21:8215508	exon	intron	translocation/3'-3'	0	0	0	9	2	low	.	.	.	.	.	ENSG00000257167	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
OXR1	HYDIN	+/.	-/.	8:106534226	16:71158143	intron	intron	translocation/3'-3'	0	0	0	0	54	low	.	.	.	.	.	ENSG00000164830	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL139383.1	FP236383.3	-/.	+/.	13:33517096	21:8397433	intron	intron	translocation/3'-3'	0	0	0	2	543	low	.	.	.	.	.	ENSG00000230490	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	C2CD2	./.	-/.	5:23949377	21:41897296	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000157617	.	.	downstream	downstream	homopolymer(1)	.	.	.
ZNF114	LINC02702(66121),BUD13(23754)	+/+	./-	19:48468783	11:116724416	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	KRAB_box(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000178150	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF114	AC099565.1(22565),SMIM12(4440)	+/+	./+	19:48468784	1:34708297	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	KRAB_box(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000178150	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NRIP3	BCL11B	-/-	-/-	11:9003964	14:99226536	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Zinc_finger__C2H2_type(100%)	.	.	ENSG00000175352	ENSG00000127152	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	CR392039.1(942),CR392039.3(8124)	+/.	./.	21:8397824	21:8988372	intron	intergenic	inversion	0	0	0	1126	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	UHRF1	./.	+/.	8:17155256	19:4910339	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000276043	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4497),AP001994.1(77184)	FRMD5(93118),GOLM2(330)	./.	./.	11:119744120	15:44288389	intergenic	intergenic	translocation	0	0	0	3583	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
NOTCH2(12177),RNU6-465P(14018)	AC092275.1	./.	+/.	1:120112956	16:85260115	intergenic	intron	translocation	0	0	0	4	19	low	.	.	.	.	.	.	ENSG00000287787	.	.	downstream	upstream	mismatches(1)	.	.	.
LOXL3	AC006288.1(198),LINC01613(410730)	-/.	./.	2:74532907	9:119524323	3'UTR	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000115318	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IQCH	FP236383.3	+/.	+/.	15:67310424	21:8389581	intron	intron	translocation/3'-3'	0	0	0	40	0	low	.	.	.	.	.	ENSG00000103599	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LHFPL2	FP671120.4	-/.	+/.	5:78676319	21:8211456	intron	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	ENSG00000145685	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
IQCH-AS1	FP236383.3	-/.	+/.	15:67310424	21:8389581	intron	intron	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000259673	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214788	21:8397849	intron	intron	duplication	0	0	0	5263	6042	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003973.3	AP001599.1	+/.	+/.	11:111099121	21:26914103	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000287028	ENSG00000223563	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
RBFOX1	BEAN1	+/.	+/.	16:6222319	16:66427487	intron	intron	inversion/3'-3'	0	0	0	22	0	low	.	.	.	.	.	ENSG00000078328	ENSG00000166546	.	.	upstream	upstream	mismatches(1)	.	.	.
MYO7B	VENTXP2(75461),AL590681.1(12931)	+/.	./.	2:127565913	13:83983242	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000169994	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MMADHC-DT(7983),AC016682.1(95203)	MMADHC-DT(8029),AC016682.1(95157)	./.	./.	2:150055430	2:150055476	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
PRKCH	FP236383.3	+/.	+/.	14:61526875	21:8397829	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000027075	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PLXNA4	PLXNA4	-/.	-/.	7:132189010	7:132189019	intron	intron	duplication/ITD	0	0	0	468	256	low	.	.	.	.	.	ENSG00000221866	ENSG00000221866	.	.	upstream	downstream	low_entropy(1)	.	.	.
NR4A2(37905),GPD2(55037)	DDB2	./.	+/.	2:156380253	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
PCYT1A	AP000432.1(41803),AP000432.2(3221)	-/.	./.	3:196214977	21:17702187	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000161217	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DUSP16	FP236383.3	-/.	+/.	12:12553672	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000111266	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022709.1(43512),AC021393.1(109301)	LYSMD2	./.	-/.	8:59937454	15:51748671	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000140280	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
NDEL1	CDH4	+/.	+/.	17:8463508	20:61708669	intron	intron	translocation/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000166579	ENSG00000179242	.	.	downstream	downstream	mismatches(1)	.	.	.
NEK6	FP236383.3	+/.	+/.	9:124343201	21:8442045	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000119408	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
LINC02008(128480),CYP51A1P1(214360)	SMIM35	./.	-/.	3:82592155	11:118065485	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255274	.	.	downstream	upstream	mismatches(1)	.	.	.
AC122683.1(65968),HMGN2P24(27671)	FP671120.4	./.	+/.	3:40671395	21:8217546	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RAMP1	AC025580.2	+/.	+/.	2:237908439	15:45463198	intron	intron	translocation/5'-5'	0	0	0	24	37	low	.	.	.	.	.	ENSG00000132329	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TARBP1	AC084337.2	-/.	+/.	1:234397805	11:6496218	intron	intron	translocation/3'-3'	0	0	0	0	101	low	.	.	.	.	.	ENSG00000059588	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
RNU7-55P	FP236383.3	-/-	+/+	8:9072505	21:8397834	exon	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000239078	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
RN7SKP247(8102),ADGRL2(45949)	AL162726.3(128507),RASEF(70889)	./.	./.	1:81260198	9:82908701	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	2:237784949	15:45463197	intron	intron	translocation	0	0	0	67	37	low	.	.	.	.	.	ENSG00000124831	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	AP001021.3	./.	+/.	2:218108703	18:5979009	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000266846	.	.	downstream	upstream	homopolymer(1)	.	.	.
RN7SL104P(43680),AC010145.1(2388)	AC012501.2(18059),DNAJA1P2(150103)	./.	./.	2:15994661	2:153611347	intergenic	intergenic	deletion	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
Metazoa_SRP(49193),PAX2(19401)	FP671120.7(393),5_8S_rRNA(874)	./.	./.	10:100716202	21:8255907	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
RUFY4(18121),CXCR2(16587)	BX284632.1(7531),BMS1P13(3117)	./.	./.	2:218108702	9:65825003	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
GAPDHP36(72025),RALBP1P1(37974)	DLG2	./.	-/.	3:180285133	11:85484188	intergenic	intron	translocation	0	0	0	2	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
AL009177.1(22457),AL109914.1(72356)	AL133500.1	./.	-/.	6:14525158	X:72350912	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000285547	.	.	upstream	downstream	mismatches(1)	.	.	.
TDRD6	PSD3	+/+	-/-	6:46692374	8:18536315	CDS	intron	translocation	0	0	0	0	1	low	.	.	Tudor_domain(84%)|	.	.	ENSG00000180113	ENSG00000156011	.	.	downstream	downstream	mismatches(1)	.	.	.
TPCN1	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	12:113295637	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000186815	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC008268.1(53436),GPAT2P1(67491)	5_8S_rRNA(2097),FP236383.3(121613)	./.	./.	2:95722163	21:8259030	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
KLF3-AS1	MID1	-/.	-/.	4:38623112	X:10619145	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000231160	ENSG00000101871	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.3(3892),FP671120.7(551)	5_8S_rRNA(2086),FP236383.3(121624)	./.	./.	21:8254041	21:8259019	intergenic	intergenic	inversion	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
RPL10L(115581),MDGA2(72267)	AC025627.3	./.	+/.	14:46767362	17:19601314	intergenic	exon	translocation	0	0	0	5	23	low	.	.	.	.	.	.	ENSG00000266179	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
MTF1(293),INPP5B(812),AL929472.2(812)	KLF3-AS1	./.	-/.	1:37859885	4:38623112	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000231160	.	.	upstream	upstream	mismatches(1)	.	.	.
SSBP4	LINC00558(153239),LINC00458(22584)	+/+	./-	19:18433847	13:54093199	CDS	intergenic	translocation	0	0	0	1	0	low	.	.	Single-stranded_DNA_binding_protein__SSDP(100%)|	.	.	ENSG00000130511	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ACOXL	BACH1	+/.	+/.	2:110884840	21:29263475	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000153093	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
CAMK1D	FP236383.3	+/.	+/.	10:12746140	21:8443896	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000183049	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SCFD2	PLA2G3	-/.	-/.	4:52953150	22:31138371	intron	CDS	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000184178	ENSG00000100078	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
RAC1	SULF2	+/.	-/.	7:6375173	20:47757536	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000136238	ENSG00000196562	.	.	upstream	upstream	mismatches(1)	.	.	.
SOCS2-AS1	AC091182.1(10752),AC091182.2(62696)	-/-	./+	12:93571302	8:37342743	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000246985	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	AC011498.1	-/-	-/+	11:9003964	19:4461811	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000267011	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS10	AC106886.2	-/.	+/.	6:34421330	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000124614	ENSG00000260899	.	.	upstream	downstream	mismatches(1)	.	.	.
CDC7	LINC01120	+/+	+/+	1:91511821	2:131405049	CDS/splice-site	intron	translocation	0	0	0	0	0	low	.	.	Protein_kinase_domain(39%)|	.	.	ENSG00000097046	ENSG00000223631	.	.	downstream	upstream	mismatches(1)	.	.	.
TSPOAP1-AS1	5_8S_rRNA(619),FP236383.3(123091)	+/.	./.	17:58385559	21:8257552	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SEMA5B(2020),PDIA5(36400)	SEMA5B(2033),PDIA5(36387)	./.	./.	3:123030625	3:123030638	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),low_entropy(1),merge_adjacent	.	.	.
SLCO5A1	AL049792.1(9699),RAP2C(61973)	-/.	./.	8:69690369	X:132141051	intron	intergenic	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	.	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(10864),GBX2(1200)	SULF2	./.	-/.	2:236164036	20:47757536	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000196562	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02225(171108),LINC02101(37361)	LINC01607	./.	+/.	5:58070270	8:79785746	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000272138	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL391832.4	AL162417.1	-/.	-/.	1:234906873	9:133148049	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286263	ENSG00000285245	.	.	upstream	upstream	mismatches(1)	.	.	.
JADE3	FAM156B(3178),AC234031.1(14218)	+/.	./.	X:47020461	X:52911738	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000102221	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLCO5A1	CCDC178	-/.	-/.	8:69690374	18:32975568	intron	intron	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	ENSG00000166960	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP19-SLIT1	ERN2	-/.	-/.	10:97179803	16:23702061	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000269891	ENSG00000134398	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPL14P5(160738),CRLF2(16710)	XRCC6P2(65223),MAMLD1(63303)	./.	./.	X:1170839	X:150298119	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC28A1	CDH8	+/.	-/.	15:84908598	16:61831042	intron	intron	translocation	0	0	0	0	57	low	.	.	.	.	.	ENSG00000156222	ENSG00000150394	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683458	15:81683469	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
ICE1(197015),AC026736.1(1570)	DST-AS1	./.	+/.	5:5687235	6:56861333	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000231441	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP671120.3(3892),FP671120.7(551)	+/.	./.	21:8214790	21:8254041	intron	intergenic	inversion	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
SEMA3A	XRCC6P2(65223),MAMLD1(63303)	-/.	./.	7:84014436	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075213	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SPAG16	AL031772.1	+/.	-/.	2:213290005	6:139184415	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144451	ENSG00000231329	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU6-1059P(140592),RNU6-34P(142941)	LINC02098(161794),ETS1(55526)	./.	./.	4:96009356	11:128403235	intergenic	intergenic	translocation	0	0	0	27	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
TMC4	EEF2K	-/-	+/-	19:54168416	16:22279034	exon	intron	translocation/5'-5'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000167608	ENSG00000103319	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093746.1(52365),LINC02616(36068)	AL451061.1(81467),PLEKHG1(8116)	./.	./.	4:36965704	6:150591767	intergenic	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC083967.1(22202),LINC01592(5174)	FP671120.4	./.	+/.	8:68874965	21:8214397	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
STAC	DHFR	+/.	-/.	3:36520329	5:80651216	intron	intron	translocation	0	0	0	0	128	low	.	.	.	.	.	ENSG00000144681	ENSG00000228716	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
LINC02235	LY6E(14720),C8orf31(657)	+/.	./.	8:81842457	8:143038552	intron	intergenic	duplication	0	0	0	67	173	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
AC009522.1	XRCC6P2(65223),MAMLD1(63303)	+/.	./.	12:89828429	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258216	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS7P1	XRCC6P2(65218),MAMLD1(63308)	+/.	./.	15:82302537	X:150298114	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000274376	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.3(291),FP671120.7(4152)	FP236383.3	./.	+/.	21:8250440	21:8397826	intergenic	intron	deletion/read-through	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(10),mismatches(6)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117366	10:113117451	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PPEF1	XRCC6P2(65223),MAMLD1(63303)	+/.	./.	X:18819316	X:150298119	intron	intergenic	duplication	0	0	0	1	0	low	.	.	.	.	.	ENSG00000086717	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SEC14L5	FP671120.4	+/+	+/+	16:5011163	21:8214783	CDS	intron	translocation	0	0	0	4	5263	low	.	.	CRAL/TRIO__N-terminal_domain(100%),CRAL/TRIO_domain(100%),PRELI-like_family(100%)|	.	.	ENSG00000103184	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
SMYD3	RNF43	-/.	-/.	1:246006332	17:58385558	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000185420	ENSG00000108375	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DPY19L2P3	AL133500.1	+/.	-/.	7:29663817	X:72350912	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000227855	ENSG00000285547	.	.	downstream	downstream	mismatches(1)	.	.	.
HBB	LIN52(32938),VSX2(5276)	-/.	./.	11:5225536	14:74234173	3'UTR	intergenic	translocation	0	0	0	91	36	low	.	.	.	.	.	ENSG00000244734	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	AC116337.3	./.	-/.	4:186749803	5:75020585	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000249856	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02842	ABCA10	+/.	-/.	8:61821972	17:69221022	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000254119	ENSG00000154263	.	.	downstream	downstream	mismatches(1)	.	.	.
STK10	CENPJ	-/.	-/.	5:172090368	13:24895769	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000072786	ENSG00000151849	.	.	downstream	upstream	mismatches(1)	.	.	.
AC068286.2	BEGAIN	-/.	-/.	2:14919275	14:100552182	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000287291	ENSG00000183092	.	.	downstream	downstream	mismatches(1)	.	.	.
PDS5A	AC091691.3(4145),AC091691.2(3107)	-/.	./.	4:39875783	18:71212511	intron	intergenic	translocation	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC007402.1	FP671120.4	+/.	+/.	2:51832936	21:8214882	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231918	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF804A	XRCC6P2(65223),MAMLD1(63303)	+/.	./.	2:184674832	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000170396	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HIVEP2	AP001599.1	-/.	+/.	6:142946392	21:26914103	intron	intron	translocation	0	0	0	63	167	low	.	.	.	.	.	ENSG00000010818	ENSG00000223563	.	.	downstream	downstream	duplicates(4),mismatches(2)	.	.	.
LINC00486	FRMD5(93317),GOLM2(131)	+/.	./.	2:32916256	15:44288588	intron	intergenic	translocation	0	0	0	90	3	low	.	.	.	.	.	ENSG00000230876	.	.	.	upstream	downstream	mismatches	.	.	.
AC006504.5	BPY2	+/.	+/.	19:27961838	Y:22991791	intron	intron	translocation/3'-3'	0	0	0	4	5	low	.	.	.	.	.	ENSG00000267575	ENSG00000183753	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ALPK3	ALPK3	+/.	+/.	15:84847202	15:84847249	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000136383	ENSG00000136383	.	.	upstream	downstream	low_entropy(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	5:103482858	15:45462585	intron	intron	translocation/5'-5'	0	0	0	67	23	low	.	.	.	.	.	ENSG00000226926	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
NALCN-AS1	IQCH-AS1	+/.	-/.	13:100887371	15:67310424	intron	intron	translocation/5'-5'	0	0	0	2	40	low	.	.	.	.	.	ENSG00000233009	ENSG00000259673	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL356157.3(30449),AL356157.1(45338)	FP236383.3	./.	+/.	10:44545870	21:8444134	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC004687.2	UNC13A	-/.	-/.	17:58385558	19:17686852	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000285897	ENSG00000130477	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	9:106864053	9:106864062	intron	intron	duplication/ITD	0	0	0	38	38	low	.	.	.	.	.	ENSG00000148143	ENSG00000148143	.	.	upstream	downstream	low_entropy(1)	.	.	.
SNX16	AP003390.1(4506),AP001994.1(77175)	-/.	./.	8:81842439	11:119744129	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
FP671120.4	5_8S_rRNA(2087),FP236383.3(121623)	+/.	./.	21:8218866	21:8259020	intron	intergenic	inversion	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNQ4	AC091182.1(10752),AC091182.2(62696)	+/.	./.	1:40831128	8:37342743	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117013	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CACNA1D	XRCC6P2(65223),MAMLD1(63303)	+/.	./.	3:53651281	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157388	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CASC15	IQCH-AS1	+/.	-/.	6:22487717	15:67310422	intron	intron	translocation/5'-5'	0	0	0	0	40	low	.	.	.	.	.	ENSG00000272168	ENSG00000259673	.	.	downstream	upstream	mismatches(1)	.	.	.
SAMD12	ARL2-SNX15	-/.	+/.	8:118554925	11:65014891	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	ENSG00000273003	.	.	downstream	downstream	mismatches(1)	.	.	.
RHBDD1	LINC02062(416288),AC114324.2(78258)	+/.	./.	2:226969293	5:99411301	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000144468	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TGFBI	CACUL1(11329),AL157388.1(17985)	+/.	./.	5:136044142	10:118766578	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120708	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC116611.1(217819),MAPRE1P2(47604)	XRCC6P2(65225),MAMLD1(63301)	./.	./.	4:32963344	X:150298121	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC114477.1(10760),RANP7(81328)	CT867976.1(151071),AC138776.1(196809)	./.	./.	3:22822807	22:11630714	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OR4A44P(111592),AC027369.6(140026)	FP236383.3	./.	+/.	11:48740085	21:8397818	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DACT2(25893),AL138918.1(29027)	MRPS36P5(24795),LINC02461(76134)	./.	./.	6:168345670	12:43079181	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01381(6973),DNMT3A(11680)	FP671120.4	./.	+/.	2:25216175	21:8214792	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GTF2IRD1P1	AC023632.3(700),AC023632.4(3452)	-/.	./.	7:66824572	8:94590959	intron	intergenic	translocation	0	0	0	8	22	low	.	.	.	.	.	ENSG00000230583	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DUSP22	GDI2	+/.	-/.	6:334170	10:5812961	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000112679	ENSG00000057608	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	PPP2R3B	./.	-/.	3:103984260	X:370878	intergenic	intron	translocation	0	0	0	83	0	low	.	.	.	.	.	.	ENSG00000167393	.	.	upstream	downstream	mismatches(1)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	UBE2Q2L	./.	+/.	5:36444163	15:84186376	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259511	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SLC45A4(8629),AC011676.4(9196)	FP671120.4	./.	+/.	8:141316934	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PHLDB1	MT-RNR2	+/.	+/.	11:118652951	MT:2230	exon	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000019144	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ASTN1	FP236383.3	-/.	+/.	1:176897681	21:8397821	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000152092	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC23A2	5_8S_rRNA(2693),FP236383.3(121017)	-/.	./.	20:4945995	21:8259626	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000089057	.	.	.	upstream	upstream	duplicates(1),mismatches(3)	.	.	.
RCL1(18584),HNRNPA1P41(40169)	MT-RNR2	./.	+/.	9:4904501	MT:1698	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PLPP1(3517),AK4P2(13399)	AL606923.2	./.	-/.	5:55538486	6:68449194	intergenic	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	.	ENSG00000288088	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
RNU6-393P(16786),TMEM130(34878)	AC025580.2	./.	+/.	7:98811610	15:45463026	intergenic	intron	translocation	0	0	0	1	71	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	mismatches	.	.	.
AC093725.2(49325),AC093725.1(11910)	AC015687.1	./.	+/.	4:57708125	8:71045533	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000285579	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15023),LRCH1(22187)	./.	./.	13:46530929	13:46530981	intergenic	intergenic	duplication/ITD	0	0	0	45	44	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479809	10:104479908	intron	intron	duplication/ITD	0	0	0	2200	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	duplicates(1),low_entropy(12)	.	.	.
AL035415.1(67836),AC099796.2(25721)	AL353595.1	./.	+/.	1:54488696	9:11645401	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285784	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC00923	LINC00923	-/.	-/.	15:97803487	15:97803500	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000251209	ENSG00000251209	.	.	upstream	downstream	duplicates(1),low_entropy(7)	.	.	.
CCNB2	MT-RNR2	+/.	+/.	15:59122737	MT:2714	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000157456	ENSG00000210082	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
BX470209.2	FP671120.4	-/.	+/.	9:89797938	21:8211443	exon	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000236507	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ADGRG7	DLG2	+/.	-/.	3:100673210	11:85484190	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000144820	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
CLASP1	CKAP5	-/.	-/.	2:121357462	11:46754528	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000074054	ENSG00000175216	.	.	downstream	upstream	mismatches(1)	.	.	.
NR4A1	ASB15	+/+	+/+	12:52058700	7:123596027	CDS	intron	translocation	0	0	0	0	0	low	.	.	Ligand-binding_domain_of_nuclear_hormone_receptor(66%),Zinc_finger__C4_type_(two_domains)(100%)|Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),SOCS_box(100%)	.	.	ENSG00000123358	ENSG00000146809	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL035401.1	5_8S_rRNA(2082),FP236383.3(121628)	-/.	./.	6:22948035	21:8259015	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000233358	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02822	SLC12A1	+/.	+/.	12:90669265	15:48231143	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286021	ENSG00000074803	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650918	21:8397434	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	DUX4L13(1775),DUX4L14(268)	./.	./.	3:73205777	10:133756291	intergenic	intergenic	translocation	0	0	0	15	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
DACT2(25892),AL138918.1(29028)	TRAPPC9	./.	-/.	6:168345669	8:140089241	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000167632	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01205	LINC01893	+/.	+/.	3:109700822	18:76211221	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000264260	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L8	FP236383.3	-/.	+/.	11:10508413	21:8397351	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000255823	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.4	CDH12	-/-	-/+	21:8393624	5:22323469	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280614	ENSG00000154162	.	.	upstream	upstream	mismatches(1)	.	.	.
AL390957.1	LINC02745	-/.	-/.	1:192312827	11:42029389	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000285280	ENSG00000255300	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479904	X:133661638	intron	intron	translocation/3'-3'	0	0	0	1761	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
OR4A44P(111592),AC027369.6(140026)	FP671120.4	./.	+/.	11:48740085	21:8214784	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IKZF1(6399),RNU6-1091P(23880)	CASC19	./.	-/.	7:50411500	8:127115208	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000254166	.	.	upstream	upstream	mismatches(1)	.	.	.
GRM1	FP236383.3	+/.	+/.	6:146255322	21:8441655	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000152822	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SHKBP1	AP001858.1(1346),TUBAP7(12336)	+/+	./+	19:40582399	11:63034449	CDS	intergenic	translocation	0	0	0	1	0	low	.	.	BTB/POZ_domain(100%)|	.	.	ENSG00000160410	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HMCN1	LINC02261(122977),IGBP1P5(179943)	+/.	./.	1:186010335	4:27405202	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000143341	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02745	FP236383.3	-/.	+/.	11:42029388	21:8401256	intron	intron	translocation	0	0	0	9	15	low	.	.	.	.	.	ENSG00000255300	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009161.1(206454),AC009110.1(32172)	FP236383.3	./.	+/.	16:62564200	21:8441654	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.6	CDH12	-/-	-/+	21:8210589	5:22323469	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280800	ENSG00000154162	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC23A1	FP236383.3	-/.	+/.	5:139376762	21:8442047	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000170482	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
PARD3B(44228),NRP2(17600)	PARD3B(44252),NRP2(17576)	./.	./.	2:205664390	2:205664414	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683461	15:81683470	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
MIR4300HG	NGB	-/.	-/.	11:82143175	14:77269807	intron	intron	translocation/3'-3'	0	0	0	1095	32	low	.	.	.	.	.	ENSG00000245832	ENSG00000165553	.	.	downstream	downstream	mismatches	.	.	.
AC109466.1	HMGB3P23(424799),RNA5SP281(223599)	+/.	./.	5:164459984	9:32069959	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000241956	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.10(126826),RPSAP68(8090)	+/.	./.	21:8211701	21:8595457	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	AC044860.1	./.	-/.	5:36444163	15:85190990	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000229212	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
PTPRN2(221),LINC01022(2585)	BANF2(94731),AL035045.1(56761)	./.	./.	7:158588044	20:17830602	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093765.2	5_8S_rRNA(2087),FP236383.3(121623)	+/.	./.	4:116876481	21:8259020	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000286637	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SH3PXD2B	LINC01841(5043),ADGRE5(5262)	-/.	./.	5:172340336	19:14375239	intron	intergenic	translocation	0	0	0	4	8	low	.	.	.	.	.	ENSG00000174705	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SIL1	AC008691.1	-/.	+/.	5:139105649	5:159645741	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120725	ENSG00000249738	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
FNDC3B	THRAP3P2(6690),SLCO3A1(103063)	+/.	./.	3:172359003	15:91750645	intron	intergenic	translocation	0	0	0	128	21	low	.	.	.	.	.	ENSG00000075420	.	.	.	downstream	upstream	mismatches	.	.	.
RN7SL104P(43680),AC010145.1(2388)	LINC00682	./.	-/.	2:15994661	4:41881849	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000245870	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
MUC3A	FP236383.5	+/+	-/-	7:100963209	21:8438601	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000169894	ENSG00000281181	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02143	HMGB3P23(424799),RNA5SP281(223599)	-/.	./.	5:164459984	9:32069959	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000253236	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CAMK1D	5_8S_rRNA(3923),FP236383.3(119787)	+/.	./.	10:12746140	21:8260856	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000183049	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BX470209.2	FP671120.7(134),5_8S_rRNA(1133)	-/.	./.	9:89797938	21:8255648	exon	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000236507	.	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	AC093878.1(35588),AC097535.2(126280)	./.	./.	2:128443843	4:33274258	intergenic	intergenic	translocation	0	0	0	7	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HBB	DNMT3L	-/.	-/.	11:5225537	21:44250996	3'UTR	intron	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000142182	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC25A29	APBA2	-/.	+/.	14:100299886	15:29078680	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197119	ENSG00000034053	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	MGAT3	./.	+/.	4:186749803	22:39479098	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000128268	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092598.1(126810),COL3A1(8118)	AFAP1	./.	-/.	2:188966255	4:7841621	intergenic	intron	translocation	0	0	0	5	4	low	.	.	.	.	.	.	ENSG00000196526	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
AC084759.3	U3(104497),GPC1(41723)	+/+	./+	15:53910829	2:240393940	exon	intergenic	translocation	0	0	0	7	357	low	.	.	.	.	.	ENSG00000280362	.	.	.	downstream	upstream	duplicates(11),mismatches(16)	.	.	.
RNU1-154P(22784),AC239860.3(5321)	FP236383.3	./.	+/.	1:145454477	21:8397822	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PEAK1	MT-RNR2	-/.	+/.	15:77383525	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000173517	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
MTRNR2L12	DLG2	-/.	-/.	3:96618115	11:85484197	5'UTR	intron	translocation	0	0	0	75	279	low	.	.	.	.	.	ENSG00000269028	ENSG00000150672	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
FKBP14-AS1	AC005225.2(1331),DNAL1(9603)	+/.	./.	7:29989908	14:73635272	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000227014	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MLYCD	FP236383.3	+/+	+/+	16:83922178	21:8442059	3'UTR	intron	translocation	0	0	0	0	5962	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
KRT8P18(38619),RNU6-243P(1072)	AC006486.3	./.	-/.	3:35255768	19:42217199	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000288671	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
CCDC6	OR4A6P(481291),TRIM48(55048)	-/.	./.	10:59900211	11:55207107	intron	intergenic	translocation	0	0	0	13	0	low	.	.	.	.	.	ENSG00000108091	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC006974.2	MT-RNR2	-/.	+/.	7:148567849	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000283648	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
FP236383.3	TUSC2P2(120150),DLGAP5P2(150249)	+/.	./.	21:8444814	X:92892241	intron	intergenic	translocation	0	0	0	62	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC018697.1	MT-RNR2	+/.	+/.	18:24849896	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000266573	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00707	5_8S_rRNA(1979),FP236383.3(121731)	+/.	./.	10:6788934	21:8258912	intron	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000238266	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LRRC4C	-/.	-/.	10:104479906	11:41021153	intron	intron	translocation	0	0	0	1761	632	low	.	.	.	.	.	ENSG00000225768	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96618115	21:8400370	5'UTR	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL161449.2	5_8S_rRNA(2079),FP236383.3(121631)	-/.	./.	9:13024587	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000285637	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC022743.1(484045),AC083760.1(55590)	FP671120.4	./.	+/.	18:43983881	21:8217546	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC30A6	MT-RNR2	+/.	+/.	2:32179891	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152683	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02240	MT-RNR2	+/.	+/.	5:124862842	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000260192	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RNU6ATAC8P(17934),HSPE1P14(12507)	MT-RNR2	./.	+/.	8:102439256	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL645608.6	SPNS2	+/.	+/.	1:905264	17:4532112	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272438	ENSG00000183018	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CSMD2	FP671120.4	-/.	+/.	1:33894234	21:8214800	intron	intron	translocation/3'-3'	0	0	0	2	5263	low	.	.	.	.	.	ENSG00000121904	ENSG00000278996	.	.	downstream	upstream	duplicates(3),homopolymer(3)	.	.	.
GPR39	TATDN2	+/.	+/.	2:132557874	3:10249513	intron	CDS	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000157014	.	.	downstream	upstream	mismatches(2)	.	.	.
AMZ1	RPL6P21(23500),DGKB(50169)	+/.	./.	7:2708376	7:14094880	intron	intergenic	deletion	0	0	0	0	7	low	.	.	.	.	.	ENSG00000174945	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RHOQ	SPIDR	+/.	+/.	2:46542783	8:47318602	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	ENSG00000164808	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SCN11A	MT-RNR2	-/.	+/.	3:38993927	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000168356	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PPP2CA	PRKCA	-/.	+/.	5:134225648	17:66712001	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000113575	ENSG00000154229	.	.	upstream	upstream	mismatches(1)	.	.	.
BRINP3	RGMB-AS1	-/.	-/.	1:190147967	5:98771438	intron	intron	translocation/5'-5'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000162670	ENSG00000246763	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GAPDHP75(532267),RNA5SP73(590)	AP005059.1	./.	+/.	1:189665559	18:5568113	intergenic	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	.	ENSG00000264000	.	.	upstream	downstream	mismatches(1)	.	.	.
FAM156B(3179),AC234031.1(14217)	MT-RNR2	./.	+/.	X:52911739	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CDH13	MT-RNR2	+/.	+/.	16:83240632	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000140945	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	6:93664689	6:93664788	intron	intron	duplication/ITD	0	0	0	22	15	low	.	.	.	.	.	ENSG00000287683	ENSG00000287683	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC025627.3	ATP7BP1(104862),RPS4XP18(62309)	+/.	./.	17:19601313	18:22524156	exon	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000266179	.	.	.	upstream	downstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262507	intergenic	intron	translocation	0	0	0	25	2239	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
DHFR	AC078923.1	-/.	-/.	5:80651216	12:75861953	intron	intron	translocation/3'-3'	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000258077	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
FP236383.3	CT867976.1(150114),AC138776.1(197766)	+/.	./.	21:8442044	22:11629757	intron	intergenic	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LSP1	FP236383.3	+/.	+/.	11:1851888	21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000130592	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001599.1	ATP1B4	+/.	+/.	21:26914103	X:120373889	intron	intron	translocation	0	0	0	167	0	low	.	.	.	.	.	ENSG00000223563	ENSG00000101892	.	.	downstream	upstream	duplicates(7),mismatches(2)	.	.	.
RNU7-88P(31659),DIAPH3(153792)	ATP5F1CP1(175789),CDKN3(229065)	./.	./.	13:59511791	14:54167784	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4389),AP001994.1(77292)	AP003390.1(4488),AP001994.1(77193)	./.	./.	11:119744012	11:119744111	intergenic	intergenic	duplication/ITD	0	0	0	3458	3583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01717(231084),LINC01774(5084)	SLC36A4	./.	-/.	1:208967370	11:93184706	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000180773	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ALOX15(16236),PELP1(11244)	BX546450.1(36086),PASD1(11344)	./.	./.	17:4658530	X:151552331	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
C7orf33	TCEA1	+/.	-/.	7:148605538	8:54016164	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000170279	ENSG00000187735	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02612	AC087269.2(3513),AC087269.1(644)	+/.	./.	2:150617538	8:8723049	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPSAP40(64259),UST(34174)	TMEM184A	./.	-/.	6:148712856	7:1547185	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000164855	.	.	upstream	downstream	mismatches(1)	.	.	.
AL138889.1(33124),MIR1275(39217)	AC022826.2	./.	-/.	6:33960755	8:73820101	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258677	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02609	AP000445.2(7167),TMA16P1(28017)	-/.	./.	1:90839730	11:58768220	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000233593	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SDK1	ABHD17B	+/.	-/.	7:3678607	9:71904276	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146555	ENSG00000107362	.	.	upstream	upstream	mismatches(1)	.	.	.
BAIAP3	FP236383.3	+/.	+/.	16:1334643	21:8397818	5'UTR	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000007516	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01762	FP671120.4	-/.	+/.	1:116474957	21:8214800	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000233154	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
5_8S_rRNA(2086),FP236383.3(121624)	FP236383.3	./.	+/.	21:8259019	21:8437076	intergenic	intron	inversion	0	0	0	5911	55	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8392868	21:8442053	intron	intron	inversion/3'-3'	0	0	0	43	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AC107421.1(32368),DIPK2A(83313)	PLAGL1(20798),SF3B5(9487)	./.	./.	3:143888510	6:144085397	intergenic	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
METTL15	METTL15	+/.	+/.	11:28310915	11:28310964	intron	intron	duplication/ITD	0	0	0	167	167	low	.	.	.	.	.	ENSG00000169519	ENSG00000169519	.	.	upstream	downstream	duplicates(19),low_entropy(1)	.	.	.
CCSER1	NRSN2-AS1	+/.	-/.	4:90819168	20:346725	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184305	ENSG00000225377	.	.	downstream	upstream	mismatches(1)	.	.	.
NOC2LP2(16145),RHOQP2(267)	SPIDR	./.	+/.	2:131460732	8:47301950	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000164808	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SKAP1	ATP9B(2396),NFATC1(15173)	-/.	./.	17:48210865	18:79380683	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141293	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257420	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
VCAN	AC004972.1(70090),AC005008.2(130694)	+/.	./.	5:83474557	7:81044814	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000038427	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
EPHA3	PRANCR	+/.	-/.	3:89393759	12:70178568	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000044524	ENSG00000257815	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683458	15:81683469	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(899),IGHV4-39(2513)	./.	./.	14:106419121	14:106419198	intergenic	intergenic	duplication/ITD	0	0	0	192	192	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC01060	C10orf143	+/.	-/.	4:188533877	10:130103977	intron	intron	translocation/5'-5'	0	0	0	0	49	low	.	.	.	.	.	ENSG00000249378	ENSG00000237489	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
AP003390.1(4499),AP001994.1(77182)	FXNP1(22669),NRXN3(87426)	./.	./.	11:119744122	14:78082947	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
CAMK1G	SLC1A2	+/.	-/.	1:209590483	11:35290493	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000008118	ENSG00000110436	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	LINC01500	./.	+/.	2:240393940	14:59014165	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000258583	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	CR392039.1(944),CR392039.3(8122)	+/.	./.	21:8442053	21:8988374	intron	intergenic	inversion	0	0	0	5962	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AL009178.2	FMN1	+/+	-/+	6:167796658	15:32839930	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000269155	ENSG00000248905	.	.	downstream	upstream	mismatches(1)	.	.	.
AC097459.1	EMCN	+/.	-/.	4:100459179	4:100459188	intron	intron	duplication/3'-3'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000286150	ENSG00000164035	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FP671120.3(3894),FP671120.7(549)	5_8S_rRNA(2085),FP236383.3(121625)	./.	./.	21:8254043	21:8259018	intergenic	intergenic	inversion	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
NCAN	FP236383.3	+/.	+/.	19:19212390	21:8442060	intron	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	ENSG00000130287	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AL033529.1	DMXL2	+/.	-/.	1:32507193	15:51589731	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	ENSG00000104093	.	.	downstream	upstream	mismatches(1)	.	.	.
RNA5SP427(5143),AC007342.2(19305)	FP236383.3	./.	+/.	16:53342714	21:8397815	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
FNDC3B	THRAP3P2(6690),SLCO3A1(103063)	+/.	./.	3:172359012	15:91750645	intron	intergenic	translocation	0	0	0	128	21	low	.	.	.	.	.	ENSG00000075420	.	.	.	downstream	upstream	mismatches	.	.	.
AC091078.1	5_8S_rRNA(2077),FP236383.3(121633)	+/.	./.	15:93232876	21:8259010	intron	intergenic	translocation	0	0	0	8	5911	low	.	.	.	.	.	ENSG00000257060	.	.	.	upstream	upstream	mismatches	.	.	.
CHST15(269178),OAT(34527)	FP236383.3	./.	+/.	10:124362776	21:8397828	intergenic	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
FRMD6	IFT43(29893),AC016526.4(17229)	+/.	./.	14:51587852	14:76114478	intron	intergenic	inversion	0	0	0	0	2	low	.	.	.	.	.	ENSG00000139926	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL512638.2(11092),ELOCP20(64162)	FP236383.3	./.	+/.	1:115492664	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
ANKRD50(7375),FAT4(594811)	ANKRD34C-AS1	./.	-/.	4:124720107	15:79162042	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000259234	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IL15(110187),INPP4B(178986)	LAMA3	./.	+/.	4:141844174	18:23756906	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000053747	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC096725.1(47117),LINC02494(359328)	SH3KBP1	./.	-/.	4:58165187	X:19564553	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000147010	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397823	21:8437078	intron	intron	inversion/3'-3'	0	0	0	1126	55	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
FP236383.3	PAXBP1(165),C21orf62-AS1(143)	+/.	./.	21:8447435	21:32771957	intron	intergenic	inversion	0	0	0	6	466	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	downstream	mismatches	.	.	.
SAMD12	DEDD2	-/.	-/.	8:118554924	19:42217199	intron	intron	translocation/3'-3'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	ENSG00000160570	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
NOS1AP	AC108037.1(159605),LINC02270(144152)	+/.	./.	1:162228984	4:12079293	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198929	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL138720.1(7179),AL050335.1(5597)	DENND5B	./.	-/.	6:15097349	12:31410380	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000170456	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	SLC25A12	-/-	-/-	11:9003964	2:171912427	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Mitochondrial_carrier_protein(100%)	.	.	ENSG00000175352	ENSG00000115840	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02041(107764),SST(111698)	OR5D3P(24083),OR5D17P(1273)	./.	./.	3:187557214	11:55753704	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AL356157.3(30449),AL356157.1(45338)	FP236383.3	./.	+/.	10:44545870	21:8442045	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8395074	21:8438949	intron	intron	inversion/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL589986.2	AGAP1	+/.	+/.	1:152206894	2:235775619	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236427	ENSG00000157985	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02864	FP671120.4	-/.	+/.	18:73168244	21:8214397	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000263711	ENSG00000278996	.	.	upstream	upstream	duplicates(10),mismatches(5)	.	.	.
DNMBP	ARHGEF7-IT1	-/.	+/.	10:99948205	13:111123867	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107554	ENSG00000233644	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
5_8S_rRNA(2085),FP236383.3(121625)	CR392039.1(944),CR392039.3(8122)	./.	./.	21:8259018	21:8988374	intergenic	intergenic	inversion	0	0	0	5911	48	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AL355674.1(96160),RORB-AS1(4813)	AL355674.1(96169),RORB-AS1(4804)	./.	./.	9:74480738	9:74480747	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8392868	21:8397823	intron	intron	inversion/3'-3'	0	0	0	43	1126	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
FP671120.4	FP671120.3(3894),FP671120.7(549)	+/.	./.	21:8214789	21:8254043	intron	intergenic	inversion	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AL138899.1(26084),CD1A(24463)	THEMIS	./.	-/.	1:158229961	6:127735531	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172673	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	AP003390.1(4499),AP001994.1(77182)	-/.	./.	6:42262463	11:119744122	intron	intergenic	translocation	0	0	0	2363	3002	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	low_entropy	.	.	.
HYDIN2	AC073612.1	+/.	+/.	1:146551982	12:71698816	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000258064	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
STEAP1B	AP003390.1(4502),AP001994.1(77179)	-/.	./.	7:22587137	11:119744125	intron	intergenic	translocation	0	0	0	4	3002	low	.	.	.	.	.	ENSG00000105889	.	.	.	downstream	downstream	mismatches	.	.	.
NLRP1(36386),AC135726.1(44416)	NLRP1(36399),AC135726.1(44403)	./.	./.	17:5655810	17:5655823	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
GPSM1	HBB	+/.	-/.	9:136338010	11:5225537	intron	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	ENSG00000160360	ENSG00000244734	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
BBS9	CEACAM21	+/.	+/.	7:33425896	19:41564258	intron	intron	translocation	0	0	0	62	5	low	.	.	.	.	.	ENSG00000122507	ENSG00000007129	.	.	upstream	downstream	duplicates(6),mismatches(5)	.	.	.
PRKD1	MTRNR2L10(829),PAGE5(37075)	-/.	./.	14:29791086	X:55183271	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184304	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02745	FP236383.3	-/.	+/.	11:42029388	21:8445488	intron	intron	translocation	0	0	0	9	6	low	.	.	.	.	.	ENSG00000255300	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916413	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749043	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKCZ	FP236383.3	+/.	+/.	1:2178890	21:8442059	intron	intron	translocation	0	0	0	2	5962	low	.	.	.	.	.	ENSG00000067606	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM119(10438),SELPLG(13137)	FP236383.3	./.	+/.	12:108608758	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
AL121776.1	HK1	+/+	+/+	20:47071971	10:69344805	exon	intron	translocation	0	0	0	6	0	low	.	.	|Hexokinase(93%)	.	.	ENSG00000239783	ENSG00000156515	.	.	downstream	upstream	mismatches(1)	.	.	.
TTYH3	FP236383.3	+/.	+/.	7:2660828	21:8399949	intron	intron	translocation	0	0	0	0	205	low	.	.	.	.	.	ENSG00000136295	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	AC046168.2	./.	+/.	5:175198325	15:77587771	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000259420	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
FRS3	C10orf143	-/.	-/.	6:41772936	10:130087458	CDS	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000137218	ENSG00000237489	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02041(107764),SST(111698)	NPM1P10(286384),AL357522.1(173948)	./.	./.	3:187557214	6:104313147	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
MFF-DT	LINC01060	-/-	+/-	2:227268528	4:188533877	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236432	ENSG00000249378	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
TBL1XR1	FP671120.4	-/.	+/.	3:177052293	21:8218215	intron	intron	translocation	0	0	0	1	15	low	.	.	.	.	.	ENSG00000177565	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2W	YBX2P2	-/.	-/.	8:73820102	15:93066410	intron	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000104343	ENSG00000258611	.	.	upstream	downstream	mismatches(1)	.	.	.
AC037486.1(187386),SMILR(99762)	WNK3	./.	-/.	8:122314570	X:54212768	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000196632	.	.	downstream	downstream	mismatches(1)	.	.	.
TEX101	MT-RNR1	+/.	+/.	19:43406229	MT:1044	5'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000131126	ENSG00000211459	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
PITPNM3	PITPNM3	-/.	-/.	17:6481846	17:6481900	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000091622	ENSG00000091622	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC01138	LTBP4	-/.	+/.	1:148317429	19:40619533	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000274020	ENSG00000090006	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2802),FP236383.3(120908)	FP236383.3	./.	+/.	21:8259735	21:8444191	intergenic	intron	inversion	0	0	0	4	214	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC004687.2	FP236383.3	-/.	+/.	17:58385559	21:8390479	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC012409.2	FP236383.3	+/.	+/.	15:96174456	21:8442660	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000275443	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NRG1(18725),RNU6-663P(37102)	MT-RNR2	./.	+/.	8:32874391	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TBL1XR1	FP236383.3	-/.	+/.	3:177052293	21:8401253	intron	intron	translocation	0	0	0	1	15	low	.	.	.	.	.	ENSG00000177565	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRR(12527),AC025174.1(5740)	ALDH7A1P3(16965),GIMAP4(8306)	./.	./.	5:7918552	7:150559063	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLCO1B1	CEACAM21	+/.	+/.	12:21146487	19:41564259	intron	intron	translocation/5'-5'	0	0	0	7	5	low	.	.	.	.	.	ENSG00000134538	ENSG00000007129	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.6	FP671120.7(395),5_8S_rRNA(872)	-/-	./-	21:8210559	21:8255909	exon	intergenic	duplication	0	0	0	16	74	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RCAN2	AC073534.1(1526821),ERVK-28(1948237)	-/.	./.	6:46469323	19:25690246	intron	intergenic	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172348	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
HFM1	AL359636.2	-/.	+/.	1:91387408	9:122558263	intron	intron	translocation	0	0	0	6	15	low	.	.	.	.	.	ENSG00000162669	ENSG00000234156	.	.	downstream	downstream	mismatches(2)	.	.	.
Y_RNA(92914),RNA5SP103(1240)	RUFY4(18122),CXCR2(16586)	./.	./.	2:128443841	2:218108703	intergenic	intergenic	inversion	0	0	0	7	193	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(15),homopolymer(10)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683475	15:81683484	intron	intron	duplication	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
CT75(36424),Y_RNA(15572)	Z95115.2	./.	+/.	2:222389413	22:26606612	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000286326	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01460(46826),MRPL33(9159)	WDR13	./.	+/.	2:27762558	X:48597821	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101940	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	IL3RA	+/.	+/.	11:47233103	X:1354864	intron	intron	translocation/5'-5'	0	0	0	341	18	low	.	.	.	.	.	ENSG00000134574	ENSG00000185291	.	.	downstream	downstream	duplicates(7),mismatches(2)	.	.	.
HFM1	SLCO1B1	-/.	+/.	1:91387408	12:21146487	intron	intron	translocation	0	0	0	6	7	low	.	.	.	.	.	ENSG00000162669	ENSG00000134538	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.3(594),FP671120.7(3849)	GNL3L	./.	+/.	21:8250743	X:54578338	intergenic	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	upstream	downstream	mismatches(2)	.	.	.
AC005833.1	AC005833.1	+/.	+/.	12:4702127	12:4702202	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255639	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC003087.1(115233),RNA5SP228(120137)	GPC6	./.	+/.	7:24012568	13:93360224	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000183098	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023347.1(105257),YWHAZP2(108186)	FP671120.3(594),FP671120.7(3849)	./.	./.	2:126449249	21:8250743	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HFM1	LINC02745	-/.	-/.	1:91387408	11:42029388	intron	intron	translocation	0	0	0	6	9	low	.	.	.	.	.	ENSG00000162669	ENSG00000255300	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7(391),5_8S_rRNA(876)	FP236383.3	./.	+/.	21:8255905	21:8398665	intergenic	intron	deletion/read-through	0	0	0	74	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(5),mismatches(5)	.	.	.
GCNT2	AC084759.1(43574),AC084759.3(29635)	+/.	./.	6:10627252	15:53881134	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HYDIN2	AC090579.1	+/.	-/.	1:146551982	8:106534226	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000253582	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC005833.1	GAU1	+/.	-/.	12:4702157	12:4702167	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255474	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDH13	CDH13	+/.	+/.	16:83134537	16:83134592	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000140945	ENSG00000140945	.	.	upstream	downstream	duplicates(2),low_entropy(4)	.	.	.
CDK20	FP236383.3	-/.	+/.	9:87972895	21:8444816	intron	intron	translocation/3'-3'	0	0	0	6	62	low	.	.	.	.	.	ENSG00000156345	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
AP003390.1(4394),AP001994.1(77287)	AP003390.1(4503),AP001994.1(77178)	./.	./.	11:119744017	11:119744126	intergenic	intergenic	duplication	0	0	0	3458	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
ARHGEF26-AS1	ACACA	-/-	-/-	3:154121333	17:37146744	exon	intron	translocation	0	0	0	0	9	low	.	.	|Carboxyl_transferase_domain(66%)	.	.	ENSG00000243069	ENSG00000278540	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC079760.1	FP236383.3	-/.	+/.	7:91494892	21:8433768	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235450	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FXNP1(22672),NRXN3(87423)	FXNP1(22683),NRXN3(87412)	./.	./.	14:78082950	14:78082961	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
HIVEP3	HIVEP3	-/.	-/.	1:41824785	1:41824798	intron	intron	duplication/ITD	0	0	0	6	0	low	.	.	.	.	.	ENSG00000127124	ENSG00000127124	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
LINC02225(171108),LINC02101(37361)	AC015908.2	./.	+/.	5:58070270	17:10879829	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263508	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
H3P28(100180),AL355297.2(11600)	LINC00343	./.	+/.	6:156762617	13:105709164	intergenic	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	.	ENSG00000226620	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC004980.1	AC004980.1	+/.	+/.	7:76580348	7:76580415	intron	intron	duplication/ITD	0	0	0	47	47	low	.	.	.	.	.	ENSG00000205485	ENSG00000205485	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DRD5P2	FP236383.3	-/-	+/-	1:144276692	21:8441971	exon	intron	translocation/5'-5'	0	0	0	0	30	low	.	.	.	.	.	ENSG00000175658	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396370	10:104396379	intron	intron	duplication/ITD	0	0	0	558	0	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
DGKH	AC004687.2	+/.	-/.	13:42040508	17:58385558	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000102780	ENSG00000285897	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749066	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL357146.1(3812),RNA5SP220(61058)	CCDC7	./.	+/.	6:140097533	10:32589154	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000216937	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092353	11:88092446	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(1),low_entropy(3),merge_adjacent	.	.	.
ZER1	AC109630.1	-/.	+/.	9:128756177	15:39489500	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160445	ENSG00000259269	.	.	downstream	downstream	mismatches(1)	.	.	.
HDLBP	RTL1	-/.	-/.	2:241239879	14:100900533	intron	intron	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000115677	ENSG00000254656	.	.	upstream	downstream	mismatches(1)	.	.	.
TNS1	AL133335.1(198311),DOK5(7740)	-/.	./.	2:217843796	20:54467853	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000079308	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP003390.1(4394),AP001994.1(77287)	./.	./.	11:107590331	11:119744017	intergenic	intergenic	inversion	0	0	0	1909	3458	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
AC027612.2	5_8S_rRNA(2003),FP236383.3(121707)	-/.	./.	2:91686309	21:8258936	intron	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000230572	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL356157.3(30449),AL356157.1(45338)	FP236383.3	./.	+/.	10:44545870	21:8399899	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SNAP47	RNF43	+/.	-/.	1:227740052	17:58385559	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143740	ENSG00000108375	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	5_8S_rRNA(1601),FP236383.3(122109)	-/.	./.	5:80650272	21:8258534	intron	intergenic	translocation	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
B4GALNT4	SHD	+/+	+/+	11:369540	19:4283869	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|SH2_domain(100%)	.	.	ENSG00000182272	ENSG00000105251	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
KIRREL2	KCNAB2	+/+	+/+	19:35862989	1:6035979	CDS	exon	translocation	0	0	0	0	10	low	.	.	CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)|Aldo/keto_reductase_family(100%)	.	.	ENSG00000126259	ENSG00000069424	.	.	downstream	upstream	mismatches(1)	.	.	.
AL020994.2(8721),AL049536.1(26476)	MT-RNR1	./.	+/.	22:27387986	MT:1419	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC005833.1	GAU1	+/.	-/.	12:4702127	12:4702200	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255474	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	4:152661290	4:152661299	intron	intron	duplication/ITD	0	0	0	16	7	low	.	.	.	.	.	ENSG00000170006	ENSG00000170006	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CAMK2A	AC027088.2(14950),GLCE(45647)	-/.	./.	5:150268435	15:69114937	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000070808	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MROH7-TTC4	MROH7-TTC4	+/.	+/.	1:54736176	1:54736191	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000271723	ENSG00000271723	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
NOS1	RUNX1	-/-	-/-	12:117265422	21:34951104	CDS	intron	translocation	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|Runt_domain(100%),Runx_inhibition_domain(100%)	.	.	ENSG00000089250	ENSG00000159216	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8205791	21:8442046	intron	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
AC023347.1(105259),YWHAZP2(108184)	MOCS1	./.	-/.	2:126449251	6:39909381	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000124615	.	.	downstream	downstream	mismatches(1)	.	.	.
COL14A1	SYN3	+/.	-/.	8:120126176	22:32882072	intron	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000187955	ENSG00000185666	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262467	6:42262484	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(2),low_entropy(6),merge_adjacent	.	.	.
MIR4300HG	AP003390.1(4394),AP001994.1(77287)	-/.	./.	11:82143179	11:119744017	intron	intergenic	deletion	0	0	0	1095	3458	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	mismatches	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683458	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(5),low_entropy(2),merge_adjacent	.	.	.
AL591004.1(13755),AL365503.1(232111)	MON1B	./.	+/.	6:67224235	16:77194699	intergenic	CDS	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000103111	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
KIAA2012	CTBP2	+/.	-/.	2:202083777	10:124992995	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000175029	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749052	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
AL157371.1(67423),AL109615.3(75967)	FP236383.3	./.	+/.	6:43919756	21:8397833	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
DNMBP	POLRMT	-/.	-/.	10:99948205	19:632544	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000107554	ENSG00000099821	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
CYP51A1P1(505971),AC023503.1(70453)	FP236383.3	./.	+/.	3:83313992	21:8433768	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	5:175967559	15:45463196	intron	intron	translocation/5'-5'	0	0	0	67	37	low	.	.	.	.	.	ENSG00000051596	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC008055.2	U3(104497),GPC1(41723)	+/+	./+	12:98420968	2:240393940	exon	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	ENSG00000286056	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL358113.1	HVCN1	+/.	-/.	9:69068525	12:110686646	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000285130	ENSG00000122986	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CDK13	MTRNR2L12	+/+	-/-	7:39951169	3:96618115	CDS	5'UTR	translocation	0	0	0	0	75	low	.	.	|Humanin_family(100%)	.	.	ENSG00000065883	ENSG00000269028	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749046	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
TRPC4AP	TEF	-/.	+/.	20:35084340	22:41381346	intron	intron	translocation/5'-5'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000100991	ENSG00000167074	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC009303.2	MRPS36	+/+	+/+	2:118055017	5:69217778	exon	5'UTR	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000235066	ENSG00000134056	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC005224.1(948),HS3ST3B1(2533)	SYN3	./.	-/.	17:14298548	22:32882072	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000185666	.	.	upstream	upstream	mismatches(1)	.	.	.
TRIM51	LINC01484	+/+	-/+	11:55885823	5:173742753	CDS	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	zinc_finger_of_C3HC4-type__RING(100%)|	.	.	ENSG00000124900	ENSG00000253686	.	.	downstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	X:32054092	X:32054103	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000198947	ENSG00000198947	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ERFE	RSU1P2	+/+	-/-	2:238163860	10:45132912	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178752	ENSG00000232554	.	.	downstream	downstream	mismatches(1)	.	.	.
TMPRSS13(31964),IL10RA(24947)	FP236383.3	./.	+/.	11:117961423	21:8397434	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DUX4L13(1689),DUX4L14(354)	DUX4L13(1781),DUX4L14(262)	./.	./.	10:133756205	10:133756297	intergenic	intergenic	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP32	RPL34P29(4462),AC007603.3(15171)	-/.	./.	11:128972549	16:49939814	CDS	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000134909	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005203.1	FP236383.3	-/.	+/.	18:4992677	21:8442052	intron	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	ENSG00000266268	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
HIVEP2	WDR86	-/.	-/.	6:142946392	7:151384281	intron	intron	translocation/3'-3'	0	0	0	63	1	low	.	.	.	.	.	ENSG00000010818	ENSG00000187260	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749079	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01358	BMS1P11(23056),AL359955.2(5036)	+/.	./.	1:59216837	9:64732367	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000237352	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749070	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
TCF12	ADAM10	+/.	-/.	15:57216570	15:58611641	intron	exon	duplication/3'-3'	0	0	0	26	6	low	.	.	.	.	.	ENSG00000140262	ENSG00000137845	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
PDZD2	LINC01287(16430),PAXBP1P1(19014)	+/.	./.	5:31869265	7:153430415	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000133401	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01731	LINC02620	-/.	-/.	1:148280011	10:104479908	intron	intron	translocation	0	0	0	55	1761	low	.	.	.	.	.	ENSG00000234283	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
ZNF274	PLCB4	+/.	+/.	19:58200775	20:9168924	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171606	ENSG00000101333	.	.	upstream	upstream	mismatches(1)	.	.	.
PTPRN2	AL954722.1(233864)	-/.	./.	7:158244937	X:19879	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000155093	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GDA	SQSTM1P1(123822),AL445668.1(8613)	+/.	./.	9:72149977	13:62530738	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119125	.	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
MTRNR2L8(254),RNF141(2233)	AL020994.2(8721),AL049536.1(26476)	./.	./.	11:10509440	22:27387986	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004158.1	BACH1	+/+	+/-	16:72427774	21:29263475	exon	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000260664	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL10L(115581),MDGA2(72267)	MTRNR2L10	./.	-/.	14:46767362	X:55181913	intergenic	3'UTR	translocation	0	0	0	5	23	low	.	.	.	.	.	.	ENSG00000256045	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
AC233702.2(14060),AC233702.1(6247)	MSN(5967),NANOGP9(24843)	./.	./.	17:21608240	X:65747898	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749064	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
AL356131.1(332832),MTRNR2L9(185)	FP236383.3	./.	+/.	6:61574143	21:8397442	intergenic	intron	translocation	0	0	0	65	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SNX1	AC004687.2	+/.	-/.	15:64095912	17:58385557	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000028528	ENSG00000285897	.	.	upstream	downstream	mismatches(1)	.	.	.
AC091804.1(832267),ALCAM(31376)	UNC13B	./.	+/.	3:105335533	9:35181560	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000198722	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MRC2	AL163974.1(22793),LINC00523(45131)	+/+	./+	17:62689983	14:100612119	CDS	intergenic	translocation	0	0	0	9	23	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC012507.2(26921),ITM2C(333)	KCNB1	./.	-/.	2:230864306	20:49450395	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000158445	.	.	upstream	upstream	mismatches(1)	.	.	.
CCNT2-AS1	CCNT2-AS1	-/.	-/.	2:134845512	2:134845525	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000224043	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
TARBP1	DDB2	-/.	+/.	1:234397788	11:47233105	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000059588	ENSG00000134574	.	.	downstream	downstream	duplicates(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463100	15:45463198	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
AC005833.1	GAU1	+/.	-/.	12:4702127	12:4702202	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255474	.	.	upstream	downstream	duplicates(1)	.	.	.
U3(104497),GPC1(41723)	AC022748.2	./.	+/.	2:240393940	15:78672957	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000261303	.	.	upstream	downstream	duplicates(9),mismatches(15)	.	.	.
HYDIN2	PTGER4P2-CDK2AP2P2(5279),MYO5BP1(4762)	+/.	./.	1:146551982	9:41288125	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749064	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
NRIP3	FIBIN(9775),BBOX1(33863)	-/-	./-	11:9003964	11:27006862	5'UTR	intergenic	duplication	0	0	0	0	7	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
AL589645.1	ADAMTS5(58793),GPX1P2(117463)	+/.	./.	9:34810175	21:27025881	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287368	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
GCLM	CRYBB1	-/.	-/.	1:93899685	22:26606612	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000023909	ENSG00000100122	.	.	downstream	upstream	mismatches(1)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	CERS5(251),LIMA1(8004)	./.	./.	5:36444163	12:50167784	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CPVL	SINHCAF	-/.	-/.	7:29122141	12:31326428	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106066	ENSG00000139146	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
RNU6-248P(2089),RNU6-261P(351959)	5_8S_rRNA(1687),FP236383.3(122023)	./.	./.	6:76095029	21:8258620	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	CERS5(251),LIMA1(8004)	./.	./.	5:175198325	12:50167784	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC022826.2	FP236383.3	-/.	+/.	8:73820108	21:8441654	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000258677	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
CFAP58	AP001823.1(3440),ELMOD1(748)	+/.	./.	10:104396370	11:107590343	intron	intergenic	translocation	0	0	0	558	1914	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC02686(7283),Y_RNA(186410)	MYO18A(50),AC005412.1(16623)	./.	./.	11:24269501	17:29180448	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC108073.3	PPP2R2D	-/.	+/.	4:187943697	10:131927768	exon	intron	translocation/3'-3'	0	0	0	13	0	low	.	.	.	.	.	ENSG00000286641	ENSG00000175470	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
PAX3	LINC02864	-/.	-/.	2:222298765	18:73168246	5'UTR	intron	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135903	ENSG00000263711	.	.	downstream	upstream	homopolymer(1)	.	.	.
CTSV(28036),TCEA1P1(70)	GPM6B	./.	-/.	9:97067679	X:13840677	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000046653	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA1614	GLDN	+/.	+/.	1:180940961	15:51341782	intron	CDS	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000135835	ENSG00000186417	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009093.11	FP671120.4	+/.	+/.	16:28724081	21:8214401	intron	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000288630	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LPP	AC233702.2(14058),AC233702.1(6249)	+/.	./.	3:188587619	17:21608238	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145012	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	RTKN	./.	-/.	2:53114408	2:74441099	intergenic	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000114993	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	ANKLE2	./.	-/.	5:175198325	12:132728596	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000176915	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC091804.1(832267),ALCAM(31376)	ANKLE2	./.	-/.	3:105335533	12:132728598	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000176915	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
FP236383.3	MRTFA	+/.	-/.	21:8442660	22:40519854	intron	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000196588	.	.	upstream	upstream	mismatches(1)	.	.	.
MFHAS1	LIN52(32940),VSX2(5274)	-/-	./-	8:8893384	14:74234175	5'UTR	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000147324	.	.	.	upstream	downstream	mismatches(3)	.	.	.
AC092506.1(281305),AL591888.1(490423)	AP001823.1(3429),ELMOD1(759)	./.	./.	1:104507983	11:107590332	intergenic	intergenic	translocation	0	0	0	26	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
DDB2	CLCN7	+/.	-/.	11:47233103	16:1471970	intron	intron	translocation/5'-5'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000103249	.	.	downstream	upstream	mismatches(1)	.	.	.
AC128709.3(26250),LINC02012(11907)	AC090017.1(164865),DUX4L52(202265)	./.	./.	3:197493355	12:61397802	intergenic	intergenic	translocation	0	0	0	4	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	Metazoa_SRP(19036),UBE2Q2P12(4297)	./.	./.	5:36444163	15:84487183	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TDO2	FP236383.3	+/.	+/.	4:155871604	21:8397434	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000151790	ENSG00000280441	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
LRAT	AC009053.4(11524),CLEC18B(3563)	+/.	./.	4:154635455	16:74404707	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000121207	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
THADA	ITGAX	-/.	+/.	2:43464624	16:31365331	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000115970	ENSG00000140678	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257421	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
LINC00607	LINC02261(122974),IGBP1P5(179946)	-/.	./.	2:215796354	4:27405199	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000235770	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC091804.1(832267),ALCAM(31376)	Metazoa_SRP(19034),UBE2Q2P12(4299)	./.	./.	3:105335533	15:84487181	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SPEG	AL009177.1	+/.	+/.	2:219486801	6:14487262	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000072195	ENSG00000286277	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.10(126826),RPSAP68(8090)	+/.	./.	21:8438949	21:8595457	intron	intergenic	inversion	0	0	0	139	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	ZIC5	+/.	-/.	2:32916448	13:99971192	intron	CDS	translocation/3'-3'	0	0	0	17	12	low	.	.	.	.	.	ENSG00000230876	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
SMAD2	RPL21P12(17605),GCSHP2(17191)	-/-	./-	18:47931060	14:103167013	5'UTR	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000175387	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC091804.1(832267),ALCAM(31376)	UBE2Q2L	./.	+/.	3:105335533	15:84186378	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000259511	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
IQCH-AS1	U91319.1(53504),U95743.1(111762)	-/.	./.	15:67310424	16:13616892	intron	intergenic	translocation	0	0	0	40	2	low	.	.	.	.	.	ENSG00000259673	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
DEDD2	KRT8P27(3759),GRPEL2P2(69546)	-/.	./.	19:42217199	X:64628332	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000160570	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
SPOCK1	BRD1	-/.	-/.	5:137408734	22:49805282	intron	intron	translocation	0	0	0	2	1	low	.	.	.	.	.	ENSG00000152377	ENSG00000100425	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGEF26-AS1	AP000696.3(11082),AP000696.1(40370)	-/-	./+	3:154121335	21:36592311	exon	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000243069	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
HIVEP2	AVEN	-/.	-/.	6:142946392	15:34050743	intron	intron	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000169857	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL591004.1(13753),AL365503.1(232113)	SERGEF	./.	-/.	6:67224233	11:18012760	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000129158	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	AC044860.1	./.	-/.	5:175198325	15:85190990	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000229212	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	NELL1	./.	+/.	4:186749803	11:20857318	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165973	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	RPSAP68(44963),CR381572.2(31591)	+/.	./.	21:8214783	21:8648947	intron	intergenic	duplication	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
SLCO5A1	KPNA2(42038),FBXO36P1(5666)	-/.	./.	8:69690369	17:68089402	intron	intergenic	translocation	0	0	0	53	0	low	.	.	.	.	.	ENSG00000137571	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001360.2(25378),TRIM29(57567)	MAPKBP1	./.	+/.	11:120053719	15:41818882	intergenic	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000137802	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022973.5	FP236383.3	+/.	+/.	8:129834827	21:8437518	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000254317	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC034228.3	NFATC1	-/.	+/.	5:132011045	18:79524774	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000281938	ENSG00000131196	.	.	downstream	downstream	mismatches(1)	.	.	.
PCP4L1	RAB30	+/.	-/.	1:161268557	11:83068816	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000248485	ENSG00000137502	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
EIF3C	5_8S_rRNA(1691),FP236383.3(122019)	+/.	./.	16:28724081	21:8258624	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000184110	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TSPOAP1-AS1	FTHL17(104),DMD(25532)	+/.	./.	17:58385557	X:31072145	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000265148	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC009303.2	SH3PXD2B	+/+	-/-	2:118055017	5:172380127	exon	intron	translocation	0	0	0	24	0	low	.	.	|SH3_domain(100%),Variant_SH3_domain(100%)	.	.	ENSG00000235066	ENSG00000174705	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
BAIAP2L1(190),PPIAP82(52839)	5_8S_rRNA(2090),FP236383.3(121620)	./.	./.	7:98401280	21:8259023	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(2)	.	.	.
5_8S_rRNA(1686),FP236383.3(122024)	PCDH11X	./.	+/.	21:8258619	X:92108311	intergenic	intron	translocation	0	0	0	543	0	low	.	.	.	.	.	.	ENSG00000102290	.	.	upstream	upstream	mismatches(1)	.	.	.
NALCN-AS1	FP236383.3	+/.	+/.	13:100887357	21:8397444	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000233009	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
VAV3	AC239798.1(11468),AC239798.2(8792)	-/.	./.	1:107670554	1:143837305	intron	intergenic	deletion	0	0	0	20	0	low	.	.	.	.	.	ENSG00000134215	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009303.2	LINC01707	+/+	+/+	2:118055017	1:69113579	exon	intron	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000235066	ENSG00000223883	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
SSBP4	AC092066.1(2378),CBLC(10027)	+/+	./+	19:18433847	19:44767842	CDS	intergenic	deletion	0	0	0	1	0	low	.	.	Single-stranded_DNA_binding_protein__SSDP(100%)|	.	.	ENSG00000130511	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CEMIP2(21729),ABHD17B(24033)	AC121334.1(19777),AC121334.2(52459)	./.	./.	9:71838419	12:39487122	intergenic	intergenic	translocation	0	0	0	0	49	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC008269.1	CDK14	+/.	+/.	2:206862123	7:90751922	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	ENSG00000058091	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7(1037),5_8S_rRNA(230)	FP236383.3	./.	+/.	21:8256551	21:8442056	intergenic	intron	deletion/read-through	0	0	0	21	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(6)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	UNC13B	./.	+/.	5:36444163	9:35181558	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000198722	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MUC5B	ATP7B	+/.	-/.	11:1236372	13:51981516	intron	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000117983	ENSG00000123191	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01951(202812),ARL2BPP6(92406)	CALN1	./.	-/.	5:175198325	7:71884517	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000183166	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1375482	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008014.1(15861),AC079906.1(77859)	AC005258.1	./.	+/.	12:46892645	19:2338920	intergenic	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	.	ENSG00000273734	.	.	downstream	downstream	mismatches(1)	.	.	.
FP700111.1	FP236383.3	+/.	+/.	1:144689684	21:8441971	intron	intron	translocation/5'-5'	0	0	0	0	30	low	.	.	.	.	.	ENSG00000224363	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
ARID1B	FP671120.4	+/+	+/+	6:156778760	21:8214788	CDS	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000049618	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DENND2B	FP236383.3	-/.	+/.	11:8868036	21:8400575	intron	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000166444	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
KATNAL1	PAPPA	-/-	+/+	13:30203917	9:116228281	3'UTR	intron	translocation	0	0	0	1	0	low	.	.	AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),Vps4_C_terminal_oligomerisation_domain(100%)|Sushi_repeat_(SCR_repeat)(100%)	.	.	ENSG00000102781	ENSG00000182752	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4498),AP001994.1(77183)	FP236383.3	./.	+/.	11:119744121	21:8414018	intergenic	intron	translocation	0	0	0	3002	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
BAIAP2L1(191),PPIAP82(52838)	FP236383.3	./.	+/.	7:98401281	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
INPP4B	AC083849.1(8320),AC006974.1(18980)	-/.	./.	4:142713193	7:148454619	intron	intergenic	translocation	0	0	0	17	1	low	.	.	.	.	.	ENSG00000109452	.	.	.	downstream	upstream	mismatches(1)	.	.	.
IQCH	FP671120.4	+/.	+/.	15:67310424	21:8206534	intron	intron	translocation/3'-3'	0	0	0	40	9	low	.	.	.	.	.	ENSG00000103599	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463097	15:45463186	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(8),low_entropy(3)	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	7:129531132	15:45463192	intergenic	intron	translocation	0	0	0	68	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PTGDS	5_8S_rRNA(2086),FP236383.3(121624)	+/+	./+	9:136980150	21:8259019	exon	intergenic	translocation	0	0	0	4	5911	low	.	.	Lipocalin_/_cytosolic_fatty-acid_binding_protein_family(75%)|	.	.	ENSG00000107317	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6-393P(16786),TMEM130(34878)	AC025580.2	./.	+/.	7:98811610	15:45463193	intergenic	intron	translocation	0	0	0	1	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
UNC5B	FP236383.3(930),FP236383.11(6598)	+/+	./+	10:71293867	21:8455722	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(9%),ZU5_domain(100%)|	.	.	ENSG00000107731	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP326651.1(2006),Y_RNA(175006)	DDB2	./.	+/.	9:65398378	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU6-393P(16786),TMEM130(34878)	AC025580.2	./.	+/.	7:98811610	15:45463196	intergenic	intron	translocation	0	0	0	1	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SGCZ	FP671120.4	-/.	+/.	8:14216765	21:8207432	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185053	ENSG00000278996	.	.	upstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC018816.1	AMD1P1(55145),AL590032.1(140926)	-/.	./.	3:4868487	10:20406245	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235978	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463100	15:45463196	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC025580.2	LINC01572	+/.	-/.	15:45463195	16:72538750	intron	intron	translocation/5'-5'	0	0	0	37	0	low	.	.	.	.	.	ENSG00000259354	ENSG00000261008	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC021218.1(49386),Y_RNA(170393)	CPNE7	./.	+/.	7:156015729	16:89587959	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000178773	.	.	upstream	downstream	mismatches(1)	.	.	.
VAV3	AC079760.2	-/.	+/.	1:107670554	7:91493507	intron	exon	translocation/3'-3'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000134215	ENSG00000243144	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
RPS7P4(20383),COX6B1P7(18950)	FP236383.3	./.	+/.	1:68263438	21:8441654	intergenic	intron	translocation	0	0	0	3	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
MTND1P22(591),AC107208.1(31696)	AC092757.2	./.	+/.	4:155464414	15:59122737	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000259732	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
LINC00692(18212),RPEP2(123709)	SDK1	./.	+/.	3:25891960	7:4133259	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000146555	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262586	intron	intron	translocation	0	0	0	144	1540	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
CFAP20DC	AL078602.1	-/.	+/.	3:58909738	6:164005371	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689	ENSG00000235538	.	.	downstream	downstream	mismatches(1)	.	.	.
AC084337.2	CLCN7	+/.	-/.	11:6496217	16:1471975	intron	intron	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	ENSG00000103249	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC006499.8(7831),RAF1P1(8860)	PTPRS	./.	-/.	4:10246066	19:5311385	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000105426	.	.	upstream	downstream	mismatches(1)	.	.	.
AL009177.1(22457),AL109914.1(72356)	HDAC8	./.	-/.	6:14525158	X:72350912	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000147099	.	.	upstream	downstream	mismatches(1)	.	.	.
FIGNL2	RTN1	-/.	-/.	12:51846742	14:59870262	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261308	ENSG00000139970	.	.	upstream	upstream	mismatches(1)	.	.	.
WAC	RNF43	+/+	-/-	10:28533924	17:58385558	5'UTR	intron	translocation	0	0	0	4	0	low	.	.	|Ring_finger_domain(100%),ZNRF-3_Ectodomain(97%)	.	.	ENSG00000095787	ENSG00000108375	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PDS5A	FP236383.3	-/.	+/.	4:39875782	21:8396371	intron	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP326651.1(2060),Y_RNA(174952)	DDB2	./.	+/.	9:65398432	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
SPC25	MT-RNR1	-/.	+/.	2:168903786	MT:1502	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000152253	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
LINC00841	B3GAT1-DT	+/.	+/.	10:43973598	11:134501046	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000233395	ENSG00000255545	.	.	upstream	downstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275727	13:49275796	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	duplicates(34),low_entropy(6)	.	.	.
ARHGAP30	LGI2(57572),SEPSECS(31496)	-/-	./-	1:161069772	4:25088518	5'UTR	intergenic	translocation	0	0	0	0	68	low	.	.	.	.	.	ENSG00000186517	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
LIN52(32941),VSX2(5273)	FP671120.3(461),FP671120.7(3982)	./.	./.	14:74234176	21:8250610	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	MT-RNR2	./.	+/.	3:103984260	MT:1698	intergenic	exon	translocation	0	0	0	83	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749082	intergenic	intron	translocation	0	0	0	0	221	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
CTB-178M22.2	FP236383.3	-/.	+/.	5:168236204	21:8437518	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000253978	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPL9P15(50532),AC073359.2(99365)	CLCN7	./.	-/.	3:154727651	16:1471971	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000103249	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	AL050402.1(83516),AL133456.1(20263)	./.	./.	3:95431526	22:27543576	intergenic	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AC128709.3(26250),LINC02012(11907)	ALDH7A1P3(16965),GIMAP4(8306)	./.	./.	3:197493355	7:150559063	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
THRAP3	AC110588.1(7766),FAM149B1P1(197704)	+/.	./.	1:36288846	15:96559283	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000054118	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNU6-412P(125671),RAC1P2(66817)	AC008014.1	./.	+/.	4:46657013	12:46639336	intergenic	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000257261	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4499),AP001994.1(77182)	GPC3	./.	-/.	11:119744122	X:133661643	intergenic	intron	translocation	0	0	0	3002	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
Y_RNA(62868),Y_RNA(80967)	KIAA2012	./.	+/.	1:184234691	2:202083777	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182329	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	MSH3	-/.	+/.	5:80650932	5:80719718	intron	intron	deletion/read-through/3'-3'	0	0	0	81	1	low	.	.	.	.	.	ENSG00000228716	ENSG00000113318	.	.	downstream	upstream	read_through(1)	.	.	.
DDB2	AL031600.2	+/.	-/.	11:47233103	16:1471970	intron	intron	translocation/5'-5'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000261430	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00273(640),RNA5-8SP2(2283)	MT-RNR2	./.	+/.	16:34160676	MT:2116	intergenic	exon	translocation	0	0	0	20	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
SLC30A6	AC013489.2(9289),LINC01586(7715)	+/.	./.	2:32179891	15:88577851	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000152683	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ABBA01000935.2	Y_RNA(29987),AC093813.1(47337)	-/.	./.	3:91399945	7:156216210	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000283544	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01255	BX284656.1(14693),AL008720.1(96981)	+/.	./.	18:11515758	22:48157922	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000267252	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ALPK1	FP236383.3	+/.	+/.	4:112302315	21:8389583	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000073331	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC2A9	FP236383.3	-/.	+/.	4:9774828	21:8400362	intron	intron	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02794	AC010196.1	+/.	-/.	1:48055750	12:86600963	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226133	ENSG00000258185	.	.	upstream	upstream	mismatches(1)	.	.	.
TECPR1	ADARB2	-/.	-/.	7:98229025	10:1560535	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000205356	ENSG00000185736	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RREB1	BACH1-IT3	+/.	+/.	6:7152861	21:29498375	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000124782	ENSG00000234293	.	.	downstream	downstream	mismatches(1)	.	.	.
AL139042.1	FP236383.3	-/.	+/.	6:88378478	21:8397817	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000234426	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC119673.2	GDF15	+/.	+/.	1:205836421	19:18380295	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286619	ENSG00000130513	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
USP4	ATP9B(2396),NFATC1(15173)	-/.	./.	3:49338855	18:79380683	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000114316	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGEF26-AS1	AC104117.3	-/-	+/+	3:154121333	5:178973134	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	ENSG00000254035	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
PSMB7	IQCH	-/.	+/.	9:124390167	15:67310435	intron	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	ENSG00000136930	ENSG00000103599	.	.	upstream	upstream	mismatches(1)	.	.	.
EFNA5(410),AC024587.2(28045)	NXNL1	./.	-/.	5:107671347	19:17456613	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000171773	.	.	upstream	downstream	mismatches(1)	.	.	.
RN7SL89P(51333),PPA2(23798)	AC099685.1(49187),UNC5D(92779)	./.	./.	4:105345279	8:35142696	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GAPDHP36(89379),RALBP1P1(20620)	PHKB	./.	+/.	3:180302487	16:47491353	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000102893	.	.	upstream	downstream	mismatches(1)	.	.	.
CPA2	ATP9B(2396),NFATC1(15173)	+/.	./.	7:130270622	18:79380683	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000158516	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ITGA2B	AC009161.1(206458),AC009110.1(32168)	-/-	./-	17:44384408	16:62564204	exon	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000005961	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC114811.1(10021),BTF3P13(16750)	TMC4(94),MBOAT7(68)	./.	./.	4:98723992	19:54173344	intergenic	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC114321.1(205469),AC026403.1(21397)	ARHGAP19-SLIT1	./.	-/.	5:166360908	10:97179805	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000269891	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP000255.1(48532),TPT1P1(55402)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784939	21:31785031	intergenic	intergenic	duplication/ITD	0	0	0	220	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
AC004047.1(45684),RNU6-635P(420)	HMGA1	./.	+/.	4:103924120	6:34237477	intergenic	intron	translocation	0	1	0	0	0	low	.	.	.	.	.	.	ENSG00000137309	.	.	upstream	downstream	min_support	.	.	.
DLG2	FP671120.7(397),5_8S_rRNA(870)	-/.	./.	11:85484195	21:8255911	intron	intergenic	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	.	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
ARHGAP19-SLIT1	CRTAC1	-/.	-/.	10:97179803	10:98026055	intron	intron	inversion/5'-5'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000269891	ENSG00000095713	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DENND3(7632),SLC45A4(3726)	IGHVIII-38-1(817),IGHV4-39(2595)	./.	./.	8:141203440	14:106419116	intergenic	intergenic	translocation	0	0	0	2	162	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AC022826.2	CEMIP2(21730),ABHD17B(24032)	-/.	./.	8:73820101	9:71838420	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
AC114321.1(205469),AC026403.1(21397)	LINC02530(23828),PHACTR1(107322)	./.	./.	5:166360908	6:12609232	intergenic	intergenic	translocation	0	0	0	10	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CMSS1	FP236383.3	+/.	+/.	3:100176253	21:8442051	exon	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000184220	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	3:64736214	3:64736223	intron	intron	duplication/ITD	0	0	0	57	56	low	.	.	.	.	.	ENSG00000241684	ENSG00000241684	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
H3C10	C10orf143	+/.	-/.	6:27810927	10:130103977	3'UTR	intron	translocation	0	0	0	0	49	low	.	.	.	.	.	ENSG00000278828	ENSG00000237489	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
AL359636.2	FP671120.4	+/.	+/.	9:122558263	21:8218218	intron	intron	translocation	0	0	0	15	15	low	.	.	.	.	.	ENSG00000234156	ENSG00000278996	.	.	downstream	upstream	mismatches(2)	.	.	.
LINC02530(23830),PHACTR1(107320)	CRTAC1	./.	-/.	6:12609234	10:98026055	intergenic	intron	translocation	0	0	0	2	11	low	.	.	.	.	.	.	ENSG00000095713	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96617460	21:8397351	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLCO5A1	MT-RNR2	-/.	+/.	8:69690371	MT:2223	intron	exon	translocation/3'-3'	0	0	0	53	.	low	.	.	.	.	.	ENSG00000137571	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	TTTY2B	./.	-/.	14:100612119	Y:6414448	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000212856	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL21P18(19879),RNA5SP362(8628)	RPL21P18(19893),RNA5SP362(8614)	./.	./.	12:66057593	12:66057607	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NOS1AP	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	1:162359727	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198929	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
KRT18P55	AC073529.1	-/.	-/.	17:28307146	X:10947514	exon	intron	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000265480	ENSG00000234129	.	.	downstream	upstream	mismatches(1)	.	.	.
AC114321.1(205469),AC026403.1(21397)	NUDT13	./.	+/.	5:166360908	10:73120136	intergenic	CDS	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000166321	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	HAND2	./.	-/.	2:218108703	4:173529804	intergenic	5'UTR	translocation	0	0	0	193	2	low	.	.	.	.	.	.	ENSG00000164107	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DNAH14	AP001823.1(3434),ELMOD1(754)	+/.	./.	1:225078862	11:107590337	intron	intergenic	translocation	0	0	0	171	1909	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	upstream	mismatches	.	.	.
HAND2	ERN2	-/.	-/.	4:173529808	16:23702061	5'UTR	intron	translocation/3'-3'	0	0	0	2	8	low	.	.	.	.	.	ENSG00000164107	ENSG00000134398	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC004687.2	FP671120.4	-/.	+/.	17:58385557	21:8213338	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000285897	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	RPS6P21(3131),SFSWAP(39704)	./.	./.	6:144085397	12:131671377	intergenic	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DIP2C	EP300	-/.	+/.	10:301863	22:41094609	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151240	ENSG00000100393	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PLOD1	RPS6KA2	+/.	-/.	1:11955057	6:166727447	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000083444	ENSG00000071242	.	.	upstream	downstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	X:133661561	X:133661634	intron	intron	duplication/ITD	0	0	0	143	143	low	.	.	.	.	.	ENSG00000147257	ENSG00000147257	.	.	upstream	downstream	duplicates(6),low_entropy(14)	.	.	.
HTR1E	FP236383.3	+/.	+/.	6:86956265	21:8397434	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000168830	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	LINC02864	-/.	-/.	11:85484188	18:73168245	intron	intron	translocation/5'-5'	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000263711	.	.	upstream	upstream	duplicates(18),mismatches(13)	.	.	.
RN7SL478P(17939),LMTK2(90301)	AC008014.1	./.	+/.	7:98016561	12:46639334	intergenic	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000257261	.	.	upstream	upstream	duplicates(5),mismatches(2)	.	.	.
KPNA2(42038),FBXO36P1(5666)	FP671120.4	./.	+/.	17:68089402	21:8217546	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
BICC1	ARHGAP19-SLIT1	+/.	-/.	10:58688003	10:97179807	intron	intron	deletion/5'-5'	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000269891	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TSPOAP1-AS1	FP671120.4	+/.	+/.	17:58385559	21:8207432	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	ENSG00000278996	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AL592295.1	LINC01514(17915),LBX1(14133)	+/.	./.	1:161406098	10:101212062	exon	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000215840	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
SMYD2	IQCH	+/.	+/.	1:214296571	15:67310435	intron	intron	translocation	0	0	0	14	40	low	.	.	.	.	.	ENSG00000143499	ENSG00000103599	.	.	downstream	upstream	duplicates(7),mismatches(5)	.	.	.
MROH7-TTC4	TTC4	+/.	+/.	1:54736176	1:54736191	intron	intron	duplication	0	0	0	14	14	low	.	.	.	.	.	ENSG00000271723	ENSG00000243725	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
PODXL	ABHD17B	-/.	-/.	7:131541800	9:71904276	intron	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000128567	ENSG00000107362	.	.	upstream	upstream	mismatches(1)	.	.	.
ASAP1	ZNF606	-/.	-/.	8:130071010	19:57994855	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000153317	ENSG00000166704	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	X:32054089	X:32054102	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000198947	ENSG00000198947	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
DDX43P2(110159),AC092448.1(154203)	DDX43P2(110214),AC092448.1(154148)	./.	./.	7:49370005	7:49370060	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(14),low_entropy(2)	.	.	.
TPT1P14(48520),RPL35AP37(90454)	TPT1P14(48531),RPL35AP37(90443)	./.	./.	X:15026983	X:15026994	intergenic	intergenic	duplication/ITD	0	0	0	26	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),low_entropy(6)	.	.	.
U3(104497),GPC1(41723)	TRAPPC9	./.	-/.	2:240393940	8:140089241	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000167632	.	.	upstream	downstream	mismatches(2)	.	.	.
AC099552.4(12093),AC099552.2(31193)	IQCD	./.	-/.	7:155235944	12:113201717	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000166578	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8252767	21:8442048	intergenic	intron	deletion/read-through	0	0	0	9	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
OTX1	AC084337.2	+/.	+/.	2:63051502	11:6496218	exon	intron	translocation/3'-3'	0	0	0	0	101	low	.	.	.	.	.	ENSG00000115507	ENSG00000283977	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
MLYCD	U3(104497),GPC1(41723)	+/+	./+	16:83922180	2:240393940	3'UTR	intergenic	translocation	0	0	0	0	357	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009154.1	FP671120.4	+/.	+/.	16:86665156	21:8209833	intron	intron	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000261161	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC026403.1(460546),LINC01947(62077)	HDAC6	./.	+/.	5:166843145	X:48801483	intergenic	5'UTR	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000094631	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL160313.1	AC027506.1(39530),AC090348.1(154741)	+/.	./.	14:99606115	18:64717523	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000247970	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785691	intron	intron	translocation	0	0	0	144	496	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
GPR39	CPS1	+/.	+/.	2:132557875	2:210501151	intron	intron	deletion	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000021826	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092999.1(88054),IQCJ-SCHIP1(2360)	LHFPL2	./.	-/.	3:158959875	5:78676319	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000145685	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683461	15:81683470	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
H3-3B	AC093894.2	-/-	-/-	17:75778989	2:101557969	exon	intron	translocation	0	0	0	0	3	low	.	.	Core_histone_H2A/H2B/H3/H4(32%)|	.	.	ENSG00000132475	ENSG00000286101	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2927),FP236383.3(120783)	+/.	./.	21:8211699	21:8259860	intron	intergenic	deletion/read-through	0	0	0	0	31	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	duplicates(5),mismatches(5)	.	.	.
PPP2CA	FP671120.4	-/.	+/.	5:134225648	21:8214794	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000113575	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
KCNH8	KCNH8	+/.	+/.	3:19308659	3:19308668	intron	intron	duplication/ITD	0	0	0	119	119	low	.	.	.	.	.	ENSG00000183960	ENSG00000183960	.	.	upstream	downstream	low_entropy(2)	.	.	.
ANKRD34C-AS1	AP001599.1	-/.	+/.	15:79162042	21:26914103	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000259234	ENSG00000223563	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257410	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	low_entropy(1)	.	.	.
ERI3	AC026412.1	-/.	-/.	1:44320094	5:1602549	intron	exon	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000188002	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
UTS2(32675),TNFRSF9(29684)	RNU6-649P(75156),AC073143.1(293201)	./.	./.	1:7886187	2:5020539	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
IPO9-AS1	IPO9-AS1	-/.	-/.	1:201702678	1:201702687	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000231871	ENSG00000231871	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LEFTY1	UBE2W	-/.	-/.	1:225887708	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000243709	ENSG00000104343	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
IL3RA	ASMTL	+/.	-/.	X:1354867	X:1411218	intron	intron	deletion/read-through/5'-5'	0	0	0	18	0	low	.	.	.	.	.	ENSG00000185291	ENSG00000169093	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
AC079193.1(4366),ZDHHC2(1228)	AL163974.1(22793),LINC00523(45131)	./.	./.	8:17155254	14:100612119	intergenic	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C4orf54(33072),DAPP1(129107)	SIL1	./.	-/.	4:99687720	5:139105650	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000120725	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396370	10:104396462	intron	intron	duplication/ITD	0	0	0	558	74	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	small_insert_size	.	.	.
AL450267.2	DDB2	+/.	+/.	9:36819085	11:47233104	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000287514	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	AP001347.1	+/.	+/.	21:8215507	21:14100748	intron	intron	duplication	0	0	0	2	1	low	.	.	.	.	.	ENSG00000278996	ENSG00000224905	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	CARTPT(10916),AC143336.1(22414)	./.	./.	3:95431526	5:71731964	intergenic	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRR(12527),AC025174.1(5740)	LINC00271	./.	+/.	5:7918552	6:135653248	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000231028	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
B3GALNT1	FP236383.3	-/.	+/.	3:161095878	21:8442062	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000169255	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA2012	AC104109.3	+/.	-/.	2:202083777	5:134225648	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000272772	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
FXNP1(22673),NRXN3(87422)	FXNP1(22684),NRXN3(87411)	./.	./.	14:78082951	14:78082962	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TPCN2	FP671120.4	+/.	+/.	11:69104798	21:8214793	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000162341	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01287	AC015813.5(36050),AC015813.8(6552)	-/.	./.	7:153410186	17:58044237	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000234722	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP326651.1(1934),Y_RNA(175078)	DDB2	./.	+/.	9:65398306	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	SUSD5(52300),FBXL2(5915)	./.	./.	2:240393940	3:33271110	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(11),mismatches(13)	.	.	.
AL133372.2	5_8S_rRNA(2094),FP236383.3(121616)	-/.	./.	14:30207313	21:8259027	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000248975	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EFCAB2(2716),RNU1-132P(4047)	FP671120.4	./.	+/.	1:245129880	21:8215506	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SNTG2	CACNA2D2	+/.	-/.	2:1349091	3:50414834	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172554	ENSG00000007402	.	.	upstream	upstream	mismatches(1)	.	.	.
OBP2A	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	9:135549378	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000122136	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SEMA5B(2018),PDIA5(36402)	SEMA5B(2033),PDIA5(36387)	./.	./.	3:123030623	3:123030638	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(69),low_entropy(6)	.	.	.
AL450267.2	AL050309.1	+/.	+/.	9:36819085	X:56010863	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287514	ENSG00000227486	.	.	upstream	upstream	mismatches(1)	.	.	.
AL121776.1	LINC00703	+/+	+/-	20:47071968	10:4389675	exon	intron	translocation/5'-5'	0	0	0	6	2	low	.	.	.	.	.	ENSG00000239783	ENSG00000224382	.	.	downstream	downstream	mismatches(1)	.	.	.
EFCAB2(2716),RNU1-132P(4047)	FP236383.3	./.	+/.	1:245129880	21:8442769	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PLEC	DDB2	-/.	+/.	8:143930917	11:47233103	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000178209	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
KIF5C	FP671120.3(465),FP671120.7(3978)	+/.	./.	2:149002076	21:8250614	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000168280	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC6A12	AC011523.1	-/.	+/.	12:199333	19:50841602	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111181	ENSG00000267968	.	.	upstream	downstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092431	11:88092446	intron	intron	duplication/ITD	0	0	0	1	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(6),low_entropy(1)	.	.	.
DIS3L2(991),ECEL1P3(4413)	AP001347.1	./.	+/.	2:232345341	21:14100748	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000224905	.	.	downstream	downstream	mismatches(1)	.	.	.
OLFML3(45687),SYT6(8032)	NPAS3	./.	+/.	1:114081259	14:33799874	intergenic	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	.	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
HIVEP2	AL732509.1	-/.	+/.	6:142946393	X:19046390	intron	intron	translocation	0	0	0	63	1	low	.	.	.	.	.	ENSG00000010818	ENSG00000286724	.	.	downstream	downstream	low_entropy(1)	.	.	.
SASS6	KCNK12	-/.	-/.	1:100132740	2:47521639	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000156876	ENSG00000184261	.	.	downstream	downstream	mismatches(1)	.	.	.
RN7SL547P(135273),AL031679.1(62674)	FP236383.3	./.	+/.	20:7769124	21:8400575	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC128676.1(537858),RNU6-417P(197927)	FP236383.3	./.	+/.	7:62813536	21:8444816	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02240	KRT8	+/.	-/.	5:125225191	12:52904196	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260192	ENSG00000170421	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC020916.1	KRT8P27(3758),GRPEL2P2(69547)	-/.	./.	19:13829913	X:64628331	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000267519	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
UBE3C(2773),AC004975.2(9393)	LINC01405(39644),CUX2(35428)	./.	./.	7:157272143	12:110998737	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ARMH3	BACH1	-/.	+/.	10:102029904	21:29263475	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000120029	ENSG00000156273	.	.	downstream	downstream	mismatches(1)	.	.	.
ST13P7(72604),EXOC4(9955)	ST13P7(72617),EXOC4(9942)	./.	./.	7:133243118	7:133243131	intergenic	intergenic	duplication/ITD	0	0	0	24	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
ELP1	AC106886.2	-/-	+/-	9:108866913	16:30749091	exon	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	IKI3_family(100%)|	.	.	ENSG00000070061	ENSG00000260899	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022826.2	FP565260.4(2303),FP565260.3(3045)	-/.	./.	8:73820101	21:5019448	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01237	LINC01205	+/.	+/.	2:241961648	3:109700822	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233806	ENSG00000228980	.	.	upstream	upstream	mismatches(3)	.	.	.
DPP6	ZZEF1	+/.	-/.	7:154054156	17:4006415	intron	3'UTR	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000130226	ENSG00000074755	.	.	downstream	downstream	mismatches(1)	.	.	.
MYT1	FP236383.3	+/.	+/.	20:64118266	21:8397914	intron	intron	translocation/3'-3'	0	0	0	0	79	low	.	.	.	.	.	ENSG00000196132	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(1)	.	.	.
CFAP20DC	ANK2	-/.	+/.	3:58909738	4:113275782	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163689	ENSG00000145362	.	.	downstream	upstream	mismatches(1)	.	.	.
PLXNA4	PLXNA4	-/.	-/.	7:132188994	7:132189009	intron	intron	duplication/ITD	0	0	0	476	256	low	.	.	.	.	.	ENSG00000221866	ENSG00000221866	.	.	upstream	downstream	duplicates(2),low_entropy(11)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	12:16193776	12:16193837	intron	intron	duplication/ITD	0	0	0	28	28	low	.	.	.	.	.	ENSG00000188991	ENSG00000188991	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
Z93929.1(11436),MDM4P1(21580)	Z93929.1(11445),MDM4P1(21571)	./.	./.	X:17911769	X:17911778	intergenic	intergenic	duplication/ITD	0	0	0	24	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ARPC4	FP671120.3(1959),FP671120.7(2484)	+/+	./+	3:9792515	21:8252108	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241553	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL929288.1(129026),AL929288.2(5862)	DCDC2C	./.	+/.	1:188665491	2:3703754	intergenic	CDS	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000214866	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC009093.11	FP236383.3	+/.	+/.	16:28724081	21:8397439	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000288630	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TFRC	PPEF1	-/-	+/-	3:196081920	X:18799788	5'UTR	intron	translocation/5'-5'	0	0	0	4	6	low	.	.	.	.	.	ENSG00000072274	ENSG00000086717	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
RNA5SP427(5143),AC007342.2(19305)	MBP(21713),AC100863.1(24710)	./.	./.	16:53342714	18:77155396	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394722	21:8394733	intron	intron	duplication/ITD	0	0	0	154	28	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	duplicates(29),low_entropy(1)	.	.	.
B3GAT1	CDX2(8076),URAD(326)	-/-	./-	11:134384047	13:27977391	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000109956	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
HDGFL2	TPTEP2-CSNK1E	+/.	-/.	19:4491279	22:38313621	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000167674	ENSG00000283900	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
LIN52(32941),VSX2(5273)	CREBBP	./.	-/.	14:74234176	16:3880474	intergenic	5'UTR	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000005339	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU1-51P(30737),FRG1-DT(23940)	CLIP3	./.	-/.	4:189740451	19:36026173	intergenic	CDS	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000105270	.	.	upstream	downstream	mismatches(1)	.	.	.
LITAF	PUDP	-/.	-/.	16:11631386	X:6744688	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000189067	ENSG00000130021	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
NGB	NGB	-/.	-/.	14:77269727	14:77269742	intron	intron	duplication/ITD	0	0	0	87	81	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PAX3	ABHD2	-/.	+/.	2:222298765	15:89133591	5'UTR	intron	translocation	0	0	0	17	3	low	.	.	.	.	.	ENSG00000135903	ENSG00000140526	.	.	downstream	downstream	homopolymer(1)	.	.	.
PNOC	FP671120.4	+/.	+/.	8:28332986	21:8218870	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168081	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479894	intron	intron	translocation	0	0	0	144	2216	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
MIR4300HG	FXNP1(22683),NRXN3(87412)	-/.	./.	11:82143174	14:78082961	intron	intergenic	translocation	0	0	0	1095	424	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
PDGFC	FP236383.3	-/.	+/.	4:156862368	21:8398430	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145431	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079776.5	LINC00511	+/+	-/-	2:129878108	17:72537262	exon	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	ENSG00000286957	ENSG00000227036	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
RBFOX1	MT-RNR2	+/.	+/.	16:7172383	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000078328	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
GDA	C10orf143	+/.	-/.	9:72149977	10:130103977	intron	intron	translocation	0	0	0	0	49	low	.	.	.	.	.	ENSG00000119125	ENSG00000237489	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
FP236383.3	RPSAP68(44963),CR381572.2(31591)	+/.	./.	21:8397817	21:8648947	intron	intergenic	duplication	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC073529.1	AC073529.1	-/.	-/.	X:11077774	X:11077783	intron	intron	duplication/ITD	0	0	0	26	26	low	.	.	.	.	.	ENSG00000234129	ENSG00000234129	.	.	upstream	downstream	duplicates(2),low_entropy(7)	.	.	.
AL356131.1(332831),MTRNR2L9(186)	TMEM120B	./.	+/.	6:61574142	12:121782557	intergenic	exon	translocation	0	0	0	65	0	low	.	.	.	.	.	.	ENSG00000188735	.	.	upstream	upstream	mismatches(1)	.	.	.
AL449106.1	AL390879.1	-/-	+/+	1:178725055	X:137012288	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273062	ENSG00000234062	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ZIC5	ATP11C	-/.	-/.	13:99971192	X:139852457	CDS	intron	translocation	0	0	0	12	1	low	.	.	.	.	.	ENSG00000139800	ENSG00000101974	.	.	downstream	upstream	mismatches	.	.	.
REV1(210),AFF3(55174)	AC009299.2	./.	-/.	2:99490245	2:161239359	intergenic	intron	duplication	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000235724	.	.	upstream	downstream	mismatches(1)	.	.	.
TSPOAP1-AS1	FP671120.4	+/.	+/.	17:58385557	21:8213338	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000265148	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC005229.5	AC087888.1(50124),AC093027.1(171596)	-/.	./.	7:148605538	12:84500002	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000287636	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683459	15:81683470	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(2)	.	.	.
SLC10A2(244616),AL162717.1(32627)	SLC10A2(244631),AL162717.1(32612)	./.	./.	13:103311033	13:103311048	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AL033384.1	FP236383.3	+/.	+/.	6:53961499	21:8401909	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236740	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8209833	21:8214789	intron	intron	inversion/3'-3'	0	0	0	48	5263	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
FP671120.5(77670),FP671120.4(16244)	FP236383.3	./.	+/.	21:8181376	21:8395069	intergenic	intron	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AC079760.2	EPB41L3	+/.	-/.	7:91493507	18:5568113	exon	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000243144	ENSG00000082397	.	.	upstream	downstream	mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392806	1:90392815	intron	intron	duplication/ITD	0	0	0	312	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	duplicates(13),low_entropy(3)	.	.	.
NAGPA-AS1	FP236383.3	+/+	+/+	16:5011163	21:8397817	exon	intron	translocation	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000267072	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
CFAP58	AP001823.1(3434),ELMOD1(754)	+/.	./.	10:104396370	11:107590337	intron	intergenic	translocation	0	0	0	558	1909	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
AC078980.1	AC004946.1(2692),KCND2(43270)	+/.	./.	3:109700824	7:120229905	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	.	.	.	upstream	upstream	mismatches(2)	.	.	.
ST13P7(72603),EXOC4(9956)	ST13P7(72616),EXOC4(9943)	./.	./.	7:133243117	7:133243130	intergenic	intergenic	duplication/ITD	0	0	0	24	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),low_entropy(3)	.	.	.
CBLB(204073),AC131237.1(86792)	FP236383.3	./.	+/.	3:106073625	21:8397915	intergenic	intron	translocation	0	0	0	0	79	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
LBH	LBH	+/.	+/.	2:30304937	2:30304952	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000213626	ENSG00000213626	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
PSME2P2(14117),AL161421.1(189023)	PSME2P2(14132),AL161421.1(189008)	./.	./.	13:48785944	13:48785959	intergenic	intergenic	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
RAMP3(65698),AC073968.2(16681)	TMEM120B	./.	+/.	7:45252000	12:121782557	intergenic	exon	translocation	0	0	0	87	0	low	.	.	.	.	.	.	ENSG00000188735	.	.	upstream	upstream	mismatches(1)	.	.	.
GCNT1	DLG2	+/.	-/.	9:76571859	11:85484195	intron	intron	translocation	0	0	0	38	279	low	.	.	.	.	.	ENSG00000187210	ENSG00000150672	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL358292.1(65136),AL352955.1(196842)	AL358292.1(65178),AL352955.1(196800)	./.	./.	14:87054261	14:87054303	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	10:80511712	10:80511727	intron	intron	duplication/ITD	0	0	0	17	11	low	.	.	.	.	.	ENSG00000108219	ENSG00000108219	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
DHFR	DLG2	-/.	-/.	5:80650927	11:85484197	intron	intron	translocation	0	0	0	81	279	low	.	.	.	.	.	ENSG00000228716	ENSG00000150672	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021158	11:41021213	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
UGT3A2	UGT3A2	-/.	-/.	5:36067823	5:36067838	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000168671	ENSG00000168671	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	SLC23A2	./.	-/.	5:36444163	20:4867701	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000089057	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
INO80C(70101),GALNT1(13037)	INO80C(70165),GALNT1(12973)	./.	./.	18:35568080	18:35568144	intergenic	intergenic	duplication/ITD	0	0	0	6	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
MTRR(12527),AC025174.1(5740)	GPC5	./.	+/.	5:7918552	13:91695714	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000179399	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NRIP3	NTRK1	-/-	+/+	11:9003963	1:156849597	5'UTR	intron	translocation	0	0	0	0	4	low	.	.	|Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(100%)	.	.	ENSG00000175352	ENSG00000198400	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	AC125611.4	-/.	-/.	11:85484190	12:49319361	intron	intron	translocation/5'-5'	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000258334	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP236383.11(1898),FP236383.6(558)	./.	./.	21:8255893	21:8464696	intergenic	intergenic	inversion	0	0	0	143	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NBPF12	FP671120.4	+/.	+/.	1:146992619	21:8214396	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000268043	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LRP1B	FP671120.4	-/.	+/.	2:141137947	21:8214803	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000168702	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18120),CXCR2(16588)	ANXA11	./.	-/.	2:218108701	10:80168261	intergenic	intron	translocation	0	0	0	193	4	low	.	.	.	.	.	.	ENSG00000122359	.	.	downstream	downstream	mismatches(1)	.	.	.
ERC2	CPSF1	-/.	-/.	3:55815739	8:144395085	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000187672	ENSG00000071894	.	.	downstream	downstream	mismatches(1)	.	.	.
ACTN2	ATP9B(2396),NFATC1(15173)	+/.	./.	1:236693579	18:79380683	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000077522	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023347.1(105257),YWHAZP2(108186)	FP236383.3	./.	+/.	2:126449249	21:8389581	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005258.1	RPL12P4(19716),LINC01440(314042)	+/.	./.	19:2338920	20:55094856	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000273734	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PM20D1	ARHGAP15	-/.	+/.	1:205836422	2:143162904	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162877	ENSG00000075884	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AMD1P1(55145),AL590032.1(140926)	RBFOX3	./.	-/.	10:20406245	17:79134875	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000167281	.	.	upstream	upstream	mismatches(1)	.	.	.
NTN1	NTN1	+/.	+/.	17:9166160	17:9166170	intron	intron	duplication/ITD	0	0	0	289	233	low	.	.	.	.	.	ENSG00000065320	ENSG00000065320	.	.	upstream	downstream	duplicates(29),low_entropy(2)	.	.	.
CCNT2-AS1	ACMSD	-/.	+/.	2:134845511	2:134845524	intron	intron	duplication/5'-5'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000153086	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
LINC02345	FAM182A(2828),NCOR1P1(13671)	+/.	./.	15:38015664	20:26089745	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000259225	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009303.2	TRAPPC12	+/+	+/-	2:118055017	2:3464664	exon	intron	inversion/3'-3'	0	0	0	24	0	low	.	.	.	.	.	ENSG00000235066	ENSG00000171853	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
U3(104495),GPC1(41725)	AC025183.2(16915),IRX4(608)	./.	./.	2:240393938	5:1876805	intergenic	intergenic	translocation	0	0	0	357	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01971(8009),ACTG1(20392)	AP001599.1	./.	+/.	17:81489579	21:26914103	intergenic	intron	translocation	0	0	0	1	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
ZCCHC24	AC079772.1	-/-	+/-	10:79445389	4:33652320	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000165424	ENSG00000288321	.	.	upstream	downstream	mismatches(1)	.	.	.
CCNT2-AS1	ACMSD	-/.	+/.	2:134845510	2:134845525	intron	intron	duplication/5'-5'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000153086	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
ACMSD	CCNT2-AS1	+/.	-/.	2:134845510	2:134845525	intron	intron	duplication/3'-3'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000224043	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
NAV1	IPO9-AS1	+/.	-/.	1:201702676	1:201702687	intron	intron	duplication/3'-3'	0	0	0	6	6	low	.	.	.	.	.	ENSG00000134369	ENSG00000231871	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL356131.1(332830),MTRNR2L9(187)	FP236383.3	./.	+/.	6:61574141	21:8441571	intergenic	intron	translocation	0	0	0	65	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ABCC1	5_8S_rRNA(2086),FP236383.3(121624)	+/.	./.	16:16038749	21:8259019	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000103222	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4502),AP001994.1(77179)	+/.	./.	10:104396370	11:119744125	intron	intergenic	translocation	0	0	0	558	3002	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
AL161449.2	FP671120.4	-/.	+/.	9:13024587	21:8214783	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000285637	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
AP005242.4(3763),AP005242.2(6977)	AP005242.4(3778),AP005242.2(6962)	./.	./.	18:14996998	18:14997013	intergenic	intergenic	duplication/ITD	0	0	0	25	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(5)	.	.	.
BICC1	TEDC1	+/.	+/.	10:58688002	14:105493962	intron	intron	translocation/5'-5'	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000185347	.	.	downstream	downstream	duplicates(1),homopolymer(2)	.	.	.
AC099520.1	AL353740.1(47898),LINC02661(98826)	-/.	./.	5:104886945	10:108609713	exon	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000251574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL139090.1	FP236383.3	+/.	+/.	6:88378478	21:8397817	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000286871	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
APBB2	AL023882.1	-/.	+/.	4:41029014	16:1045659	intron	intergenic	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163697	ENSG00000287855	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ERI3	DLG4	-/.	-/.	1:44320098	17:7190625	intron	3'UTR	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000132535	.	.	downstream	downstream	mismatches(1)	.	.	.
Y_RNA(35990),ASXL2(575)	PLAGL1(20798),SF3B5(9487)	./.	./.	2:25733178	6:144085397	intergenic	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL110292.1	FP236383.3	+/.	+/.	14:27207779	21:8442048	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000258081	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
UTS2(32674),TNFRSF9(29685)	SPATA17	./.	+/.	1:7886186	1:217737592	intergenic	intron	inversion	0	0	0	19	0	low	.	.	.	.	.	.	ENSG00000162814	.	.	downstream	downstream	mismatches(1)	.	.	.
NDUFAF4(8228),RN7SL509P(8580)	BPNT2(74953),RNA5SP266(57835)	./.	./.	6:96906119	8:57068820	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC52A1	5_8S_rRNA(2079),FP236383.3(121631)	-/.	./.	17:5035640	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000132517	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
CD200R1L(24730),CD200R1(49619)	SNX29	./.	+/.	3:112871586	16:12280243	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000048471	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	TCF20	./.	-/.	6:144085397	22:42268577	intergenic	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	.	ENSG00000100207	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NAV1	AC091182.1(10752),AC091182.2(62696)	+/.	./.	1:201648773	8:37342743	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134369	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262469	6:42262482	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
AC025183.2(16914),IRX4(609)	NRXN3	./.	+/.	5:1876804	14:79517086	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000021645	.	.	downstream	upstream	mismatches(1)	.	.	.
TENM2	FP671120.4	+/.	+/.	5:168236204	21:8210273	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000145934	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683456	15:81683469	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AL449106.1	AC104117.3	-/-	+/+	1:178725055	5:178973133	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	ENSG00000254035	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AKR1B1P6(39769),RAB12(22851)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	18:8586586	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(4)	.	.	.
AC128676.1(537858),RNU6-417P(197927)	FP236383.3	./.	+/.	7:62813536	21:8400584	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216052	21:8438948	intron	intron	deletion/read-through	0	0	0	0	139	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	CFAP47	./.	+/.	14:100612119	X:36051359	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000165164	.	.	upstream	downstream	mismatches(1)	.	.	.
MAGI1	MAGI1	-/.	-/.	3:65812432	3:65812469	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000151276	ENSG00000151276	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
ARHGAP6	ARHGAP6	-/.	-/.	X:11354267	X:11354328	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000047648	ENSG00000047648	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AL136441.1	AC012060.1(92676),LINC02248(36443)	-/.	./.	13:76652644	15:26358594	intron	intergenic	translocation	0	0	0	3	71	low	.	.	.	.	.	ENSG00000285572	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
HTRA3	GLP2R	+/.	+/.	4:8306667	17:9862138	3'UTR	intron	translocation/3'-3'	0	0	0	0	28	low	.	.	.	.	.	ENSG00000170801	ENSG00000065325	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104389.5	FP236383.3	-/.	+/.	11:5254841	21:8399949	3'UTR	intron	translocation/3'-3'	0	0	0	0	205	low	.	.	.	.	.	ENSG00000239920	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP002852.1	DDB2	+/.	+/.	8:102538345	11:47233103	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000253633	ENSG00000134574	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
FP671120.3(3892),FP671120.7(551)	FP236383.3	./.	+/.	21:8254041	21:8397824	intergenic	intron	inversion	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96618106	21:8441654	5'UTR	intron	translocation/3'-3'	0	0	0	75	546	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
AKR1B1P6(39769),RAB12(22851)	FP236383.3	./.	+/.	18:8586586	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(4)	.	.	.
GLI3	FP236383.3	-/.	+/.	7:42206674	21:8442047	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000106571	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
NBPF12	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	1:146992619	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000268043	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00271	DNTT	+/.	+/.	6:135650950	10:96333569	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000231028	ENSG00000107447	.	.	downstream	downstream	mismatches(2)	.	.	.
LINC02745	RN7SKP263(6593),AC123567.1(124437)	-/.	./.	11:42090408	12:94015640	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255300	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP000721.1	FP671120.4	+/.	+/.	11:63978519	21:8214782	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000256100	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AL157703.1(33023),RPL4P5(100466)	SF1	./.	-/.	9:7376579	11:64778077	intergenic	CDS	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000168066	.	.	downstream	downstream	mismatches(1)	.	.	.
FOXO6(65590),RNA5SP45(17757)	ACSL6	./.	-/.	1:41449180	5:132011045	intergenic	intron	translocation	0	0	0	1	7	low	.	.	.	.	.	.	ENSG00000164398	.	.	upstream	downstream	mismatches	.	.	.
TYRO3(16299),AC016134.1(9569)	TYRO3(16366),AC016134.1(9502)	./.	./.	15:41599888	15:41599955	intergenic	intergenic	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(5),merge_adjacent	.	.	.
SSH1	AP003120.1(26482),GRM5(49918),GRM5-AS1(49918)	-/-	./-	12:108811325	11:88454658	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000084112	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RHOBTB1	5_8S_rRNA(1685),FP236383.3(122025)	-/.	./.	10:60901773	21:8258618	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000072422	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
PDS5A	WBP4	-/.	+/.	4:39875787	13:41062047	intron	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	ENSG00000120688	.	.	downstream	upstream	mismatches(1)	.	.	.
JAK1	FP236383.3	-/.	+/.	1:64848252	21:8442058	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000162434	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MEIKIN	CFAP58	-/.	+/.	5:131885420	10:104396370	intron	intron	translocation/3'-3'	0	0	0	60	558	low	.	.	.	.	.	ENSG00000239642	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
IQCF5-AS1(8192),IQCF1(10917)	DDB2	./.	+/.	3:51883959	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	duplicates(1)	.	.	.
ELAVL4	SLC5A11	+/.	+/.	1:50115885	16:24883973	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000162374	ENSG00000158865	.	.	upstream	downstream	mismatches(1)	.	.	.
AL589986.2	GDI2	+/.	-/.	1:152206896	10:5812961	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236427	ENSG00000057608	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009035.1(259588),C16orf82(77993)	AP001599.1	./.	+/.	16:26988714	21:26914103	intergenic	intron	translocation	0	0	0	14	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC10A6	RUFY4(18122),CXCR2(16586)	-/-	./-	4:86848790	2:218108703	CDS	intergenic	translocation	0	0	0	0	193	low	.	.	Sodium_Bile_acid_symporter_family(40%)|	.	.	ENSG00000145283	.	.	.	upstream	downstream	duplicates(3),homopolymer(2)	.	.	.
ZNF462	LINC02620	+/.	-/.	9:106864120	10:104479908	intron	intron	translocation	0	0	0	39	1761	low	.	.	.	.	.	ENSG00000148143	ENSG00000225768	.	.	downstream	downstream	low_entropy	.	.	.
DMD	DMD	-/.	-/.	X:31138625	X:31138640	intron	intron	duplication/ITD	0	0	0	22	0	low	.	.	.	.	.	ENSG00000198947	ENSG00000198947	.	.	upstream	downstream	duplicates(4),low_entropy(9)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8397818	MT:1971	intron	exon	translocation/3'-3'	0	0	0	6042	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01381(6973),DNMT3A(11680)	LETM1	./.	-/.	2:25216175	4:1841522	intergenic	CDS	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
AC091182.1(10752),AC091182.2(62696)	SMTNL2	./.	+/.	8:37342743	17:4597969	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188176	.	.	upstream	upstream	mismatches(1)	.	.	.
CHRNB3	ST18	+/.	-/.	8:42737004	8:52136559	3'UTR	intron	inversion	0	0	0	0	2	low	.	.	.	.	.	ENSG00000147432	ENSG00000147488	.	.	upstream	upstream	mismatches(1)	.	.	.
PCAT1	PCAT1	+/.	+/.	8:126750636	8:126750647	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000253438	ENSG00000253438	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ST18	IRF2BPL	-/.	-/.	8:52136559	14:77026792	intron	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000147488	ENSG00000119669	.	.	upstream	downstream	mismatches(1)	.	.	.
PAX3	FP236383.3	-/.	+/.	2:222298765	21:8394743	5'UTR	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135903	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
ROBO1	AC013489.2(9289),LINC01586(7715)	-/.	./.	3:79166519	15:88577851	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169855	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC017091.1	TLE4	-/.	+/.	4:58783793	9:79572888	intron	intron	translocation/5'-5'	0	0	0	12	12	low	.	.	.	.	.	ENSG00000251339	ENSG00000106829	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
DUSP22	CLEC11A	+/.	+/.	6:334171	19:50725294	intron	CDS	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000112679	ENSG00000105472	.	.	downstream	upstream	mismatches(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275721	13:49275795	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
KYNU(33029),ARHGAP15(2500)	WAC(10352),RNU4ATAC6P(19166)	./.	./.	2:143088862	10:28633464	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM184A	WDR13	-/.	+/.	7:1547185	X:48597824	intron	5'UTR	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000164855	ENSG00000101940	.	.	downstream	upstream	mismatches(1)	.	.	.
AC159540.1(2072),IGKV1OR2-9(15914)	FP236383.3	./.	+/.	2:97306223	21:8397821	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TBXT	SQSTM1P1(123821),AL445668.1(8614)	-/.	./.	6:166166388	13:62530737	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164458	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
KLHDC3	WDR13	+/+	+/+	6:43017165	X:48597821	5'UTR	5'UTR	translocation	0	0	0	0	0	low	.	.	|WD_domain__G-beta_repeat(100%)	.	.	ENSG00000124702	ENSG00000101940	.	.	downstream	upstream	mismatches(1)	.	.	.
KMT2C	GGT7	-/.	-/.	7:152384544	20:34845156	intron	3'UTR	translocation	0	0	0	177	75	low	.	.	.	.	.	ENSG00000055609	ENSG00000131067	.	.	upstream	downstream	mismatches	.	.	.
THEMIS	RHOXF1P2	-/.	-/.	6:127729140	X:119999806	intron	intron	translocation/5'-5'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000172673	ENSG00000282850	.	.	upstream	upstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214782	21:8442063	intron	intron	duplication	0	0	0	5263	6003	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(2),homopolymer(2)	.	.	.
ATP9B(2396),NFATC1(15173)	WDR13	./.	+/.	18:79380683	X:48597821	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101940	.	.	upstream	upstream	mismatches(1)	.	.	.
KPNA4	AC105252.1(292285),AC079380.1(3753)	-/.	./.	3:160554562	4:133867493	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000186432	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ATP9B(2396),NFATC1(15173)	RNU6-974P(265647),EIF3JP1(230695)	./.	./.	18:79380683	X:82266974	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ATP13A2	WDR13	-/-	+/+	1:16986667	X:48597821	exon	5'UTR	translocation	0	0	0	0	0	low	.	.	E1-E2_ATPase(100%),P5-type_ATPase_cation_transporter(100%),haloacid_dehalogenase-like_hydrolase(100%)|WD_domain__G-beta_repeat(100%)	.	.	ENSG00000159363	ENSG00000101940	.	.	upstream	upstream	mismatches(1)	.	.	.
MON1B	LINC00906(4019),RNA5SP470(26777)	+/+	./+	16:77194711	19:28974893	CDS	intergenic	translocation	0	0	0	10	0	low	.	.	First_Longin_domain_of_FUZ__MON1_and_HPS1(100%),Second_Longin_domain_of_FUZ__MON1_and_HPS1(8%)|	.	.	ENSG00000103111	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DENND2B	FP671120.4	-/.	+/.	11:8868036	21:8217537	intron	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000166444	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SMYD2	ZKSCAN2	+/.	-/.	1:214335680	16:25243202	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143499	ENSG00000155592	.	.	downstream	upstream	mismatches(1)	.	.	.
SORCS3	SORCS3	+/.	+/.	10:104794599	10:104794659	intron	intron	duplication/ITD	0	0	0	13	12	low	.	.	.	.	.	ENSG00000156395	ENSG00000156395	.	.	upstream	downstream	low_entropy(6)	.	.	.
COPS8(14606),AC107079.1(7830)	SEMA6B(16478),AC011498.5(22940)	./.	./.	2:237115080	19:4598254	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
STAC	ZHX3	+/.	-/.	3:36520328	20:41240541	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000144681	ENSG00000174306	.	.	downstream	downstream	mismatches(1)	.	.	.
AL445931.1	SBF1	+/+	-/+	9:134058145	22:50468212	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000235138	ENSG00000100241	.	.	downstream	upstream	mismatches(1)	.	.	.
KIAA2012-AS1	CDK9	-/.	+/.	2:202083777	9:127786322	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000222035	ENSG00000136807	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.3(3892),FP671120.7(551)	FP236383.3	./.	+/.	21:8254041	21:8442054	intergenic	intron	inversion	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
NOTCH4	BICC1	-/-	+/-	6:32195778	10:58688003	CDS	intron	translocation/5'-5'	0	0	0	1	87	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Calcium-binding_EGF_domain(100%),EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),LNR_domain(100%),NOTCH_protein(100%)|	.	.	ENSG00000204301	ENSG00000122870	.	.	upstream	downstream	homopolymer(1)	.	.	.
LINC01205	SLC12A7(55922),CTD-3080P12.3(5156)	+/.	./.	3:109700822	5:1167985	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	.	.	.	upstream	downstream	mismatches(2)	.	.	.
TBC1D16	GRK3	-/-	+/+	17:79945067	22:25696065	CDS	intron	translocation	0	0	0	0	0	low	.	.	Rab-GTPase-TBC_domain(69%)|PH_domain(100%),Protein_kinase_domain(25%)	.	.	ENSG00000167291	ENSG00000100077	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RN7SKP263(6593),AC123567.1(124437)	MT-RNR2	./.	+/.	12:94015640	MT:2714	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	duplicates(4),uninteresting_contigs(1)	.	.	.
RPSAP24(19185),OLA1(9382)	VAV2	./.	-/.	2:174063065	9:133801530	intergenic	intron	translocation	0	0	0	1	9	low	.	.	.	.	.	.	ENSG00000160293	.	.	downstream	downstream	mismatches(1)	.	.	.
TMC4	AP003066.1	-/-	+/-	19:54168416	11:96955789	exon	intron	translocation/5'-5'	0	0	0	4	12	low	.	.	.	.	.	ENSG00000167608	ENSG00000254587	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
MED27	AC010319.2	-/.	-/.	9:131863536	19:17456610	intron	intron	translocation/3'-3'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000160563	ENSG00000269035	.	.	downstream	downstream	mismatches(1)	.	.	.
TENT2	RNU6-728P(25111),PLEKHA1(3792)	+/.	./.	5:79670611	10:122370904	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164329	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DAG1	AC010319.2	+/+	-/-	3:49470279	19:17456613	5'UTR	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000173402	ENSG00000269035	.	.	downstream	downstream	mismatches(1)	.	.	.
DLGAP2	FP671120.4	+/.	+/.	8:837041	21:8214784	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000198010	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ATF4P4	ARHGAP27	+/.	-/.	11:113789588	17:45432470	exon	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000256167	ENSG00000159314	.	.	upstream	upstream	mismatches(1)	.	.	.
LILRA1	LINC01399	+/+	-/+	19:54601090	22:35143066	3'UTR	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	ENSG00000233080	.	.	downstream	upstream	mismatches(1)	.	.	.
DAG1	NXNL1	+/+	-/-	3:49470279	19:17456613	5'UTR	intron	translocation	0	0	0	0	3	low	.	.	|Thioredoxin-like(23%)	.	.	ENSG00000173402	ENSG00000171773	.	.	downstream	downstream	mismatches(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	8:73820108	21:8397434	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000104343	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
AL390778.2(33289),C9orf62(57252)	FP236383.3	./.	+/.	9:135285997	21:8442052	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	PAK4	./.	+/.	5:23949377	19:39167546	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000130669	.	.	downstream	upstream	homopolymer(1)	.	.	.
ARMC8	DHFR	+/.	-/.	3:138207249	5:80651213	intron	intron	translocation	0	0	0	0	128	low	.	.	.	.	.	ENSG00000114098	ENSG00000228716	.	.	downstream	downstream	duplicates(3),mismatches(2)	.	.	.
KBTBD12	CEACAM7	+/.	-/.	3:127976381	19:41687372	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000187715	ENSG00000007306	.	.	downstream	downstream	mismatches(1)	.	.	.
SEMA3D(156673),DYNLL1P7(37590)	MYH9	./.	-/.	7:85343528	22:36360030	intergenic	intron	translocation	0	0	0	64	6	low	.	.	.	.	.	.	ENSG00000100345	.	.	upstream	upstream	mismatches	.	.	.
RPS24P8(33048),TMEM158(31243)	ROBO1	./.	-/.	3:45193223	3:79598030	intergenic	intron	duplication	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000169855	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
GNAI2	NXNL1	+/.	-/.	3:50252438	19:17456613	CDS	intron	translocation/3'-3'	0	0	0	1	3	low	.	.	.	.	.	ENSG00000114353	ENSG00000171773	.	.	upstream	downstream	mismatches(1)	.	.	.
JDP2(35661),BATF(12683)	MT-RNR2	./.	+/.	14:75509772	MT:2440	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RUFY4(18122),CXCR2(16586)	SFMBT2	./.	-/.	2:218108703	10:7400845	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000198879	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC097462.3	CFAP58	-/.	+/.	4:127548321	10:104396444	intron	intron	translocation/5'-5'	0	0	0	1	554	low	.	.	.	.	.	ENSG00000287021	ENSG00000120051	.	.	upstream	downstream	low_entropy	.	.	.
NRIP3	KLHL42	-/-	+/-	11:9003964	12:27798054	5'UTR	CDS	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000087448	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CENPC(6847),STAP1(6377)	5_8S_rRNA(2090),FP236383.3(121620)	./.	./.	4:67552350	21:8259023	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC034213.1	AC104389.5	+/.	-/.	5:180442272	11:5655645	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000250509	ENSG00000239920	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
SNX1	TSPOAP1-AS1	+/.	+/.	15:64095912	17:58385557	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000028528	ENSG00000265148	.	.	upstream	downstream	mismatches(1)	.	.	.
KIAA2012	AC114811.1(10021),BTF3P13(16750)	+/.	./.	2:202083777	4:98723992	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC122694.1(3539264),EMB(960958)	RCAN2	./.	-/.	5:49435234	6:46469323	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172348	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC097473.1(2068),RCC2P8(12657)	LRAT	./.	+/.	4:108776088	4:154635455	intergenic	intron	deletion	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000121207	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02444	FP671120.4	+/.	+/.	12:73182054	21:8214396	intron	intron	translocation	0	0	0	3	540	low	.	.	.	.	.	ENSG00000258123	ENSG00000278996	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
KIAA2012-AS1	AC114811.1(10021),BTF3P13(16750)	-/.	./.	2:202083777	4:98723992	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GDNF	FP671120.4	-/.	+/.	5:37834632	21:8214783	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000168621	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
KIF5C	IFT46	+/.	-/.	2:148881811	11:118566325	intron	intron	translocation	0	0	0	4	9	low	.	.	.	.	.	ENSG00000168280	ENSG00000118096	.	.	downstream	downstream	mismatches(1)	.	.	.
COL25A1	PSD3	-/.	-/.	4:108946347	8:18596655	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188517	ENSG00000156011	.	.	upstream	upstream	mismatches(1)	.	.	.
Y_RNA(62868),Y_RNA(80967)	KIAA2012-AS1	./.	-/.	1:184234691	2:202083777	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000222035	.	.	upstream	downstream	mismatches(1)	.	.	.
MYRIP	MT-RNR2	+/.	+/.	3:40252687	MT:2442	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000170011	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SLC12A8	ADD3	-/.	+/.	3:125150511	10:110073069	intron	intron	translocation/3'-3'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	ENSG00000148700	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAPRE1P2(93918),AC093606.1(44662)	XRCC6P2(65223),MAMLD1(63303)	./.	./.	4:33105664	X:150298119	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ABHD17B	NTRK3-AS1(144206),MRPL46(44205)	-/.	./.	9:71904276	15:88415272	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000107362	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SHE	FP236383.3	-/.	+/.	1:154469819	21:8398131	3'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169291	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022826.2	PPP2R3B	-/.	-/.	8:73820102	X:370878	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000167393	.	.	upstream	downstream	mismatches(1)	.	.	.
KIAA2012	LRGUK	+/.	+/.	2:202083777	7:134172870	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000155530	.	.	downstream	upstream	mismatches(1)	.	.	.
IGFBP7-AS1	RN7SL167P(47384),AP002856.3(135209)	+/.	./.	4:57146805	11:131051813	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000245067	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SKP278(217494),RNU5B-6P(26130)	NPAS3	./.	+/.	10:109158804	14:33799874	intergenic	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	.	ENSG00000151322	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
AC093725.2(49326),AC093725.1(11909)	NHSL2	./.	+/.	4:57708126	X:72037628	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000204131	.	.	upstream	upstream	mismatches(1)	.	.	.
KIAA2012-AS1	LRGUK	-/.	+/.	2:202083777	7:134172870	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000155530	.	.	downstream	upstream	mismatches(1)	.	.	.
AC108037.1(159605),LINC02270(144152)	AC009997.1(47927),NEDD4(32228)	./.	./.	4:12079293	15:55794694	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683470	15:81683479	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC02036	TSPOAP1-AS1	-/.	+/.	3:194204601	17:58385558	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225742	ENSG00000265148	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4(3814),FP671120.10(3894)	FP236383.3	./.	+/.	21:8231460	21:8398665	intergenic	intron	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(5),mismatches(5)	.	.	.
RBM46(191467),AC097467.3(153436)	LRR1	./.	+/.	4:155020280	14:49599727	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165501	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
KIAA2012-AS1	CTBP2	-/.	-/.	2:202083777	10:124992995	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000175029	.	.	downstream	downstream	mismatches(1)	.	.	.
ITPRID1	IDH3G	+/.	-/.	7:31553097	X:153786768	CDS	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000180347	ENSG00000067829	.	.	upstream	upstream	mismatches(1)	.	.	.
INF2	AL118557.1(10756),PTGDR(100763)	+/+	./+	14:104715045	14:52166935	3'UTR	intergenic	duplication	0	0	0	0	2	low	.	.	Diaphanous_FH3_Domain(100%),Diaphanous_GTPase-binding_Domain(100%),Formin_Homology_2_Domain(100%),WH2_motif(100%)|	.	.	ENSG00000203485	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF496	FBXW5	-/.	-/.	1:247323508	9:136943086	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000162714	ENSG00000159069	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDH18	AP001599.1	-/.	+/.	5:20271009	21:26914102	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000145526	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
C7orf50(7980),ZFAND2A(5831)	SIM2	./.	+/.	7:1146240	21:36720283	intergenic	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000159263	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4502),AP001994.1(77179)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744125	14:78082967	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC01060	SQSTM1P1(123822),AL445668.1(8613)	+/.	./.	4:188533877	13:62530738	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	.	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
Y_RNA(62868),Y_RNA(80967)	TMC4(94),MBOAT7(68)	./.	./.	1:184234691	19:54173344	intergenic	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GBP7	TMC4(94),MBOAT7(68)	-/.	./.	1:89154926	19:54173344	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000213512	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SHISA6	SYNDIG1	+/.	+/.	17:11337251	20:24469667	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188803	ENSG00000101463	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRGUK	TMC4(94),MBOAT7(68)	+/.	./.	7:134172870	19:54173344	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000155530	.	.	.	upstream	downstream	mismatches(1)	.	.	.
C7orf33	PRKY	+/.	+/.	7:148605538	Y:7287970	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000170279	ENSG00000099725	.	.	upstream	downstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	7:116638063	7:116638076	intron	intron	duplication/ITD	0	0	0	63	0	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
SP100	RAD51B	+/.	+/.	2:230450042	14:67975619	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000067066	ENSG00000182185	.	.	downstream	downstream	mismatches(1)	.	.	.
PCAT7	LIMD1	+/+	+/+	9:94555270	3:45593628	exon	intron	translocation	0	0	0	0	0	low	.	.	|LIM_domain(100%)	.	.	ENSG00000231806	ENSG00000144791	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLAIN1	DLX4(13690),DLX3(1356)	+/.	./.	13:77698624	17:49988649	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000139737	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PDS5A	H3-5(8699),RNU6-1069P(1961)	-/.	./.	4:39875783	12:31800997	intron	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC35A4	LINC00486	+/+	+/-	5:140567237	2:32916539	CDS	intron	translocation/5'-5'	0	0	0	6	48	low	.	.	Domain_of_unknown_function_(DUF4535)(100%)|	.	.	ENSG00000176087	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
LINC00358(156256),LINC01075(26749)	NPAS3	./.	+/.	13:62185828	14:33799874	intergenic	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	.	ENSG00000151322	.	.	upstream	upstream	duplicates(5),mismatches(1)	.	.	.
RPL6P21(23501),DGKB(50168)	AC024941.1(326724),LINC02458(81762)	./.	./.	7:14094881	12:88928919	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL451042.1(2729),ARHGEF19-AS1(33242),ARHGEF19(33242)	DHRS2(46906),AL160237.1(7252)	./.	./.	1:16164612	14:23692545	intergenic	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MCF2L	TMC4(91),MBOAT7(71)	+/.	./.	13:113065912	19:54173341	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000126217	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CTB-178M22.2	FP671120.4	-/.	+/.	5:168236204	21:8210273	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000253978	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MFF-DT	AC008269.1	-/-	+/-	2:227268528	2:206862123	exon	intron	deletion/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236432	ENSG00000229321	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC009303.2	NPTX2(23043),RNU6-393P(141806)	+/+	./+	2:118055017	7:98652912	exon	intergenic	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000235066	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC026786.1	FP236383.3	+/.	+/.	12:133131392	21:8397819	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000256825	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092266.1(110147),LSINCT5(340421)	GRIN2B	./.	-/.	5:2372170	12:13586517	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000273079	.	.	downstream	downstream	mismatches(1)	.	.	.
GRPEL1(289),LINC02447(25423)	AC024236.1(13448),AC007322.2(11162)	./.	./.	4:7068353	Y:21860169	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ROBO2(144776),RNU6-217P(17001)	FP236383.3	./.	+/.	3:77794740	21:8399899	intergenic	intron	translocation	0	0	0	4	19	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR3649(9042),ADIPOR2(19152)	FP236383.3	./.	+/.	12:1669422	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GCNT1	FP236383.3	+/.	+/.	9:76571859	21:8444603	intron	intron	translocation/3'-3'	0	0	0	38	0	low	.	.	.	.	.	ENSG00000187210	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RAMP3(65696),AC073968.2(16683)	FP671120.4	./.	+/.	7:45251998	21:8214314	intergenic	intron	translocation	0	0	0	87	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003066.1	ALOX15(16236),PELP1(11244)	+/.	./.	11:96955789	17:4658530	intron	intergenic	translocation	0	0	0	12	5	low	.	.	.	.	.	ENSG00000254587	.	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
LINC01558	FMN1	-/.	-/.	6:167796658	15:32839930	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146521	ENSG00000248905	.	.	downstream	upstream	mismatches(1)	.	.	.
NAT16(7906),MOGAT3(6808)	HPS4	./.	-/.	7:101188199	22:26478281	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100099	.	.	downstream	upstream	mismatches(1)	.	.	.
AC027612.2	FP671120.4	-/.	+/.	2:91686309	21:8214713	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000230572	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02173(48821),AC092445.1(23131)	CHST15	./.	-/.	4:106502270	10:124092271	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000182022	.	.	downstream	downstream	mismatches(1)	.	.	.
LSAMP	AC008014.1	-/.	+/.	3:116788511	12:46639334	intron	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	ENSG00000185565	ENSG00000257261	.	.	upstream	upstream	duplicates(5),mismatches(2)	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262572	intron	intron	translocation	0	0	0	144	2136	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
FBXW5	LINC02246	-/.	-/.	9:136943086	21:14845957	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	ENSG00000281903	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNAH14	AP003390.1(4498),AP001994.1(77183)	+/.	./.	1:225078862	11:119744121	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
LHFPL6(5812),COG6(46287)	HYDIN	./.	-/.	13:39609340	16:71158143	intergenic	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	.	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
TNIK	RGS22	-/.	-/.	3:171458323	8:100083273	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154310	ENSG00000132554	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SFN(3785),GPN2(7891)	SFN(3838),GPN2(7838)	./.	./.	1:26868241	1:26868294	intergenic	intergenic	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
IQCH	FP236383.3	+/.	+/.	15:67310424	21:8433768	intron	intron	translocation/3'-3'	0	0	0	40	0	low	.	.	.	.	.	ENSG00000103599	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K5	AC008035.1	-/-	+/+	14:50542515	12:46639334	5'UTR	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	ENSG00000012983	ENSG00000272369	.	.	upstream	upstream	duplicates(5),mismatches(2)	.	.	.
HMCN1	AC108037.1(159604),LINC02270(144153)	+/.	./.	1:186010335	4:12079292	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000143341	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MIB2	HBB	+/+	-/-	1:1625668	11:5225537	exon	3'UTR	translocation	0	0	0	3	91	low	.	.	Mib_herc2(100%),Mind_bomb_SH3_repeat_domain(49%),Zinc_finger__ZZ_type(100%)|	.	.	ENSG00000197530	ENSG00000244734	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
EEF1B2P2(28127),LINC02219(1856)	AP000721.2	./.	+/.	5:68188020	11:64038954	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000256824	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC077690.1(10581),LMCD1-AS1(150200)	FP236383.3	./.	+/.	3:7801063	21:8397829	intergenic	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105252.1(292284),AC079380.1(3754)	AL008720.2(3043),Z72006.1(67220)	./.	./.	4:133867492	22:48336242	intergenic	intergenic	translocation	0	0	0	11	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AMER2	AL009048.1(155070),AC016925.1(54026)	-/.	./.	13:25171819	X:147746979	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165566	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS18P6(259148),MTHFD2P1(222898)	DLG2	./.	-/.	3:95431525	11:85484188	intergenic	intron	translocation	0	0	0	45	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	duplicates(21),mismatches(17)	.	.	.
CDH13	GNL3L	+/.	+/.	16:83451977	X:54578320	intron	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	ENSG00000140945	ENSG00000130119	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KCNAB2	TUBBP11(353348),RAP1BP2(78779)	+/.	./.	1:6071890	3:103984260	intron	intergenic	translocation	0	0	0	0	83	low	.	.	.	.	.	ENSG00000069424	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	HMCN2	-/.	+/.	5:80651216	9:130363494	intron	intron	translocation	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000148357	.	.	downstream	downstream	duplicates(6),mismatches(1)	.	.	.
GAU1	AC005833.1	-/.	+/.	12:4702127	12:4702202	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255639	.	.	upstream	downstream	duplicates(1)	.	.	.
OOSP1P1(14384),AL035417.1(2821)	PLXNA4	./.	-/.	1:44169685	7:132611063	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000221866	.	.	upstream	upstream	mismatches(1)	.	.	.
RHOBTB1	DLG2	-/.	-/.	10:60901773	11:85484187	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000072422	ENSG00000150672	.	.	upstream	upstream	homopolymer(1)	.	.	.
U3(104494),GPC1(41726)	KPNA4	./.	-/.	2:240393937	3:160554562	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000186432	.	.	upstream	upstream	mismatches(2)	.	.	.
TAB2(11978),ZC3H12D(23204)	TAB2(11987),ZC3H12D(23195)	./.	./.	6:149423591	6:149423600	intergenic	intergenic	duplication/ITD	0	0	0	86	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
CAMK1G	GAPDHP16(18527),AF127577.4(25054)	+/.	./.	1:209590483	21:14793789	intron	intergenic	translocation	0	0	0	1	5	low	.	.	.	.	.	ENSG00000008118	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01731	LINC02620	-/.	-/.	1:148280011	10:104479913	intron	intron	translocation	0	0	0	55	1761	low	.	.	.	.	.	ENSG00000234283	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AC123767.1	LINC02741	+/.	-/.	8:39562837	11:41542521	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000254067	ENSG00000255388	.	.	downstream	downstream	mismatches(1)	.	.	.
KIF5C-AS1	IFT46	-/.	-/.	2:148881811	11:118566325	intron	intron	translocation/3'-3'	0	0	0	4	9	low	.	.	.	.	.	ENSG00000231079	ENSG00000118096	.	.	downstream	downstream	mismatches(1)	.	.	.
EXD2	PHKG2	+/.	+/.	14:69236367	16:30749087	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000081177	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL445675.2(34540),AL603825.1(49662)	DDB2	./.	+/.	1:242925343	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4364),AP001994.1(77317)	AP003390.1(4379),AP001994.1(77302)	./.	./.	11:119743987	11:119744002	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(4),merge_adjacent	.	.	.
CAMK1G	NAALADL2	+/.	+/.	1:209590483	3:175349066	intron	intron	translocation/5'-5'	0	0	0	1	4	low	.	.	.	.	.	ENSG00000008118	ENSG00000177694	.	.	downstream	downstream	mismatches(1)	.	.	.
FP700111.1	AC026396.1(48615),AL731533.1(24920)	+/.	./.	1:144803151	10:2985056	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000224363	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MGA	FP236383.3	+/.	+/.	15:41660249	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000174197	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
HECW1	TFAP2C(6163),RNU6-1146P(21984)	+/.	./.	7:43466999	20:56645446	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000002746	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BAIAP3	FP671120.4	+/.	+/.	16:1334643	21:8214784	5'UTR	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000007516	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAFA	SUPT5H	-/-	+/+	8:143429787	19:39458232	CDS	exon	translocation	0	0	0	0	24	low	.	.	Maf_N-terminal_region(100%)|Early_transcription_elongation_factor_of_RNA_pol_II__NGN_section(100%),KOW_motif(100%),Spt5_transcription_elongation_factor__acidic_N-terminal(71%)	.	.	ENSG00000182759	ENSG00000196235	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP004606.1	AP004606.1	+/.	+/.	11:133544832	11:133544841	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000287068	ENSG00000287068	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
RPL6P21(23500),DGKB(50169)	OR8I1P(17),OR8K3(17656)	./.	./.	7:14094880	11:56297488	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.7	CDH12	-/-	-/+	21:8254797	5:22323469	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281383	ENSG00000154162	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8215043	21:8397823	intron	intron	inversion/3'-3'	0	1	0	0	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
AC099541.1(116907),AC009743.1(73802)	RUNX1	./.	-/.	3:41088485	21:35550073	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000159216	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL449106.1	AC122694.1(4465580),EMB(34642)	-/-	./-	1:178725055	5:50361550	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
TFCP2L1	PABPC3	-/.	+/.	2:121239617	13:24940989	CDS	intergenic	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000115112	ENSG00000151846	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KLF1	AP001599.1	-/.	+/.	19:12886456	21:26914102	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000105610	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
FRMD8	KLF13	+/.	+/.	11:65394796	15:31429085	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000126391	ENSG00000169926	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IFI30	AL445466.1(192393),LINC02817(3466)	+/+	./-	19:18174835	1:221326614	exon	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000216490	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL392086.1	ARHGEF6	+/.	-/.	10:6788934	X:136675361	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000285845	ENSG00000129675	.	.	downstream	downstream	mismatches(1)	.	.	.
AL512638.2(11092),ELOCP20(64162)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	1:115492664	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AL078459.1	AL445466.1(192393),LINC02817(3466)	+/.	./.	1:85324233	1:221326614	intron	intergenic	inversion	0	0	0	1	11	low	.	.	.	.	.	ENSG00000223653	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC109583.1	ARHGEF7(5084),TEX29(5363)	-/.	./.	3:46755085	13:111310821	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000206549	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC068473.3	5_8S_rRNA(2802),FP236383.3(120908)	+/.	./.	18:79577928	21:8259735	exon	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000267287	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PGBD2	LINC02264(150412),NDST3(13246)	+/.	./.	1:248906244	4:118020372	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185220	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EXD2	AC106886.2	+/.	+/.	14:69236367	16:30749072	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000081177	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC104777.1	RAB40B(13392),AC024361.2(1818)	-/.	./.	2:150617538	17:82712090	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DDAH1	AL445466.1(192393),LINC02817(3466)	-/.	./.	1:85324233	1:221326614	intron	intergenic	inversion	0	0	0	1	11	low	.	.	.	.	.	ENSG00000153904	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00271	PRUNE2	+/.	-/.	6:135653248	9:76808399	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000231028	ENSG00000106772	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAX5	FP671120.4	-/.	+/.	9:36881659	21:8216918	intron	intron	translocation/3'-3'	0	0	0	0	116	low	.	.	.	.	.	ENSG00000196092	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC024587.1	MKRN3	+/+	+/+	5:107725998	15:23566256	exon	CDS	translocation	0	0	0	0	2	low	.	.	|E3_ubiquitin-protein_ligase_makorin__C-terminal(100%),RNA-binding__Nab2-type_zinc_finger(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	ENSG00000248827	ENSG00000179455	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KIAA2012-AS1	ALG13	-/.	+/.	2:202083777	X:111681864	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000222035	ENSG00000101901	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ERMARD	MED27(46981),NTNG2(34828)	+/.	./.	6:169762980	9:132126848	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130023	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214795	21:8437074	intron	intron	inversion/3'-3'	0	0	0	5263	55	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL445466.1(192393),LINC02817(3466)	EXOC3L1	./.	-/.	1:221326614	16:67184946	intergenic	CDS	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000179044	.	.	downstream	downstream	mismatches(1)	.	.	.
NET1(22871),CALML5(16770)	RNA5SP433(31657),WFDC1(261)	./.	./.	10:5481927	16:84294585	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
USP24	SPECC1L	-/.	+/.	1:55122262	22:24299649	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162402	ENSG00000100014	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01799(52502),AC007403.1(16582)	LIN52(32941),VSX2(5273)	./.	./.	2:67023964	14:74234176	intergenic	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3(5332),FP236383.11(2196)	+/.	./.	21:8211687	21:8460124	intron	intergenic	inversion	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ARHGAP30	AP000255.1(48404),TPT1P1(55530)	-/.	./.	1:161059767	21:31784811	intron	intergenic	translocation	0	0	0	31	90	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
AC015845.2	AC015845.2	-/.	-/.	17:57797729	17:57797802	intron	intron	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	ENSG00000265542	ENSG00000265542	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC008014.1(15861),AC079906.1(77859)	LSM14B	./.	+/.	12:46892645	20:62131771	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
THEMIS	AC018697.1	-/.	+/.	6:127735530	18:24849900	intron	intron	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	ENSG00000266573	.	.	downstream	downstream	mismatches(2)	.	.	.
ZNF24(8360),ZNF396(12852)	FP236383.3	./.	+/.	18:35353842	21:8400583	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC084759.3	AC093627.22	+/+	-/+	15:53910829	7:117610	exon	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000280362	ENSG00000287883	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
THEMIS	BRK1P2(18863),LINC00380(44437)	-/.	./.	6:127735531	13:91042817	intron	intergenic	translocation	0	0	0	33	1	low	.	.	.	.	.	ENSG00000172673	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626665	X:18626676	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
FLG-AS1	TOX2	+/.	+/.	1:152381055	20:43916153	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000237975	ENSG00000124191	.	.	upstream	upstream	mismatches(1)	.	.	.
NXF2(27555),AC235565.2(6118)	NXF2(27646),AC235565.2(6027)	./.	./.	X:102354277	X:102354368	intergenic	intergenic	duplication/ITD	0	0	0	0	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
CDK12	CDK12	+/.	+/.	17:39481626	17:39481717	intron	intron	duplication/ITD	0	0	0	34	34	low	.	.	.	.	.	ENSG00000167258	ENSG00000167258	.	.	upstream	downstream	low_entropy(3)	.	.	.
ZNF496	SLC28A1	-/.	+/.	1:247323510	15:84908598	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000162714	ENSG00000156222	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01219	FP236383.3	+/.	+/.	11:1991349	21:8397825	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000232987	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2W	CEMIP2(21730),ABHD17B(24032)	-/.	./.	8:73820101	9:71838420	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
THEMIS	MT-RNR2	-/.	+/.	6:127735530	MT:1960	intron	exon	translocation/3'-3'	0	0	0	33	.	low	.	.	.	.	.	ENSG00000172673	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TTLL3	CRIM1	+/+	+/+	3:9809808	2:36356457	5'UTR	CDS	translocation	0	0	0	52	0	low	.	.	|Antistasin_family(100%),Insulin-like_growth_factor_binding_protein(65%),von_Willebrand_factor_type_C_domain(100%)	.	.	ENSG00000214021	ENSG00000150938	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ANKRD30BL	5_8S_rRNA(2076),FP236383.3(121634)	-/.	./.	2:132255984	21:8259009	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000163046	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
LINC02629(156849),PARD3(34907)	RNA5SP478(5509),AL118508.1(12792)	./.	./.	10:34074653	20:23166480	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L8	NAA11	-/-	-/-	11:10508380	4:79311395	5'UTR	intron	translocation	0	0	0	70	6	low	.	.	.	.	.	ENSG00000255823	ENSG00000156269	.	.	upstream	downstream	mismatches	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051995	1:161059767	intron	intron	duplication	0	0	0	97	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
NRIP3	RGS17(21613),RNA5SP224(6325)	-/-	./-	11:9003964	6:153152895	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DAAM1(45879),GPR135(11738)	DAAM1(45894),GPR135(11723)	./.	./.	14:59417284	14:59417299	intergenic	intergenic	duplication/ITD	0	0	0	10	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
CYP51A1P1(505971),AC023503.1(70453)	FP236383.3	./.	+/.	3:83313992	21:8389581	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	FP671120.4	./.	+/.	8:17155256	21:8209831	intergenic	intron	translocation	0	0	0	0	48	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
NALCN-AS1	IQCH	+/.	+/.	13:100887372	15:67310425	intron	intron	translocation	0	0	0	2	40	low	.	.	.	.	.	ENSG00000233009	ENSG00000103599	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
ACAP3	GLP2R	-/.	+/.	1:1298529	17:9862138	intron	intron	translocation/3'-3'	0	0	0	0	28	low	.	.	.	.	.	ENSG00000131584	ENSG00000065325	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
MCU	AL390334.1(278),BNIP3P1(418826)	+/.	./.	10:72886173	14:27845564	3'UTR	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000156026	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL592447.1(172816),AL929288.1(93044)	MT-RNR2	./.	+/.	1:188415494	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC008837.2(60704),CRLF3P2(292294)	AC019117.1	./.	-/.	5:99656001	7:17532333	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000236039	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
ITPRID1(8816),PPP1R17(19679)	UMOD(1738),PDILT(1136)	./.	./.	7:31667536	16:20358039	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PABPC3	AC011525.1(16696),RNA5SP471(42940)	+/.	./.	13:24940989	19:31612416	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000151846	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRAM1L1(78295),AC107399.1(86053)	FP236383.3	./.	+/.	4:117163871	21:8389581	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AFAP1	CSNK1A1L(19442),AL356274.1(14070)	-/.	./.	4:7841621	13:37125106	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000196526	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC080079.2	AL591468.1(1337),LINC02528(38166)	-/.	./.	4:165670763	6:137904913	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000287424	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL133304.3	FP671120.3(594),FP671120.7(3849)	+/.	./.	14:36002552	21:8250743	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258342	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC018467.1(70378),AC012506.1(61230)	HIGD1AP18(175977),AC062004.1(209067)	./.	./.	2:23269434	8:77190005	intergenic	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479902	X:133661638	intron	intron	translocation/3'-3'	0	0	0	1761	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
TAFA5	MT-RNR2	+/.	+/.	22:48741205	MT:2451	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000219438	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC127496.7	AC021218.1(39544),Y_RNA(180235)	+/+	./-	17:81004368	7:156005887	exon	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000280351	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AASS	FP671120.4	-/.	+/.	7:122096894	21:8206534	intron	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000008311	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
MYT1L(85626),AC018685.2(220888)	5_8S_rRNA(2096),FP236383.3(121614)	./.	./.	2:2417290	21:8259029	intergenic	intergenic	translocation	0	0	0	12	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
LINC02123(10555),AC027343.1(3753)	RALGDS	./.	-/.	5:7359226	9:133148048	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000160271	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	LINC01500	-/.	+/.	7:117610	14:59014165	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000258583	.	.	upstream	downstream	mismatches(1)	.	.	.
TBC1D8	TBC1D8	-/.	-/.	2:101134165	2:101134198	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000204634	ENSG00000204634	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785685	intron	intron	translocation	0	0	0	144	496	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
CDK11B	LRRC55(22110),APLNR(19750)	-/.	./.	1:1642227	11:57213827	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000248333	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02261(3855),IGBP1P5(299065)	SLCO5A1	./.	-/.	4:27286080	8:69690369	intergenic	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	.	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
ANKLE2	LMX1B	-/-	+/-	12:132760606	9:126671248	exon	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000176915	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	14:99796188	14:99796201	intron	intron	duplication/ITD	0	0	0	348	348	low	.	.	.	.	.	ENSG00000066629	ENSG00000066629	.	.	upstream	downstream	duplicates(4),low_entropy(4),merge_adjacent	.	.	.
MLLT10(12025),DNAJC1(893)	AC027369.4	./.	+/.	10:21755655	11:48897757	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000254920	.	.	downstream	upstream	mismatches(1)	.	.	.
CLCN1	OR6D1P(28871),OR13A1(10175)	+/.	./.	7:143342344	10:45292123	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000188037	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
FP671120.4	UPRT	+/.	+/.	21:8214801	X:75223386	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000094841	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
LINC02686(2278),Y_RNA(191415)	HIPK3	./.	+/.	11:24264496	11:33258157	intergenic	intron	duplication	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000110422	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
PARD3	HYDIN	-/.	-/.	10:34185451	16:71158143	intron	intron	translocation/3'-3'	0	0	0	0	54	low	.	.	.	.	.	ENSG00000148498	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
WWC1	AL592164.2(64835),AC092198.1(30022)	+/.	./.	5:168337914	X:39979254	intron	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000113645	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC26A8	FZD1(15252),AC079760.2(24790)	-/.	./.	6:35961170	7:91286578	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112053	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DDX60L	SMG1	-/.	-/.	4:168397246	16:18892387	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000181381	ENSG00000157106	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683470	15:81683479	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
MIR4300HG	AP003390.1(4394),AP001994.1(77287)	-/.	./.	11:82143175	11:119744017	intron	intergenic	deletion	0	0	0	1095	3458	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
URI1	5_8S_rRNA(2080),FP236383.3(121630)	+/.	./.	19:30010965	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000105176	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ZBTB38	WDR62(1882),OVOL3(4161)	+/.	./.	3:141434401	19:36106990	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000177311	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC097654.1	MKI67(20675),LINC01163(33934)	-/.	./.	4:32012522	10:128147098	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286212	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF536(14653),AC011507.1(122784)	FP671120.4	./.	+/.	19:30728191	21:8214782	intergenic	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
AL606489.1	DYSF(13936),RPS20P10(283478)	+/.	./.	1:204412056	2:71700704	intron	intergenic	translocation	0	0	0	3	2	low	.	.	.	.	.	ENSG00000226330	.	.	.	upstream	downstream	mismatches	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749076	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01205	LINC02752	+/.	+/.	3:109700822	11:11036667	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000254401	.	.	upstream	downstream	mismatches(1)	.	.	.
HYDIN2	MYO5BP3(4745),CDK2AP2P3(7301)	+/.	./.	1:146551982	9:63767569	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TMEM244(9398),L3MBTL3(142754)	CDH22	./.	-/.	6:129870945	20:46288008	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000149654	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
GLYATL1	FP671120.4	+/.	+/.	11:58919736	21:8214784	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000166840	ENSG00000278996	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
AC079193.1(4367),ZDHHC2(1227)	LINC01987(117073),LINC01973(31698)	./.	./.	8:17155255	17:77845632	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NTRK2	EPB41L1	+/.	+/.	9:84975073	20:36154970	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148053	ENSG00000088367	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079313.2	HYDIN	+/.	-/.	12:54484308	16:71158143	intron	intron	translocation/3'-3'	0	0	0	0	54	low	.	.	.	.	.	ENSG00000258137	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117366	10:113117379	intron	intron	duplication/ITD	0	0	0	307	4	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(8),low_entropy(7)	.	.	.
AC009093.1	KRT18P53(61509),SHOX(17483)	-/.	./.	16:29218554	X:606861	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259807	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC23A1	5_8S_rRNA(2079),FP236383.3(121631)	-/.	./.	5:139376762	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000170482	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
SH3GL1P1	ARHGAP27	+/.	-/.	17:32040756	17:45432470	exon	intron	inversion	0	0	0	0	2	low	.	.	.	.	.	ENSG00000266777	ENSG00000159314	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS7P4(20662),COX6B1P7(18671)	LINC02419(47604),AC026336.4(1636)	./.	./.	1:68263717	12:130120289	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HYDIN2	AC079313.2	+/.	+/.	1:146551982	12:54484308	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000258137	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
OBP2A	FP671120.4	+/.	+/.	9:135549378	21:8214784	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000122136	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ATN1	SLC4A10	+/+	+/+	12:6934280	2:161899878	CDS	intron	translocation	0	0	0	0	2	low	.	.	Atrophin-1_family(4%)|HCO3-_transporter_family(100%)	.	.	ENSG00000111676	ENSG00000144290	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008164.1(68612),AC008069.1(15641)	B3GAT1-DT	./.	+/.	2:16838179	11:134501046	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000255545	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022826.2	IQCH-AS1	-/.	-/.	8:73820121	15:67310431	intron	intron	translocation	0	0	0	164	40	low	.	.	.	.	.	ENSG00000258677	ENSG00000259673	.	.	downstream	upstream	mismatches(2)	.	.	.
SLAMF6P1(2318),UHMK1(48367)	TMC4(94),MBOAT7(68)	./.	./.	1:162448884	19:54173344	intergenic	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP700111.1	FP671120.4	+/.	+/.	1:144689684	21:8214713	intron	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	.	.	.	ENSG00000224363	ENSG00000278996	.	.	downstream	downstream	mismatches(1)	.	.	.
SH3PXD2A	MYO5A	-/.	-/.	10:103760680	15:52419502	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000107957	ENSG00000197535	.	.	downstream	downstream	mismatches(1)	.	.	.
HYDIN2	TFDP2	+/.	-/.	1:146551982	3:142005397	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000114126	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MFSD1	RORA	+/.	-/.	3:158750074	15:61158248	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000118855	ENSG00000069667	.	.	upstream	upstream	mismatches(1)	.	.	.
LIN7A	HYDIN	-/.	-/.	12:80891221	16:71158143	intron	intron	translocation/3'-3'	0	0	0	0	54	low	.	.	.	.	.	ENSG00000111052	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL358335.2	ZNF592(4828),ALPK3(6083)	-/.	./.	14:48480992	15:84811273	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000258751	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HYDIN2	EPB41L4A	+/.	-/.	1:146551982	5:112318357	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	ENSG00000129595	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
WDFY3	WDFY3	-/.	-/.	4:84695488	4:84695553	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000163625	ENSG00000163625	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
SLC6A12	CDYL2	-/.	-/.	12:199333	16:80655814	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111181	ENSG00000166446	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
PDZPH1P	AC025580.2	-/.	+/.	5:103482858	15:45462156	intron	intron	translocation/5'-5'	0	0	0	67	28	low	.	.	.	.	.	ENSG00000226926	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC022826.2	FP236383.3	-/.	+/.	8:73820101	21:8444603	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000280441	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
AC106793.1	AC106793.1	+/.	+/.	16:58830257	16:58830318	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000245768	ENSG00000245768	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
HYDIN2	AC061709.2(20923),AC061709.1(32088)	+/.	./.	1:146551982	12:128212418	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
NRIP3	AC114321.1(205466),AC026403.1(21400)	-/-	./-	11:9003964	5:166360905	5'UTR	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC114485.1(140803),AC099567.1(232889)	SDK1	./.	+/.	1:102530433	7:3678622	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000146555	.	.	upstream	downstream	mismatches(1)	.	.	.
AGRN	AL121895.1	+/.	-/.	1:1041773	20:36154970	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000232406	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM74(47705),AC104248.1(35829)	5_8S_rRNA(2079),FP236383.3(121631)	./.	./.	8:108835299	21:8259012	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
PRKCZ	FP671120.4	+/.	+/.	1:2178891	21:8214796	intron	intron	translocation	0	0	0	2	5263	low	.	.	.	.	.	ENSG00000067606	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BBS9	LINC01068(56234),AL136442.1(9754)	+/.	./.	7:33425896	13:79627679	intron	intergenic	translocation	0	0	0	62	1	low	.	.	.	.	.	ENSG00000122507	.	.	.	upstream	downstream	duplicates(1),mismatches(3)	.	.	.
AC022826.2	DLG2	-/.	-/.	8:73820101	11:85484195	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000258677	ENSG00000150672	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL139220.2	AL139220.2	+/.	+/.	1:44069463	1:44069513	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000230615	ENSG00000230615	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARHGAP30	PHKG2	-/.	+/.	1:161059767	16:30749075	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000156873	.	.	downstream	downstream	low_entropy(1)	.	.	.
MAML3	ZNF211	-/.	+/.	4:139867859	19:57633012	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000196782	ENSG00000121417	.	.	downstream	downstream	mismatches(1)	.	.	.
TFDP2	HYDIN	-/.	-/.	3:142005397	16:71158143	intron	intron	translocation/3'-3'	0	0	0	0	54	low	.	.	.	.	.	ENSG00000114126	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL157371.1(67422),AL109615.3(75968)	DIP2A(27616),S100B(973)	./.	./.	6:43919755	21:46597631	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ABHD14A	KRT8P27(3760),GRPEL2P2(69545)	+/+	./+	3:51973857	X:64628333	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000248487	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AL159163.1	CABIN1	-/.	+/.	6:166893131	22:24067426	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249141	ENSG00000099991	.	.	downstream	upstream	mismatches(1)	.	.	.
RHOQ	RBM46(191467),AC097467.3(153436)	+/.	./.	2:46542783	4:155020280	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
KIAA2012-AS1	FBXW5	-/.	-/.	2:202083776	9:136943086	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000159069	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRAT	CLEC18C(3475),AC009060.2(11518)	+/.	./.	4:154635455	16:70190836	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000121207	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	AF064860.1	-/.	+/.	10:104479904	21:39679803	intron	intron	translocation/3'-3'	0	0	0	1761	34	low	.	.	.	.	.	ENSG00000225768	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
GSDME	AL163974.1(22793),LINC00523(45131)	-/.	./.	7:24728025	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000105928	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C5orf46(4778),EEF1GP2(10863)	THRAP3P2(6690),SLCO3A1(103063)	./.	./.	5:147911316	15:91750645	intergenic	intergenic	translocation	0	0	0	1	21	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211687	21:8420287	intron	intron	inversion/3'-3'	0	0	0	136	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CYP3A4	TMEM198B	-/.	+/.	7:99782042	12:55832665	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000160868	ENSG00000182796	.	.	upstream	downstream	mismatches(1)	.	.	.
YWHAZ	5_8S_rRNA(2087),FP236383.3(121623)	-/.	./.	8:100917286	21:8259020	3'UTR	intergenic	translocation	0	0	0	5	5911	low	.	.	.	.	.	ENSG00000164924	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SPRY1	PLEKHG1	+/.	+/.	4:123397737	6:150839396	5'UTR	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000164056	ENSG00000120278	.	.	upstream	upstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683459	15:81683470	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(2)	.	.	.
ZNF536(14653),AC011507.1(122784)	5_8S_rRNA(2078),FP236383.3(121632)	./.	./.	19:30728191	21:8259011	intergenic	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
KCNAB2	KDM4B	+/.	+/.	1:6035979	19:5020573	exon	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000127663	.	.	upstream	upstream	mismatches(1)	.	.	.
ERN2	FP236383.3	-/.	+/.	16:23702061	21:8397815	intron	intron	translocation/3'-3'	0	0	0	8	6042	low	.	.	.	.	.	ENSG00000134398	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
ARPC4	FP236383.3	+/+	+/+	3:9792515	21:8390946	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000241553	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DSCAM	MTRNR2L10(829),PAGE5(37075)	-/.	./.	21:40448839	X:55183271	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171587	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02612	SLC25A6	+/.	-/.	2:150617538	X:1389097	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000169100	.	.	upstream	upstream	mismatches(1)	.	.	.
AMY1C(8016),AL136455.1(159861)	HMGB3P23(424799),RNA5SP281(223599)	./.	./.	1:103766706	9:32069959	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FBRSL1	FP236383.3	+/.	+/.	12:132524117	21:8442065	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000112787	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
RN7SKP293(3300),RPL15P3(104029)	DLG2	./.	-/.	6:12410081	11:85484188	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
CSPG5	AC091182.1(10752),AC091182.2(62696)	-/.	./.	3:47578845	8:37342743	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000114646	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PLOD1	PTCSC2	+/.	-/.	1:11955057	9:97773399	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000083444	ENSG00000236130	.	.	upstream	downstream	mismatches(1)	.	.	.
AL139042.1	FP671120.4	-/.	+/.	6:88378478	21:8214783	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000234426	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
VEGFC	MT-RNR2	-/.	+/.	4:176779158	MT:2441	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000150630	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC092674.1	TMC3-AS1	-/.	+/.	4:77492334	15:81373299	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000249036	ENSG00000259343	.	.	upstream	downstream	mismatches(1)	.	.	.
FNDC3B	THRAP3P2(6690),SLCO3A1(103063)	+/.	./.	3:172359018	15:91750645	intron	intergenic	translocation	0	0	0	128	21	low	.	.	.	.	.	ENSG00000075420	.	.	.	downstream	upstream	mismatches	.	.	.
CARF	NRP1	+/+	-/-	2:202987261	10:33334709	3'UTR	5'UTR	translocation	0	0	0	0	21	low	.	.	Amyotrophic_lateral_sclerosis_2_chromosomal_region_candidate_gene_8(100%)|C-terminal_domain_of_neuropilin_glycoprotein(100%),CUB_domain(100%),F5/8_type_C_domain(100%),MAM_domain__meprin/A5/mu(100%)	.	.	ENSG00000138380	ENSG00000099250	.	.	downstream	downstream	mismatches(1)	.	.	.
B4GALT4-AS1	POLRMT	+/.	-/.	3:119280652	19:632544	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000240254	ENSG00000099821	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
DEFB121(2947),DEFB122(5651)	MT-RNR2	./.	+/.	20:31415785	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
ARMC8	MT-RNR1	+/.	+/.	3:138207249	MT:1505	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000114098	ENSG00000211459	.	.	downstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
FP236383.3	Y_RNA(5794),MAP7D2(15760)	+/.	./.	21:8399905	X:19990953	intron	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL29(29556),AC115284.3(21312)	AL590229.1(36894),Z96811.1(241885)	./.	./.	3:52025451	X:87183698	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PRICKLE2-AS3	FP236383.3	+/.	+/.	3:64188277	21:8442064	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000226017	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
MIR4713HG	DANT2	+/.	-/.	15:51184193	X:115696176	intron	intron	translocation/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000259240	ENSG00000235244	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023347.1(105258),YWHAZP2(108185)	DENND3	./.	+/.	2:126449250	8:141129023	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000105339	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	AC087457.1(6995),TUBAP11(28637)	-/.	./.	5:80651213	15:34820500	intron	intergenic	translocation	0	0	0	128	0	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
DPH6-DT	FP236383.3	+/.	+/.	15:35727914	21:8397834	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000248079	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
U3(104497),GPC1(41723)	NEDD9	./.	-/.	2:240393940	6:11350828	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000111859	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02235	AP003390.1(4493),AP001994.1(77188)	+/.	./.	8:81842439	11:119744116	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
AC093627.22	GSE1	-/.	+/.	7:117610	16:85176724	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000287883	ENSG00000131149	.	.	upstream	downstream	mismatches(1)	.	.	.
RNU6-755P(166192),LMX1A(55538)	MRPL13	./.	-/.	1:165146329	8:120418520	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000172172	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	H2BW2(9537),H2BW3P(10551)	+/.	./.	21:8442064	X:104051991	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	ZIC5	+/.	-/.	2:32916309	13:99971192	intron	CDS	translocation/3'-3'	0	0	0	92	12	low	.	.	.	.	.	ENSG00000230876	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
AC008060.3	AC091182.1(10767),AC091182.2(62681)	-/.	./.	7:155433499	8:37342758	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236544	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01121	LINC01121	-/.	-/.	2:45297823	2:45297889	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000205054	ENSG00000205054	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
H3C10	AC002463.1	+/.	+/.	6:27810927	7:112751480	3'UTR	intron	translocation/3'-3'	0	0	0	0	39	low	.	.	.	.	.	ENSG00000278828	ENSG00000223646	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396541	8:22396550	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CRISP1(19696),DEFB133(49229)	SMIM35	./.	-/.	6:49896792	11:118065485	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255274	.	.	downstream	upstream	mismatches(1)	.	.	.
AC239859.3(831),AC239859.4(10145)	5_8S_rRNA(2003),FP236383.3(121707)	./.	./.	1:143451076	21:8258936	intergenic	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	ZIC5	+/.	-/.	2:32916376	13:99971192	intron	CDS	translocation/3'-3'	0	0	0	57	12	low	.	.	.	.	.	ENSG00000230876	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
NFE2L2	HELQ(45),MRPS18C(32)	-/.	./.	2:177254991	4:83455900	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000116044	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02745	CEACAM21	-/.	+/.	11:42029388	19:41564259	intron	intron	translocation/5'-5'	0	0	0	9	5	low	.	.	.	.	.	ENSG00000255300	ENSG00000007129	.	.	upstream	downstream	mismatches(1)	.	.	.
PPP2CA	STAB1	-/-	+/+	5:134225650	3:52513883	intron	CDS/splice-site	translocation	0	0	0	0	0	low	.	.	|EGF_domain(67%),Extracellular_link_domain(100%),Fasciclin_domain(48%)	.	.	ENSG00000113575	ENSG00000010327	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.6	LINC02150	-/-	-/-	21:8210562	5:16393216	exon	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000280800	ENSG00000248150	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02444	FP236383.3	+/.	+/.	12:73182054	21:8441654	intron	intron	translocation	0	0	0	3	546	low	.	.	.	.	.	ENSG00000258123	ENSG00000280441	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
AC104109.3	LIN52(32937),VSX2(5277)	-/.	./.	5:134225646	14:74234172	intron	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000272772	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL606489.1	ZIC5	+/.	-/.	1:204412056	13:99971192	intron	CDS	translocation/3'-3'	0	0	0	3	12	low	.	.	.	.	.	ENSG00000226330	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
LILRA1	AL451042.1(2729),ARHGEF19-AS1(33242),ARHGEF19(33242)	+/+	./-	19:54601090	1:16164612	3'UTR	intergenic	translocation	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785683	intron	intron	translocation	0	0	0	144	496	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
PTHLH	FP671120.7(393),5_8S_rRNA(874)	-/.	./.	12:27970462	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087494	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SMNDC1(50247),AL355512.1(73655)	FP671120.4	./.	+/.	10:110355185	21:8214790	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC16A11	FP236383.11(1894),FP236383.6(562)	-/-	./+	17:7042731	21:8464692	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	Major_Facilitator_Superfamily(30%)|	.	.	ENSG00000174326	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC12A8	AL357507.1	-/.	+/.	3:125150511	6:74444039	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	ENSG00000223786	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02693	MAPK11	-/-	-/-	17:21551447	22:50270476	exon	intron	translocation	0	0	0	0	0	low	.	.	|Protein_kinase_domain(100%)	.	.	ENSG00000212719	ENSG00000185386	.	.	upstream	downstream	mismatches(1)	.	.	.
AL359834.1(4271),KIF14(63622)	ZIC5	./.	-/.	1:200487875	13:99971192	intergenic	CDS	translocation	0	0	0	1	12	low	.	.	.	.	.	.	ENSG00000139800	.	.	upstream	downstream	mismatches	.	.	.
DSTNP5(45373),AC106901.1(26358)	Y_RNA(9919),GBX2(2145)	./.	./.	2:204352737	2:236163091	intergenic	intergenic	inversion	1	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	min_support	.	.	.
AL445207.1(92957),TXNL1P1(169809)	AC010546.1(235979),AC040174.1(12101)	./.	./.	13:86555691	16:63044685	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
UBE2E2	AL445207.1(92957),TXNL1P1(169809)	+/.	./.	3:23257524	13:86555691	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000182247	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP001599.1	LINC00269(207119),CYCSP43(68300)	+/.	./.	21:26914103	X:69417043	intron	intergenic	translocation	0	0	0	167	0	low	.	.	.	.	.	ENSG00000223563	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SUGCT(37661),LINC01450(66243)	FP236383.3	./.	+/.	7:40898424	21:8397831	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ARL2	RBFOX1	+/.	+/.	11:65014891	16:6222319	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000213465	ENSG00000078328	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092387	intron	intron	translocation/3'-3'	0	0	0	558	1170	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
AL161449.2	FP236383.3	-/.	+/.	9:13024587	21:8397817	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000285637	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479881	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521065	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(8)	.	.	.
AC022826.2	YBX2P2	-/.	-/.	8:73820102	15:93066410	intron	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000258677	ENSG00000258611	.	.	upstream	downstream	mismatches(1)	.	.	.
AC122694.1(3445112),EMB(1055110)	RCAN2	./.	-/.	5:49341082	6:46469324	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172348	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021204	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
NPM1P14(89234),AC002463.1(5536)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	7:112610904	21:8258619	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092352	11:88092445	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL033504.1	AC244102.4	+/.	-/.	6:147790824	X:152576450	intron	intron	translocation/5'-5'	0	0	0	25	7	low	.	.	.	.	.	ENSG00000227681	ENSG00000287394	.	.	downstream	upstream	mismatches	.	.	.
DISC1	TSNAX-DISC1	+/.	+/.	1:231756512	1:231756564	intron	intron	duplication	0	0	0	25	25	low	.	.	.	.	.	ENSG00000162946	ENSG00000270106	.	.	upstream	downstream	duplicates(20),low_entropy(5)	.	.	.
HFM1	TTPA(22952),AC011978.1(27218)	-/.	./.	1:91387408	8:63109005	intron	intergenic	translocation	0	0	0	6	19	low	.	.	.	.	.	ENSG00000162669	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
MCTP1	FRMD5(93309),GOLM2(139)	-/.	./.	5:94947578	15:44288580	intron	intergenic	translocation	0	0	0	15	3	low	.	.	.	.	.	ENSG00000175471	.	.	.	upstream	downstream	mismatches(1)	.	.	.
WAC	AC004687.2	+/+	-/-	10:28533924	17:58385558	5'UTR	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000095787	ENSG00000285897	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TLE4	TBC1D17	+/.	+/.	9:79572888	19:49888367	intron	intron	translocation/5'-5'	0	0	0	12	3	low	.	.	.	.	.	ENSG00000106829	ENSG00000104946	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	IQSEC2	+/.	-/.	21:8397829	X:53306177	intron	intron	translocation/3'-3'	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000124313	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IL1R1	FP671120.4	+/.	+/.	2:102140326	21:8214783	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000115594	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
ZNF536(14653),AC011507.1(122784)	FP236383.3	./.	+/.	19:30728191	21:8442046	intergenic	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
TTLL3	CDH26	+/+	+/+	3:9809808	20:59995749	5'UTR	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000124215	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF876P(12612),AC079140.3(385)	AC006504.5	./.	+/.	4:268597	19:27961840	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000267575	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	RPSAP68(44963),CR381572.2(31591)	+/.	./.	21:8442047	21:8648947	intron	intergenic	duplication	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
RAMP3(65701),AC073968.2(16678)	MTRNR2L5	./.	+/.	7:45252003	10:55599444	intergenic	5'UTR	translocation	0	0	0	71	8	low	.	.	.	.	.	.	ENSG00000249860	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	AL731768.1(245335),SRIP2(139747)	+/.	./.	21:8442064	X:89227688	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	duplicates(2),homopolymer(2)	.	.	.
PLXNA4	LMX1B	-/.	+/.	7:132611063	9:126688022	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000221866	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
KLHL32	AP003066.1	+/.	+/.	6:97100445	11:96847852	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000186231	ENSG00000254587	.	.	upstream	downstream	mismatches(1)	.	.	.
AASDH	EXPH5	-/.	-/.	4:56373512	11:108554922	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157426	ENSG00000110723	.	.	upstream	upstream	mismatches(1)	.	.	.
PPARGC1A(608958),DHX15(4394)	FP671120.4	./.	+/.	4:24513047	21:8214784	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
NFE2L2	FP236383.3	-/.	+/.	2:177254991	21:8441659	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000116044	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FBXL7	FP671120.4	+/.	+/.	5:15866365	21:8214783	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000183580	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
FIGNL2	TBC1D17	-/.	+/.	12:51846740	19:49888370	intron	intron	translocation/5'-5'	0	0	0	4	3	low	.	.	.	.	.	ENSG00000261308	ENSG00000104946	.	.	upstream	downstream	mismatches(1)	.	.	.
IL1R1	FP236383.3	+/.	+/.	2:102140326	21:8397817	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000115594	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP236383.3	UBE2L3	+/.	+/.	21:8444814	22:21613410	intron	intron	translocation	0	0	0	62	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000185651	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479798	10:104479808	intron	intron	duplication/ITD	0	0	0	1798	110	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1)	.	.	.
UBE2W	IQCH	-/.	+/.	8:73820121	15:67310431	intron	intron	translocation/3'-3'	0	0	0	164	40	low	.	.	.	.	.	ENSG00000104343	ENSG00000103599	.	.	downstream	upstream	mismatches(2)	.	.	.
LINC01377(90375),LINC01019(85402)	FAM27E3(3375),FAM27B(3137)	./.	./.	5:3271862	9:67722553	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC096725.1(212598),LINC02494(193847)	XRCC6P2(65223),MAMLD1(63303)	./.	./.	4:58330668	X:150298119	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL28	AP001437.2	+/+	-/+	19:55386172	21:37366265	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108107	ENSG00000287637	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
CR589904.2	SLCO5A1	-/.	-/.	1:248727096	8:69690371	intron	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	ENSG00000286015	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	MAP1LC3BP1(11861),SLC24A2(31067)	./.	./.	8:17155256	9:19476385	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079760.2	FP671120.3(594),FP671120.7(3849)	+/.	./.	7:91494892	21:8250743	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000243144	.	.	.	downstream	upstream	mismatches(1)	.	.	.
URI1	FP236383.3	+/.	+/.	19:30010965	21:8442048	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000105176	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
Z93929.1(11431),MDM4P1(21585)	Z93929.1(11444),MDM4P1(21572)	./.	./.	X:17911764	X:17911777	intergenic	intergenic	duplication/ITD	0	0	0	24	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(9)	.	.	.
AC091167.6	LINC02864	+/.	-/.	15:90270299	18:73168244	intron	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000275674	ENSG00000263711	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNAJC22(8927),SPATS2(111)	SLC24A3	./.	+/.	12:49366473	20:19678641	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000185052	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
PKN2-AS1	5_8S_rRNA(2080),FP236383.3(121630)	-/.	./.	1:87944416	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000237505	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MLYCD	5_8S_rRNA(2091),FP236383.3(121619)	+/+	./+	16:83922178	21:8259024	3'UTR	intergenic	translocation	0	0	0	0	6	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	.	.	.	downstream	upstream	duplicates(1)	.	.	.
RPS2P18(22130),AC092573.1(17577)	AC092573.1	./.	-/.	2:173320642	2:173320655	intergenic	intergenic	duplication	0	0	0	4	1	low	.	.	.	.	.	.	ENSG00000236391	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC022826.2	5_8S_rRNA(1693),FP236383.3(122017)	-/.	./.	8:73820101	21:8258626	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TMEM74(47705),AC104248.1(35829)	FP671120.4	./.	+/.	8:108835299	21:8214783	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
HIVEP2	FP236383.3	-/.	+/.	6:142946392	21:8394741	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CKAP5	Y_RNA(2738),AL359232.1(32437)	-/.	./.	11:46754528	14:66180373	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175216	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PPARGC1A(608958),DHX15(4394)	FP236383.3	./.	+/.	4:24513047	21:8397818	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC22A23(39204),AL033523.1(88847)	AC022826.2	./.	-/.	6:3496254	8:73820119	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000258677	.	.	downstream	downstream	mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262594	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
DDB2	ZC3H13	+/.	-/.	11:47233105	13:46052477	intron	5'UTR	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000123200	.	.	downstream	downstream	mismatches(1)	.	.	.
AC007207.1(30425),CCND2-AS1(99424)	ZNF543(13323),AC005261.2(6755)	./.	./.	12:4148557	19:57344093	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	AC009035.1(259589),C16orf82(77992)	./.	./.	15:26358594	16:26988715	intergenic	intergenic	translocation	0	0	0	71	14	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
RACGAP1	AP001599.1	-/.	+/.	12:49980139	21:26914103	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000161800	ENSG00000223563	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC073349.2	AC015813.5(36050),AC015813.8(6552)	-/.	./.	7:64836200	17:58044237	exon	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000234338	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PABPC3	AC008946.1(34500),CCL25(2242)	+/.	./.	13:24940989	19:8050525	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000151846	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	LINC01919(340427),AC090666.1(171716)	./.	./.	4:25088518	18:53970417	intergenic	intergenic	translocation	0	0	0	68	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683455	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(37),low_entropy(16)	.	.	.
PCDH7	PABPC3	+/.	+/.	4:30722379	13:24940989	CDS	intergenic	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000169851	ENSG00000151846	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTR(59),RPL35P1(60002)	PWWP3A	./.	+/.	1:236921337	19:1366858	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000160953	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
TPTEP1	LARGE1	+/.	-/.	22:16649628	22:33771304	exon	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000100181	ENSG00000133424	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262508	6:42262607	intron	intron	duplication/ITD	0	0	0	2239	1284	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
SLC25A15	LARGE1	+/.	-/.	13:40794524	22:33771303	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000102743	ENSG00000133424	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
WNT5A	5_8S_rRNA(2086),FP236383.3(121624)	-/.	./.	3:55486456	21:8259019	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000114251	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022826.2	FP236383.3	-/.	+/.	8:73820101	21:8441661	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC068722.1(24279),AC068714.1(143845)	FP236383.3	./.	+/.	15:45955348	21:8397816	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
Y_RNA(14915),AC096949.1(35942)	C8orf37-AS1	./.	+/.	1:99806668	8:95219084	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000253773	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139090.1	FP671120.4	+/.	+/.	6:88378478	21:8214783	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000286871	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
SEPTIN8	ABCC4	-/.	-/.	5:132788158	13:95029270	intron	intron	translocation	0	0	0	26	7	low	.	.	.	.	.	ENSG00000164402	ENSG00000125257	.	.	upstream	downstream	low_entropy	.	.	.
ARL2-SNX15	KRT8P27(3758),GRPEL2P2(69547)	+/.	./.	11:65014891	X:64628331	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000273003	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC114485.1(331900),AC099567.1(41792)	AC114485.1(331944),AC099567.1(41748)	./.	./.	1:102721530	1:102721574	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ANO9	LINC02785(56145),SLC25A24(1878)	-/-	./+	11:418030	1:108132165	3'UTR	intergenic	translocation	0	0	0	1	0	low	.	.	Calcium-activated_chloride_channel(100%)|	.	.	ENSG00000185101	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262472	6:42262483	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1)	.	.	.
TTLL3	TNXB	+/+	-/-	3:9809808	6:32097169	5'UTR	CDS	translocation	0	0	0	52	0	low	.	.	|EGF-like_domain(72%),Fibrinogen_beta_and_gamma_chains__C-terminal_globular_domain(100%),Fibronectin_type_III_domain(100%),Tenascin_EGF_domain(100%)	.	.	ENSG00000214021	ENSG00000168477	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23082),AC108865.1(141165)	AC104109.3	./.	-/.	4:186749804	5:134225646	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000272772	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	PCMTD1	-/-	-/+	3:96618090	8:51864075	5'UTR	intron	translocation/5'-5'	0	0	0	80	4	low	.	.	.	.	.	ENSG00000269028	ENSG00000168300	.	.	upstream	upstream	mismatches	.	.	.
NDEL1	SYS1-DBNDD2	+/.	+/.	17:8463508	20:45407986	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000166579	ENSG00000254806	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139090.1	FP236383.3	+/.	+/.	6:88378478	21:8442047	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000286871	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
NAALADL2	FP236383.3	+/.	+/.	3:175349066	21:8441653	intron	intron	translocation	0	0	0	4	546	low	.	.	.	.	.	ENSG00000177694	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC128709.3(26250),LINC02012(11907)	GPC5	./.	+/.	3:197493355	13:91695714	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000179399	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	7:116638064	7:116638077	intron	intron	duplication/ITD	0	0	0	63	0	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01882	MT-RNR2	-/.	+/.	18:12767063	MT:2230	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000260302	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	FJX1(30126),AL138812.1(5703)	./.	./.	3:35255769	11:35650991	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
H1-2(25919),HFE(4892)	OR8D4(17939),OR4D5(12375)	./.	./.	6:26082389	11:123927168	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TARBP1	AC084337.2	-/.	+/.	1:234397784	11:6496218	intron	intron	translocation/3'-3'	0	0	0	0	101	low	.	.	.	.	.	ENSG00000059588	ENSG00000283977	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC067942.2(17103),LINC00575(12487)	FP236383.3	./.	+/.	4:82598487	21:8397819	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00293	MT-RNR2	+/.	+/.	8:46829753	MT:2439	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000253314	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1369656	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
KRTAP5-AS1	LINC00279(32441),TTTY11(37044)	+/.	./.	11:1571666	Y:8746266	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000233930	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396376	10:104396475	intron	intron	duplication/ITD	0	0	0	558	74	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ERFE	SGCZ	+/+	-/-	2:238163860	8:14953315	CDS	intron	translocation	0	0	0	0	0	low	.	.	|Sarcoglycan_complex_subunit_protein(100%)	.	.	ENSG00000178752	ENSG00000185053	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS1AP	FP671120.4	+/.	+/.	1:162359727	21:8211701	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198929	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
RN7SL711P(3954),AC106786.1(12214)	5_8S_rRNA(2920),FP236383.3(120790)	./.	./.	5:123075034	21:8259853	intergenic	intergenic	translocation	0	0	0	4	31	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	LMF1	./.	-/.	5:23949377	16:854942	intergenic	exon	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000103227	.	.	downstream	downstream	homopolymer(1)	.	.	.
IL5RA	AL139383.1	-/.	-/.	3:3117534	13:33517098	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000091181	ENSG00000230490	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC009035.1(259590),C16orf82(77991)	AP001599.1	./.	+/.	16:26988716	21:26914103	intergenic	intron	translocation	0	0	0	14	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
DDB2	FP671120.7(731),5_8S_rRNA(536)	+/.	./.	11:47233105	21:8256245	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(1)	.	.	.
GVINP2(152),OR2AG2(15150)	MTFR1P1(64623),AL592049.1(10946)	./.	./.	11:6750476	X:66426399	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC41A2	JADE3	-/.	+/.	12:104952400	X:47020461	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136052	ENSG00000102221	.	.	upstream	upstream	mismatches(1)	.	.	.
SREBF2-AS1	AL390879.1	-/-	+/+	22:41833576	X:137012288	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184068	ENSG00000234062	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
GAPDHP75(532267),RNA5SP73(590)	RP1(43574),AC084834.1(152291)	./.	./.	1:189665559	8:54915294	intergenic	intergenic	translocation	0	0	0	9	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FBRSL1	FP236383.3	+/.	+/.	12:132524117	21:8397835	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000112787	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
OTX1	DDB2	+/.	+/.	2:63051498	11:47233103	exon	intron	translocation	0	0	0	6	341	low	.	.	.	.	.	ENSG00000115507	ENSG00000134574	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
ASCC3	AL035079.1(18426),CIR1P3(7505)	-/.	./.	6:100809843	11:34423375	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112249	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749084	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
NXF2(6015),AC235565.2(27658)	NXF2(6024),AC235565.2(27649)	./.	./.	X:102332737	X:102332746	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
DDB2	LINC02550	+/.	-/.	11:47233103	11:111099120	intron	intron	inversion	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000271584	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
ABCC1	FP236383.3	+/.	+/.	16:16038749	21:8397824	intron	intron	translocation	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000103222	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02550	AP001599.1	-/.	+/.	11:111099121	21:26914103	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000271584	ENSG00000223563	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
AC010320.4	HDHD5-AS1(6340),ADA2(7005)	-/.	./.	19:52335072	22:17171785	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000269535	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	MPP3(110),CD300LG(13868)	+/.	./.	11:47233103	17:43833280	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
BCAP31P1	CXorf38(495),MED14(249)	-/.	./.	16:33990777	X:40648056	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000261217	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SNORD3H(207161),AP002982.1(58564)	FP671120.4	./.	+/.	8:97565639	21:8214788	intergenic	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MEGF6	GRIP1	-/.	-/.	1:3505496	12:66638182	CDS	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000162591	ENSG00000155974	.	.	downstream	downstream	mismatches(1)	.	.	.
MRGPRE	DDB2	-/.	+/.	11:3231584	11:47233103	intron	intron	inversion	0	0	0	0	341	low	.	.	.	.	.	ENSG00000184350	ENSG00000134574	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
TMC4	TBC1D17	-/-	+/-	19:54168416	19:49888368	exon	intron	deletion/5'-5'	0	0	0	4	3	low	.	.	.	.	.	ENSG00000167608	ENSG00000104946	.	.	upstream	downstream	mismatches(1)	.	.	.
HTR1E(42954),AL138827.1(10523)	DDB2	./.	+/.	6:87059633	11:47233103	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	duplicates(5),mismatches(1)	.	.	.
AC079612.1(1174),AC079612.2(38430)	FP671120.4	./.	+/.	2:239587268	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L8	FP671120.3(4334),FP671120.7(109)	-/.	./.	11:10508743	21:8254483	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255823	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDB2	ATP1B4	+/.	+/.	11:47233103	X:120373890	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000101892	.	.	downstream	upstream	duplicates(7),mismatches(2)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48514),TPT1P1(55420)	./.	./.	2:128340558	21:31784921	intergenic	intergenic	translocation	0	0	0	35	220	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
DNAH14	AP003390.1(4503),AP001994.1(77178)	+/.	./.	1:225078904	11:119744126	intron	intergenic	translocation	0	0	0	144	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
PDPN	FP236383.3	+/.	+/.	1:13583783	21:8394736	5'UTR	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000162493	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FBXL7	FP236383.3	+/.	+/.	5:15866365	21:8442047	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000183580	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC099552.4(12095),AC099552.2(31191)	BNIP3P6(66060),CR383656.10(70344)	./.	./.	7:155235946	14:18485333	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL591463.1(101809),LRRIQ3(8866)	DLG2	./.	-/.	1:74017149	11:85484188	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4506),AP001994.1(77175)	+/.	./.	1:225078904	11:119744129	intron	intergenic	translocation	0	0	0	144	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
WDR81	FP236383.3	+/.	+/.	17:1724797	21:8438949	5'UTR	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000167716	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GCNT1	COMMD3-BMI1	+/.	+/.	9:76571859	10:22320828	intron	intron	translocation	0	0	0	38	0	low	.	.	.	.	.	ENSG00000187210	ENSG00000269897	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
OTX1	AP001599.1	+/.	+/.	2:63051497	21:26914103	exon	intron	translocation	0	0	0	6	167	low	.	.	.	.	.	ENSG00000115507	ENSG00000223563	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
SDHA	CRADD	+/+	+/-	5:230939	12:93679807	CDS	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	FAD_binding_domain(54%)|	.	.	ENSG00000073578	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LAMA3	MT-RNR2	+/.	+/.	18:23756906	MT:1794	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000053747	ENSG00000210082	.	.	upstream	upstream	duplicates(3),uninteresting_contigs(2)	.	.	.
IL20RB(263261),RNA5SP142(243788)	PCAT1	./.	+/.	3:137274346	8:126750696	intergenic	intron	translocation	0	0	0	71	18	low	.	.	.	.	.	.	ENSG00000253438	.	.	upstream	downstream	mismatches	.	.	.
DNAH14	AP003390.1(4498),AP001994.1(77183)	+/.	./.	1:225078904	11:119744121	intron	intergenic	translocation	0	0	0	144	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
AC012668.3	LRRC20	+/.	-/.	2:215702307	10:70322183	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000237525	ENSG00000172731	.	.	downstream	downstream	mismatches(1)	.	.	.
LINS1	AP005264.4	-/.	+/.	15:100585613	18:12215240	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000140471	ENSG00000267733	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7(390),5_8S_rRNA(877)	FP236383.3	./.	+/.	21:8255904	21:8444656	intergenic	intron	deletion/read-through	0	0	0	74	18	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48517),TPT1P1(55417)	./.	./.	2:128340558	21:31784924	intergenic	intergenic	translocation	0	0	0	35	220	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
LINC00665	LINC00665	-/.	-/.	19:36277203	19:36277216	intron	intron	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	ENSG00000232677	ENSG00000232677	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
DNAH14	AP003390.1(4500),AP001994.1(77181)	+/.	./.	1:225078904	11:119744123	intron	intergenic	translocation	0	0	0	144	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00871	AC005357.2	+/.	+/.	14:46105933	19:27961843	intron	intron	translocation/3'-3'	0	0	0	25	0	low	.	.	.	.	.	ENSG00000258700	ENSG00000267623	.	.	upstream	upstream	mismatches(4)	.	.	.
GALNS	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	16:88834370	21:8259010	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000141012	.	.	.	downstream	upstream	mismatches	.	.	.
LINC02629(156848),PARD3(34908)	LINC02755	./.	-/.	10:34074652	11:29681044	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000254530	.	.	downstream	downstream	mismatches(1)	.	.	.
P4HA2	FP236383.3	-/.	+/.	5:132228591	21:8397815	intron	intron	translocation	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000072682	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
PRICKLE2-AS3	5_8S_rRNA(2096),FP236383.3(121614)	+/.	./.	3:64188277	21:8259029	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000226017	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
GALNS	FP236383.3	-/.	+/.	16:88834648	21:8397815	intron	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000141012	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
PLCH2	FP671120.4	+/.	+/.	1:2451822	21:8214781	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000149527	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
LINC02036	AC004687.2	-/.	-/.	3:194204601	17:58385558	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225742	ENSG00000285897	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLCH2	FP236383.3	+/.	+/.	1:2451822	21:8442045	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000149527	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824763	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(19),low_entropy(5)	.	.	.
GCNT2	AC024563.1	+/.	-/.	6:10627255	19:22694888	3'UTR	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	ENSG00000268981	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2090),FP236383.3(121620)	CACNA1I	./.	+/.	21:8259023	22:39592309	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000100346	.	.	upstream	downstream	mismatches(1)	.	.	.
ANKRD30BL	GCNT2	-/.	+/.	2:132254776	6:10627254	intron	3'UTR	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000163046	ENSG00000111846	.	.	downstream	upstream	mismatches(1)	.	.	.
PTMA(1312),PDE6D(17570)	GDNF-AS1	./.	+/.	2:231714863	5:37928445	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000248587	.	.	downstream	downstream	mismatches(1)	.	.	.
GCNT2	5_8S_rRNA(1477),AC018688.1(59048)	+/.	./.	6:10627254	20:30486553	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	TSHZ2	+/.	+/.	11:47233103	20:52972659	intron	5'UTR	translocation	0	0	0	341	2	low	.	.	.	.	.	ENSG00000134574	ENSG00000182463	.	.	downstream	upstream	mismatches(1)	.	.	.
GCNT2	5_8S_rRNA(1472)	+/.	./.	6:10627254	14:16056000	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GCNT2	CT867976.1(151334),AC138776.1(196546)	+/.	./.	6:10627255	22:11630977	3'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SMG1	MACROD2	-/.	+/.	16:18892388	20:14179650	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000157106	ENSG00000172264	.	.	upstream	downstream	mismatches(1)	.	.	.
GALNT2	BAIAP2L1(189),PPIAP82(52840)	+/.	./.	1:230187477	7:98401279	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000143641	.	.	.	upstream	downstream	mismatches(1)	.	.	.
B4GALT4-AS1	LIG1	+/.	-/.	3:119280652	19:48169913	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000240254	ENSG00000105486	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
GCNT2	LINC00273(1428),RNA5-8SP2(1495)	+/.	./.	6:10627255	16:34161464	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111846	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MGAT5	FP671120.4	+/.	+/.	2:134274704	21:8217552	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000152127	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RGMB-AS1	RPSAP52	-/.	-/.	5:98771438	12:65825652	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	ENSG00000241749	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.5	GCNT2	-/-	+/+	21:8438306	6:10627255	exon	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281181	ENSG00000111846	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.4	GCNT2	-/-	+/+	21:8394096	6:10627255	exon	3'UTR	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280614	ENSG00000111846	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.6	GCNT2	-/-	+/+	21:8211061	6:10627255	exon	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280800	ENSG00000111846	.	.	upstream	upstream	mismatches(1)	.	.	.
FGFR1(15353),C8orf86(26647)	ATP1B4	./.	+/.	8:38484187	X:120373887	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101892	.	.	upstream	upstream	duplicates(7),mismatches(2)	.	.	.
RNU5F-6P(1031),HMGB3P6(4348)	GPC6	./.	+/.	1:164352419	13:93360224	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000183098	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFC1	ARHGAP20	-/.	-/.	4:139295700	11:110641636	intron	intron	translocation/5'-5'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000137727	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7	GCNT2	-/-	+/+	21:8255272	6:10627253	exon	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281383	ENSG00000111846	.	.	upstream	upstream	mismatches(1)	.	.	.
C1orf94	KIAA2012-AS1	+/+	-/-	1:34177327	2:202083776	5'UTR	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000142698	ENSG00000222035	.	.	downstream	downstream	mismatches(1)	.	.	.
AC122694.1(2194771),EMB(2305451)	RCAN2	./.	-/.	5:48090741	6:46469323	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172348	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
BEAN1	KRT8P27(3758),GRPEL2P2(69547)	+/.	./.	16:66427487	X:64628331	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000166546	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SUPT5H	SUPT5H	+/+	+/+	19:39458247	19:39458239	exon	exon	duplication/ITD	0	0	0	24	24	low	.	.	Spt5_transcription_elongation_factor__acidic_N-terminal(28%)|Early_transcription_elongation_factor_of_RNA_pol_II__NGN_section(100%),KOW_motif(100%),Spt5_transcription_elongation_factor__acidic_N-terminal(71%)	.	.	ENSG00000196235	ENSG00000196235	.	.	downstream	upstream	duplicates(1),low_entropy(1)	.	.	.
AL356131.1(332834),MTRNR2L9(183)	MT-RNR2	./.	+/.	6:61574145	MT:2175	intergenic	exon	translocation	0	0	0	65	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC010746.2(61296),NPM1P46(5665)	AC010746.2(61395),NPM1P46(5566)	./.	./.	2:197374036	2:197374135	intergenic	intergenic	duplication/ITD	0	0	0	5	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396443	10:104479843	intron	intron	deletion/read-through/5'-5'	0	0	0	554	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	downstream	upstream	low_entropy	.	.	.
AP001823.1(3448),ELMOD1(740)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590351	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
MAP3K11	AC137695.1(590),AC137695.2(9747)	-/-	./-	11:65612266	3:129335664	exon	intergenic	translocation	0	0	0	0	0	low	.	.	Protein_kinase_domain(50%),Variant_SH3_domain(100%)|	.	.	ENSG00000173327	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ETV7	RFPL4AP7(64492),AC090155.2(79427)	-/.	./.	6:36386940	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000010030	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021203	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	low_entropy(1)	.	.	.
DLG2	CLIP3	-/.	-/.	11:85622192	19:36026173	intron	CDS	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000150672	ENSG00000105270	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3454),ELMOD1(734)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590357	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
RBM5	AL139815.1	+/.	-/.	3:50103159	10:23103183	CDS	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000003756	ENSG00000286924	.	.	upstream	downstream	mismatches(1)	.	.	.
FREM1	FREM1	-/.	-/.	9:14774513	9:14774526	intron	intron	duplication/ITD	0	0	0	8	4	low	.	.	.	.	.	ENSG00000164946	ENSG00000164946	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AP001823.1(3456),ELMOD1(732)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590359	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
AP003390.1(4474),AP001994.1(77207)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744097	14:106419138	intergenic	intergenic	translocation	0	0	0	3711	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4478),AP001994.1(77203)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744101	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AF117829.1	AC009899.1	-/.	+/.	8:89757719	18:37707519	exon	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000251136	ENSG00000285940	.	.	downstream	upstream	mismatches(1)	.	.	.
ARAP2	FP236383.3	-/.	+/.	4:36080800	21:8397435	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000047365	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4480),AP001994.1(77201)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744103	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
SAMD12	AC020916.1	-/.	-/.	8:118554925	19:13829913	intron	exon	translocation/3'-3'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	ENSG00000267519	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AP003390.1(4482),AP001994.1(77199)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744105	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
OR4A6P(127439),TRIM48(408900)	LINC01841(5040),ADGRE5(5265)	./.	./.	11:54853255	19:14375236	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
FPGT-TNNI3K	A1CF	+/.	-/.	1:74229208	10:50848274	intron	intron	translocation/3'-3'	0	0	0	0	34	low	.	.	.	.	.	ENSG00000259030	ENSG00000148584	.	.	upstream	downstream	mismatches(1)	.	.	.
AL590807.1	FP236383.3	-/.	+/.	13:80707413	21:8394736	intron	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000286746	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP003390.1(4484),AP001994.1(77197)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744107	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
5_8S_rRNA(2087),FP236383.3(121623)	FP236383.3	./.	+/.	21:8259020	21:8446136	intergenic	intron	inversion	0	0	0	5911	11	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4486),AP001994.1(77195)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744109	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
DHFR	FP671120.4	-/.	+/.	5:80650272	21:8214313	intron	intron	translocation/3'-3'	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4490),AP001994.1(77191)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744113	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
GPR39	SLC12A3	+/.	+/.	2:132557875	16:56880422	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000070915	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNMB2-AS1	KCNMB2	-/.	+/.	3:178655093	3:178655110	intron	intron	duplication/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000237978	ENSG00000197584	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8205169	21:8442055	intron	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4492),AP001994.1(77189)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744115	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4494),AP001994.1(77187)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744117	14:106419138	intergenic	intergenic	translocation	0	0	0	3583	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
MRC2	NTRK1	+/+	+/+	17:62689981	1:156849597	CDS	intron	translocation	0	0	0	9	4	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_motif(100%),Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(100%)	.	.	ENSG00000011028	ENSG00000198400	.	.	downstream	upstream	mismatches(1)	.	.	.
AC021087.4(356),CCDC127(171)	5_8S_rRNA(2072),FP236383.3(121638)	./.	./.	5:196697	21:8259005	intergenic	intergenic	translocation	0	0	0	12	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AP003390.1(4498),AP001994.1(77183)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744121	14:106419138	intergenic	intergenic	translocation	0	0	0	3002	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP003390.1(4500),AP001994.1(77181)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744123	14:106419138	intergenic	intergenic	translocation	0	0	0	3002	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
CFAP58	MIR4300HG	+/.	-/.	10:104396370	11:82143169	intron	intron	translocation/3'-3'	0	0	0	558	1095	low	.	.	.	.	.	ENSG00000120051	ENSG00000245832	.	.	upstream	downstream	low_entropy	.	.	.
MTAP(21419),CDKN2A-DT(12771)	SH3KBP1	./.	-/.	9:21954158	X:19564553	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000147010	.	.	upstream	upstream	mismatches(1)	.	.	.
AC128709.3(26252),LINC02012(11905)	AL138720.1(7179),AL050335.1(5597)	./.	./.	3:197493357	6:15097349	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143174	14:106419138	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
AC069288.1	MYO18B(24537),LINC02559(106252)	-/.	./.	7:1868724	22:26055582	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000286192	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143159	14:106419138	intron	intergenic	translocation	0	0	0	1124	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC01266	HYDIN	+/.	-/.	3:690316	16:71158143	intron	intron	translocation/3'-3'	0	0	0	0	54	low	.	.	.	.	.	ENSG00000224957	ENSG00000157423	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143163	14:106419138	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
SUCLG2	LINC02629(156849),PARD3(34907)	-/.	./.	3:67550224	10:34074653	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000172340	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143165	14:106419138	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
CACNA1C	AC009041.1(12545),SSTR5-AS1(50622)	+/.	./.	12:2417276	16:1013471	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151067	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143167	14:106419138	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
NRIP3	CHRNB4	-/-	-/-	11:9003964	15:78672957	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)	.	.	ENSG00000175352	ENSG00000117971	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
MIR4300HG	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	11:82143169	14:106419138	intron	intergenic	translocation	0	0	0	1095	192	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479909	14:106419138	intron	intergenic	translocation	0	0	0	1761	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
KMT2C	AC005833.1	-/.	+/.	7:152694837	12:4702125	intergenic	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000055609	ENSG00000255639	.	.	downstream	upstream	duplicates(1)	.	.	.
RTN4IP1	MT-RNR1	-/.	+/.	6:106581377	MT:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000130347	ENSG00000211459	.	.	downstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
AP001823.1(3436),ELMOD1(752)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590339	14:106419138	intergenic	intergenic	translocation	0	0	0	1909	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479890	14:106419138	intron	intergenic	translocation	0	0	0	2216	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
CC2D2B	FP671120.4	+/.	+/.	10:95984176	21:8215397	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000188649	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
MORN1	FP236383.3	-/.	+/.	1:2342558	21:8397814	intron	intron	translocation	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000116151	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
AL110292.1	FP671120.4	+/.	+/.	14:27207779	21:8214784	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000258081	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	AP003390.1(4504),AP001994.1(77177)	-/.	./.	6:42262464	11:119744127	intron	intergenic	translocation	0	0	0	2363	3002	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	low_entropy	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479842	intron	intron	duplication/3'-3'	0	0	0	558	2200	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGAP15	AL161941.1	+/.	-/.	2:143162904	20:16210797	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075884	ENSG00000287410	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC021218.1(49386),Y_RNA(170393)	CPNE7	./.	+/.	7:156015729	16:89588012	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000178773	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479896	14:106419138	intron	intergenic	translocation	0	0	0	2216	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
GRK6	AC024236.1(13449),AC007322.2(11161)	+/.	./.	5:177426661	Y:21860170	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000198055	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479900	14:106419138	intron	intergenic	translocation	0	0	0	2216	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479904	14:106419138	intron	intergenic	translocation	0	0	0	1761	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
PRKAR1B	AL157400.2(1425),AL157400.3(13612)	-/.	./.	7:651313	10:89653569	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000188191	.	.	.	downstream	downstream	mismatches(1)	.	.	.
B4GALNT4	DYRK1A	+/+	+/+	11:369538	21:37366265	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Protein_kinase_domain(100%)	.	.	ENSG00000182272	ENSG00000157540	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479906	14:106419138	intron	intergenic	translocation	0	0	0	1761	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
AP001823.1(3440),ELMOD1(748)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590343	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
ACTN4	AL023882.1	+/+	+/-	19:38729091	16:1045659	CDS	intergenic	translocation/5'-5'	0	0	0	0	0	low	.	.	Calponin_homology_(CH)_domain(100%),EF-hand_domain_pair(100%),Spectrin_repeat(100%)|	.	.	ENSG00000130402	ENSG00000287855	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DDB2	DMRTC1(16310),PABPC1L2B-AS1(38264)	+/.	./.	11:47233103	X:72960124	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL158151.1	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	9:129178735	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000204055	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP001823.1(3444),ELMOD1(744)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590347	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
DBET	RIPPLY3	+/+	+/+	4:190065653	21:37006845	exon	CDS	translocation	0	0	0	4	0	low	.	.	|Transcription_Regulator(100%)	.	.	ENSG00000281591	ENSG00000183145	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262597	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
U85056.1	RIPPLY3	+/+	+/+	4:190065653	21:37006845	exon	CDS	translocation	0	0	0	4	0	low	.	.	|Transcription_Regulator(100%)	.	.	ENSG00000277162	ENSG00000183145	.	.	downstream	upstream	mismatches(1)	.	.	.
DBET	AL353132.1(42877),AL049651.1(1269)	+/+	./-	4:190065653	20:23008940	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000281591	.	.	.	downstream	downstream	mismatches(1)	.	.	.
U85056.1	AL353132.1(42877),AL049651.1(1269)	+/+	./-	4:190065653	20:23008940	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000277162	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DBET	ADARB2(168831),AL355597.1(51233)	+/+	./+	4:190065653	10:1906356	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000281591	.	.	.	downstream	upstream	mismatches(1)	.	.	.
U85056.1	RNU4-43P(92312),AC025475.1(277182)	+/+	./+	4:190065653	5:26105337	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000277162	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC004879.1(19161),MGC4859(190796)	AC044893.1(92009),RN7SKP294(9027)	./.	./.	7:10259024	8:49321183	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008691.1	ARHGEF40	+/.	+/.	5:159652897	14:21071327	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000165801	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104009.1	DDB2	-/.	+/.	11:22316340	11:47233105	intron	intron	duplication/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000254768	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.3(3890),FP671120.7(553)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	21:8254039	21:8259024	intergenic	intergenic	inversion	0	0	0	57	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IMPA2	AL353593.1	+/+	-/-	18:12028982	1:228239488	CDS	exon	translocation	0	0	0	0	2	low	.	.	Inositol_monophosphatase_family(87%)|	.	.	ENSG00000141401	ENSG00000269934	.	.	downstream	downstream	mismatches(1)	.	.	.
JAK1	FP236383.3	-/.	+/.	1:64848252	21:8397828	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000162434	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02235	AP003390.1(4503),AP001994.1(77178)	+/.	./.	8:81842439	11:119744126	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
BNIP3P6(66060),CR383656.10(70344)	TNRC6B	./.	+/.	14:18485333	22:40072445	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000100354	.	.	downstream	upstream	mismatches(1)	.	.	.
GABRA2	BNIP3P6(66059),CR383656.10(70345)	-/.	./.	4:46345970	14:18485332	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000151834	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785698	2:101785796	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
C7orf50(7981),ZFAND2A(5830)	MCF2L	./.	+/.	7:1146241	13:113065912	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000126217	.	.	downstream	upstream	mismatches(1)	.	.	.
MYT1L(85624),AC018685.2(220890)	NF1	./.	+/.	2:2417288	17:31130977	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000196712	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR3142HG	LINC02864	+/.	-/.	5:160454148	18:73168244	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253522	ENSG00000263711	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2W	ZNF329	-/.	-/.	8:73820101	19:58130295	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000181894	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4500),AP001994.1(77181)	FP236383.3	./.	+/.	11:119744123	21:8414016	intergenic	intron	translocation	0	0	0	3002	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
LINC02620	FRMD5(93122),GOLM2(326)	-/.	./.	10:104479909	15:44288393	intron	intergenic	translocation	0	0	0	1761	22	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	mismatches	.	.	.
SNX16	LINC02620	-/.	-/.	8:81842439	10:104479915	intron	intron	translocation	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000104497	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
DHFR	FP671120.4	-/.	+/.	5:80650270	21:8214404	intron	intron	translocation/3'-3'	0	0	0	68	8	low	.	.	.	.	.	ENSG00000228716	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	FRMD5(93122),GOLM2(326)	-/.	./.	10:104479915	15:44288393	intron	intergenic	translocation	0	0	0	1761	22	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	mismatches	.	.	.
PRDM16	MGAT4C	+/+	-/+	1:3436990	12:86408349	3'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000142611	ENSG00000182050	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01237	ATP6V1D	+/.	-/.	2:241961650	14:67301864	intron	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000233806	ENSG00000100554	.	.	upstream	downstream	duplicates(2),mismatches(6)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463097	15:45463192	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AP003390.1(4506),AP001994.1(77175)	FRMD5(93122),GOLM2(326)	./.	./.	11:119744129	15:44288393	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
KIAA2012-AS1	LTBP2	-/.	-/.	2:202083779	14:74533689	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000119681	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
CT75(36423),Y_RNA(15573)	BTBD3(59318),AL109838.1(257381)	./.	./.	2:222389412	20:11985927	intergenic	intergenic	translocation	0	0	0	0	17	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RN7SKP263(6593),AC123567.1(124437)	AC025627.3	./.	+/.	12:94015640	17:19601314	intergenic	exon	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000266179	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
SNX16	AP003390.1(4504),AP001994.1(77177)	-/.	./.	8:81842439	11:119744127	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
LINC02235	AP003390.1(4504),AP001994.1(77177)	+/.	./.	8:81842439	11:119744127	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	mismatches	.	.	.
NUDT14(1074),BRF1(26889)	FP236383.3(930),FP236383.11(6598)	./.	./.	14:105182397	21:8455722	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX16	AP003390.1(4503),AP001994.1(77178)	-/.	./.	8:81842439	11:119744126	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
ZNF543(13324),AC005261.2(6754)	MED12(2051),NLGN3(326)	./.	./.	19:57344094	X:71144505	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ISCA1P2(11034),LINC02814(33489)	SORCS2	./.	+/.	1:229053625	4:7737309	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000184985	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02235	LINC02620	+/.	-/.	8:81842439	10:104479909	intron	intron	translocation/3'-3'	0	0	0	45	1761	low	.	.	.	.	.	ENSG00000254689	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
NTN1	NTN1	+/.	+/.	17:9166144	17:9166209	intron	intron	duplication/ITD	0	0	0	289	289	low	.	.	.	.	.	ENSG00000065320	ENSG00000065320	.	.	upstream	downstream	low_entropy(1)	.	.	.
SRP14P4(39612),GM2AP2(7310)	FP671120.4	./.	+/.	1:171384919	21:8214406	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC004687.2	RPL14P5(31331),CRLF2(146117)	-/.	./.	17:58385558	X:1041432	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C2CD2	DOCK11	-/.	+/.	21:41948380	X:118541249	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000157617	ENSG00000147251	.	.	upstream	upstream	mismatches	.	.	.
AC013400.1(4319),WDR35(3375)	AC013400.1(4333),WDR35(3361)	./.	./.	2:19906888	2:19906902	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LARP1	AP001599.1	+/.	+/.	5:154755363	21:26914102	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000155506	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC005833.1	AC005833.1	+/.	+/.	12:4702131	12:4702202	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255639	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
IFNWP4(8748),AL390882.1(20014)	ARHGEF40	./.	+/.	9:21115584	14:21071327	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000165801	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	UBE2L3	+/.	+/.	21:8444816	22:21613411	intron	intron	translocation	0	0	0	62	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000185651	.	.	upstream	downstream	mismatches(1)	.	.	.
AC005833.1	GAU1	+/.	-/.	12:4702131	12:4702202	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255474	.	.	upstream	downstream	duplicates(1)	.	.	.
DUSP22	NACC2	+/.	-/.	6:334172	9:136019086	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000112679	ENSG00000148411	.	.	downstream	upstream	mismatches(1)	.	.	.
ASB3	ASB3	-/.	-/.	2:53594558	2:53594567	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000115239	ENSG00000115239	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
GAU1	AC005833.1	-/.	+/.	12:4702131	12:4702202	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255639	.	.	upstream	downstream	duplicates(1)	.	.	.
MFF-DT	CEMIP2(21729),ABHD17B(24033)	-/-	./+	2:227268528	9:71838419	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236432	.	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
THEMIS	AC073348.2(233391),PPP1R3A(148516)	-/.	./.	6:127735530	7:113728261	intron	intergenic	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	.	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
FAT1(23079),AC108865.1(141168)	FP236383.3	./.	+/.	4:186749801	21:8441604	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
POLE	EXOC1	-/-	+/-	12:132650318	4:55856087	exon	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	ENSG00000090989	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	BCL11B	./.	-/.	4:186749803	14:99226534	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000127152	.	.	upstream	downstream	mismatches(1)	.	.	.
C16orf95	AL353600.2(169307),LINC02628(18689)	-/-	./-	16:87317150	10:33560242	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FAT1(23079),AC108865.1(141168)	FP671120.4	./.	+/.	4:186749801	21:8214346	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC239799.1(36125),RNU6-1071P(14664)	U3(104497),GPC1(41723)	./.	./.	1:146273932	2:240393940	intergenic	intergenic	translocation	0	0	0	9	357	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1)	.	.	.
FAT1(23079),AC108865.1(141168)	FP236383.3	./.	+/.	4:186749801	21:8397384	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3429),ELMOD1(759)	FXNP1(22701),NRXN3(87394)	./.	./.	11:107590332	14:78082979	intergenic	intergenic	translocation	0	0	0	1909	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC00885(16015),ZDHHC19(20544)	FAT1(23079),AC108865.1(141168)	./.	./.	3:196176908	4:186749801	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	6:93664692	6:93664791	intron	intron	duplication/ITD	0	0	0	22	15	low	.	.	.	.	.	ENSG00000287683	ENSG00000287683	.	.	upstream	downstream	duplicates(9),low_entropy(5)	.	.	.
BCL11B	DIP2A(27614),S100B(975)	-/.	./.	14:99226537	21:46597629	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000127152	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C16orf95	BCL11B	-/-	-/-	16:87317150	14:99226537	CDS	intron	translocation	0	0	0	0	0	low	.	.	|Zinc_finger__C2H2_type(100%)	.	.	ENSG00000260456	ENSG00000127152	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNA1C	FP671120.4	+/.	+/.	12:2315052	21:8215396	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000151067	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
PXDNL	HMGB3P23(424799),RNA5SP281(223599)	-/.	./.	8:51761724	9:32069959	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000147485	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	AL807742.1	+/.	-/.	21:8216865	X:21320978	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000283380	.	.	upstream	downstream	mismatches(1)	.	.	.
MSH3	AL078604.4	+/.	-/.	5:80854005	6:159613715	intron	intron	translocation	0	1	0	26	1	low	.	.	.	.	.	ENSG00000113318	ENSG00000286533	.	.	downstream	downstream	min_support	.	.	.
SDHAP2	CRADD	+/+	+/-	3:195668580	12:93679807	exon	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000215837	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2091),FP236383.3(121619)	IQSEC2	./.	-/.	21:8259024	X:53306177	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000124313	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
OR2K2	CELF1	-/.	-/.	9:111329302	11:47520824	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000171133	ENSG00000149187	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TET2	TET2	+/.	+/.	4:105163800	4:105163855	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000168769	ENSG00000168769	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC136297.1(13056),LINC02689(235)	PDXDC1	./.	+/.	11:1350124	16:15028224	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000179889	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008164.1(68612),AC008069.1(15641)	DENND1A	./.	-/.	2:16838179	9:123387697	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000119522	.	.	upstream	downstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22754),NRXN3(87341)	./.	./.	14:78082946	14:78083032	intergenic	intergenic	duplication/ITD	0	0	0	336	401	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SNX16	AP003390.1(4500),AP001994.1(77181)	-/.	./.	8:81842440	11:119744123	intron	intergenic	translocation	0	0	0	45	3002	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
LINC01090	TMEM252-DT	-/.	+/.	2:188009082	9:68560476	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000231689	ENSG00000226337	.	.	downstream	downstream	mismatches(1)	.	.	.
CXorf38(495),MED14(249)	BCAP31	./.	-/.	X:40648056	X:153703303	intergenic	intron	inversion	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000185825	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262597	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
UBE2W	SMG1	-/.	-/.	8:73820122	16:18892387	intron	intron	translocation	0	0	0	164	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000157106	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
TAF13	TACC2	-/.	+/.	1:109067312	10:122053611	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000197780	ENSG00000138162	.	.	upstream	upstream	mismatches(1)	.	.	.
NXF2(27602),AC235565.2(6071)	NXF2(27615),AC235565.2(6058)	./.	./.	X:102354324	X:102354337	intergenic	intergenic	duplication/ITD	0	0	0	75	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(3)	.	.	.
NXF2(27600),AC235565.2(6073)	NXF2(27615),AC235565.2(6058)	./.	./.	X:102354322	X:102354337	intergenic	intergenic	duplication/ITD	0	0	0	75	55	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01608	BFSP1	-/.	-/.	8:110977288	20:17526167	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	ENSG00000125864	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262469	6:42262481	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
AC087564.1	AC087564.1	+/+	+/+	16:51441075	16:51441060	exon	exon	duplication/ITD	0	0	0	25	28	low	.	.	.	.	.	ENSG00000285367	ENSG00000285367	.	.	downstream	upstream	duplicates(16),low_entropy(4)	.	.	.
CASC15	FP671120.4	+/.	+/.	6:22499158	21:8214396	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000272168	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01854(94046),PPIAP65(128403)	STXBP5L	./.	+/.	2:129367894	3:120908858	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000145087	.	.	upstream	downstream	mismatches(1)	.	.	.
LIN52(32941),VSX2(5273)	AL008720.2(3042),Z72006.1(67221)	./.	./.	14:74234176	22:48336241	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NALCN-AS1	FP671120.4	+/.	+/.	13:100887357	21:8214406	intron	intron	translocation/3'-3'	0	0	0	2	8	low	.	.	.	.	.	ENSG00000233009	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP671120.7(393),5_8S_rRNA(874)	FP671120.7(733),5_8S_rRNA(534)	./.	./.	21:8255907	21:8256247	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
STXBP5L	DDB2	+/.	+/.	3:120908858	11:47233105	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000145087	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
NOC2LP2(16145),RHOQP2(267)	SHISA9	./.	+/.	2:131460732	16:13091304	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000237515	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396372	10:104479908	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
AP001823.1(3435),ELMOD1(753)	AP001823.1(3533),ELMOD1(655)	./.	./.	11:107590338	11:107590436	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
NOC2LP2(16145),RHOQP2(267)	INTS12	./.	-/.	2:131460732	4:105861761	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000138785	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP003390.1(4486),AP001994.1(77195)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744109	14:78082967	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
PTPRD	OTX2-AS1	-/.	+/.	9:8698332	14:56844325	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000153707	ENSG00000248550	.	.	downstream	downstream	mismatches(1)	.	.	.
NOC2LP2(16145),RHOQP2(267)	FST(8153),NDUFS4(65346)	./.	./.	2:131460732	5:53495287	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SNX16	FP236383.3	-/.	+/.	8:81842488	21:8433768	intron	intron	translocation	0	0	0	75	0	low	.	.	.	.	.	ENSG00000104497	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AF235103.3	LINC00845(112607),TMEM26(267615)	-/.	./.	8:144867653	10:61139027	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000286681	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NEK6	FP671120.4	+/.	+/.	9:124343201	21:8214781	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000119408	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
NOC2LP2(16145),RHOQP2(267)	HMGB3P23(291566),RNA5SP281(356832)	./.	./.	2:131460732	9:31936726	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC114277.1(97006),RNA5SP181(41180)	LINC02885(37301),ISX(25973)	./.	./.	5:36444163	22:35040163	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
C1D	NOC2LP2(16145),RHOQP2(267)	-/.	./.	2:68065407	2:131460732	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197223	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LRR1	SHISA9	+/.	+/.	14:49599727	16:13091304	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165501	ENSG00000237515	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC114485.1(331898),AC099567.1(41794)	AC114485.1(331955),AC099567.1(41737)	./.	./.	1:102721528	1:102721585	intergenic	intergenic	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
INTS12	LRR1	-/.	+/.	4:105861761	14:49599727	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138785	ENSG00000165501	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
B4GALT4-AS1	ACTN1-AS1	+/.	+/.	3:119280652	14:68979860	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000240254	ENSG00000259062	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC012533.1	CHTF18	+/.	+/.	8:80923077	16:795868	intron	intron	translocation	0	0	0	12	5	low	.	.	.	.	.	ENSG00000286763	ENSG00000127586	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
FP671120.5(89927),FP671120.4(3987)	FP671120.4	./.	+/.	21:8193633	21:8214787	intergenic	intron	deletion/read-through	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(2),read_through(3)	.	.	.
FST(8153),NDUFS4(65346)	LRR1	./.	+/.	5:53495287	14:49599727	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165501	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SPIDR	LRR1	+/.	+/.	8:47318602	14:49599727	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164808	ENSG00000165501	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DTNA	AC026898.1(1904),SMAD2(103308)	+/.	./.	18:34571660	18:47705649	intron	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134769	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092723.5	PEPD	+/.	-/.	16:85937163	19:33426974	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000285163	ENSG00000124299	.	.	upstream	downstream	mismatches(1)	.	.	.
RHOQ	SPIDR	+/.	+/.	2:46542783	8:47301950	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	ENSG00000164808	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL354702.1	UST-AS2	-/.	-/.	1:38786665	6:149032206	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000284632	ENSG00000236591	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	FP236383.3	./.	+/.	2:240393940	21:8442082	intergenic	intron	translocation	0	0	0	357	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
RHOQ	HMGB3P23(291566),RNA5SP281(356832)	+/.	./.	2:46542783	9:31936726	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC006499.8(7830),RAF1P1(8861)	DDX12P	./.	-/.	4:10246065	12:9426557	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000214826	.	.	upstream	downstream	mismatches(1)	.	.	.
AL158210.1	5_8S_rRNA(1979),FP236383.3(121731)	+/.	./.	10:6788934	21:8258912	intron	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000285743	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104465.1(74383),AC092810.3(31644)	AC104465.1(74427),AC092810.3(31600)	./.	./.	1:209075859	1:209075903	intergenic	intergenic	duplication/ITD	0	0	0	42	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(24),low_entropy(8)	.	.	.
LINC01205	CCDC175	+/.	-/.	3:109700822	14:59530868	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000151838	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01205	CCDC26	+/.	-/.	3:109700822	8:128770396	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000229140	.	.	upstream	downstream	mismatches(1)	.	.	.
AC106870.3	AC064874.1	-/.	-/.	2:29845744	2:235775619	intron	intron	inversion/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288553	ENSG00000222007	.	.	upstream	upstream	mismatches(1)	.	.	.
AC078980.1	CCDC26	+/.	-/.	3:109700822	8:128770396	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000229140	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001885.2	FP236383.3	-/.	+/.	11:67317231	21:8435132	exon	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000287851	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP002371.1(8127),AP003072.4(53697)	AC005258.1	./.	+/.	11:93080158	19:2338920	intergenic	intron	translocation	0	0	0	30	15	low	.	.	.	.	.	.	ENSG00000273734	.	.	upstream	downstream	mismatches(1)	.	.	.
AC078980.1	LINC00630	+/.	+/.	3:109700822	X:102809209	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000223546	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01205	AC010834.2	+/.	+/.	3:109700822	8:93742499	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000253848	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(1992),DUX4L32(19586)	UBE2V1P3(94050),AC010737.1(75725)	./.	./.	20:29299238	Y:3960772	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC090204.1	MT-RNR2	+/.	+/.	8:33012609	MT:1699	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000247134	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01205	AC122719.2(2669),AC116351.1(3211)	+/.	./.	3:109700822	5:983969	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC078980.1	AC122719.2(2669),AC116351.1(3211)	+/.	./.	3:109700822	5:983969	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC078980.1	LINC02752	+/.	+/.	3:109700822	11:11036667	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000254401	.	.	upstream	downstream	mismatches(1)	.	.	.
AL139815.1	LINC00348(85851),RABEPKP1(41942)	-/.	./.	10:23103183	13:71254268	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000286924	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KBTBD11(24865),AC245164.1(1707)	SDC2(16874),CPQ(16578)	./.	./.	8:2031801	8:96628664	intergenic	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CTNND2	LINC02752	-/.	+/.	5:11595851	11:11036668	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169862	ENSG00000254401	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF9	DDB2	-/-	+/-	5:132866330	11:47233103	5'UTR	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000164404	ENSG00000134574	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC01205	CLN8	+/.	+/.	3:109700822	8:1794209	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000182372	.	.	upstream	downstream	mismatches(1)	.	.	.
MT-RNR2	PCMTD1	+/+	-/+	MT:1816	8:51864075	exon	intron	translocation/5'-5'	0	0	0	.	4	low	.	.	.	.	.	ENSG00000210082	ENSG00000168300	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC01205	AC019257.8	+/.	+/.	3:109700822	8:1794209	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000283239	.	.	upstream	downstream	mismatches(1)	.	.	.
ACAP2	MSH3	-/.	+/.	3:195292823	5:80854005	intron	intron	translocation/5'-5'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000114331	ENSG00000113318	.	.	upstream	downstream	mismatches(1)	.	.	.
AC078980.1	CLN8	+/.	+/.	3:109700822	8:1794209	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000182372	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650602	21:8393310	intron	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02055	MSI2	+/.	+/.	8:136736782	17:57361124	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000254101	ENSG00000153944	.	.	upstream	upstream	mismatches(1)	.	.	.
HMCN1	RNU6-1312P(86505),CRLF3P3(286793)	+/.	./.	1:186010335	2:83744347	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000143341	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC078980.1	AC019257.8	+/.	+/.	3:109700822	8:1794209	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000283239	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117445	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
C5orf64	SBNO2	+/+	-/-	5:61731300	19:1108318	exon	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178722	ENSG00000064932	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
C5orf64	GRIK4	+/+	+/-	5:61731300	11:120512061	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178722	ENSG00000149403	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TENM2	ARHGEF40	+/.	+/.	5:167383292	14:21071327	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000145934	ENSG00000165801	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96617935	21:8442048	5'UTR	intron	translocation/3'-3'	0	0	0	2	5962	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC091804.1(527943),ALCAM(335700)	KCTD20	./.	+/.	3:105031209	6:36571000	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000112078	.	.	upstream	downstream	mismatches(1)	.	.	.
ANXA11	MRPS36P5(24795),LINC02461(76134)	-/.	./.	10:80168263	12:43079181	intron	intergenic	translocation	0	0	0	4	3	low	.	.	.	.	.	ENSG00000122359	.	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
LINC02333(3979),THSD1(31292)	ARHGEF40	./.	+/.	13:52345875	14:21071327	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000165801	.	.	downstream	upstream	mismatches(1)	.	.	.
FHIT	RPL14P5(113055),CRLF2(64393)	-/.	./.	3:60612797	X:1123156	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000189283	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLXNA4	SCARA5	-/.	-/.	7:132611063	8:27916854	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000221866	ENSG00000168079	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00581	AC079193.1(4368),ZDHHC2(1226)	-/.	./.	6:21493479	8:17155256	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280989	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ARPP21	ARHGEF40	+/.	+/.	3:35680747	14:21071327	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172995	ENSG00000165801	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM184C	ARHGEF40	+/.	+/.	4:147649186	14:21071327	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000164168	ENSG00000165801	.	.	downstream	upstream	mismatches(1)	.	.	.
AL161908.1	KRT18P55	-/.	-/.	9:126603190	17:28307146	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000224842	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
PRMT9	ARHGEF40	-/.	+/.	4:147649186	14:21071327	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000164169	ENSG00000165801	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02612	AC090022.1(29182),AC090022.2(25866)	+/.	./.	2:150617538	12:60393117	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4(935),FP671120.10(6773)	FP236383.3	./.	+/.	21:8228581	21:8394722	intergenic	intron	inversion	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL139383.1	FP671120.4	-/.	+/.	13:33517097	21:8214396	intron	intron	translocation/3'-3'	0	0	0	2	540	low	.	.	.	.	.	ENSG00000230490	ENSG00000278996	.	.	downstream	upstream	mismatches(2)	.	.	.
AL139383.1	FP236383.3	-/.	+/.	13:33517097	21:8397434	intron	intron	translocation/3'-3'	0	0	0	2	543	low	.	.	.	.	.	ENSG00000230490	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
AL512662.1	AL512662.1	+/.	+/.	10:79912060	10:79912073	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000283913	ENSG00000283913	.	.	upstream	downstream	low_entropy(2)	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP001823.1(3430),ELMOD1(758)	./.	./.	3:137274341	11:107590333	intergenic	intergenic	translocation	0	0	0	71	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
DNAH14	AP003390.1(4496),AP001994.1(77185)	+/.	./.	1:225078904	11:119744119	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP003390.1(4494),AP001994.1(77187)	./.	./.	3:137274341	11:119744117	intergenic	intergenic	translocation	0	0	0	71	3583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
CBLB(60139),AC131237.1(230726)	MARCHF6	./.	+/.	3:105929691	5:10355510	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000145495	.	.	downstream	downstream	mismatches(1)	.	.	.
OXNAD1	AL110505.1(238204),ATP5MC2P2(58257)	+/.	./.	3:16298767	14:49315709	intron	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	.	.	.	downstream	upstream	mismatches(2)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262598	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749049	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
COL5A1	LINC00511	+/.	-/.	9:134829849	17:72537262	intron	intron	translocation/3'-3'	0	0	0	0	16	low	.	.	.	.	.	ENSG00000130635	ENSG00000227036	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
MLIP	FP236383.3	+/.	+/.	6:53961499	21:8401909	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146147	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262596	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262592	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262590	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262588	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
SLC36A4	LINC01982(244025),LINC02089(82395)	-/.	./.	11:93184706	17:52779726	intron	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	ENSG00000180773	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KRT8	LARGE1	-/.	-/.	12:52904198	22:33771304	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000170421	ENSG00000133424	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OXNAD1	PGM5	+/.	+/.	3:16298767	9:68434360	intron	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000154330	.	.	downstream	upstream	mismatches(2)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262584	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
TFRC	RPS18P6(259149),MTHFD2P1(222897)	-/-	./-	3:196081919	3:95431526	5'UTR	intergenic	deletion	0	0	0	4	45	low	.	.	.	.	.	ENSG00000072274	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262582	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
AC021087.4(356),CCDC127(171)	FP236383.3	./.	+/.	5:196697	21:8442040	intergenic	intron	translocation	0	0	0	12	6003	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
DHFR	AC044784.1(207220),LINC00709(95145)	-/.	./.	5:80650902	10:9180688	intron	intergenic	translocation	0	0	0	30	4	low	.	.	.	.	.	ENSG00000228716	.	.	.	upstream	upstream	mismatches	.	.	.
TLR5	TLR5	-/.	-/.	1:223141823	1:223141836	intron	intron	duplication/ITD	0	0	0	7	0	low	.	.	.	.	.	ENSG00000187554	ENSG00000187554	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
BCRP9(38369),NPM1P22(2713)	AL121790.1	./.	+/.	13:67829163	14:37572119	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258414	.	.	downstream	downstream	mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262580	intergenic	intron	translocation	0	0	0	71	2136	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
DNMBP	LIG1	-/.	-/.	10:99948205	19:48169913	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107554	ENSG00000105486	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
HIVEP1	DTNA	+/.	+/.	6:12040673	18:34571660	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000095951	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01947(37496),AC091819.2(152452)	LINC01947(37507),AC091819.2(152441)	./.	./.	5:166963866	5:166963877	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	9:106877174	9:106877188	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000148143	ENSG00000148143	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
GNG7(49),DIRAS1(11824)	FP236383.3	./.	+/.	19:2702743	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AASS	FP671120.3(594),FP671120.7(3849)	-/.	./.	7:122096894	21:8250743	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000008311	.	.	.	downstream	upstream	mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262578	intergenic	intron	translocation	0	0	0	71	2136	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
AL009177.1	AL353611.2(21965),OLFM1(57603)	+/.	./.	6:14487262	9:135017819	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286277	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262576	intergenic	intron	translocation	0	0	0	71	2136	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
SCTR	LGI2(57572),SEPSECS(31496)	-/.	./.	2:119443092	4:25088518	intron	intergenic	translocation	0	0	0	0	68	low	.	.	.	.	.	ENSG00000080293	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
FAM184A	AC019117.1	-/.	-/.	6:118987980	7:17532328	intron	intron	translocation	0	0	0	2	5	low	.	.	.	.	.	ENSG00000111879	ENSG00000236039	.	.	upstream	downstream	mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262574	intergenic	intron	translocation	0	0	0	71	2136	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
DIXDC1	SNX1	+/.	+/.	11:111932709	15:64095912	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000150764	ENSG00000028528	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8398540	21:8399956	intron	intron	inversion/3'-3'	0	0	0	4	205	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	AC106782.4(5723),CD2BP2(1714)	./.	./.	3:103984260	16:30349059	intergenic	intergenic	translocation	0	0	0	83	2	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262572	intergenic	intron	translocation	0	0	0	71	2136	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262570	intergenic	intron	translocation	0	0	0	71	2136	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
TRERF1	GPC3	-/.	-/.	6:42262585	X:133661643	intron	intron	translocation/3'-3'	0	0	0	1540	131	low	.	.	.	.	.	ENSG00000124496	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP001823.1(3434),ELMOD1(754)	./.	./.	3:137274341	11:107590337	intergenic	intergenic	translocation	0	0	0	71	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
IQCH	AC009158.1	+/.	+/.	15:67310425	16:26333540	intron	intron	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000103599	ENSG00000231876	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C16orf91(5657),PERCC1(4665)	FP236383.3	./.	+/.	16:1426413	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
WIF1	RAB2A	-/-	+/+	12:65066663	8:60532010	CDS	intron	translocation	0	0	0	0	0	low	.	.	Human_growth_factor-like_EGF(51%),WIF_domain(100%)|Ras_family(94%)	.	.	ENSG00000156076	ENSG00000104388	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785693	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785691	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
AC090844.2	AC005244.2(158893),AC084167.1(16578)	+/+	./-	17:39927760	17:12374160	exon	intergenic	inversion	0	0	0	0	3	low	.	.	.	.	.	ENSG00000264968	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNMB2-AS1	KCNMB2	-/.	+/.	3:178655090	3:178655101	intron	intron	duplication/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000237978	ENSG00000197584	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02641	AC064801.2	+/.	+/.	10:123514008	18:62551947	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000230131	ENSG00000279236	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
GPR55	NPLOC4	-/.	-/.	2:230948894	17:81626505	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135898	ENSG00000182446	.	.	upstream	upstream	mismatches(1)	.	.	.
FAF2	RPS6KA2	+/+	-/-	5:176506922	6:166893131	CDS	intron	translocation	0	0	0	6	0	low	.	.	UBA-like_domain(100%),UBX_domain(95%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000113194	ENSG00000071242	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS23P5(103259),NENFP3(199733)	5_8S_rRNA(2081),FP236383.3(121629)	./.	./.	5:13353921	21:8259014	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785689	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
AP003390.1(4406),AP001994.1(77275)	AP003390.1(4505),AP001994.1(77176)	./.	./.	11:119744029	11:119744128	intergenic	intergenic	duplication/ITD	0	0	0	3752	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC021785.1(242231),LINC01603(4429)	FP236383.3	./.	+/.	8:69420420	21:8444814	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MLYCD	FAT1(23082),AC108865.1(141165)	+/+	./+	16:83922178	4:186749804	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
VTI1A	VTI1A	+/.	+/.	10:112518540	10:112518590	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000151532	ENSG00000151532	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785687	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
EFCAB14(21847),AL593856.1(1336)	ADGRD1	./.	+/.	1:46740993	12:131063013	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000111452	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785685	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
AC008691.1	LINC01169(15213),SMAD6(1229)	+/.	./.	5:159645741	15:66701007	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FAM89A(801),AL109810.1(76776)	KRT19P4(10027),PBLD(11134)	./.	./.	1:231041055	10:68271526	intergenic	intergenic	translocation	0	0	0	6	20	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNU5F-6P(1032),HMGB3P6(4347)	GPM6B	./.	-/.	1:164352420	X:13801017	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000046653	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785683	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
SH3TC2	FP671120.4	-/.	+/.	5:149025829	21:8217546	3'UTR	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000169247	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785681	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
CCDC178	FP236383.3	-/.	+/.	18:32975568	21:8444811	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000166960	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214800	21:8397835	intron	intron	duplication	0	0	0	5263	5614	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
CBLB(204073),AC131237.1(86792)	FP671120.4	./.	+/.	3:106073625	21:8214881	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(3),homopolymer(1)	.	.	.
CFTR	FP236383.3	+/.	+/.	7:117448928	21:8399899	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000001626	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785678	3:137274341	intron	intergenic	translocation	0	0	0	466	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
DNAH14	AP003390.1(4488),AP001994.1(77193)	+/.	./.	1:225078904	11:119744111	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP003390.1(4502),AP001994.1(77179)	./.	./.	3:137274341	11:119744125	intergenic	intergenic	translocation	0	0	0	71	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
DNAH14	AP003390.1(4486),AP001994.1(77195)	+/.	./.	1:225078904	11:119744109	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
CDH12	ATP9B(2396),NFATC1(15173)	-/.	./.	5:22594933	18:79380683	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154162	.	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP003390.1(4500),AP001994.1(77181)	./.	./.	3:137274341	11:119744123	intergenic	intergenic	translocation	0	0	0	71	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
FP671120.4	AC091806.1	+/.	+/.	21:8214798	X:40289161	intron	intron	translocation	0	0	0	5263	10	low	.	.	.	.	.	ENSG00000278996	ENSG00000236393	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ALOX15P1	C17orf100	+/.	+/.	17:6659790	17:6659833	intron	intron	duplication	0	0	0	8	8	low	.	.	.	.	.	ENSG00000274114	ENSG00000256806	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
KCNH2	AC074011.1	-/-	-/+	7:150947792	2:28663044	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	ENSG00000230730	.	.	upstream	upstream	mismatches(1)	.	.	.
AL096854.1	PAX5	+/.	-/.	6:120548630	9:37009557	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000286540	ENSG00000196092	.	.	upstream	upstream	mismatches(1)	.	.	.
AL645937.1(15202),AL645937.4(4339)	YBX2P2	./.	-/.	6:29158136	15:93066409	intergenic	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000258611	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45463195	intron	intron	translocation/5'-5'	0	0	0	154	37	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC008691.1	AC064801.2	+/.	+/.	5:159440413	18:62551948	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000279236	.	.	downstream	upstream	mismatches(1)	.	.	.
TPCN1	FP236383.3	+/.	+/.	12:113295637	21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000186815	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
IGHG1(5071),IGHG3(16361)	AC064801.2	./.	+/.	14:105748142	18:62551948	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000279236	.	.	downstream	upstream	mismatches(1)	.	.	.
AC007040.2	BCL2(412),KDSR(7186)	-/.	./.	2:70994857	18:63320540	5'UTR	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000258881	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IGHG3(4438),ATP6V1G1P1(9662)	AC064801.2	./.	+/.	14:105775843	18:62551948	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000279236	.	.	downstream	upstream	mismatches(1)	.	.	.
SAFB2	FP236383.3	-/.	+/.	19:5589367	21:8442058	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000130254	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL356131.1(332832),MTRNR2L9(185)	5_8S_rRNA(1694),FP236383.3(122016)	./.	./.	6:61574143	21:8258627	intergenic	intergenic	translocation	0	0	0	65	44	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ST6GALNAC3	MSI2	+/.	+/.	1:76541273	17:57361124	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184005	ENSG00000153944	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008691.1	MSI2	+/.	+/.	5:159440413	17:57361124	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000153944	.	.	downstream	upstream	mismatches(1)	.	.	.
IGHG1(5071),IGHG3(16361)	MSI2	./.	+/.	14:105748142	17:57361124	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000153944	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNH2	DNAH9	-/-	+/-	7:150947792	17:11743090	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	ENSG00000007174	.	.	upstream	downstream	mismatches(1)	.	.	.
ADNP-AS1	CSK(8121),LMAN1L(1397)	+/+	./-	20:50931007	15:74811319	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259456	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
TATDN2	SLC6A19	+/.	+/.	3:10249513	5:1210819	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000174358	.	.	upstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396370	10:104396459	intron	intron	duplication/ITD	0	0	0	558	554	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	same_gene	.	.	.
IGHG3(4438),ATP6V1G1P1(9662)	MSI2	./.	+/.	14:105775843	17:57361124	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000153944	.	.	downstream	upstream	mismatches(1)	.	.	.
MFHAS1	FP236383.3	-/-	+/+	8:8893384	21:8442056	5'UTR	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000147324	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MACROD2	MACROD2	+/.	+/.	20:15209088	20:15209116	intron	intron	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	ENSG00000172264	ENSG00000172264	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
KCNH2	CHST10	-/-	-/-	7:150947792	2:100396569	CDS	intron	translocation	0	0	0	0	1	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|Sulfotransferase_family(86%)	.	.	ENSG00000055118	ENSG00000115526	.	.	upstream	downstream	mismatches(1)	.	.	.
PTPRJ	SIK1(13122),LINC00319(6348)	+/.	./.	11:48006284	21:43440253	intron	intergenic	translocation	0	0	0	2	1	low	.	.	.	.	.	ENSG00000149177	.	.	.	upstream	upstream	mismatches	.	.	.
GPC3	GPC3	-/.	-/.	X:133661557	X:133661634	intron	intron	duplication/ITD	0	0	0	140	143	low	.	.	.	.	.	ENSG00000147257	ENSG00000147257	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
KCNH2	ST3GAL4	-/-	+/+	7:150947792	11:126435553	CDS	intron	translocation	0	0	0	0	0	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	ENSG00000110080	.	.	upstream	upstream	mismatches(1)	.	.	.
RNA5SP200(6869),STC2(15225)	KDM4C	./.	+/.	5:173299488	9:7086288	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
AL157702.2(55465),AL157702.1(20674)	FP236383.3	./.	+/.	9:113738320	21:8444310	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01854(94048),PPIAP65(128401)	SLC25A48	./.	+/.	2:129367896	5:135775888	intergenic	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	.	ENSG00000145832	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGEF40	OFD1	+/.	+/.	14:21071327	X:13765539	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165801	ENSG00000046651	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNH2	C3orf38(147663),ABCF2P1(764)	-/-	./-	7:150947792	3:88316392	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC064801.2	IL1RAPL1	+/.	+/.	18:62551948	X:29436550	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000279236	ENSG00000169306	.	.	upstream	downstream	mismatches(1)	.	.	.
STXBP5-AS1	RPS27AP20(98224),BX890604.1(1704)	-/.	./.	6:146976739	X:3815824	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000233452	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TENM2	FP671120.3(4332),FP671120.7(111)	+/.	./.	5:168236204	21:8254481	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145934	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TNS3	CA5B	-/.	+/.	7:47476054	X:15728816	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000136205	ENSG00000169239	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC005064.1	IFT88	+/.	+/.	7:103513881	13:20601516	exon	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000234715	ENSG00000032742	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC35F3	AL390763.1(269178),LINC02667(323418)	+/.	./.	1:234066086	10:128589392	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183780	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TENM3	AC005064.1	+/.	+/.	4:182224070	7:103513880	intron	exon	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000218336	ENSG00000234715	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2085),FP236383.3(121625)	+/.	./.	21:8209833	21:8259018	intron	intergenic	inversion	0	0	0	48	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
DDB2	GPS1	+/.	+/.	11:47233105	17:82055707	intron	exon	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000169727	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479892	intron	intron	translocation	0	0	0	144	2216	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
EMCN	EMCN	-/.	-/.	4:100459179	4:100459188	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000164035	ENSG00000164035	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL513210.1	AC005064.1	-/.	+/.	6:168938560	7:103513880	intron	exon	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000225879	ENSG00000234715	.	.	downstream	upstream	mismatches(1)	.	.	.
MAPK10	THSD4	-/-	+/-	4:86000578	15:71205177	3'UTR	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000109339	ENSG00000187720	.	.	upstream	downstream	mismatches(1)	.	.	.
EPHA6	AC005064.1	+/.	+/.	3:97153334	7:103513880	intron	exon	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000080224	ENSG00000234715	.	.	downstream	upstream	mismatches(1)	.	.	.
GDF6	GDF6	-/-	-/-	8:96144245	8:96144258	3'UTR	3'UTR	duplication/ITD	0	0	0	15	0	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000156466	ENSG00000156466	.	.	upstream	downstream	duplicates(13),low_entropy(2)	.	.	.
AC113367.2(131990),HINT1(14651)	CRADD	./.	+/.	5:131140732	12:93846252	intergenic	intron	translocation	0	0	0	6	24	low	.	.	.	.	.	.	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CRADD	AC002472.4(8665),BCRP2(13333)	+/.	./.	12:93846251	22:21089683	intron	intergenic	translocation	0	0	0	24	6	low	.	.	.	.	.	ENSG00000169372	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC012506.2(1451),AC012506.4(13402)	CRADD	./.	+/.	2:23361827	12:93846253	intergenic	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000169372	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214795	21:8392864	intron	intron	inversion/3'-3'	0	0	0	5263	43	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SORCS2	AL009177.1	+/.	+/.	4:7676890	6:14487262	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184985	ENSG00000286277	.	.	upstream	upstream	mismatches(1)	.	.	.
LAMA3	MT-RNR2	+/.	+/.	18:23756906	MT:2228	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000053747	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02613	U3(104497),GPC1(41723)	-/.	./.	2:38515935	2:240393940	intergenic	intergenic	deletion	0	0	0	0	357	low	.	.	.	.	.	ENSG00000231367	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CRADD	RNY1P8(125730),AL162376.1(46041)	+/.	./.	12:93846253	13:73352990	intron	intergenic	translocation	0	0	0	24	2	low	.	.	.	.	.	ENSG00000169372	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CRADD	AC244102.3(15498),CETN2(19228)	+/.	./.	12:93846253	X:152807766	intron	intergenic	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104777.1	SLC25A6	-/.	-/.	2:150617538	X:1389097	intron	intron	translocation/5'-5'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000169100	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC5L	CRADD	+/.	+/.	6:44390173	12:93846253	intron	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000096401	ENSG00000169372	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MACROD2	FP236383.3	+/.	+/.	20:15601699	21:8389581	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000172264	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CRADD	AC091057.5	+/.	+/.	12:93846253	15:30653745	intron	intron	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	ENSG00000284906	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ANKRD6	DDB2	+/.	+/.	6:89555913	11:47233105	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000135299	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
DCBLD2	FP671120.4	-/.	+/.	3:98886177	21:8214396	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000057019	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AL356157.1(162169),TMEM72-AS1(28846)	AL356157.1(162235),TMEM72-AS1(28780)	./.	./.	10:44764273	10:44764339	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CRADD	AC091057.6	+/.	+/.	12:93846253	15:30653745	intron	intron	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	ENSG00000285035	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CRADD	ULK4P2	+/.	+/.	12:93846253	15:30591949	intron	intron	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	ENSG00000260128	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KIAA1217	OR8D4(17939),OR4D5(12375)	+/.	./.	10:23752022	11:123927168	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000120549	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	SYN3	+/.	-/.	21:8214791	22:32535780	intron	intron	translocation	0	0	0	5263	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000185666	.	.	upstream	upstream	mismatches(1)	.	.	.
CRADD	MYO5B	+/.	-/.	12:93846253	18:49857551	intron	intron	translocation/5'-5'	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	ENSG00000167306	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749046	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
CRADD	ULK4P1	+/.	-/.	12:93846253	15:32415370	intron	intron	translocation	0	0	0	24	2	low	.	.	.	.	.	ENSG00000169372	ENSG00000261279	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ATL2	AC009997.1(47927),NEDD4(32228)	-/.	./.	2:38299224	15:55794694	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000119787	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PTPRD	CRADD	-/.	+/.	9:9098726	12:93846255	intron	intron	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000153707	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FRAS1	LMX1B	+/.	+/.	4:78434162	9:126671248	intron	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000138759	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396542	8:22396553	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AC005699.1	HCFC2P1(19971),MYO16(94364)	+/.	./.	4:11719946	13:108501788	intron	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000249631	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ACMSD	CCNT2-AS1	+/.	-/.	2:134845511	2:134845524	intron	intron	duplication/3'-3'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000224043	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
ABCC6P1(142407),RPS15A(40560)	ABCC6P1(142463),RPS15A(40504)	./.	./.	16:18740735	16:18740791	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AL355836.3	AC002472.4(8665),BCRP2(13333)	-/.	./.	14:101193602	22:21089683	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000288245	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CACFD1	FP236383.3	+/.	+/.	9:133464529	21:8397800	intron	intron	translocation	0	0	0	1	5614	low	.	.	.	.	.	ENSG00000160325	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC100802.1	AL355836.3	+/.	-/.	8:20108617	14:101193603	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253775	ENSG00000288245	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785681	intron	intron	translocation	0	0	0	144	496	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
TRIM51EP	LINC01484	-/-	-/+	11:89989165	5:173742753	intron	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000237706	ENSG00000253686	.	.	upstream	upstream	mismatches(1)	.	.	.
AC068787.1(14544),AC068787.3(6502)	AXL	./.	+/.	12:127477741	19:41230109	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000167601	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NTRK2	JAKMIP3	+/.	+/.	9:84975074	10:132106462	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148053	ENSG00000188385	.	.	upstream	downstream	mismatches(1)	.	.	.
AXL	AC002472.4(8665),BCRP2(13333)	+/.	./.	19:41230109	22:21089683	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000167601	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC079760.1	FP671120.3(594),FP671120.7(3849)	-/.	./.	7:91494892	21:8250743	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235450	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UNC5B	MIR663AHG	+/.	-/.	10:71213252	20:26208397	intron	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000107731	ENSG00000227195	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CRADD	AC068787.1(14544),AC068787.3(6502)	+/.	./.	12:93846251	12:127477741	intron	intergenic	inversion	0	0	0	24	6	low	.	.	.	.	.	ENSG00000169372	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PIBF1	RNA5SP433(31656),WFDC1(262)	+/.	./.	13:72943717	16:84294584	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000083535	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP433(31656),WFDC1(262)	LINC01524	./.	+/.	16:84294584	20:52324163	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000234948	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
BRD7	BACH1	-/-	+/-	16:50318705	21:29263475	3'UTR	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	Bromodomain(100%),Domain_of_unknown_function_(DUF3512)(100%)|	.	.	ENSG00000166164	ENSG00000156273	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01348	KRT18P55	-/.	-/.	1:235071089	17:28307146	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000280587	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
SCARB2	RAMP3(65696),AC073968.2(16683)	-/.	./.	4:76202645	7:45251998	intron	intergenic	translocation	0	0	0	0	87	low	.	.	.	.	.	ENSG00000138760	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
OR2L1P(2548),Y_RNA(3248)	OR2L1P(2559),Y_RNA(3237)	./.	./.	1:247993752	1:247993763	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262475	6:42262483	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RIPK4	CLIP3	-/-	-/-	21:41749191	19:36026173	CDS	CDS	translocation	0	0	0	0	23	low	.	.	Protein_kinase_domain(73%)|Ankyrin_repeats_(3_copies)(10%),CAP-Gly_domain(100%)	.	.	ENSG00000183421	ENSG00000105270	.	.	upstream	downstream	mismatches(1)	.	.	.
TSHZ2	AP001599.1	+/.	+/.	20:52972658	21:26914103	5'UTR	intron	translocation	0	0	0	2	167	low	.	.	.	.	.	ENSG00000182463	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
SIPA1L3	FP236383.3	+/.	+/.	19:38061877	21:8444813	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000105738	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PNKD	RPL21P12(17605),GCSHP2(17191)	+/.	./.	2:218270568	14:103167013	CDS	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000127838	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC107892.1(122113),AC087399.1(217549)	MT-RNR2	./.	+/.	18:78263000	MT:2445	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
INSRR	AC103764.1(47896),RPL23AP56(49032)	-/.	./.	1:156849597	8:134929795	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000027644	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	PCDH11Y	+/.	+/.	21:8441654	Y:5332831	intron	intron	translocation/3'-3'	0	0	0	546	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000099715	.	.	upstream	upstream	mismatches(1)	.	.	.
SCARB2	MT-RNR2	-/.	+/.	4:76202645	MT:2445	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000138760	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	IL3RA	./.	+/.	15:26358594	X:1354866	intergenic	intron	translocation	0	0	0	71	18	low	.	.	.	.	.	.	ENSG00000185291	.	.	downstream	downstream	duplicates(7),mismatches(2)	.	.	.
ACTR2	MT-RNR2	+/.	+/.	2:65267358	MT:2445	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000138071	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
LINC01320	FP236383.3	+/.	+/.	2:33767496	21:8400368	intron	intron	translocation	0	0	0	72	0	low	.	.	.	.	.	ENSG00000228262	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HECW1	AC244102.4	+/.	-/.	7:43336198	X:152576450	intron	intron	translocation/5'-5'	0	0	0	25	7	low	.	.	.	.	.	ENSG00000002746	ENSG00000287394	.	.	downstream	upstream	mismatches	.	.	.
LINC01320	FP671120.4	+/.	+/.	2:33767496	21:8217333	intron	intron	translocation	0	0	0	72	4	low	.	.	.	.	.	ENSG00000228262	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC093875.1(209856),LINC02511(32324)	AP000229.1(18518),AP001595.2(81491)	./.	./.	4:136763595	21:26235899	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021146.5	FP671120.4	-/.	+/.	4:68986258	21:8214396	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000249735	ENSG00000278996	.	.	upstream	upstream	duplicates(4),mismatches(3)	.	.	.
LINC01320	FP236383.3	+/.	+/.	2:33767496	21:8444603	intron	intron	translocation	0	0	0	72	0	low	.	.	.	.	.	ENSG00000228262	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDC27P1(3882),AC097532.1(18871)	TAF7	./.	-/.	2:132266924	5:141263612	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000178913	.	.	downstream	downstream	mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650925	21:8400368	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHFR	FP671120.4	-/.	+/.	5:80650925	21:8217333	intron	intron	translocation/3'-3'	0	0	0	81	4	low	.	.	.	.	.	ENSG00000228716	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96618113	21:8400368	5'UTR	intron	translocation/3'-3'	0	0	0	75	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8400368	MT:1793	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
RAMP3(65701),AC073968.2(16678)	AC087482.1	./.	-/.	7:45252003	15:67040912	intergenic	intron	translocation	0	0	0	71	8	low	.	.	.	.	.	.	ENSG00000259347	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010230.1	NUP50	-/.	+/.	5:114543700	22:45164252	intron	5'UTR	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000246316	ENSG00000093000	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8217333	MT:1793	intron	exon	translocation/3'-3'	0	0	0	4	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
GYG1	FP671120.4	+/.	+/.	3:149003468	21:8211443	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000163754	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC91	ALOX15(16236),PELP1(11244)	+/.	./.	12:28556284	17:4658530	intron	intergenic	translocation	0	0	0	12	5	low	.	.	.	.	.	ENSG00000123106	.	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
AC090816.1(3058),RNA5SP261(48306)	ZNF586	./.	+/.	8:31549793	19:57778363	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000083828	.	.	downstream	upstream	mismatches(1)	.	.	.
AL353600.2(169307),LINC02628(18689)	DIP2A(27614),S100B(975)	./.	./.	10:33560242	21:46597629	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC077690.1(10581),LMCD1-AS1(150200)	FP671120.4	./.	+/.	3:7801063	21:8214795	intergenic	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
MCC	LGALS3BP	-/-	-/-	5:113099119	17:78973001	intron	CDS	translocation	0	0	0	0	4	low	.	.	EF-hand_domain_pair(100%)|BTB_And_C-terminal_Kelch(100%)	.	.	ENSG00000171444	ENSG00000108679	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
TLX3(3078),AC091980.1(30126)	CLIP3	./.	-/.	5:171315217	19:36026173	intergenic	CDS	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000105270	.	.	downstream	downstream	mismatches(1)	.	.	.
FAM86B3P(53798),PRAG1(19073)	BPY2C	./.	-/.	8:8298663	Y:25044576	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000185894	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8444603	MT:1793	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
FP671120.4(3813),FP671120.10(3895)	FP236383.3	./.	+/.	21:8231459	21:8400424	intergenic	intron	deletion/read-through	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092343	11:88092436	intron	intron	duplication/ITD	0	0	0	1170	1059	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
ARAP2	FP671120.4	-/.	+/.	4:36080800	21:8214397	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000047365	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
C16orf95	BICC1	-/-	+/-	16:87317154	10:58688003	CDS	intron	translocation/5'-5'	0	0	0	0	87	low	.	.	.	.	.	ENSG00000260456	ENSG00000122870	.	.	upstream	downstream	mismatches(3)	.	.	.
AUTS2	LAMA5	+/.	-/.	7:70496732	20:62337135	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000158321	ENSG00000130702	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	TATDN2	-/-	+/+	11:9003964	3:10249513	5'UTR	CDS	translocation	0	0	0	0	0	low	.	.	|TatD_related_DNase(100%)	.	.	ENSG00000175352	ENSG00000157014	.	.	upstream	upstream	duplicates(1),mismatches(4)	.	.	.
FAM166C	PCAT1	+/.	+/.	2:26563173	8:127115208	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000173557	ENSG00000253438	.	.	upstream	upstream	mismatches(1)	.	.	.
NUDT12(105223),AC008505.1(212116)	GRM3	./.	+/.	5:103668013	7:86815868	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000198822	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MFSD9	SNX1	-/.	+/.	2:102719362	15:64095912	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000135953	ENSG00000028528	.	.	downstream	upstream	mismatches(1)	.	.	.
FREM1	FREM1	-/.	-/.	9:14774515	9:14774526	intron	intron	duplication/ITD	0	0	0	8	4	low	.	.	.	.	.	ENSG00000164946	ENSG00000164946	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SNAP47	AC004687.2	+/.	-/.	1:227740052	17:58385559	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143740	ENSG00000285897	.	.	upstream	downstream	mismatches(1)	.	.	.
SGCZ	NOS1	-/.	-/.	8:14216767	12:117326664	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000185053	ENSG00000089250	.	.	upstream	downstream	mismatches(1)	.	.	.
SGCZ	RPL14P5(31331),CRLF2(146117)	-/.	./.	8:14216766	X:1041432	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185053	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GLI3	EDNRB	-/.	-/.	7:42037806	13:77929420	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000106571	ENSG00000136160	.	.	upstream	downstream	mismatches(1)	.	.	.
ATP5MC2P2(93908),RNA5SP384(84342)	5_8S_rRNA(2076),FP236383.3(121634)	./.	./.	14:49468291	21:8259009	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CCM2L	FP236383.3	+/+	+/+	20:32014991	21:8399950	CDS	intron	translocation	0	0	0	0	205	low	.	.	.	.	.	ENSG00000101331	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SNAP47	SGCZ	+/.	-/.	1:227740052	8:14216765	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143740	ENSG00000185053	.	.	upstream	upstream	mismatches(1)	.	.	.
ALDH7A1P3(16965),GIMAP4(8306)	PRUNE2	./.	-/.	7:150559063	9:76808399	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000106772	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SNAP47	AL589740.1	+/.	+/.	1:227740052	6:97984483	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143740	ENSG00000271860	.	.	upstream	upstream	mismatches(1)	.	.	.
GRIA2(140759),AC093817.2(61897)	RGS6	./.	+/.	4:157506834	14:72111283	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000182732	.	.	upstream	downstream	mismatches(1)	.	.	.
MFSD9	NOS1	-/.	-/.	2:102719362	12:117326664	intron	intron	translocation/3'-3'	0	0	0	4	7	low	.	.	.	.	.	ENSG00000135953	ENSG00000089250	.	.	downstream	downstream	mismatches(1)	.	.	.
DIXDC1	NOS1	+/.	-/.	11:111932709	12:117326664	intron	intron	translocation	0	0	0	1	7	low	.	.	.	.	.	ENSG00000150764	ENSG00000089250	.	.	downstream	downstream	mismatches(1)	.	.	.
DIXDC1	RPL14P5(31331),CRLF2(146117)	+/.	./.	11:111932710	X:1041432	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000150764	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RC3H1	NOS1	-/.	-/.	1:173991581	12:117326664	intron	intron	translocation/3'-3'	0	0	0	1	7	low	.	.	.	.	.	ENSG00000135870	ENSG00000089250	.	.	downstream	downstream	mismatches(1)	.	.	.
BAG6	FP671120.4	-/.	+/.	6:31647292	21:8216865	intron	intron	translocation	0	0	0	5	1	low	.	.	.	.	.	ENSG00000204463	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MFSD9	RPL14P5(31332),CRLF2(146116)	-/.	./.	2:102719364	X:1041433	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000135953	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SNAP47	MFSD9	+/.	-/.	1:227740052	2:102719364	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000143740	ENSG00000135953	.	.	upstream	downstream	mismatches(1)	.	.	.
CREB5(21058),TRIL(106406)	RNF166	./.	-/.	7:28846952	16:88700468	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000158717	.	.	downstream	downstream	mismatches(1)	.	.	.
MFSD9	ATP12A	-/.	+/.	2:102719365	13:24694302	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000135953	ENSG00000075673	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX1	RNF43	+/.	-/.	15:64095912	17:58385557	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000028528	ENSG00000108375	.	.	upstream	downstream	mismatches(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	12:105046145	12:105046193	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000151131	.	.	upstream	downstream	duplicates(5),low_entropy(3),merge_adjacent	.	.	.
NOS1	TSPOAP1-AS1	-/.	+/.	12:117326664	17:58385557	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000089250	ENSG00000265148	.	.	downstream	downstream	mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	SPIDR	./.	+/.	6:144085397	8:47680712	intergenic	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	.	ENSG00000164808	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NOS1	RNF43	-/.	-/.	12:117326664	17:58385557	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000089250	ENSG00000108375	.	.	downstream	downstream	mismatches(1)	.	.	.
AC241644.2(8408),AC239801.1(43601)	CDH13	./.	+/.	1:147797361	16:83240630	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000140945	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
PTPRD	GSE1	-/.	+/.	9:10556369	16:85260116	intron	intron	translocation	0	0	0	12	19	low	.	.	.	.	.	ENSG00000153707	ENSG00000131149	.	.	upstream	upstream	mismatches(1)	.	.	.
ITPKB	EEF1B2P2(28127),LINC02219(1856)	-/.	./.	1:226675840	5:68188020	intron	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000143772	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521069	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(8)	.	.	.
CLIP3	ADRA1D(154590),AL139350.1(18309)	-/-	./-	19:36026157	20:4403877	CDS	intergenic	translocation	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL392003.1(6660),RGS4(82322)	AC092674.1	./.	-/.	1:162986453	4:77492350	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000249036	.	.	downstream	downstream	mismatches(1)	.	.	.
AC084759.3	LSM14B	+/+	+/+	15:53910829	20:62131771	exon	intron	translocation	0	0	0	7	0	low	.	.	|FDF_domain(19%)	.	.	ENSG00000280362	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC084759.3(20),AC084759.2(31977)	LSM14B	./.	+/.	15:53914732	20:62131771	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
5_8S_rRNA(2091),FP236383.3(121619)	FP236383.3	./.	+/.	21:8259024	21:8392864	intergenic	intron	inversion	0	0	0	6	43	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC16A11	FP236383.3	-/-	+/+	17:7042731	21:8420128	CDS	intron	translocation	0	0	0	0	0	low	.	.	Major_Facilitator_Superfamily(30%)|	.	.	ENSG00000174326	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
XKR6	NRP1	-/-	-/-	8:10898300	10:33334709	CDS	5'UTR	translocation	0	0	0	0	21	low	.	.	XK-related_protein(100%)|C-terminal_domain_of_neuropilin_glycoprotein(100%),CUB_domain(100%),F5/8_type_C_domain(100%),MAM_domain__meprin/A5/mu(100%)	.	.	ENSG00000171044	ENSG00000099250	.	.	upstream	downstream	mismatches(1)	.	.	.
CLASP1	MTCYBP36	-/.	-/.	2:121357460	6:94447030	intron	exon	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000074054	ENSG00000216853	.	.	downstream	downstream	mismatches(1)	.	.	.
GTF2IRD1P1	LSM14B	-/.	+/.	7:66824572	20:62131771	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000230583	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC115220.1	AC009161.1(206459),AC009110.1(32167)	+/+	./-	7:64112668	16:62564205	exon	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000285544	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683470	15:81683479	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
AC104109.3	LSM14B	-/.	+/.	5:134225645	20:62131771	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272772	ENSG00000149657	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092100.1	HELLPAR	-/.	+/.	7:69204254	12:102292424	intron	exon	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000225718	ENSG00000281344	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	COL6A1	./.	+/.	2:218108703	21:45986698	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000142156	.	.	downstream	upstream	duplicates(4),homopolymer(3)	.	.	.
AC104109.4	LIN52(32937),VSX2(5277)	-/.	./.	5:134225646	14:74234172	intron	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000273345	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
KIAA2012	PPP2CA	+/.	-/.	2:202083777	5:134225648	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000113575	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
KIAA2012	AC104109.4	+/.	-/.	2:202083777	5:134225648	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000273345	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
KIAA2012-AS1	AC104109.3	-/.	-/.	2:202083777	5:134225648	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000272772	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
GPC6	GPC6	+/.	+/.	13:93833099	13:93833158	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000183098	ENSG00000183098	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC025580.2	EEF1A1P38(3819),LINC02129(19453)	+/.	./.	15:45463186	16:27138998	intron	intergenic	translocation	0	0	0	37	1	low	.	.	.	.	.	ENSG00000259354	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KIAA2012-AS1	PPP2CA	-/.	-/.	2:202083777	5:134225648	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000113575	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
DHFR	DHFR	-/.	-/.	5:80650268	5:80650543	intron	intron	inversion/3'-3'	0	0	0	68	8	low	.	.	.	.	.	ENSG00000228716	ENSG00000228716	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA2012-AS1	AC104109.4	-/.	-/.	2:202083777	5:134225648	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000273345	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683464	15:81683473	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(2)	.	.	.
PFN2	RPL10L(115581),MDGA2(72267)	-/.	./.	3:149984027	14:46767362	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000070087	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC007513.1	SYNE3	-/.	-/.	12:96462682	14:95466310	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258272	ENSG00000176438	.	.	downstream	upstream	mismatches(2)	.	.	.
FIBIN(9775),BBOX1(33863)	LSM14B	./.	+/.	11:27006862	20:62131771	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
CDH13	JADE3	+/.	+/.	16:83240630	X:47020464	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140945	ENSG00000102221	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
RN7SKP293(3300),RPL15P3(104029)	FP236383.3	./.	+/.	6:12410081	21:8397434	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL118558.1	MIR663AHG	-/.	-/.	14:102063231	20:26208398	intron	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000258959	ENSG00000227195	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP427(5143),AC007342.2(19305)	FP236383.3	./.	+/.	16:53342714	21:8444134	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262500	6:42262599	intron	intron	duplication/ITD	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(3)	.	.	.
RUFY4(18122),CXCR2(16586)	TPRX1P1(3681),AL133481.3(408)	./.	./.	2:218108703	10:79503665	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48490),TPT1P1(55444)	./.	./.	2:128340558	21:31784897	intergenic	intergenic	translocation	0	0	0	35	149	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
CDH8(89412),RNU6-21P(61093)	CDH8(89454),RNU6-21P(61051)	./.	./.	16:62126447	16:62126489	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
CROCC2(5262),SNED1(45)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	2:240998573	21:8259024	intergenic	intergenic	translocation	0	0	0	10	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BAK1P2(57039),MIR8052(62267)	ARHGEF40	./.	+/.	11:130604468	14:21071327	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165801	.	.	upstream	upstream	mismatches(1)	.	.	.
CDH8(89412),RNU6-21P(61093)	CDH8(89464),RNU6-21P(61041)	./.	./.	16:62126447	16:62126499	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
DLGAP2	FP236383.3	+/.	+/.	8:837041	21:8397818	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000198010	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
C4orf47	LINC02535(35284),DUTP5(1187)	+/+	./+	4:185426367	6:85425470	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000205129	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022335.1	FP236383.3	+/.	+/.	12:21146487	21:8445488	intron	intron	translocation	0	0	0	7	6	low	.	.	.	.	.	ENSG00000257062	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00421	RFLNB	+/.	-/.	13:19346266	17:441449	exon	3'UTR	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000236834	ENSG00000183688	.	.	upstream	downstream	mismatches(1)	.	.	.
SIAH1P1	RFLNB	+/+	-/-	X:35626741	17:441449	exon	3'UTR	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000230227	ENSG00000183688	.	.	downstream	downstream	mismatches(1)	.	.	.
MICOS10	FP671120.4	+/.	+/.	1:19543428	21:8214192	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173436	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
TSPOAP1-AS1	FP236383.3	+/.	+/.	17:58385557	21:8396371	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HSPG2	LINC02535(35303),DUTP5(1168)	-/-	./-	1:21864953	6:85425489	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	Immunoglobulin_domain(8%),Laminin_B_(Domain_IV)(94%),Laminin_EGF_domain(68%),Low-density_lipoprotein_receptor_domain_class_A(100%)|	.	.	ENSG00000142798	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP002963.1(114323),AP003973.4(21952)	PDP2(7417),CDH16(4951)	./.	./.	11:110991500	16:66903171	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3422),ELMOD1(766)	AP001823.1(3521),ELMOD1(667)	./.	./.	11:107590325	11:107590424	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC02814	PDP2(7415),CDH16(4953)	-/.	./.	1:229088263	16:66903169	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236975	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC16A11	FP236383.3(930),FP236383.11(6598)	-/-	./+	17:7042732	21:8455722	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Major_Facilitator_Superfamily(30%)|	.	.	ENSG00000174326	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GPS1	FP671120.4	+/.	+/.	17:82055709	21:8211701	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169727	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092100.1	NFIB	-/.	-/.	7:69204253	9:14320877	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000225718	ENSG00000147862	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104777.1	DHRSX	-/.	-/.	2:150617538	X:2225751	intron	intron	translocation/5'-5'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000169084	.	.	upstream	upstream	mismatches(1)	.	.	.
MRC2	MAP1LC3BP1(11866),SLC24A2(31062)	+/+	./-	17:62689981	9:19476390	CDS	intergenic	translocation	0	0	0	9	4	low	.	.	Fibronectin_type_II_domain(100%),Lectin_C-type_domain(85%)|	.	.	ENSG00000011028	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CACNA1E	MAP1LC3BP1(11864),SLC24A2(31064)	+/.	./.	1:181644874	9:19476388	intron	intergenic	translocation	0	0	0	1	4	low	.	.	.	.	.	ENSG00000198216	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016822.1	FP236383.3	-/.	+/.	10:55291108	21:8400245	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236744	ENSG00000280441	.	.	downstream	upstream	duplicates(8),homopolymer(1)	.	.	.
KIAA2012	MAP1LC3BP1(11864),SLC24A2(31064)	+/.	./.	2:202083777	9:19476388	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000182329	.	.	.	downstream	downstream	mismatches(1)	.	.	.
EMBP1	DDB2	+/.	+/.	1:121526486	11:47233105	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000231752	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA2012-AS1	MAP1LC3BP1(11864),SLC24A2(31064)	-/.	./.	2:202083777	9:19476388	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NRG1	NRG1	+/.	+/.	8:32786125	8:32786140	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000157168	ENSG00000157168	.	.	upstream	downstream	low_entropy(1)	.	.	.
MARCHF6	ISLR2(11434),AC010931.2(2826)	+/.	./.	5:10355510	15:74149974	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145495	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IKZF1(6399),RNU6-1091P(23880)	LINC00866	./.	-/.	7:50411500	10:97837187	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000227356	.	.	upstream	upstream	mismatches(1)	.	.	.
MARCHF6	ZP3	+/.	+/.	5:10355510	7:76418636	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145495	ENSG00000188372	.	.	downstream	upstream	mismatches(1)	.	.	.
HNRNPA3P8(184085),AC108740.1(40762)	BICC1	./.	+/.	3:80401319	10:58688002	intergenic	intron	translocation	0	0	0	0	87	low	.	.	.	.	.	.	ENSG00000122870	.	.	downstream	downstream	duplicates(1),homopolymer(2)	.	.	.
MARCHF6	AL034372.1(4252),CAP2(7133)	+/.	./.	5:10355510	6:17386372	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145495	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PSME2P2(14120),AL161421.1(189020)	PSME2P2(14131),AL161421.1(189009)	./.	./.	13:48785947	13:48785958	intergenic	intergenic	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(4)	.	.	.
CFAP58	AP001994.3	+/.	+/.	10:104396370	11:119908151	intron	intron	translocation	0	0	0	558	0	low	.	.	.	.	.	ENSG00000120051	ENSG00000288047	.	.	upstream	downstream	low_entropy(13)	.	.	.
RNU6-728P(25126),PLEKHA1(3777)	AL355338.1	./.	-/.	10:122370919	13:99977702	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000288060	.	.	downstream	downstream	mismatches(1)	.	.	.
ADAMTS5(58793),GPX1P2(117463)	HDHD5-AS1(6342),ADA2(7003)	./.	./.	21:27025881	22:17171787	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LINC02693	ADAMTS5(58793),GPX1P2(117463)	-/-	./+	17:21551449	21:27025881	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000212719	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ABBA01000935.2	PDHX	-/.	+/.	3:91399945	11:35010408	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283544	ENSG00000110435	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC91(237581),AC022081.1(2883)	AC012150.1	./.	-/.	12:28819092	12:29149772	intergenic	intron	deletion/read-through	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000257258	.	.	downstream	upstream	low_entropy(1)	.	.	.
PRIM2	Y_RNA(29987),AC093813.1(47337)	+/.	./.	6:57622959	7:156216210	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000146143	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092944.1	ABCC4	+/.	-/.	3:157252490	13:95029270	intron	intron	translocation/3'-3'	0	0	0	26	7	low	.	.	.	.	.	ENSG00000243176	ENSG00000125257	.	.	upstream	downstream	low_entropy	.	.	.
SUPT5H	SUPT5H	+/+	+/+	19:39458246	19:39458232	exon	exon	duplication/ITD	0	0	0	24	24	low	.	.	Spt5_transcription_elongation_factor__acidic_N-terminal(28%)|Early_transcription_elongation_factor_of_RNA_pol_II__NGN_section(100%),KOW_motif(100%),Spt5_transcription_elongation_factor__acidic_N-terminal(71%)	.	.	ENSG00000196235	ENSG00000196235	.	.	downstream	upstream	duplicates(10),low_entropy(3)	.	.	.
GAD2(21428),AL355798.1(53048)	FP671120.4	./.	+/.	10:26325986	21:8214193	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP3K7(258415),AL080284.1(544826)	MAP3K7(258423),AL080284.1(544818)	./.	./.	6:90845487	6:90845495	intergenic	intergenic	duplication/ITD	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
Y_RNA(29987),AC093813.1(47337)	DCC	./.	+/.	7:156216210	18:52708726	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000187323	.	.	downstream	upstream	mismatches(1)	.	.	.
RHBG	KDM5A	+/.	-/.	1:156380331	12:355053	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000132677	ENSG00000073614	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479894	14:106419138	intron	intergenic	translocation	0	0	0	2216	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
B4GALT4-AS1	BRD4	+/.	-/.	3:119280652	19:15308155	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000240254	ENSG00000141867	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
MIR3148(37078),MAP2K1P1(33287)	ETV4	./.	-/.	8:29994426	17:43546409	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175832	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNMBP	BRD4	-/.	-/.	10:99948205	19:15308155	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000107554	ENSG00000141867	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
CARMN(7002),CSNK1A1(53145)	AC079949.3	./.	+/.	5:149439837	12:127165978	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000286016	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	RNU1-27P(7250),RNU1-28P(2099)	+/.	./.	11:47233105	14:34554127	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CASZ1	DNMBP	-/.	-/.	1:10792333	10:99948205	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130940	ENSG00000107554	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC064874.1	RNU6-114P(12215),PRKX(19164)	-/.	./.	2:235775619	X:3585176	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222007	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LYPD6	AC006499.8(7830),RAF1P1(8861)	+/.	./.	2:149421961	4:10246065	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187123	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009161.1(206459),AC009110.1(32167)	FP236383.3	./.	+/.	16:62564205	21:8397439	intergenic	intron	translocation	0	0	0	21	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TNFRSF8(4018),MIR7846(18718)	SLX4IP	./.	+/.	1:12148225	20:10544176	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000149346	.	.	upstream	upstream	homopolymer(1)	.	.	.
DNMBP	PRPS1(58576),TSC22D3(2652)	-/.	./.	10:99948205	X:107710569	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107554	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SLC25A12	FAT1(23081),AC108865.1(141166)	-/.	./.	2:171912425	4:186749803	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115840	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNMBP-AS1	ACTN1-AS1	+/.	+/.	10:99948205	14:68979860	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000227695	ENSG00000259062	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
DNMBP	ARHGEF7	-/.	+/.	10:99948205	13:111123867	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107554	ENSG00000102606	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
DNMBP-AS1	ARHGEF7	+/.	+/.	10:99948205	13:111123867	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227695	ENSG00000102606	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
DNMBP-AS1	ARHGEF7-IT1	+/.	+/.	10:99948205	13:111123867	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227695	ENSG00000233644	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
DNMBP-AS1	LIG1	+/.	-/.	10:99948205	19:48169913	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227695	ENSG00000105486	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
IGKV1OR2-11(15911),AC092683.1(13886)	FP236383.3	./.	+/.	2:97402279	21:8397821	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L5	MTRNR2L1	+/.	+/.	10:55599444	17:22523879	5'UTR	5'UTR	translocation/3'-3'	0	0	0	8	4	low	.	.	.	.	.	ENSG00000249860	ENSG00000256618	.	.	upstream	upstream	mismatches(1)	.	.	.
MATN1-AS1	DNMBP	+/.	-/.	1:30718592	10:99948205	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186056	ENSG00000107554	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
STEAP1B	AP003390.1(4500),AP001994.1(77181)	-/.	./.	7:22587137	11:119744123	intron	intergenic	translocation	0	0	0	4	3002	low	.	.	.	.	.	ENSG00000105889	.	.	.	downstream	downstream	mismatches	.	.	.
AC104123.1	LINC02459(32870),TBX5(79271)	+/.	./.	5:96361268	12:114274640	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4504),AP001994.1(77177)	FXNP1(22680),NRXN3(87415)	./.	./.	11:119744127	14:78082958	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
B4GALT4-AS1	NKX6-2(1634),CFAP46(20611)	+/.	./.	3:119280652	10:132787781	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000240254	.	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
WBP2P1(16401),AC104961.1(21995)	WBP2P1(16500),AC104961.1(21896)	./.	./.	18:25033605	18:25033704	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
YES1	B4GALT4-AS1	-/-	+/-	18:812332	3:119280652	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000176105	ENSG00000240254	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AC022215.2	AC022215.2	-/.	-/.	3:141268163	3:141268207	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000287155	ENSG00000287155	.	.	upstream	downstream	low_entropy(1)	.	.	.
B4GALT4-AS1	ARHGEF7	+/.	+/.	3:119280652	13:111123867	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000240254	ENSG00000102606	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
MATN1-AS1	B4GALT4-AS1	+/.	+/.	1:30718592	3:119280652	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186056	ENSG00000240254	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AC009487.1	ZNHIT2	-/.	-/.	2:161423441	11:65116957	exon	CDS	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224076	ENSG00000174276	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC079950.1(25950),AC008124.1(81476)	FAM156B(3179),AC234031.1(14217)	./.	./.	12:45636570	X:52911739	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PPM1L	AC022826.2	+/.	-/.	3:161057700	8:73820101	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163590	ENSG00000258677	.	.	upstream	upstream	mismatches(1)	.	.	.
AC073612.1	HYDIN	+/.	-/.	12:71698816	16:71158143	intron	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	ENSG00000258064	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC00486	FRMD5(93319),GOLM2(129)	+/.	./.	2:32916256	15:44288590	intron	intergenic	translocation	0	0	0	90	3	low	.	.	.	.	.	ENSG00000230876	.	.	.	upstream	downstream	mismatches	.	.	.
FXNP1(22672),NRXN3(87423)	FXNP1(22770),NRXN3(87325)	./.	./.	14:78082950	14:78083048	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
RNU6-1312P(86506),CRLF3P3(286792)	AC009997.1(47927),NEDD4(32228)	./.	./.	2:83744348	15:55794694	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	CSAG3	+/.	+/.	2:32916256	X:152576445	intron	intergenic	translocation/3'-3'	0	0	0	90	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000268916	.	.	upstream	upstream	mismatches	.	.	.
TBC1D17	APOBEC3H(13753),CBX7(2347)	+/.	./.	19:49888369	22:39117820	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000104946	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL135923.2(21358),PTPRD(331664)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	9:7982582	21:8258619	intergenic	intergenic	translocation	0	0	0	2	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ENPEP	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	4:110510468	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000138792	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PAUPAR	FP236383.3	+/.	+/.	11:31981345	21:8444809	intron	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000281880	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	RGN(25227),RNU12-2P(14130)	+/.	./.	21:8441654	X:47118541	intron	intergenic	translocation	0	0	0	546	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1686),FP236383.3(122024)	RGN(25227),RNU12-2P(14130)	./.	./.	21:8258619	X:47118541	intergenic	intergenic	translocation	0	0	0	543	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	TMPRSS13(31964),IL10RA(24947)	-/.	./.	11:85484188	11:117961423	intron	intergenic	inversion	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EMCN	EMCN	-/.	-/.	4:100459169	4:100459184	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000164035	ENSG00000164035	.	.	upstream	downstream	duplicates(1)	.	.	.
AC012501.2(18059),DNAJA1P2(150103)	FP671120.7(393),5_8S_rRNA(874)	./.	./.	2:153611347	21:8255907	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
CSF1R	ANP32B	-/.	+/.	5:150101514	9:97983497	intron	5'UTR	translocation	0	0	0	8	8	low	.	.	.	.	.	ENSG00000182578	ENSG00000136938	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	GNL3L	+/.	+/.	21:8389581	X:54578338	intron	intron	translocation	0	0	0	0	42	low	.	.	.	.	.	ENSG00000280441	ENSG00000130119	.	.	upstream	downstream	mismatches(2)	.	.	.
TMPRSS13(31964),IL10RA(24947)	FP236383.3	./.	+/.	11:117961423	21:8441654	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF3CL	FP671120.4	-/.	+/.	16:28391222	21:8214401	intron	intron	translocation/3'-3'	0	0	0	6	8	low	.	.	.	.	.	ENSG00000205609	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
GAPDHP36(72025),RALBP1P1(37974)	FP236383.3	./.	+/.	3:180285133	21:8441654	intergenic	intron	translocation	0	0	0	2	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DCBLD2	DLG2	-/.	-/.	3:98886177	11:85484188	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000057019	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
DCBLD2	FP236383.3	-/.	+/.	3:98886177	21:8441654	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000057019	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GAPDHP36(72025),RALBP1P1(37974)	FP671120.4	./.	+/.	3:180285133	21:8214396	intergenic	intron	translocation	0	0	0	2	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
CTNNA3	FP671120.3(594),FP671120.7(3849)	-/.	./.	10:67222695	21:8250743	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000183230	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	ATP2B3	+/.	+/.	21:8442055	X:153545091	intron	intron	translocation/3'-3'	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000067842	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP2	RMRPP5(96478),RN7SKP120(86598)	-/.	./.	6:142946392	9:25002213	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DCBLD2	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	3:98886177	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000057019	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CALD1	FP236383.3	+/.	+/.	7:134777190	21:8441654	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000122786	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GALNS	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	16:88834648	21:8259010	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000141012	.	.	.	downstream	upstream	mismatches	.	.	.
CALD1	FP671120.4	+/.	+/.	7:134777190	21:8214396	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000122786	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM74(47705),AC104248.1(35829)	FP236383.3	./.	+/.	8:108835299	21:8397817	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
ARID4B	GPR26	-/.	+/.	1:235327619	10:123681685	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000154478	.	.	upstream	downstream	mismatches(1)	.	.	.
IPO9-AS1	IPO9-AS1	-/.	-/.	1:201702673	1:201702688	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000231871	ENSG00000231871	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
AP001823.1(3429),ELMOD1(759)	AP003390.1(4394),AP001994.1(77287)	./.	./.	11:107590332	11:119744017	intergenic	intergenic	inversion	0	0	0	1909	3458	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
CALD1	FP236383.3	+/.	+/.	7:134777190	21:8397434	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000122786	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINGO2	SULF2	-/.	-/.	9:28591647	20:47757536	intron	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000174482	ENSG00000196562	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC12A8	AC023932.1(132580),RNU6-408P(91214)	-/.	./.	3:125150511	18:28957406	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000221955	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CALD1	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	7:134777190	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000122786	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22713),NRXN3(87382)	./.	./.	14:78082946	14:78082991	intergenic	intergenic	duplication/ITD	0	0	0	336	336	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ERI3	KCNIP1	-/.	+/.	1:44320094	5:170676145	intron	intron	translocation	0	0	0	67	2	low	.	.	.	.	.	ENSG00000117419	ENSG00000182132	.	.	downstream	downstream	mismatches(2)	.	.	.
NBPF12	DLG2	+/.	-/.	1:146992619	11:85484188	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000268043	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
NBPF12	FP236383.3	+/.	+/.	1:146992619	21:8441654	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000268043	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GAPDHP36(72025),RALBP1P1(37974)	FP236383.3	./.	+/.	3:180285133	21:8397434	intergenic	intron	translocation	0	0	0	2	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNH2	ALG13	-/-	+/-	7:150947791	X:111681866	CDS	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	ENSG00000101901	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RN7SKP293(3300),RPL15P3(104029)	FP236383.3	./.	+/.	6:12410081	21:8441654	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SKP293(3300),RPL15P3(104029)	FP671120.4	./.	+/.	6:12410081	21:8214396	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SKP293(3300),RPL15P3(104029)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	6:12410081	21:8258619	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
IGHVIII-38-1(817),IGHV4-39(2595)	CYP4F11	./.	-/.	14:106419116	19:15921026	intergenic	intron	translocation	0	0	0	162	1	low	.	.	.	.	.	.	ENSG00000171903	.	.	upstream	upstream	mismatches	.	.	.
GAPDHP36(72025),RALBP1P1(37974)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	3:180285133	21:8258619	intergenic	intergenic	translocation	0	0	0	2	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LILRA1	RAD51B	+/+	+/+	19:54601090	14:68488619	3'UTR	intron	translocation	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	ENSG00000182185	.	.	downstream	upstream	mismatches(1)	.	.	.
AL135923.2(21358),PTPRD(331664)	FP236383.3	./.	+/.	9:7982582	21:8441654	intergenic	intron	translocation	0	0	0	2	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL513321.1(21925),AL592466.1(602)	AC005258.1	./.	+/.	10:65270717	19:2338920	intergenic	intron	translocation	0	0	0	30	15	low	.	.	.	.	.	.	ENSG00000273734	.	.	upstream	downstream	mismatches(1)	.	.	.
AL135923.2(21358),PTPRD(331664)	FP236383.3	./.	+/.	9:7982582	21:8397434	intergenic	intron	translocation	0	0	0	2	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002463.1	RPSAP52	+/.	-/.	7:112751482	12:65767071	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000223646	ENSG00000241749	.	.	upstream	downstream	mismatches(1)	.	.	.
COMMD10	FP236383.3	+/.	+/.	5:116216381	21:8401256	intron	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	ENSG00000145781	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NRG1	FP671120.4	+/.	+/.	8:32548059	21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000157168	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC093720.1(1179),AC021146.8(25342)	NALCN-AS1	./.	+/.	4:68788653	13:100887372	intergenic	intron	translocation	0	0	0	1	2	low	.	.	.	.	.	.	ENSG00000233009	.	.	downstream	downstream	mismatches(1)	.	.	.
IGF2BP2(11683),TRA2B(77833)	TLE4	./.	+/.	3:185836725	9:79572888	intergenic	intron	translocation	0	0	0	3	12	low	.	.	.	.	.	.	ENSG00000106829	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
AL356157.3(30449),AL356157.1(45338)	FP236383.3	./.	+/.	10:44545870	21:8397815	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC01471	LINC01471	-/.	-/.	3:127481428	3:127481441	intron	intron	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	ENSG00000239921	ENSG00000239921	.	.	upstream	downstream	duplicates(13),low_entropy(4)	.	.	.
AC016575.2(51634),U8(66191)	NKX2-2(8624),AL133325.2(7434)	./.	./.	5:15044595	20:21522688	intergenic	intergenic	translocation	0	0	0	4	28	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
CFAP58	AP003390.1(4480),AP001994.1(77201)	+/.	./.	10:104396370	11:119744103	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
LILRA1	CDC20B(51),MCIDAS(46336)	+/+	./+	19:54601090	5:55173228	3'UTR	intergenic	translocation	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT18P16(123476),LINC01170(298915)	PRIM2	./.	+/.	5:123760879	6:57622959	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000146143	.	.	upstream	upstream	mismatches(1)	.	.	.
LILRA1	RNU7-155P(125409),AC118653.1(172711)	+/+	./+	19:54601090	17:71423627	3'UTR	intergenic	translocation	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL391832.3(16783),LINC01348(67892)	FAM20C(23169),FOXL3(6229)	./.	./.	1:234997587	7:283941	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092170.1(239686),AC064856.1(115139)	SHISAL1	./.	-/.	2:117421248	22:44309231	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000138944	.	.	upstream	downstream	mismatches(1)	.	.	.
LILRA1	TET3	+/+	+/+	19:54601090	2:74002355	3'UTR	intron	translocation	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|Oxygenase_domain_of_the_2OGFeDO_superfamily_(100%)	.	.	ENSG00000104974	ENSG00000187605	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092170.1(239686),AC064856.1(115139)	CDC20B(51),MCIDAS(46336)	./.	./.	2:117421248	5:55173228	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PEBP4	AL163974.1(22793),LINC00523(45131)	-/.	./.	8:22777914	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000134020	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LILRA1	LINC01514(17915),LBX1(14133)	+/+	./-	19:54601090	10:101212062	3'UTR	intergenic	translocation	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	.	.	.	downstream	downstream	mismatches(1)	.	.	.
JAK2	MT-RNR2	+/.	+/.	9:5092747	MT:2442	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000096968	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SMARCAL1	ATXN2	+/+	-/-	2:216451038	12:111590417	CDS	intron	translocation	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|Ataxin-2_C-terminal_region(100%),Ataxin_2_SM_domain(100%),LsmAD_domain(100%)	.	.	ENSG00000138375	ENSG00000204842	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00692(18212),RPEP2(123709)	EXOC1	./.	+/.	3:25891960	4:55856087	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000090989	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC01514(17915),LBX1(14133)	DHRS2(46906),AL160237.1(7252)	./.	./.	10:101212062	14:23692545	intergenic	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009301.1(3953),GALNT14(9127)	FP236383.3	./.	+/.	2:30901340	21:8400582	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL139246.1	AC092170.1(239686),AC064856.1(115139)	-/-	./+	1:2492563	2:117421248	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000224387	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC092170.1(239686),AC064856.1(115139)	RAD51B	./.	+/.	2:117421248	14:68488619	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182185	.	.	upstream	upstream	mismatches(1)	.	.	.
ANKRD44	MGAT4C	-/.	-/.	2:197346325	12:86388202	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000065413	ENSG00000182050	.	.	downstream	upstream	mismatches(1)	.	.	.
CDC20B(51),MCIDAS(46336)	DHRS2(46906),AL160237.1(7252)	./.	./.	5:55173228	14:23692545	intergenic	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL158151.3	FP671120.4	+/.	+/.	9:129178735	21:8214795	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000235007	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DNAH14	AP003390.1(4502),AP001994.1(77179)	+/.	./.	1:225078866	11:119744125	intron	intergenic	translocation	0	0	0	171	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	low_entropy	.	.	.
DHRS2(46906),AL160237.1(7252)	LINC01399	./.	-/.	14:23692545	22:35143066	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000233080	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4505),AP001994.1(77176)	+/.	./.	1:225078882	11:119744128	intron	intergenic	translocation	0	0	0	158	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DHRS2(46906),AL160237.1(7252)	RAD51B	./.	+/.	14:23692545	14:68488619	intergenic	intron	deletion	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000182185	.	.	downstream	upstream	mismatches(1)	.	.	.
SUGCT(37661),LINC01450(66243)	FP236383.3	./.	+/.	7:40898424	21:8442061	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LILRA1	COL27A1	+/+	+/-	19:54601090	9:114183192	3'UTR	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	ENSG00000196739	.	.	downstream	downstream	mismatches(1)	.	.	.
LILRA1	AC094105.2	+/+	+/-	19:54601090	5:2957507	3'UTR	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|	.	.	ENSG00000104974	ENSG00000248736	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	17:39481627	17:39481710	intron	intron	duplication/ITD	0	0	0	34	34	low	.	.	.	.	.	ENSG00000167258	ENSG00000167258	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CTD-2297D10.2	FP671120.4	-/.	+/.	5:5133201	21:8214781	exon	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000250579	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
AC092170.1(239686),AC064856.1(115139)	AC094105.2	./.	+/.	2:117421248	5:2957507	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000248736	.	.	upstream	downstream	mismatches(1)	.	.	.
AC044893.1(92009),RN7SKP294(9027)	FP236383.3	./.	+/.	8:49321183	21:8445201	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CDC20B(50),MCIDAS(46337)	AL591368.1	./.	+/.	5:55173227	9:81691915	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000233926	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP7D2	MAP7D2	-/.	-/.	X:20027697	X:20027791	intron	intron	duplication/ITD	0	0	0	0	3	low	.	.	.	.	.	ENSG00000184368	ENSG00000184368	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
CDC20B(50),MCIDAS(46337)	RRP1B	./.	+/.	5:55173227	21:43693972	intergenic	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000160208	.	.	upstream	upstream	mismatches(1)	.	.	.
LILRA1	EIF5A	+/+	+/+	19:54601090	17:7309069	3'UTR	intron	translocation	0	0	0	12	0	low	.	.	Immunoglobulin_domain(100%)|Eukaryotic_elongation_factor_5A_hypusine__DNA-binding_OB_fold(100%)	.	.	ENSG00000104974	ENSG00000132507	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	AP001823.1(3436),ELMOD1(752)	+/.	./.	10:104396370	11:107590339	intron	intergenic	translocation	0	0	0	558	1909	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
AC092170.1(239686),AC064856.1(115139)	EIF5A	./.	+/.	2:117421248	17:7309069	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000132507	.	.	upstream	upstream	mismatches(1)	.	.	.
DHRS2(46906),AL160237.1(7252)	EIF5A	./.	+/.	14:23692545	17:7309069	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000132507	.	.	downstream	upstream	mismatches(1)	.	.	.
SLIT3	CBSL	-/-	-/-	5:168749479	21:6450546	CDS	CDS	translocation	0	0	0	4	0	low	.	.	Leucine_rich_repeat(79%),Leucine_rich_repeat_C-terminal_domain(73%),Leucine_rich_repeat_N-terminal_domain(67%)|CBS_domain(56%)	.	.	ENSG00000184347	ENSG00000274276	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC092169.1(104842),RNU6-649P(13351)	CDX2(8075),URAD(327)	./.	./.	2:4931926	13:27977390	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC008691.1	AC020916.1	+/.	-/.	5:159645741	19:13829913	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000267519	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC013460.1(78041),RNU6ATAC37P(48256)	P2RY1(66613),HMGN2P13(159226)	./.	./.	2:7528585	3:152908052	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097480.2(49410),RN7SL101P(60943)	AC080079.2	./.	-/.	4:28650255	4:165670763	intergenic	intron	deletion	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000287424	.	.	downstream	upstream	mismatches(1)	.	.	.
DTNBP1(49300),ARPC3P5(222424)	MTND2P8(102611),KRT18P24(191058)	./.	./.	6:15712358	9:78845355	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC106868.1(439524),AC098595.1(270965)	FHDC1	./.	+/.	4:30447840	4:152965438	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000137460	.	.	downstream	downstream	mismatches(1)	.	.	.
FHDC1	AL049541.2(5607),RNU7-144P(11074)	+/.	./.	4:152965440	20:48483160	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000137460	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FHDC1	ZBTB4	+/.	-/.	4:152965437	17:7477362	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000137460	ENSG00000174282	.	.	downstream	downstream	mismatches(1)	.	.	.
DHFR	MTRNR2L8	-/.	-/.	5:80650543	11:10508409	intron	5'UTR	translocation/3'-3'	0	0	0	8	70	low	.	.	.	.	.	ENSG00000228716	ENSG00000255823	.	.	downstream	downstream	mismatches(1)	.	.	.
FHDC1	LINC02343	+/.	+/.	4:152965440	13:34467868	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000137460	ENSG00000271850	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4517),AP001994.1(77164)	+/.	./.	1:225078882	11:119744140	intron	intergenic	translocation	0	0	0	158	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
DNAH14	AP003390.1(4506),AP001994.1(77175)	+/.	./.	1:225078882	11:119744129	intron	intergenic	translocation	0	0	0	158	3002	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22766),NRXN3(87329)	./.	./.	14:78082946	14:78083044	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
NPAS3	RAP1GAP2	+/.	+/.	14:33799874	17:2993705	CDS	intron	translocation	0	0	0	102	0	low	.	.	.	.	.	ENSG00000151322	ENSG00000132359	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
AC104232.3(52355),AC087808.1(58763)	NRG3	./.	+/.	8:64914725	10:82804029	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000185737	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GLRX2(15705),CDC73(164)	CSNK1G2	./.	+/.	1:193121819	19:1949461	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000133275	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC068472.1(157820),LINC02726(51566)	CSNK1G2	./.	+/.	11:23679022	19:1949445	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000133275	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
IQCA1L	SLCO5A1	-/.	-/.	7:151202460	8:69690369	intron	intron	translocation/3'-3'	0	0	0	0	53	low	.	.	.	.	.	ENSG00000278685	ENSG00000137571	.	.	downstream	downstream	mismatches(1)	.	.	.
SLCO5A1	UBE2L3	-/.	+/.	8:69690369	22:21613411	intron	intron	translocation	0	0	0	53	2	low	.	.	.	.	.	ENSG00000137571	ENSG00000185651	.	.	downstream	downstream	mismatches(1)	.	.	.
MTND1P27(583),LRP1B(9355)	LINC02549	./.	-/.	2:140222068	6:68230113	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000226497	.	.	downstream	upstream	mismatches(1)	.	.	.
KIF1A	LRRC4B	-/.	-/.	2:240741629	19:50548287	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000130294	ENSG00000131409	.	.	upstream	downstream	mismatches(1)	.	.	.
DYSF	HACD2	+/+	-/-	2:71454040	3:123567942	CDS	intron	translocation	0	0	0	0	0	low	.	.	C2_domain(1%)|Protein_tyrosine_phosphatase-like_protein__PTPLA(95%)	.	.	ENSG00000135636	ENSG00000206527	.	.	downstream	downstream	mismatches(1)	.	.	.
HTR4(140160),ADRB2(9216)	BTBD3(59318),AL109838.1(257381)	./.	./.	5:148817395	20:11985927	intergenic	intergenic	translocation	0	0	0	0	17	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SNX16	AP003390.1(4491),AP001994.1(77190)	-/.	./.	8:81842439	11:119744114	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
SLC25A48	DDB2	+/.	+/.	5:135775888	11:47233103	intron	intron	translocation/5'-5'	0	0	0	1	341	low	.	.	.	.	.	ENSG00000145832	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
IQCA1L	FP671120.4	-/.	+/.	7:151202460	21:8217546	intron	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000278685	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL28	LINC01814	+/+	-/+	19:55386175	2:8583562	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108107	ENSG00000236008	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC108073.3	FP671120.4	-/.	+/.	4:187943696	21:8217546	exon	intron	translocation/3'-3'	0	0	0	13	25	low	.	.	.	.	.	ENSG00000286641	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
INPP4B	SVIL	-/.	-/.	4:142537464	10:29509331	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000109452	ENSG00000197321	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
ZNF10	FP236383.3	+/.	+/.	12:133131392	21:8442049	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000256223	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
KMT2C	AC025580.2	-/.	+/.	7:152384548	15:45463026	intron	intron	translocation/5'-5'	0	0	0	177	71	low	.	.	.	.	.	ENSG00000055609	ENSG00000259354	.	.	upstream	downstream	mismatches	.	.	.
AC140168.1(83871),AC140172.1(80004)	GCNT1	./.	+/.	5:21116716	9:76571859	intergenic	intron	translocation	0	0	0	0	38	low	.	.	.	.	.	.	ENSG00000187210	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092651.2	AC092651.2	+/.	+/.	2:87105973	2:87106030	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000287931	ENSG00000287931	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC021218.1(49387),Y_RNA(170392)	LINC02834(532),AL159996.1(42458)	./.	./.	7:156015730	9:86708839	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396373	10:104396472	intron	intron	duplication/ITD	0	0	0	558	74	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	low_entropy(3)	.	.	.
DNM3	MT-RNR2	+/.	+/.	1:171914940	MT:2226	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000197959	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RPL21P18(19879),RNA5SP362(8628)	RPL21P18(19968),RNA5SP362(8539)	./.	./.	12:66057593	12:66057682	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	small_insert_size	.	.	.
XRCC5	XRCC5	+/.	+/.	2:216187822	2:216187835	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000079246	ENSG00000079246	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP002961.1	ABCD1	-/.	+/.	11:103278165	X:153725239	intron	5'UTR	translocation/3'-3'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000285878	ENSG00000101986	.	.	downstream	upstream	mismatches(1)	.	.	.
PRIM2(153366),AL021368.3(55675)	RPL17(12),SRP72P1(2612)	./.	./.	6:57800216	18:49492535	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LDLRAD1	NKX2-2(8624),AL133325.2(7434)	-/.	./.	1:54015511	20:21522688	intron	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000203985	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC020897.1(84852),AC020912.1(58260)	NKX2-2(8623),AL133325.2(7435)	./.	./.	19:31042044	20:21522687	intergenic	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
LINC00374(116869),AL161423.1(27527)	NKX2-2(8624),AL133325.2(7434)	./.	./.	13:58349986	20:21522688	intergenic	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
GRIN2B	NKX2-2(8624),AL133325.2(7434)	-/.	./.	12:13490536	20:21522688	intron	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000273079	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC013489.2(9288),LINC01586(7716)	AC110588.1(43311),FAM149B1P1(162159)	./.	./.	15:88577850	15:96594828	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
COQ3	NKX2-2(8624),AL133325.2(7434)	-/.	./.	6:99382106	20:21522688	intron	intergenic	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000132423	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
CCNT2-AS1	CCNT2-AS1	-/.	-/.	2:134845513	2:134845524	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000224043	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
HSPA12B	C1orf159	+/+	-/+	20:3738718	1:1082615	intron	3'UTR	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000132622	ENSG00000131591	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDB2	LINC00269(207122),CYCSP43(68297)	+/.	./.	11:47233105	X:69417046	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS2P18(22130),AC092573.1(17577)	CDCA7	./.	+/.	2:173320642	2:173320655	intergenic	intergenic	duplication	0	0	0	4	1	low	.	.	.	.	.	.	ENSG00000144354	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF503-AS1	AC012060.1(92676),LINC02248(36443)	+/.	./.	10:75249177	15:26358594	intron	intergenic	translocation	0	0	0	3	71	low	.	.	.	.	.	ENSG00000226051	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KIAA2012-AS1	CHST15(269175),OAT(34530)	-/.	./.	2:202083779	10:124362773	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000222035	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC093523.1	TCF12	-/.	+/.	5:68879606	15:57216569	intron	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000249335	ENSG00000140262	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(2191),FP236383.3(121519)	FP236383.3	./.	+/.	21:8259124	21:8397817	intergenic	intron	deletion/read-through	0	0	0	79	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
KIAA2012	LTBP2	+/.	-/.	2:202083779	14:74533689	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000119681	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
PLPPR2	KDM4C	+/+	+/+	19:11364147	9:7086288	exon	intron	translocation	0	0	0	0	0	low	.	.	PAP2_superfamily(100%)|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-zinc-finger_like_domain(50%)	.	.	ENSG00000105520	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479893	10:104479908	intron	intron	duplication/ITD	0	0	0	99	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(2)	.	.	.
AC084759.3(20),AC084759.2(31977)	AC005258.1	./.	+/.	15:53914732	19:2338920	intergenic	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	.	ENSG00000273734	.	.	downstream	downstream	mismatches(1)	.	.	.
RN7SL499P(43178),PTMA(17444)	DSCAM	./.	-/.	2:231689451	21:40244937	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000171587	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMEM182(55644),AC073987.1(34215)	KRT18P53(61509),SHOX(17483)	./.	./.	2:103075544	X:606861	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP45	AC105402.1	-/.	-/.	1:159873084	2:148915314	CDS	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000213085	ENSG00000286167	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL449106.1	PARD3B	-/-	+/+	1:178725055	2:205321478	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	ENSG00000116117	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL139190.1(1724),AL358972.1(113155)	MT-RNR2	./.	+/.	6:164233334	MT:2222	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MIR100HG	ALOX15(16236),PELP1(11244)	-/-	./-	11:122100667	17:4658530	exon	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000255248	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AL442636.1	AC044873.1(14233),AC091027.2(97724)	+/.	./.	13:54613615	18:78810905	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287460	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL049612.1(159961),AL603783.1(117959)	MT-RNR2	./.	+/.	6:169970063	MT:2222	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
FP326651.1(1919),Y_RNA(175093)	AP001599.1	./.	+/.	9:65398291	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	TUSC2P2(120150),DLGAP5P2(150249)	+/.	./.	21:8400582	X:92892241	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SMYD2	TRPM5	+/.	-/.	1:214296548	11:2418154	intron	intron	translocation/3'-3'	0	0	0	14	1	low	.	.	.	.	.	ENSG00000143499	ENSG00000070985	.	.	upstream	downstream	homopolymer(1)	.	.	.
SMYD2	FP236383.3	+/.	+/.	1:214296548	21:8441662	intron	intron	translocation/3'-3'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000143499	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC094105.2(147958),LINC01377(61922)	RGMB	./.	+/.	5:3115913	5:98771438	intergenic	intron	deletion	0	0	0	0	26	low	.	.	.	.	.	.	ENSG00000174136	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CCDC192	KRT18P55	+/.	-/.	5:127789123	17:28307146	intron	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000230561	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
SMYD2	FP671120.4	+/.	+/.	1:214296548	21:8214404	intron	intron	translocation/3'-3'	0	0	0	14	8	low	.	.	.	.	.	ENSG00000143499	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
TCF12	SCNN1G	+/.	+/.	15:57216569	16:23199586	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000140262	ENSG00000166828	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
STXBP5-AS1	GABBR2	-/.	-/.	6:146976739	9:98697849	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000233452	ENSG00000136928	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NALCN-AS1	FP236383.3	+/.	+/.	13:100887357	21:8441664	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000233009	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
EXT1(924),SAMD12(76705)	AC025580.2	./.	+/.	8:118112750	15:45462588	intergenic	intron	translocation	0	0	0	16	23	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
UNC5B	FP236383.11(2061),FP236383.6(395)	+/+	./+	10:71293868	21:8464859	CDS	intergenic	translocation	0	0	0	0	4	low	.	.	Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(9%),ZU5_domain(100%)|	.	.	ENSG00000107731	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC010970.1	GCNT2	-/-	+/+	Y:10198672	6:10627254	exon	3'UTR	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000225840	ENSG00000111846	.	.	upstream	upstream	mismatches(1)	.	.	.
AC004882.1	MECP2	-/.	-/.	22:29711529	X:154125517	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000232396	ENSG00000169057	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
UNC5B	FP236383.3	+/+	+/+	10:71293868	21:8420283	CDS	intron	translocation	0	0	0	0	0	low	.	.	Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(9%),ZU5_domain(100%)|	.	.	ENSG00000107731	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
UNC5B	FP236383.11(1894),FP236383.6(562)	+/+	./+	10:71293868	21:8464692	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(9%),ZU5_domain(100%)|	.	.	ENSG00000107731	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NRXN1	IREB2	-/.	+/.	2:49941469	15:78477059	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000179915	ENSG00000136381	.	.	upstream	upstream	mismatches(1)	.	.	.
ARID1B(12702),TMEM242(65544)	FP671120.7(394),5_8S_rRNA(873)	./.	./.	6:157223481	21:8255908	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
UNC5B	FP236383.3	+/+	+/+	10:71293868	21:8420128	CDS	intron	translocation	0	0	0	0	0	low	.	.	Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(9%),ZU5_domain(100%)|	.	.	ENSG00000107731	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF366	GRM3	-/.	+/.	5:72492288	7:86815869	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000178175	ENSG00000198822	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NUDT14(1074),BRF1(26889)	FP236383.3	./.	+/.	14:105182397	21:8411575	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PDS5A	CEP85L	-/.	-/.	4:39875785	6:118506305	intron	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	ENSG00000111860	.	.	downstream	upstream	mismatches(1)	.	.	.
NUDT14(1075),BRF1(26888)	FP236383.11(2061),FP236383.6(395)	./.	./.	14:105182398	21:8464859	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6-576P(10794),LINC00701(94801)	VWA8	./.	-/.	10:2210282	13:41961033	intergenic	5'UTR	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000102763	.	.	downstream	downstream	mismatches(1)	.	.	.
NUDT14(1075),BRF1(26888)	FP236383.3	./.	+/.	14:105182398	21:8420283	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC16A11	FP671120.4(930),FP671120.10(6778)	-/-	./+	17:7042732	21:8228576	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	Major_Facilitator_Superfamily(30%)|	.	.	ENSG00000174326	.	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(524),FP236383.3(123186)	FP236383.3	./.	+/.	21:8257457	21:8438952	intergenic	intron	deletion/read-through	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	PCDH11X	+/.	+/.	21:8441654	X:92108311	intron	intron	translocation/3'-3'	0	0	0	546	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000102290	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	TRERF1	+/.	-/.	1:225078903	6:42262574	intron	intron	translocation	0	0	0	144	2136	low	.	.	.	.	.	ENSG00000185842	ENSG00000124496	.	.	downstream	downstream	mismatches	.	.	.
LINC00841	DHCR7	+/.	-/.	10:43973598	11:71429754	intron	intron	translocation/3'-3'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000233395	ENSG00000172893	.	.	upstream	downstream	mismatches(1)	.	.	.
NOTCH2(12177),RNU6-465P(14018)	SFMBT2	./.	-/.	1:120112956	10:7400841	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000198879	.	.	downstream	upstream	mismatches(1)	.	.	.
NUDT14(1075),BRF1(26888)	FP236383.3	./.	+/.	14:105182398	21:8420128	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8392869	21:8442053	intron	intron	inversion/3'-3'	0	0	0	43	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2)	.	.	.
SLC16A11	FP236383.11(2061),FP236383.6(395)	-/-	./+	17:7042731	21:8464859	CDS	intergenic	translocation	0	0	0	0	4	low	.	.	Major_Facilitator_Superfamily(30%)|	.	.	ENSG00000174326	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UNC5B	FP236383.3	+/+	+/+	10:71293867	21:8411575	CDS	intron	translocation	0	0	0	0	3	low	.	.	Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(9%),ZU5_domain(100%)|	.	.	ENSG00000107731	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC006197.2(36563),AC023513.1(9043)	CFAP54	./.	+/.	12:42060892	12:96563824	intergenic	intron	inversion	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000188596	.	.	downstream	downstream	mismatches(1)	.	.	.
UNC5B	FP671120.4(930),FP671120.10(6778)	+/+	./+	10:71293867	21:8228576	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(9%),ZU5_domain(100%)|	.	.	ENSG00000107731	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC026412.1	AP001599.1	-/.	+/.	5:1602549	21:26914102	exon	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000188002	ENSG00000223563	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
BICC1	FP671120.4	+/.	+/.	10:58688003	21:8214799	intron	intron	translocation	0	0	0	87	5263	low	.	.	.	.	.	ENSG00000122870	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
OXNAD1	Z98752.3	+/.	+/.	3:16298767	20:43556451	intron	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000277611	.	.	downstream	upstream	mismatches(2)	.	.	.
BICC1	CELF4	+/.	-/.	10:58688001	18:37408502	intron	intron	translocation	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000101489	.	.	downstream	downstream	mismatches(1)	.	.	.
SFRP4(58886),STARD3NL(93664)	AC099489.1	./.	-/.	7:38084581	16:11480691	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000188897	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TSPEAR(11743),UBE2G2(45265)	LINC00316(23251),MTCO1P3(10950)	./.	./.	21:44723315	21:45365241	intergenic	intergenic	inversion	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ARMC9	AL606923.2	+/.	-/.	2:231376423	6:68449194	3'UTR	intron	translocation/3'-3'	0	0	0	0	16	low	.	.	.	.	.	ENSG00000135931	ENSG00000288088	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
WDR37(24041),LINC00200(3343)	UPK3A	./.	+/.	10:1156425	22:45294083	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000100373	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092810.2	AGAP1	-/.	+/.	1:209264941	2:235859409	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000232537	ENSG00000157985	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463100	15:45463187	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL035415.1(67837),AC099796.2(25720)	RPS18P6(259149),MTHFD2P1(222897)	./.	./.	1:54488697	3:95431526	intergenic	intergenic	translocation	0	0	0	0	45	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
NOTCH2NLA	SEMA5A	-/.	-/.	1:146199077	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000264343	ENSG00000112902	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092810.2	AC092810.2	-/.	-/.	1:209264941	1:209264961	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	.	.	.	ENSG00000232537	ENSG00000232537	.	.	upstream	downstream	low_entropy(1)	.	.	.
NDST1	VENTXP2(41630),AL590681.1(46762)	+/.	./.	5:150502747	13:83949411	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000070614	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LMCD1-AS1	FP236383.3	-/.	+/.	3:8389579	21:8444816	intron	intron	translocation/3'-3'	0	0	0	0	62	low	.	.	.	.	.	ENSG00000227110	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(3)	.	.	.
PRDM16	NOTCH2(12177),RNU6-465P(14018)	+/.	./.	1:3331292	1:120112956	intron	intergenic	duplication	0	0	0	0	4	low	.	.	.	.	.	ENSG00000142611	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PDS5A	FTHL17(104),DMD(25532)	-/.	./.	4:39875782	X:31072145	intron	intergenic	translocation	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CBWD2	RBM38(6607),AL109955.1(26802)	+/.	./.	2:113437748	20:57415940	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136682	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PRDM16	NOTCH2NLB(44937),RNU6-1171P(14663)	+/.	./.	1:3331292	1:148724716	intron	intergenic	duplication	0	0	0	0	4	low	.	.	.	.	.	ENSG00000142611	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CLIP3	AL158073.1(157483),AL353780.1(19194)	-/-	./-	19:36026157	9:75560475	CDS	intergenic	translocation	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PNPLA7	KIAA0930(6239),AL008718.2(15140)	-/.	./.	9:137486331	22:45247133	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000130653	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LUC7L3	5_8S_rRNA(1979),FP236383.3(121731)	+/.	./.	17:50719772	21:8258912	CDS	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000108848	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC008014.1	UXT-AS1	+/.	+/.	12:46639352	X:47675448	intron	intron	translocation/5'-5'	0	0	0	32	0	low	.	.	.	.	.	ENSG00000257261	ENSG00000267064	.	.	downstream	downstream	mismatches(1)	.	.	.
AC008035.1	UXT-AS1	+/.	+/.	12:46639352	X:47675448	intron	intron	translocation/5'-5'	0	0	0	32	0	low	.	.	.	.	.	ENSG00000272369	ENSG00000267064	.	.	downstream	downstream	mismatches(1)	.	.	.
AL356131.1(332832),MTRNR2L9(185)	FP671120.4	./.	+/.	6:61574143	21:8214404	intergenic	intron	translocation	0	0	0	65	8	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
TFRC	AL135923.2(21360),PTPRD(331662)	-/-	./-	3:196081920	9:7982584	5'UTR	intergenic	translocation	0	0	0	4	2	low	.	.	.	.	.	ENSG00000072274	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02609	OSBPL8	-/.	-/.	1:90839715	12:76529750	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000233593	ENSG00000091039	.	.	upstream	upstream	mismatches(1)	.	.	.
UGT2A1	XKR4(16091),TMEM68(138279)	-/.	./.	4:69642550	8:55558145	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000173610	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL590824.1(655763),TENT5A(278487)	FP671120.4	./.	+/.	6:81212952	21:8216865	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
COL25A1	BHLHB9(13086),LINC00630(2532)	-/.	./.	4:108946347	X:102766626	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188517	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079949.3	5_8S_rRNA(2087),FP236383.3(121623)	+/.	./.	12:127165982	21:8259020	intron	intergenic	translocation	0	0	0	11	5911	low	.	.	.	.	.	ENSG00000286016	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02778(54020),LINC01748(311912)	DACT2	./.	-/.	1:60203804	6:168301834	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000164488	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL590824.1(655763),TENT5A(278487)	FP236383.3	./.	+/.	6:81212952	21:8444134	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	SMIM15P1(74040),PINCR(102558)	+/.	./.	21:8442045	X:43074436	intron	intergenic	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
ADIPOR1P1(38385),EBLN1(4635)	LINC02823(34381),AC090016.1(20793)	./.	./.	10:22204179	12:91402988	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NRXN1	LINC02823(34381),AC090016.1(20793)	-/.	./.	2:51028624	12:91402988	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000179915	.	.	.	downstream	upstream	mismatches(1)	.	.	.
UGT2A1	AC006197.2(36563),AC023513.1(9043)	-/.	./.	4:69642548	12:42060892	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000173610	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02823(34381),AC090016.1(20793)	IREB2	./.	+/.	12:91402988	15:78477060	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000136381	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC41A2	MT-RNR2	-/.	+/.	12:104952395	MT:2440	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136052	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AL627316.1(81781),LINC02787(8733)	CENPP	./.	+/.	1:90502177	9:92531734	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000188312	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DLGAP2	GSE1	+/.	+/.	8:1089845	16:85260116	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000198010	ENSG00000131149	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC009988.1(40556),RPS15AP5(57212)	LINC02823(34381),AC090016.1(20793)	./.	./.	10:121656395	12:91402988	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092343	11:88092440	intron	intron	duplication/ITD	0	0	0	1170	1059	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
RUFY4(18122),CXCR2(16586)	AC136297.1(13055),LINC02689(236)	./.	./.	2:218108703	11:1350123	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
MCTP1	AC009988.1(40555),RPS15AP5(57213)	-/.	./.	5:95035865	10:121656394	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175471	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RGMB	RPSAP52	+/.	-/.	5:98771438	12:65825652	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000174136	ENSG00000241749	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AGBL4	AC080013.1	-/.	+/.	1:49533759	3:158750074	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000186094	ENSG00000240207	.	.	downstream	upstream	mismatches(1)	.	.	.
NRXN1	AC009988.1(40555),RPS15AP5(57213)	-/.	./.	2:49941469	10:121656394	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000179915	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PTPRD	ERVK13-1	-/.	-/.	9:8770682	16:2663080	intron	exon	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000153707	ENSG00000260565	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009299.2	PAQR5	-/.	+/.	2:161267670	15:69399191	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000235724	ENSG00000137819	.	.	downstream	downstream	mismatches(1)	.	.	.
IQCH	SLC16A2(3650),RLIM(45409)	+/.	./.	15:67310422	X:74537567	intron	intergenic	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000103599	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GALNT2	LINC02834(532),AL159996.1(42458)	+/.	./.	1:230187483	9:86708839	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000143641	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PFN2	AC092757.2	-/.	+/.	3:149984027	15:59122737	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000070087	ENSG00000259732	.	.	downstream	downstream	mismatches(1)	.	.	.
IQCH-AS1	SLC16A2(3650),RLIM(45409)	-/.	./.	15:67310422	X:74537567	intron	intergenic	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000259673	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392816	1:90392824	intron	intron	duplication/ITD	0	0	0	312	308	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DTX4	5_8S_rRNA(2086),FP236383.3(121624)	+/+	./+	11:59195361	21:8259019	CDS	intergenic	translocation	0	0	0	4	5911	low	.	.	Deltex_C-terminal_domain(26%),WWE_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|	.	.	ENSG00000110042	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TTLL3(4885),CIDEC(6688)	UBE3C(2773),AC004975.2(9393)	./.	./.	3:9860023	7:157272143	intergenic	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262465	6:42262482	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MTRNR2L12	H3C10	-/.	+/.	3:96617458	6:27810929	5'UTR	3'UTR	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000278828	.	.	downstream	upstream	mismatches(1)	.	.	.
AL591222.3(147700),AL512635.1(215752)	GRIN1	./.	+/.	9:20115694	9:137148066	intergenic	intron	inversion	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000176884	.	.	downstream	downstream	mismatches(1)	.	.	.
ACSL6	AC084768.2(90337),AC087369.1(41556)	-/.	./.	5:132011045	8:5807141	intron	intergenic	translocation	0	1	0	7	0	low	.	.	.	.	.	ENSG00000164398	.	.	.	downstream	upstream	min_support	.	.	.
DHFR	H3C10	-/.	+/.	5:80650270	6:27810929	intron	3'UTR	translocation/3'-3'	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000278828	.	.	downstream	upstream	mismatches(1)	.	.	.
AC013477.1	SMKR1(18216),AC078846.1(73414)	+/.	./.	4:153249122	7:129531134	intron	intergenic	translocation	0	0	0	1	68	low	.	.	.	.	.	ENSG00000288637	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01060	RAMP3(65699),AC073968.2(16680)	+/.	./.	4:188533875	7:45252001	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000249378	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HMMR	THSD4	+/.	+/.	5:163483512	15:71484162	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000072571	ENSG00000187720	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01060	AL356131.1(332832),MTRNR2L9(185)	+/.	./.	4:188533875	6:61574143	intron	intergenic	translocation	0	0	0	0	65	low	.	.	.	.	.	ENSG00000249378	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116366.2	FP671120.4	+/.	+/.	5:132496185	21:8211702	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283782	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
MTRNR2L12	LINC01060	-/.	+/.	3:96617458	4:188533875	5'UTR	intron	translocation	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000249378	.	.	downstream	downstream	mismatches(1)	.	.	.
TPCN2	FP236383.3	+/.	+/.	11:69104798	21:8397827	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000162341	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02217	GMDS	+/.	-/.	5:17419518	6:2000633	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000248455	ENSG00000112699	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01060	MTRNR2L8	+/.	-/.	4:188533875	11:10508411	intron	5'UTR	translocation	0	0	0	0	70	low	.	.	.	.	.	ENSG00000249378	ENSG00000255823	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01060	DHFR	+/.	-/.	4:188533875	5:80650270	intron	intron	translocation	0	0	0	0	68	low	.	.	.	.	.	ENSG00000249378	ENSG00000228716	.	.	downstream	downstream	mismatches(1)	.	.	.
DLG2	MT-RNR2	-/.	+/.	11:85484196	MT:2448	intron	exon	translocation	0	0	0	279	.	low	.	.	.	.	.	ENSG00000150672	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749067	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP1LC3BP1(11866),SLC24A2(31062)	SLC2A6(8613),MYMK(26846)	./.	./.	9:19476390	9:133487740	intergenic	intergenic	inversion	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NXF2(27556),AC235565.2(6117)	NXF2(27654),AC235565.2(6019)	./.	./.	X:102354278	X:102354376	intergenic	intergenic	duplication/ITD	0	0	0	0	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749040	intergenic	intron	translocation	0	0	0	0	188	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
AL449106.1	MAP3K15	-/-	-/-	1:178725055	X:19478188	exon	intron	translocation	0	0	0	0	9	low	.	.	|ASK_kinase_PH_domain(100%),MAP3K_TRAFs-binding_domain(89%),Protein_kinase_domain(100%)	.	.	ENSG00000273062	ENSG00000180815	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL356131.1(332832),MTRNR2L9(185)	DLG2	./.	-/.	6:61574143	11:85484196	intergenic	intron	translocation	0	0	0	65	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L8	DLG2	-/.	-/.	11:10508411	11:85484196	5'UTR	intron	deletion	0	0	0	70	279	low	.	.	.	.	.	ENSG00000255823	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091987.1	HYDIN	-/.	-/.	5:105215899	16:71158143	intron	intron	translocation/3'-3'	0	0	0	0	54	low	.	.	.	.	.	ENSG00000253584	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	PHKG2	./.	+/.	10:44394838	16:30749055	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
RAMP3(65699),AC073968.2(16680)	FP236383.3	./.	+/.	7:45252001	21:8441662	intergenic	intron	translocation	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL356131.1(332832),MTRNR2L9(185)	FP236383.3	./.	+/.	6:61574143	21:8441662	intergenic	intron	translocation	0	0	0	65	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC003084.1(9529),LSM8(170570)	BTBD3(59318),AL109838.1(257381)	./.	./.	7:118013574	20:11985927	intergenic	intergenic	translocation	0	0	0	0	17	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TATDN2	DACT2(25892),AL138918.1(29028)	+/.	./.	3:10249513	6:168345669	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96617458	21:8441662	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214782	21:8214799	intron	intron	duplication/ITD	0	0	0	5263	293	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(32),homopolymer(2),inconsistently_clipped(2)	.	.	.
MTRNR2L8	FP236383.3	-/.	+/.	11:10508411	21:8441662	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000255823	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2106),FP236383.3(121604)	FP236383.3	./.	+/.	21:8259039	21:8397827	intergenic	intron	deletion/read-through	0	0	0	5782	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SH3BGR	GET1-SH3BGR	+/.	+/.	21:39479224	21:39479240	intron	intron	duplication	0	0	0	1	0	low	.	.	.	.	.	ENSG00000185437	ENSG00000285815	.	.	upstream	downstream	low_entropy(1)	.	.	.
CCDC200	FP671120.4	-/.	+/.	17:43295980	21:8217040	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000236383	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	5_8S_rRNA(1694),FP236383.3(122016)	-/.	./.	3:96617458	21:8258627	5'UTR	intergenic	translocation	0	0	0	70	44	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LONRF2P2	SETD3	+/.	-/.	13:18609250	14:99420986	exon	intron	translocation/3'-3'	1	0	0	4	0	low	.	.	.	.	.	ENSG00000233905	ENSG00000183576	.	.	upstream	downstream	min_support	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021210	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
MTRNR2L8	5_8S_rRNA(1694),FP236383.3(122016)	-/.	./.	11:10508411	21:8258627	5'UTR	intergenic	translocation	0	0	0	70	44	low	.	.	.	.	.	ENSG00000255823	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	11:121765658	11:121765669	intron	intron	duplication/ITD	0	0	0	17	15	low	.	.	.	.	.	ENSG00000286044	ENSG00000286044	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
RAMP3(65699),AC073968.2(16680)	FP671120.4	./.	+/.	7:45252001	21:8214404	intergenic	intron	translocation	0	0	0	71	8	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK11B	AP000317.2	-/.	+/.	1:1642227	21:34109348	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000248333	ENSG00000272657	.	.	upstream	upstream	mismatches(1)	.	.	.
C1S	GDF15	+/.	+/.	12:7036833	19:18380295	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182326	ENSG00000130513	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L12	TMEM120B	-/.	+/.	3:96617459	12:121782557	5'UTR	exon	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000188735	.	.	downstream	upstream	mismatches(1)	.	.	.
CSMD1	TDRD12	-/.	+/.	8:4524488	19:32824139	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183117	ENSG00000173809	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	3:96617458	21:8214404	5'UTR	intron	translocation/3'-3'	0	0	0	70	8	low	.	.	.	.	.	ENSG00000269028	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RAMP3(65699),AC073968.2(16680)	FP236383.3	./.	+/.	7:45252001	21:8397442	intergenic	intron	translocation	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	FP236383.3	-/.	+/.	3:96617458	21:8397442	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000269028	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC026358.1	GHRHR	+/+	+/+	12:124207507	7:30980283	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000256596	ENSG00000106128	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	TMEM120B	-/.	+/.	5:80650271	12:121782557	intron	exon	translocation/3'-3'	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000188735	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	PALM	+/.	+/.	11:47233104	19:709434	intron	intron	translocation/5'-5'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000099864	.	.	downstream	downstream	mismatches(1)	.	.	.
H3C10	RAMP3(65699),AC073968.2(16680)	+/.	./.	6:27810929	7:45252001	3'UTR	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000278828	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02864	FP236383.3	-/.	+/.	18:73168244	21:8397435	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000263711	ENSG00000280441	.	.	upstream	upstream	duplicates(10),mismatches(5)	.	.	.
H3C10	MT-RNR2	+/.	+/.	6:27810929	MT:2448	3'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000278828	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LNX1	DAOA-AS1	-/.	-/.	4:53490967	13:105504678	intron	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000072201	ENSG00000232307	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397819	21:8401911	intron	intron	inversion/3'-3'	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ASCL1(4830),AC026108.2(48019)	AP001599.1	./.	+/.	12:102965343	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
FNDC3B	FNDC3B	+/.	+/.	3:172358955	3:172359001	intron	intron	duplication/ITD	0	0	0	141	128	low	.	.	.	.	.	ENSG00000075420	ENSG00000075420	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
H3C10	AL356131.1(332832),MTRNR2L9(185)	+/.	./.	6:27810929	6:61574143	3'UTR	intergenic	inversion	0	0	0	0	65	low	.	.	.	.	.	ENSG00000278828	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	CFAP20DC	./.	-/.	2:218108703	3:58817013	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000163689	.	.	downstream	upstream	homopolymer(1)	.	.	.
AK6P1(88362),ZNF970P(3237267)	AAR2(382),DLGAP4(35036)	./.	./.	12:34338320	20:36271300	intergenic	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006504.5	CHODL	+/.	+/.	19:27961840	21:18051853	intron	intron	translocation/3'-3'	0	0	0	4	1	low	.	.	.	.	.	ENSG00000267575	ENSG00000154645	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006504.5	AF130417.1	+/.	-/.	19:27961840	21:18051853	intron	intron	translocation	0	0	0	4	1	low	.	.	.	.	.	ENSG00000267575	ENSG00000227330	.	.	upstream	upstream	mismatches(1)	.	.	.
MIGA1(775),NEXN-AS1(1034)	PCNT	./.	+/.	1:77880314	21:46422072	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000160299	.	.	downstream	upstream	mismatches(1)	.	.	.
AC005357.2	CHODL	+/.	+/.	19:27961840	21:18051853	intron	intron	translocation/3'-3'	0	0	0	4	1	low	.	.	.	.	.	ENSG00000267623	ENSG00000154645	.	.	upstream	upstream	mismatches(1)	.	.	.
AC005357.2	AF130417.1	+/.	-/.	19:27961840	21:18051853	intron	intron	translocation	0	0	0	4	1	low	.	.	.	.	.	ENSG00000267623	ENSG00000227330	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	SLC41A2	-/.	-/.	11:84052131	12:104952396	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000136052	.	.	upstream	upstream	duplicates(1),mismatches(3)	.	.	.
MSANTD3-TMEFF1	FP671120.4	+/.	+/.	9:100456466	21:8214795	intron	intron	translocation	0	0	0	2	5263	low	.	.	.	.	.	ENSG00000251349	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02225(171106),LINC02101(37363)	TMEM68	./.	-/.	5:58070268	8:55769425	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000167904	.	.	downstream	downstream	mismatches(1)	.	.	.
PAXBP1(51),C21orf62-AS1(257)	PAXBP1(68),C21orf62-AS1(240)	./.	./.	21:32771843	21:32771860	intergenic	intergenic	duplication/ITD	0	0	0	445	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC126773.6(1489),AC126773.1(34310)	SH3KBP1	./.	-/.	16:68595913	X:19564553	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000147010	.	.	upstream	upstream	mismatches(1)	.	.	.
UCK2(23246),AL606495.1(6371)	U3(104497),GPC1(41723)	./.	./.	1:165934864	2:240393940	intergenic	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CASC15	FP236383.3	+/.	+/.	6:22499158	21:8441654	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000272168	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	RAC1P4(106215),AL035443.1(8140)	+/.	./.	21:8442064	X:137548051	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
FP236383.5	DTNA	-/-	+/-	21:8438209	18:34571662	exon	intron	translocation/5'-5'	0	0	0	3	14	low	.	.	.	.	.	ENSG00000281181	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
UCK2(23246),AL606495.1(6371)	LSM14B	./.	+/.	1:165934864	20:62131771	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL603840.1(24739),AL353681.1(50469)	U3(104497),GPC1(41723)	./.	./.	1:56095252	2:240393940	intergenic	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMTC1(185375),AC023511.3(116208)	LINC01549	./.	+/.	12:29970134	21:17448899	intergenic	exon	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000232560	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	Z99497.2(139327),AL589669.1(77252)	+/.	./.	21:8214399	X:147103812	intron	intergenic	translocation	0	0	0	540	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	LINC01571(114628),C16orf97(102651)	./.	./.	2:240393940	16:51902836	intergenic	intergenic	translocation	0	0	0	357	5	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FECHP1(162381),KRT8P18(179470)	FECHP1(162417),KRT8P18(179434)	./.	./.	3:35036235	3:35036271	intergenic	intergenic	duplication/ITD	0	0	0	72	72	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ALOX12-AS1	MSH3	-/-	+/-	17:6926187	5:80854005	exon	intron	translocation/5'-5'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000215067	ENSG00000113318	.	.	upstream	downstream	mismatches(1)	.	.	.
ITGB8(15002),EEF1A1P27(151316)	PITPNC1	./.	+/.	7:20430756	17:67378807	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000154217	.	.	downstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	GDF10	./.	+/.	2:240393940	10:47306418	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000266524	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC25A24P1	AL390038.1(4654),NBPF6(12444)	+/+	./+	1:108273076	1:108437838	exon	intergenic	deletion/read-through	0	0	0	0	2	low	.	.	.	.	.	ENSG00000241361	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IP6K1(3646),CDHR4(544)	AP001823.1(3431),ELMOD1(757)	./.	./.	3:49790188	11:107590334	intergenic	intergenic	translocation	0	0	0	14	1909	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AC006974.1	CKAP5	-/.	-/.	7:148483557	11:46754528	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283504	ENSG00000175216	.	.	upstream	upstream	mismatches(1)	.	.	.
OPCML	LSM14B	-/.	+/.	11:132846099	20:62131771	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000183715	ENSG00000149657	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC068787.1(14544),AC068787.3(6502)	AL355836.3	./.	-/.	12:127477741	14:101193602	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000288245	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	U3(104498),GPC1(41722)	./.	./.	1:148724716	2:240393941	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),mismatches(3)	.	.	.
TBL1XR1	METTL1P1(345733),RPP40P1(50413)	-/.	./.	3:177052293	X:25540940	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000177565	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785680	X:133661643	intron	intron	translocation/3'-3'	0	0	0	466	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
RNLS	FP236383.3	-/.	+/.	10:88455394	21:8398431	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184719	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
LINC01097(1003),NKX3-2(5492)	AC099342.1	./.	+/.	4:13535338	7:20308242	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000226097	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC008083.2(60394),PPIAP45(2199)	AC008083.2(60407),PPIAP45(2186)	./.	./.	12:47339415	12:47339428	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
YWHAZ	FP671120.4	-/.	+/.	8:100917283	21:8211722	3'UTR	intron	translocation	0	0	0	5	136	low	.	.	.	.	.	ENSG00000164924	ENSG00000278996	.	.	downstream	downstream	mismatches	.	.	.
DHFR	MT-RNR2	-/.	+/.	5:80650761	MT:2443	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000228716	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(2)	.	.	.
DBNDD1	GDF1	-/.	-/.	16:90019748	19:18891453	CDS	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000003249	ENSG00000130283	.	.	downstream	downstream	mismatches(1)	.	.	.
SH3RF1	MT-RNR2	-/.	+/.	4:169254087	MT:2439	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000154447	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RPL23AP28(31123),PAX3(123770)	MT-RNR2	./.	+/.	2:222076117	MT:2440	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FP671120.4	5_8S_rRNA(2081),FP236383.3(121629)	+/.	./.	21:8218872	21:8259014	intron	intergenic	inversion	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF1B-AS1	MT-RNR2	-/.	+/.	3:40252687	MT:2442	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280739	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
MYEOV	TMTC4	+/.	-/.	11:69310389	13:100657859	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000172927	ENSG00000125247	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS3AP40(7057),AC004923.1(1075)	RPS3AP40(7067),AC004923.1(1065)	./.	./.	11:67933488	11:67933498	intergenic	intergenic	duplication/ITD	0	0	0	24	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC062016.2(203807),MTND1P28(1350)	MT-RNR2	./.	+/.	2:117022568	MT:2442	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AIG1	MT-RNR2	+/.	+/.	6:143272830	MT:2440	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000146416	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
KCNH2	CACUL1(6732),AL157388.1(22582)	-/-	./+	7:150947792	10:118761981	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Cyclic_nucleotide-binding_domain(100%),Ion_transport_protein(100%),PAS_domain(100%)|	.	.	ENSG00000055118	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	MT-RNR2	-/.	+/.	3:96617949	MT:2443	5'UTR	exon	translocation/3'-3'	0	0	0	3	.	low	.	.	.	.	.	ENSG00000269028	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(2)	.	.	.
5_8S_rRNA(3348),FP236383.3(120362)	FP236383.3	./.	+/.	21:8260281	21:8438948	intergenic	intron	deletion/read-through	0	0	0	4	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
STARD3	SEMA3A	+/+	-/-	17:39658997	7:84007637	exon	intron	translocation	0	0	0	0	0	low	.	.	Cholesterol-capturing_domain(100%)|Sema_domain(37%)	.	.	ENSG00000131748	ENSG00000075213	.	.	downstream	downstream	mismatches(1)	.	.	.
MT-RNR2	MT-RNR2	+/.	+/.	MT:1957	MT:2443	exon	exon	inversion/3'-3'	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(2)	.	.	.
MTRNR2L8	MT-RNR2	-/.	+/.	11:10508902	MT:2443	5'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000255823	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(2)	.	.	.
PPM1L	MT-RNR2	+/.	+/.	3:160947686	MT:2443	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163590	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(2)	.	.	.
MTRNR2L1	MT-RNR2	+/.	+/.	17:22523385	MT:2443	5'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000256618	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(2)	.	.	.
LINC01937	TGFBI	+/.	+/.	2:238675037	5:136044142	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000234279	ENSG00000120708	.	.	upstream	downstream	mismatches(1)	.	.	.
PAQR3	MT-RNR2	-/.	+/.	4:78905792	MT:2439	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163291	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00665	LINC00665	-/.	-/.	19:36277205	19:36277216	intron	intron	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	ENSG00000232677	ENSG00000232677	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
LINC01743	C9orf153	-/.	-/.	1:246516287	9:86251977	exon	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000242042	ENSG00000187753	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC124290.1(81829),MTCYBP19(4740)	FP671120.3(3893),FP671120.7(550)	./.	./.	8:36273023	21:8254042	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL445466.1(192393),LINC02817(3466)	DMD	./.	-/.	1:221326614	X:31572278	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000198947	.	.	downstream	downstream	mismatches(1)	.	.	.
AC013762.1	FP671120.4	-/.	+/.	11:13058343	21:8215396	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000255558	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01743	CLPB	-/.	-/.	1:246516287	11:72358541	exon	intron	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000242042	ENSG00000162129	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749066	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPS27AP20(98223),BX890604.1(1705)	CHRDL1(2862),PAK3(145604)	./.	./.	X:3815823	X:110798681	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CTBP2	CTBP2	-/.	-/.	10:125098649	10:125098668	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000175029	ENSG00000175029	.	.	upstream	downstream	low_entropy(1)	.	.	.
MARCHF4	MIR4300HG	-/.	-/.	2:216263455	11:82143175	intron	intron	translocation	0	0	0	9	1095	low	.	.	.	.	.	ENSG00000144583	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
AC107032.1(53501),RPL7P43(7149)	RPS27AP20(98222),BX890604.1(1706)	./.	./.	12:76714385	X:3815822	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTHFD1	CR392039.1(942),CR392039.3(8124)	+/.	./.	14:64410913	21:8988372	intron	intergenic	translocation	0	0	0	11	48	low	.	.	.	.	.	ENSG00000100714	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TTLL3	TMEM132D	+/+	-/-	3:9809808	12:129072701	5'UTR	3'UTR	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000151952	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC023593.1	TMEM271	-/.	-/.	3:127620806	4:574605	exon	3'UTR	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000285600	ENSG00000273238	.	.	downstream	downstream	mismatches(1)	.	.	.
GGPS1	AC104041.1	+/.	-/.	1:235327619	15:81953266	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000259692	.	.	upstream	upstream	mismatches(1)	.	.	.
CLPB	RPS27AP20(98222),BX890604.1(1706)	-/.	./.	11:72358541	X:3815822	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000162129	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP002892.1	RPS27AP20(98222),BX890604.1(1706)	+/.	./.	11:72358541	X:3815822	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000255672	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC2A6(8613),MYMK(26846)	TCHP	./.	+/.	9:133487740	12:109902078	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000139437	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009303.2	METAP1D(856),DLX1(1454)	+/+	./-	2:118055017	2:172083286	exon	intergenic	inversion	0	0	0	24	0	low	.	.	.	.	.	ENSG00000235066	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AP001823.1(3437),ELMOD1(751)	AP001823.1(3535),ELMOD1(653)	./.	./.	11:107590340	11:107590438	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
VAMP3(2231),PER3(657)	CLPB	./.	-/.	1:7783663	11:72358539	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000162129	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PTHLH	FP236383.3	-/.	+/.	12:27970462	21:8438949	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000087494	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GABBR2	AC107032.1(53501),RPL7P43(7149)	-/.	./.	9:98697847	12:76714385	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000136928	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C9orf153	GABBR2	-/.	-/.	9:86251977	9:98697847	intron	intron	deletion	0	0	0	6	0	low	.	.	.	.	.	ENSG00000187753	ENSG00000136928	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MKNK1	MT-RNR2	-/.	+/.	1:46591072	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000079277	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LARP4	LARP4	+/.	+/.	12:50446344	12:50446353	intron	intron	duplication/ITD	0	0	0	53	39	low	.	.	.	.	.	ENSG00000161813	ENSG00000161813	.	.	upstream	downstream	low_entropy(1)	.	.	.
NPM1P10(286385),AL357522.1(173947)	AC091515.1(60833),LINC02426(23840)	./.	./.	6:104313148	12:81929879	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GABBR2	CLPB	-/.	-/.	9:98697847	11:72358541	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000136928	ENSG00000162129	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IQSEC1	ABBA01000935.2	-/.	-/.	3:12976120	3:91387175	intron	intron	deletion	0	0	0	0	4	low	.	.	.	.	.	ENSG00000144711	ENSG00000283544	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GABBR2	AP002892.1	-/.	+/.	9:98697847	11:72358541	intron	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000136928	ENSG00000255672	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	Y_RNA(5788),MAP7D2(15766)	+/.	./.	21:8216871	X:19990947	intron	intergenic	translocation	0	0	0	1	18	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01743	STXBP5-AS1	-/.	-/.	1:246516285	6:146976739	exon	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000242042	ENSG00000233452	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HELQ(45),MRPS18C(32)	DYNC2H1	./.	+/.	4:83455900	11:103278165	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000187240	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01743	MYO5A	-/.	-/.	1:246516287	15:52440807	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242042	ENSG00000197535	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL390778.2(33289),C9orf62(57252)	FP236383.3	./.	+/.	9:135285997	21:8397822	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL365259.1	FIGNL2	-/.	-/.	6:125747933	12:51846742	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000237742	ENSG00000261308	.	.	downstream	upstream	mismatches(1)	.	.	.
HMGB3P23(617061),RNA5SP281(31337)	ACO1	./.	+/.	9:32262221	9:32262236	intergenic	intergenic	duplication	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000122729	.	.	upstream	downstream	duplicates(33),low_entropy(1)	.	.	.
LINC02530(23827),PHACTR1(107323)	FP236383.3	./.	+/.	6:12609231	21:8397836	intergenic	intron	translocation	0	0	0	2	5614	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	downstream	homopolymer(1)	.	.	.
NDUFAF4(8228),RN7SL509P(8580)	ENOX2	./.	-/.	6:96906119	X:130678500	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000165675	.	.	upstream	downstream	mismatches(1)	.	.	.
SDK1	AL163974.1(22793),LINC00523(45131)	+/.	./.	7:3911337	14:100612119	intron	intergenic	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000146555	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC188616.1	AP001599.1	-/-	+/-	7:331248	21:26914102	exon	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000287342	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC188616.1	AC012060.1(92676),LINC02248(36443)	-/-	./-	7:331248	15:26358594	exon	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000287342	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ADAMTS12	CLVS2(48776),TRDN(94638)	-/.	./.	5:33605725	6:123121701	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000151388	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TEPP(4125),ZNF319(2427)	AP001599.1	./.	+/.	16:57992241	21:26914102	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MAP3K7(430063),AL080284.1(373178)	MAP3K7(430121),AL080284.1(373120)	./.	./.	6:91017135	6:91017193	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(3)	.	.	.
ERI3	TEPP(4125),ZNF319(2427)	-/.	./.	1:44320094	16:57992241	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	TEPP(4125),ZNF319(2427)	./.	./.	15:26358594	16:57992241	intergenic	intergenic	translocation	0	0	0	71	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC004852.2(134346),GAPDHP68(290775)	HS6ST2	./.	-/.	7:9324203	X:132708552	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000171004	.	.	downstream	downstream	mismatches(1)	.	.	.
CDH13	CDH13	+/.	+/.	16:83134541	16:83134593	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000140945	ENSG00000140945	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
AC012060.1(92676),LINC02248(36443)	KLF1	./.	-/.	15:26358594	19:12886456	intergenic	intron	translocation	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000105610	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL627316.1	DNAH14	-/.	+/.	1:90392802	1:225078904	intron	intron	duplication/5'-5'	0	0	0	312	144	low	.	.	.	.	.	ENSG00000287372	ENSG00000185842	.	.	upstream	downstream	mismatches	.	.	.
FHL2(19698),AC018802.1(142492)	AP001599.1	./.	+/.	2:105458211	21:26914102	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
ERI3	FHL2(19698),AC018802.1(142492)	-/.	./.	1:44320094	2:105458211	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
NRIP3	RNU4-83P(49966),RPS26P6(13945)	-/-	./+	11:9003964	8:100881826	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HELQ(45),MRPS18C(32)	AC022826.2	./.	-/.	4:83455900	8:73820103	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258677	.	.	downstream	upstream	mismatches(1)	.	.	.
FHL2(19698),AC018802.1(142492)	AC012060.1(92676),LINC02248(36443)	./.	./.	2:105458211	15:26358594	intergenic	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LARP1	AC012060.1(92676),LINC02248(36443)	+/.	./.	5:154755363	15:26358594	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000155506	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
TLX1(30288),LINC01514(8229)	AC012060.1(92676),LINC02248(36443)	./.	./.	10:101168077	15:26358594	intergenic	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
CDH18	AC012060.1(92676),LINC02248(36443)	-/.	./.	5:20271009	15:26358594	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000145526	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC004972.1(70090),AC005008.2(130694)	AL133493.1(12301),PCBP3(5718)	./.	./.	7:81044814	21:45637976	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL033529.1	PSKH2	+/.	-/.	1:32507193	8:86058813	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	ENSG00000147613	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRC14B	ABLIM2(3392),GMPSP1(12197)	+/+	./+	5:191858	4:8162224	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000185028	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MROH7-TTC4	TTC4	+/.	+/.	1:54736179	1:54736190	intron	intron	duplication	0	0	0	14	14	low	.	.	.	.	.	ENSG00000271723	ENSG00000243725	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
MADD	AC087235.1	+/.	-/.	11:47324744	12:23210808	3'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000110514	ENSG00000115934	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP26	ARHGAP26	+/.	+/.	5:142949166	5:142949181	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000145819	ENSG00000145819	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
ATAD2	AC079052.1	-/.	+/.	8:123395907	18:41407874	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000156802	ENSG00000286328	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	AP002371.1(8127),AP003072.4(53697)	./.	./.	6:168345669	11:93080158	intergenic	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),mismatches(6)	.	.	.
5_8S_rRNA(2094),FP236383.3(121616)	AC091806.1	./.	+/.	21:8259027	X:40289161	intergenic	intron	translocation	0	0	0	6	10	low	.	.	.	.	.	.	ENSG00000236393	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PAXBP1(51),C21orf62-AS1(257)	PAXBP1(78),C21orf62-AS1(230)	./.	./.	21:32771843	21:32771870	intergenic	intergenic	duplication/ITD	0	0	0	445	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC084759.3	DACT2(25892),AL138918.1(29028)	+/+	./+	15:53910829	6:168345669	exon	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000280362	.	.	.	downstream	upstream	duplicates(5),mismatches(6)	.	.	.
NOTCH2NLB(44938),RNU6-1171P(14662)	LSM14B	./.	+/.	1:148724717	20:62131774	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000149657	.	.	downstream	upstream	mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	AL513321.1(21925),AL592466.1(602)	./.	./.	6:168345669	10:65270717	intergenic	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),mismatches(6)	.	.	.
U3(104497),GPC1(41723)	RPL12P4(19716),LINC01440(314042)	./.	./.	2:240393940	20:55094856	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),mismatches(16)	.	.	.
SUSD5(52300),FBXL2(5915)	DACT2(25892),AL138918.1(29028)	./.	./.	3:33271110	6:168345669	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),mismatches(6)	.	.	.
AC020741.1	DACT2(25892),AL138918.1(29028)	-/-	./+	4:61428174	6:168345669	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000205682	.	.	.	upstream	upstream	duplicates(5),mismatches(6)	.	.	.
AP001823.1(3435),ELMOD1(753)	AP001823.1(3534),ELMOD1(654)	./.	./.	11:107590338	11:107590437	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LGI2(57572),SEPSECS(31496)	KCNJ1	./.	-/.	4:25088518	11:128848973	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000151704	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
DUX4L23	PGLYRP1	+/+	-/+	10:133674834	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000276964	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
NAALADL2	LINC01483	+/.	+/.	3:175504623	17:69607688	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000177694	ENSG00000227517	.	.	downstream	upstream	low_entropy(1)	.	.	.
AC012531.3	AC012531.3	+/.	+/.	12:54008827	12:54008842	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000273049	ENSG00000273049	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC112481.2	SLC12A1	-/.	+/.	12:90669265	15:48231143	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288102	ENSG00000074803	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC012531.3	HOXC6	+/.	+/.	12:54008827	12:54008842	intron	intron	duplication	0	0	0	12	12	low	.	.	.	.	.	ENSG00000273049	ENSG00000197757	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
DYNLL1	5_8S_rRNA(2092),FP236383.3(121618)	+/.	./.	12:120496222	21:8259025	5'UTR	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000088986	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
HOXC6	AC012531.3	+/.	+/.	12:54008827	12:54008842	intron	intron	duplication	0	0	0	12	12	low	.	.	.	.	.	ENSG00000197757	ENSG00000273049	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
HOXC6	HOXC6	+/.	+/.	12:54008827	12:54008842	intron	intron	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	ENSG00000197757	ENSG00000197757	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
PNPLA4	PNPLA4	-/-	-/-	X:7899619	X:7899680	3'UTR	3'UTR	duplication/ITD	0	0	0	8	8	low	.	.	Patatin-like_phospholipase(100%)|	.	.	ENSG00000006757	ENSG00000006757	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FXNP1(22668),NRXN3(87427)	FXNP1(22763),NRXN3(87332)	./.	./.	14:78082946	14:78083041	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(10),low_entropy(2)	.	.	.
FXNP1(22674),NRXN3(87421)	FXNP1(22773),NRXN3(87322)	./.	./.	14:78082952	14:78083051	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
PRKCZ	5_8S_rRNA(2092),FP236383.3(121618)	+/.	./.	1:2178891	21:8259025	intron	intergenic	translocation	0	0	0	2	6	low	.	.	.	.	.	ENSG00000067606	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
C16orf91(5657),PERCC1(4665)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	16:1426413	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
HMMR	CNTN1(58991),PDZRN4(56914)	+/.	./.	5:163483510	12:41131406	intron	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000072571	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ACSS3	5_8S_rRNA(2091),FP236383.3(121619)	+/+	./+	12:80937137	21:8259024	exon	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000111058	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
ACSS3	FP236383.3	+/+	+/+	12:80937137	21:8397829	exon	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000111058	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
NOTCH2NLB(44938),RNU6-1171P(14662)	COL6A1	./.	+/.	1:148724717	21:45986696	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000142156	.	.	downstream	upstream	mismatches(1)	.	.	.
SDK1	SDK1	+/.	+/.	7:3723944	7:3723957	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000146555	ENSG00000146555	.	.	upstream	downstream	low_entropy(1)	.	.	.
ANK2	ZNF431	+/.	+/.	4:113275782	19:21175437	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145362	ENSG00000196705	.	.	upstream	downstream	mismatches(1)	.	.	.
C16orf91(5657),PERCC1(4665)	FP671120.4	./.	+/.	16:1426413	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
RNF43	GAS2L1	-/.	+/.	17:58385558	22:29312407	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	ENSG00000185340	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092138.2(85727),AC022164.1(128438)	Z98752.3	./.	+/.	16:65732674	20:43556450	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000277611	.	.	upstream	upstream	mismatches(1)	.	.	.
KDM6B	KDM6B	+/+	+/+	17:7846899	17:7846853	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	|JmjC_domain__hydroxylase(100%)	.	.	ENSG00000132510	ENSG00000132510	.	.	downstream	upstream	low_entropy(1)	.	.	.
AC093912.1(103799),AC073062.1(102191)	PDE4D	./.	-/.	2:13435482	5:60191253	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000113448	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL121888.1	RUNX1	-/.	-/.	20:48359597	21:35550073	intron	intron	translocation/3'-3'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000286063	ENSG00000159216	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
ARHGAP30	ARHGAP30	-/.	-/.	1:161051968	1:161059767	intron	intron	duplication	0	0	0	66	31	low	.	.	.	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC034228.3	MEIKIN	-/.	-/.	5:131885339	5:131885358	intron	intron	duplication	0	0	0	60	10	low	.	.	.	.	.	ENSG00000281938	ENSG00000239642	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC004840.1	5_8S_rRNA(2077),FP236383.3(121633)	+/.	./.	7:2383814	21:8259010	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000230914	.	.	.	downstream	upstream	mismatches	.	.	.
AL110505.1(238204),ATP5MC2P2(58257)	AC092138.2(85726),AC022164.1(128439)	./.	./.	14:49315709	16:65732673	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KIAA2012	SPANXA2-OT1	+/.	+/.	2:202083777	X:141542404	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000277215	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001885.2	FP671120.3(1958),FP671120.7(2485)	-/.	./.	11:67317231	21:8252107	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287851	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SEMA6D	AC092138.2(85726),AC022164.1(128439)	+/.	./.	15:47276193	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000137872	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BCAP31P2	CXorf38(495),MED14(249)	+/.	./.	16:32870757	X:40648056	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000260047	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TUBBP11(353354),RAP1BP2(78773)	FP236383.3	./.	+/.	3:103984266	21:8397434	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
BTBD2	SLC35F1	-/-	+/-	19:2034750	6:118138884	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000133243	ENSG00000196376	.	.	upstream	downstream	mismatches(1)	.	.	.
MECOM	AC092138.2(85726),AC022164.1(128439)	-/.	./.	3:169304222	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000085276	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ZFHX3	TNFRSF8(4018),MIR7846(18718)	-/-	./+	16:73058827	1:12148225	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000140836	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
DBET	RNU4-43P(92312),AC025475.1(277182)	+/+	./+	4:190065653	5:26105337	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000281591	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093326.1	AC022826.2	+/.	-/.	2:562608	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233633	ENSG00000258677	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1374552	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
ALDH1L2	ALDH1L2	-/.	-/.	12:105046145	12:105046194	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000136010	ENSG00000136010	.	.	upstream	downstream	duplicates(291),low_entropy(25)	.	.	.
OXNAD1	MECOM	+/.	-/.	3:16298767	3:169304222	intron	intron	deletion/5'-5'	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000085276	.	.	downstream	upstream	mismatches(2)	.	.	.
RUFY4(18122),CXCR2(16586)	AP001021.1	./.	+/.	2:218108703	18:5979009	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000264449	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC022558.2	AC092138.2(85726),AC022164.1(128439)	+/.	./.	15:82971584	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259805	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022973.5	FP236383.3	+/.	+/.	8:129834827	21:8393308	intron	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000254317	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
Z96074.1(205442),RN7SKP31(210129)	MT-RNR1	./.	+/.	X:138187222	MT:1502	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
OXNAD1	AC022558.2	+/.	+/.	3:16298767	15:82971584	intron	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000259805	.	.	downstream	downstream	mismatches(2)	.	.	.
SYT16	AC092138.2(85726),AC022164.1(128439)	+/.	./.	14:61972576	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139973	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BX470209.2	FP236383.3	-/.	+/.	9:89797938	21:8438688	exon	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000236507	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
OXNAD1	SYT16	+/.	+/.	3:16298767	14:61972576	intron	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000139973	.	.	downstream	downstream	mismatches(2)	.	.	.
MBD5(25579),RPS29P8(52608)	LINC01006	./.	-/.	2:148542550	7:156440905	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182648	.	.	upstream	upstream	mismatches(1)	.	.	.
INO80C(70122),GALNT1(13016)	INO80C(70135),GALNT1(13003)	./.	./.	18:35568101	18:35568114	intergenic	intergenic	duplication/ITD	0	0	0	11	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
AL136456.1	FP671120.4	+/.	+/.	1:193927797	21:8211454	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000227240	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02755	AC092138.2(85726),AC022164.1(128439)	-/.	./.	11:29846449	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000254530	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC107973.1	AC092138.2(85726),AC022164.1(128439)	+/.	./.	11:29846449	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000254734	.	.	.	downstream	upstream	mismatches(1)	.	.	.
OXNAD1	LINC02755	+/.	-/.	3:16298767	11:29846449	intron	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000254530	.	.	downstream	downstream	mismatches(2)	.	.	.
AL512452.1	FP236383.3	-/.	+/.	13:67769886	21:8442064	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000287876	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
HSD52	GAS7	-/.	-/.	1:59216833	17:10019884	intron	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224609	ENSG00000007237	.	.	upstream	downstream	mismatches(1)	.	.	.
OXNAD1	AC107973.1	+/.	+/.	3:16298767	11:29846449	intron	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000254734	.	.	downstream	downstream	mismatches(2)	.	.	.
OXNAD1	CNOT1	+/.	-/.	3:16298767	16:58553988	intron	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000125107	.	.	downstream	upstream	mismatches(2)	.	.	.
NUDCD1	AC092138.2(85726),AC022164.1(128439)	-/.	./.	8:109254742	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120526	.	.	.	upstream	upstream	mismatches(1)	.	.	.
OXNAD1	NUDCD1	+/.	-/.	3:16298767	8:109254742	intron	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	ENSG00000120526	.	.	downstream	upstream	mismatches(2)	.	.	.
AL136537.1(62461),MIR4801(45600)	MN1(31686),PITPNB(18227)	./.	./.	4:37196310	22:27833442	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009299.2	AC006499.8(7830),RAF1P1(8861)	-/.	./.	2:161267671	4:10246065	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235724	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CDCA2(10816),AC009623.1(74470)	RPL21P12(17605),GCSHP2(17191)	./.	./.	8:25518727	14:103167013	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM166C	CASC19	+/.	-/.	2:26563173	8:127115208	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000173557	ENSG00000254166	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009126.1	FP671120.4	-/.	+/.	5:96831552	21:8215397	intron	intron	translocation/3'-3'	0	0	0	8	23	low	.	.	.	.	.	ENSG00000247121	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
AGRN	SLIT1	+/.	-/.	1:1041820	10:97043517	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000187122	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02005	CASC19	+/.	-/.	3:73813296	8:127115208	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000242741	ENSG00000254166	.	.	upstream	upstream	mismatches(1)	.	.	.
AC068473.3	FP236383.3	+/.	+/.	18:79577928	21:8442769	exon	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000267287	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF3G	PCAT1	-/-	+/+	19:10115740	8:127115208	CDS/splice-site	intron	translocation	0	0	0	0	7	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_G_(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(34%)|	.	.	ENSG00000130811	ENSG00000253438	.	.	upstream	upstream	mismatches(1)	.	.	.
AL162417.1	AC138466.3(11858),LINC02361(4834)	-/.	./.	9:133148049	12:132181901	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285245	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DYNC2H1	5_8S_rRNA(1691),FP236383.3(122019)	+/.	./.	11:103278165	21:8258624	intron	intergenic	translocation	0	0	0	12	44	low	.	.	.	.	.	ENSG00000187240	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
EIF3G	CASC19	-/-	-/+	19:10115740	8:127115208	CDS/splice-site	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_G_(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(34%)|	.	.	ENSG00000130811	ENSG00000254166	.	.	upstream	upstream	mismatches(1)	.	.	.
AL136366.1	MAGEA9(1737),MAGEA7P(18740)	+/.	./.	9:14353665	X:149789474	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000225472	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PCAT1	ANKRD11	+/.	-/.	8:127115208	16:89314543	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000253438	ENSG00000167522	.	.	upstream	downstream	mismatches(1)	.	.	.
CASC19	ANKRD11	-/.	-/.	8:127115208	16:89314543	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000254166	ENSG00000167522	.	.	upstream	downstream	mismatches(1)	.	.	.
AC090204.1	RPL10L(115581),MDGA2(72267)	+/.	./.	8:33013509	14:46767362	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000247134	.	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
LRR1	FTX	+/.	-/.	14:49599727	X:74076559	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165501	ENSG00000230590	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
TMCC2(16210),NUAK2(221)	CASC19	./.	-/.	1:205301842	8:127115208	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000254166	.	.	upstream	upstream	mismatches(1)	.	.	.
TENM2	PCAT1	+/.	+/.	5:167973715	8:127115208	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000145934	ENSG00000253438	.	.	upstream	upstream	mismatches(1)	.	.	.
TENM2	CASC19	+/.	-/.	5:167973715	8:127115208	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000145934	ENSG00000254166	.	.	upstream	upstream	mismatches(1)	.	.	.
DDX11	PAQR5	+/.	+/.	12:31095899	15:69399191	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000013573	ENSG00000137819	.	.	upstream	downstream	mismatches(1)	.	.	.
C13orf42	EEF1A1P2(15647),LINC02311(49259)	-/.	./.	13:51124781	14:81678521	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000226792	.	.	.	upstream	downstream	mismatches(1)	.	.	.
VAV3	NUDT12(105221),AC008505.1(212118)	-/.	./.	1:107670554	5:103668011	intron	intergenic	translocation	0	0	0	20	11	low	.	.	.	.	.	ENSG00000134215	.	.	.	downstream	downstream	duplicates(3),mismatches(4)	.	.	.
AC087280.2	FP671120.4	-/.	+/.	11:6880533	21:8214791	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000283415	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
EPC1(15153),RNU6-1244P(607)	DDX12P	./.	-/.	10:32393951	12:9426557	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000214826	.	.	upstream	downstream	mismatches(1)	.	.	.
ABHD2	FP671120.4	+/.	+/.	15:89133592	21:8214396	intron	intron	translocation	0	0	0	3	540	low	.	.	.	.	.	ENSG00000140526	ENSG00000278996	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
ENPP6	ST8SIA6(10107),PRPF38AP2(112660)	-/.	./.	4:184122405	10:17464702	intron	intergenic	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	.	.	.	upstream	downstream	mismatches(2)	.	.	.
AP001823.1(3442),ELMOD1(746)	FXNP1(22683),NRXN3(87412)	./.	./.	11:107590345	14:78082961	intergenic	intergenic	translocation	0	0	0	1914	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
DDX12P	PAQR5	-/.	+/.	12:9426556	15:69399191	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000214826	ENSG00000137819	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785690	X:133661643	intron	intron	translocation/3'-3'	0	0	0	496	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
AL008638.2	AL008638.2	-/.	-/.	22:27053515	22:27053568	intron	intron	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000236858	ENSG00000236858	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
DMBT1L1	AC027237.3	+/.	-/.	10:122824214	15:69399191	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000176584	ENSG00000259426	.	.	upstream	downstream	mismatches(1)	.	.	.
AL606468.1(18422),LINC02608(16597)	THRAP3P2(6696),SLCO3A1(103057)	./.	./.	1:212208681	15:91750651	intergenic	intergenic	translocation	0	0	0	50	21	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AC092944.1	FBN3(10841),AC022146.1(12839)	+/.	./.	3:157252490	19:8160433	intron	intergenic	translocation	0	0	0	26	6	low	.	.	.	.	.	ENSG00000243176	.	.	.	upstream	upstream	low_entropy	.	.	.
GCNT1	FP671120.4	+/.	+/.	9:76571859	21:8217333	intron	intron	translocation/3'-3'	0	0	0	38	4	low	.	.	.	.	.	ENSG00000187210	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02005	ZNF302(39542),AC020910.5(7359)	+/.	./.	3:73813296	19:34725939	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242741	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GNB1	ZNF302(39526),AC020910.5(7375)	-/.	./.	1:1825466	19:34725923	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000078369	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC200	FP236383.3	-/.	+/.	17:43295980	21:8400075	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000236383	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2096),FP236383.3(121614)	+/.	./.	21:8214800	21:8259029	intron	intergenic	duplication	0	0	0	5263	5782	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	duplicates(4),homopolymer(4)	.	.	.
ANKRD11	ZNF302(39542),AC020910.5(7359)	-/.	./.	16:89314543	19:34725939	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167522	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ARHGAP30	AP000255.1(48413),TPT1P1(55521)	-/.	./.	1:161059767	21:31784820	intron	intergenic	translocation	0	0	0	31	90	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
AL512452.1	FP236383.3	-/.	+/.	13:67769886	21:8397834	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000287876	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
TENM2	ZNF302(39542),AC020910.5(7359)	+/.	./.	5:167973715	19:34725939	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145934	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FAM166C	LINC00866	+/.	-/.	2:26563173	10:97837187	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173557	ENSG00000227356	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC2A9	AC116366.2	-/.	+/.	4:9774826	5:132496185	intron	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	ENSG00000283782	.	.	downstream	downstream	homopolymer(1)	.	.	.
SEPTIN8	TRPC5(74),DPRXP7(237102)	-/.	./.	5:132788158	X:112082850	intron	intergenic	translocation	0	0	0	26	3	low	.	.	.	.	.	ENSG00000164402	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC02005	LINC00866	+/.	-/.	3:73813296	10:97837187	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242741	ENSG00000227356	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC104041.1	+/.	-/.	15:81683459	15:81683470	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259692	.	.	upstream	downstream	duplicates(2)	.	.	.
TATDN2	FP671120.4	+/.	+/.	3:10249514	21:8214796	CDS	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000157014	ENSG00000278996	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
TMCC2(16210),NUAK2(221)	LINC00866	./.	-/.	1:205301842	10:97837187	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000227356	.	.	upstream	upstream	mismatches(1)	.	.	.
PIN1P1	AP001599.1	+/+	+/-	1:69919786	21:26914102	exon	intron	translocation/5'-5'	0	0	0	6	167	low	.	.	.	.	.	ENSG00000229359	ENSG00000223563	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
RPSAP40(64258),UST(34175)	5_8S_rRNA(2093),FP236383.3(121617)	./.	./.	6:148712855	21:8259026	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LYPD6	EPC1(15153),RNU6-1244P(607)	+/.	./.	2:149421961	10:32393951	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000187123	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL118558.1	FP671120.3(1958),FP671120.7(2485)	-/.	./.	14:102063231	21:8252107	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258959	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	MT-RNR2	+/.	+/.	21:8214261	MT:1699	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000278996	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LYPD6	AC027237.3	+/.	-/.	2:149421960	15:69399191	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000187123	ENSG00000259426	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009299.2	EPC1(15153),RNU6-1244P(607)	-/.	./.	2:161267671	10:32393951	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000235724	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01360(228770),LINC02238(51193)	AL163541.1	./.	-/.	1:73584023	13:109602694	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285534	.	.	downstream	upstream	mismatches(1)	.	.	.
DLGAP4	DLGAP4	+/.	+/.	20:36467018	20:36467033	intron	intron	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	ENSG00000080845	ENSG00000080845	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
POLE	AP001605.1	-/-	-/+	12:132650317	21:27406343	exon	intron	translocation/5'-5'	0	0	0	16	0	low	.	.	DNA_polymerase_family_B(100%),DNA_polymerase_family_B__exonuclease_domain(100%)|	.	.	ENSG00000177084	ENSG00000231236	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45463192	intron	intron	translocation/5'-5'	0	0	0	154	37	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	duplicates(1),mismatches(3)	.	.	.
VAV3	AC004946.1(17650),KCND2(28312)	-/.	./.	1:107670554	7:120244863	intron	intergenic	translocation	0	0	0	20	9	low	.	.	.	.	.	ENSG00000134215	.	.	.	downstream	downstream	duplicates(3),mismatches(4)	.	.	.
ENPP6	AC105021.1(151795),TMEM100(6255)	-/.	./.	4:184122405	17:55713372	intron	intergenic	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC004946.1(17650),KCND2(28312)	EPB41L3	./.	-/.	7:120244863	18:5568113	intergenic	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	.	ENSG00000082397	.	.	downstream	downstream	mismatches(2)	.	.	.
AP005436.1	AL359854.1(54187),LINC01278(80142)	-/.	./.	11:88092448	X:63142851	intron	intergenic	translocation	0	0	0	718	1	low	.	.	.	.	.	ENSG00000255102	.	.	.	downstream	upstream	mismatches	.	.	.
AC004946.1(17650),KCND2(28312)	AP005059.1	./.	+/.	7:120244863	18:5568113	intergenic	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	.	ENSG00000264000	.	.	downstream	downstream	mismatches(2)	.	.	.
GAP43	FP671120.4	+/.	+/.	3:115698680	21:8217546	intron	intron	translocation/3'-3'	0	0	0	4	25	low	.	.	.	.	.	ENSG00000172020	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-DRB5	ADCY1	-/.	+/.	6:32519404	7:45682484	CDS	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000198502	ENSG00000164742	.	.	downstream	upstream	mismatches(1)	.	.	.
SOX21-AS1(58797),LINC00557(97814)	SUPT20HL2(41876),SUPT20HL1(6370)	./.	./.	13:94862227	X:24355955	intergenic	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
THADA	AC004946.1(17650),KCND2(28312)	-/.	./.	2:43464624	7:120244863	intron	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000115970	.	.	.	upstream	downstream	mismatches(2)	.	.	.
PRUNE2	MGMT	-/.	+/.	9:76808399	10:129481948	intron	intron	translocation/5'-5'	0	0	0	6	4	low	.	.	.	.	.	ENSG00000106772	ENSG00000170430	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RGS6	EPB41L3	+/.	-/.	14:72111284	18:5568113	intron	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000182732	ENSG00000082397	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKCZ	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	1:2178890	21:8259024	intron	intergenic	translocation	0	0	0	2	6	low	.	.	.	.	.	ENSG00000067606	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DRAM2	AC026336.1(1954),AC026336.2(30568)	-/.	./.	1:111140177	12:130219111	5'UTR	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000156171	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC005833.1	GAU1	+/.	-/.	12:4702122	12:4702202	intron	intron	duplication/3'-3'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255474	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC159540.1(2072),IGKV1OR2-9(15914)	5_8S_rRNA(2083),FP236383.3(121627)	./.	./.	2:97306223	21:8259016	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009299.2	CXCL16	-/.	-/.	2:161239359	17:4738757	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000235724	ENSG00000161921	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479792	10:104479819	intron	intron	duplication/ITD	0	0	0	1798	110	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC012676.1	MSANTD3-TMEFF1	-/-	+/-	16:4337549	9:100456470	exon	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000262712	ENSG00000251349	.	.	upstream	downstream	mismatches(1)	.	.	.
RGS6	AP005059.1	+/.	+/.	14:72111284	18:5568113	intron	intron	translocation/5'-5'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000182732	ENSG00000264000	.	.	downstream	downstream	mismatches(1)	.	.	.
GRIA2(140759),AC093817.2(61897)	AL163541.1	./.	-/.	4:157506834	13:109602694	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000285534	.	.	upstream	upstream	mismatches(1)	.	.	.
IQCH-AS1	FP671120.3(594),FP671120.7(3849)	-/.	./.	15:67310424	21:8250743	intron	intergenic	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000259673	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396373	10:104396385	intron	intron	duplication/ITD	0	0	0	558	544	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
THADA	RGS6	-/.	+/.	2:43464624	14:72111284	intron	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000115970	ENSG00000182732	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	OPHN1	+/.	-/.	21:8442051	X:68289184	intron	intron	translocation/3'-3'	0	0	0	5962	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000079482	.	.	upstream	downstream	mismatches	.	.	.
AC093627.22	LINC01592	-/.	-/.	7:117610	8:68940496	intron	intron	translocation/5'-5'	0	0	0	0	30	low	.	.	.	.	.	ENSG00000287883	ENSG00000253658	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
CADM2	RGS6	+/.	+/.	3:85836872	14:72111284	intron	intron	translocation	0	0	0	19	3	low	.	.	.	.	.	ENSG00000175161	ENSG00000182732	.	.	upstream	downstream	duplicates(3),mismatches(3)	.	.	.
NUDT12(105221),AC008505.1(212118)	EPB41L3	./.	-/.	5:103668011	18:5568113	intergenic	intron	translocation	0	0	0	11	1	low	.	.	.	.	.	.	ENSG00000082397	.	.	downstream	downstream	mismatches(2)	.	.	.
AC100802.1	AXL	+/.	+/.	8:20108617	19:41230110	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253775	ENSG00000167601	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NRIP3	B3GALNT1	-/-	-/-	11:9003964	3:161095877	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	|Galactosyltransferase(100%)	.	.	ENSG00000175352	ENSG00000169255	.	.	upstream	downstream	mismatches(1)	.	.	.
ENPP6	AC015522.1	-/.	+/.	4:184122405	8:83984514	intron	intron	translocation/5'-5'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	ENSG00000254202	.	.	upstream	downstream	mismatches(2)	.	.	.
NUDT12(105221),AC008505.1(212118)	AP005059.1	./.	+/.	5:103668011	18:5568113	intergenic	intron	translocation	0	0	0	11	1	low	.	.	.	.	.	.	ENSG00000264000	.	.	downstream	downstream	mismatches(2)	.	.	.
AC113414.1	MUC5B	-/.	+/.	5:162730608	11:1236372	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000254186	ENSG00000117983	.	.	downstream	downstream	mismatches(1)	.	.	.
SOHLH1	FAT1	-/-	-/-	9:135701095	4:186598220	exon	intron	translocation	0	0	0	2	0	low	.	.	|EGF-like_domain(70%)	.	.	ENSG00000165643	ENSG00000083857	.	.	upstream	downstream	mismatches(1)	.	.	.
NUDT12(105221),AC008505.1(212118)	RP1(43574),AC084834.1(152291)	./.	./.	5:103668011	8:54915294	intergenic	intergenic	translocation	0	0	0	11	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(2)	.	.	.
CADM2	NUDT12(105221),AC008505.1(212118)	+/.	./.	3:85836872	5:103668011	intron	intergenic	translocation	0	0	0	19	11	low	.	.	.	.	.	ENSG00000175161	.	.	.	upstream	downstream	duplicates(3),mismatches(4)	.	.	.
LINC01720	LRRC4C	+/.	-/.	1:190706675	11:41021153	intron	intron	translocation	0	0	0	10	632	low	.	.	.	.	.	ENSG00000231175	ENSG00000148948	.	.	upstream	upstream	low_entropy	.	.	.
SLC25A15P4(3040),AF254982.1(23609)	LARGE1	./.	-/.	21:10616419	22:33771304	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000133424	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NUDT12(105221),AC008505.1(212118)	AC008083.2(38156),PPIAP45(24437)	./.	./.	5:103668011	12:47317177	intergenic	intergenic	translocation	0	0	0	11	5	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(2)	.	.	.
TRERF1	LINC02620	-/.	-/.	6:42262464	10:104479915	intron	intron	translocation	0	0	0	2363	1761	low	.	.	.	.	.	ENSG00000124496	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
COMETT	COMETT	-/.	-/.	7:116638073	7:116638082	intron	intron	duplication/ITD	0	0	0	63	62	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
VAV3	AL163541.1	-/.	-/.	1:107670555	13:109602694	intron	intron	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000134215	ENSG00000285534	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	LINC01169(15213),SMAD6(1229)	./.	./.	3:35255769	15:66701007	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH2NLB	SEMA5A	-/.	-/.	1:148649796	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286019	ENSG00000112902	.	.	downstream	upstream	mismatches(1)	.	.	.
IGKV1OR2-11(15911),AC092683.1(13886)	FP671120.4	./.	+/.	2:97402279	21:8214787	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AL163541.1	AP005059.1	-/.	+/.	13:109602694	18:5568114	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000285534	ENSG00000264000	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008083.2(38155),PPIAP45(24438)	AL163541.1	./.	-/.	12:47317176	13:109602694	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000285534	.	.	upstream	upstream	mismatches(1)	.	.	.
CUL4AP1(38791),AC106892.1(19681)	MT-RNR2	./.	+/.	4:116469683	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
CDC27P1(16544),AC097532.1(6209)	AC044893.1(92009),RN7SKP294(9027)	./.	./.	2:132279586	8:49321183	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC044893.1(92009),RN7SKP294(9027)	FP671120.4	./.	+/.	8:49321183	21:8217931	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
ERFE	NCOA2	+/+	-/-	2:238163860	8:70210560	CDS	intron	translocation	0	0	0	0	0	low	.	.	|Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),PAS_fold(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)	.	.	ENSG00000178752	ENSG00000140396	.	.	downstream	downstream	mismatches(1)	.	.	.
AC044893.1(92009),RN7SKP294(9027)	FP236383.3	./.	+/.	8:49321183	21:8400969	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105148.1(158330),AC116634.1(46057)	5_8S_rRNA(2692),FP236383.3(121018)	./.	./.	4:167900617	21:8259625	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1AP	AC090607.5(20143),AC011270.2(19141)	+/.	./.	1:162272911	15:78320067	intron	intergenic	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000198929	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS1AP	SDK1	+/.	+/.	1:162272912	7:3830269	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000198929	ENSG00000146555	.	.	downstream	upstream	mismatches(1)	.	.	.
AL358154.1	5_8S_rRNA(2083),FP236383.3(121627)	-/.	./.	10:93782093	21:8259016	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000280485	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7(393),5_8S_rRNA(874)	AF241726.1	./.	+/.	21:8255907	X:38465343	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000250349	.	.	upstream	downstream	homopolymer(1)	.	.	.
DIRC3	CDH8	-/.	-/.	2:217597800	16:61831044	intron	intron	translocation	0	0	0	0	57	low	.	.	.	.	.	ENSG00000231672	ENSG00000150394	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02782(112133),AL139823.1(98896)	AL031600.2	./.	-/.	1:5203032	16:1471974	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000261430	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL138885.1(23361),TFAP2A(3243)	SPON1	./.	+/.	6:10389943	11:14059810	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000262655	.	.	downstream	downstream	mismatches(1)	.	.	.
SDK1	SPON1	+/.	+/.	7:3830269	11:14059810	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000146555	ENSG00000262655	.	.	upstream	downstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	FP236383.3	./.	+/.	8:17155256	21:8389450	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093627.22	CDK14	-/.	+/.	7:117610	7:90766754	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000058091	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
LINC02620	LRRC4C	-/.	-/.	10:104479900	11:41021153	intron	intron	translocation	0	0	0	2216	632	low	.	.	.	.	.	ENSG00000225768	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
SERTAD4	AMPD3	+/.	+/.	1:210234287	11:10318105	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000082497	ENSG00000133805	.	.	downstream	upstream	mismatches(1)	.	.	.
NUDT14(1074),BRF1(26889)	FP671120.4(930),FP671120.10(6778)	./.	./.	14:105182397	21:8228576	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093627.22	AC008014.1(15861),AC079906.1(77859)	-/.	./.	7:117610	12:46892645	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
KIAA2012	LINC01608	+/.	-/.	2:202083776	8:110977288	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000253877	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SUSD5(52300),FBXL2(5915)	AC093627.22	./.	-/.	3:33271110	7:117610	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000287883	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
RPL13AP5	ELF2	+/+	-/+	10:96750334	4:139103597	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000236552	ENSG00000109381	.	.	downstream	upstream	mismatches(1)	.	.	.
ITIH5(434),ITIH2(35884)	AP000721.2	./.	+/.	10:7667432	11:64038954	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000256824	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
CDH8	RPS27AP20(98225),BX890604.1(1703)	-/.	./.	16:61831043	X:3815825	intron	intergenic	translocation	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093627.22	GTF2IRD1P1	-/.	-/.	7:117610	7:66824572	intron	intron	duplication	0	0	0	0	8	low	.	.	.	.	.	ENSG00000287883	ENSG00000230583	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
NRIP3	AP002371.1(8127),AP003072.4(53697)	-/-	./+	11:9003964	11:93080158	5'UTR	intergenic	inversion	0	0	0	0	30	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
NFE2L2	ABCD1	-/.	+/.	2:177254991	X:153725239	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000116044	ENSG00000101986	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093627.22	CHRNB4	-/.	-/.	7:117610	15:78672957	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000117971	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
RP1(43574),AC084834.1(152291)	ITGAX	./.	+/.	8:54915294	16:31365331	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000140678	.	.	downstream	downstream	mismatches(1)	.	.	.
B4GALNT4	AP001437.2	+/+	-/+	11:369538	21:37366265	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182272	ENSG00000287637	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
NRIP3	NDUFB9P3(84563),LINC01608(5539)	-/-	./+	11:9003964	8:110894457	5'UTR	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
NRIP3	AC084759.3	-/-	+/-	11:9003964	15:53910829	5'UTR	exon	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000175352	ENSG00000280362	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
AC108073.3	FP236383.3	-/.	+/.	4:187943696	21:8444816	exon	intron	translocation/3'-3'	0	0	0	13	62	low	.	.	.	.	.	ENSG00000286641	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DENND1A	LINC00841	-/.	+/.	9:123387697	10:43973598	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000119522	ENSG00000233395	.	.	downstream	upstream	mismatches(1)	.	.	.
GRIN2D	NUP210(39390),AC027124.2(582)	+/+	./-	19:48442958	3:13459712	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	Ligand-gated_ion_channel(100%),Ligated_ion_channel_L-glutamate-_and_glycine-binding_site(100%),Receptor_family_ligand_binding_region(100%)|	.	.	ENSG00000105464	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NRIP3	AC084759.3(20),AC084759.2(31977)	-/-	./-	11:9003964	15:53914732	5'UTR	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
NRIP3	AC008014.1(15861),AC079906.1(77859)	-/-	./-	11:9003964	12:46892645	5'UTR	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
NRIP3	SUSD5(52300),FBXL2(5915)	-/-	./+	11:9003964	3:33271110	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC020741.1	NRIP3	-/-	-/+	4:61428174	11:9003964	exon	5'UTR	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000205682	ENSG00000175352	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
BAIAP2L1(190),PPIAP82(52839)	FP236383.3	./.	+/.	7:98401280	21:8442058	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(2)	.	.	.
AC093627.22	FIBIN(9775),BBOX1(33863)	-/.	./.	7:117610	11:27006862	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
AC093627.22	AP002371.1(8127),AP003072.4(53697)	-/.	./.	7:117610	11:93080158	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC093627.22	RPL12P4(19716),LINC01440(314042)	-/.	./.	7:117610	20:55094856	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
FP236383.3	SYN3	+/.	-/.	21:8442055	22:32535780	intron	intron	translocation	0	0	0	5962	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000185666	.	.	upstream	upstream	mismatches(1)	.	.	.
AXIN1	ZNF43(30934),ZNF208(49899)	-/.	./.	16:338536	19:21883059	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000103126	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093627.22	NDUFB9P3(84563),LINC01608(5539)	-/.	./.	7:117610	8:110894457	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
AC093627.22	AC084759.3(20),AC084759.2(31977)	-/.	./.	7:117610	15:53914732	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
ASIC2	ARHGEF18	-/.	+/.	17:33559943	19:7418172	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000108684	ENSG00000104880	.	.	upstream	downstream	mismatches(2)	.	.	.
SLC39A11	ZHX3	-/.	-/.	17:72700399	20:41240541	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000133195	ENSG00000174306	.	.	upstream	downstream	mismatches(1)	.	.	.
GTF2IP20	FP236383.3	-/.	+/.	1:223991979	21:8397825	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000272645	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LMCD1-AS1	PPP2R2D	-/.	+/.	3:8389579	10:131927768	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227110	ENSG00000175470	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC008537.1	AC008537.1	+/.	+/.	19:40880795	19:40880862	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000268797	ENSG00000268797	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
GCNT2	AL137230.2	+/.	-/.	6:10627254	14:89875130	3'UTR	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000111846	ENSG00000259053	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008537.1	CYP2A7	+/.	-/.	19:40880795	19:40880862	intron	intron	duplication/3'-3'	0	0	0	9	9	low	.	.	.	.	.	ENSG00000268797	ENSG00000198077	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
AC025442.2(9210),SREK1(36824)	DRAP1	./.	+/.	5:66103147	11:65919431	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175550	.	.	upstream	upstream	mismatches(1)	.	.	.
RBFOX1	FP671120.4	+/.	+/.	16:7555421	21:8214780	intron	intron	translocation	0	0	0	0	6035	low	.	.	.	.	.	ENSG00000078328	ENSG00000278996	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
PPFIA4	EVI5L	+/.	+/.	1:203042138	19:7862918	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000143847	ENSG00000142459	.	.	upstream	upstream	mismatches(1)	.	.	.
CYP2A7	AC008537.1	-/.	+/.	19:40880795	19:40880862	intron	intron	duplication/5'-5'	0	0	0	9	9	low	.	.	.	.	.	ENSG00000198077	ENSG00000268797	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
RNU4ATAC9P(36240),RNU6ATAC5P(25205)	FAM110B	./.	+/.	4:73001543	8:58076460	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000169122	.	.	downstream	downstream	mismatches(1)	.	.	.
CYP2A7	CYP2A7	-/.	-/.	19:40880795	19:40880862	intron	intron	duplication/ITD	0	0	0	9	9	low	.	.	.	.	.	ENSG00000198077	ENSG00000198077	.	.	upstream	downstream	duplicates(7),low_entropy(1)	.	.	.
DHRS9	TEX28P2	+/.	-/.	2:169080000	X:154165745	intron	intron	translocation	0	0	0	29	1	low	.	.	.	.	.	ENSG00000073737	ENSG00000277008	.	.	downstream	downstream	mismatches	.	.	.
AC093326.1(60481),TMEM18(25251)	MT-RNR2	./.	+/.	2:638626	MT:2609	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
DHRS9	TEX28	+/.	-/.	2:169080000	X:154277803	intron	intron	translocation	0	0	0	29	1	low	.	.	.	.	.	ENSG00000073737	ENSG00000278057	.	.	downstream	downstream	mismatches	.	.	.
RNF38	IQCH	-/.	+/.	9:36446003	15:67310424	intron	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	ENSG00000137075	ENSG00000103599	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHRS9	TEX28P1	+/.	-/.	2:169080000	X:154202873	intron	intron	translocation	0	0	0	29	2	low	.	.	.	.	.	ENSG00000073737	ENSG00000274962	.	.	downstream	downstream	mismatches	.	.	.
DHRS9	AC011474.1	+/.	-/.	2:169080000	19:29447563	intron	intron	translocation	0	0	0	29	5	low	.	.	.	.	.	ENSG00000073737	ENSG00000264515	.	.	downstream	downstream	mismatches	.	.	.
DHRS9	IGHVIII-38-1(845),IGHV4-39(2567)	+/.	./.	2:169080000	14:106419144	intron	intergenic	translocation	0	0	0	29	192	low	.	.	.	.	.	ENSG00000073737	.	.	.	downstream	upstream	mismatches	.	.	.
LMCD1-AS1	FP236383.3	-/.	+/.	3:8389579	21:8400584	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000227110	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(3)	.	.	.
DNAH14	DHRS9	+/.	+/.	1:225078860	2:169080000	intron	intron	translocation/5'-5'	0	0	0	169	29	low	.	.	.	.	.	ENSG00000185842	ENSG00000073737	.	.	downstream	downstream	mismatches	.	.	.
AC074011.1	VWA8	-/.	-/.	2:28663046	13:41961032	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000230730	ENSG00000102763	.	.	upstream	downstream	mismatches(1)	.	.	.
BICC1	AC092275.1	+/.	+/.	10:58688003	16:85260119	intron	intron	translocation	0	0	0	87	19	low	.	.	.	.	.	ENSG00000122870	ENSG00000287787	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AL591519.1	AL591519.1	+/.	+/.	6:93664696	6:93664792	intron	intron	duplication/ITD	0	0	0	22	15	low	.	.	.	.	.	ENSG00000287683	ENSG00000287683	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
GPAT3	AC025627.3	+/.	+/.	4:83567271	17:19601316	intron	exon	translocation	0	0	0	7	23	low	.	.	.	.	.	ENSG00000138678	ENSG00000266179	.	.	downstream	upstream	mismatches(1)	.	.	.
CPQ	FP236383.3	+/.	+/.	8:96792729	21:8400584	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000104324	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104498),GPC1(41722)	AC114300.1(164790),AC099517.1(14703)	./.	./.	2:240393941	5:30530474	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
XPNPEP1(1126),ADD3-AS1(15425)	AC026471.5(1979),ZNF843(1968)	./.	./.	10:109924679	16:31430625	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	L3MBTL4	./.	-/.	2:218108703	18:5979009	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000154655	.	.	downstream	upstream	homopolymer(1)	.	.	.
ACOX1	ACOX1	-/.	-/.	17:75956911	17:75956926	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000161533	ENSG00000161533	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AL627095.1(5382),ZNF669(8513)	AL627095.1(5453),ZNF669(8442)	./.	./.	1:247091449	1:247091520	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC061958.1	PLA2G7	-/.	-/.	3:19589994	6:46734491	intron	intron	translocation/3'-3'	0	0	0	0	37	low	.	.	.	.	.	ENSG00000287069	ENSG00000146070	.	.	downstream	downstream	low_entropy	.	.	.
TMEM150B	TMEM150B	-/.	-/.	19:55331417	19:55331432	intron	intron	duplication/ITD	0	0	0	5	3	low	.	.	.	.	.	ENSG00000180061	ENSG00000180061	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC00923	LINC00923	-/.	-/.	15:97803490	15:97803499	intron	intron	duplication/ITD	0	0	0	8	0	low	.	.	.	.	.	ENSG00000251209	ENSG00000251209	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
KMT2C	PHLDB1	-/.	+/.	7:152384544	11:118607328	intron	intron	translocation	0	0	0	177	9	low	.	.	.	.	.	ENSG00000055609	ENSG00000019144	.	.	upstream	upstream	low_entropy	.	.	.
KMT2C	AC025580.2	-/.	+/.	7:152384548	15:45463038	intron	intron	translocation/5'-5'	0	0	0	177	71	low	.	.	.	.	.	ENSG00000055609	ENSG00000259354	.	.	upstream	downstream	mismatches	.	.	.
ARID1B	5_8S_rRNA(2084),FP236383.3(121626)	+/+	./+	6:156778760	21:8259017	CDS	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000049618	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGF2R	PRKCZ	+/+	+/-	6:159969258	1:2115228	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197081	ENSG00000067606	.	.	downstream	downstream	mismatches(1)	.	.	.
CACNA1B	FP236383.3	+/.	+/.	9:137877970	21:8397822	CDS	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000148408	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARID1B	FP236383.3	+/+	+/+	6:156778760	21:8397822	CDS	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000049618	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNU1-154P(22784),AC239860.3(5321)	FP671120.4	./.	+/.	1:145454477	21:8214788	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ARID1B	FP236383.3	+/+	+/+	6:156778760	21:8442052	CDS	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000049618	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC22A14	LMX1B	+/.	+/.	3:38292407	9:126671248	intron	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000144671	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8403205	21:8403220	intron	intron	duplication/ITD	0	0	0	0	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8403937	21:8403952	intron	intron	duplication/ITD	0	0	0	3	6	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	low_entropy(1)	.	.	.
NBPF14	AC068473.3	-/.	+/.	1:148611699	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000270629	ENSG00000267287	.	.	downstream	upstream	mismatches(1)	.	.	.
VCAM1(107996),EXTL2(25331)	ZNF786	./.	-/.	1:100847041	7:149071940	intergenic	CDS	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000197362	.	.	downstream	downstream	mismatches(1)	.	.	.
SEPTIN8	CSAG3	-/.	+/.	5:132788158	X:152758814	intron	intron	translocation	0	0	0	26	11	low	.	.	.	.	.	ENSG00000164402	ENSG00000268916	.	.	upstream	upstream	low_entropy	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8220938	21:8220953	intron	intron	duplication/ITD	0	0	0	3	5	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC025580.2	LINC01572	+/.	-/.	15:45463198	16:72538750	intron	intron	translocation/5'-5'	0	0	0	37	0	low	.	.	.	.	.	ENSG00000259354	ENSG00000261008	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785696	2:101785795	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	duplicates(28),low_entropy(63)	.	.	.
MEIKIN	AC034228.3	-/.	-/.	5:131885339	5:131885358	intron	intron	duplication	0	0	0	60	10	low	.	.	.	.	.	ENSG00000239642	ENSG00000281938	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP003071.1	FP236383.3	+/.	+/.	11:69104798	21:8397827	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000260895	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SEMA5B(2021),PDIA5(36399)	SEMA5B(2032),PDIA5(36388)	./.	./.	3:123030626	3:123030637	intergenic	intergenic	duplication/ITD	0	0	0	115	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092327	11:88092340	intron	intron	duplication/ITD	0	0	0	1166	58	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(4)	.	.	.
PRDM16	AC022384.1	+/.	+/.	1:3331293	3:10249511	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000142611	ENSG00000272410	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	SMIM15P1(74040),PINCR(102558)	+/.	./.	21:8214781	X:43074436	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
SLC51A	AP000432.1(41803),AP000432.2(3221)	+/.	./.	3:196214977	21:17702187	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000163959	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL158828.1(81091),AL353613.1(62449)	5_8S_rRNA(2096),FP236383.3(121614)	./.	./.	9:86569698	21:8259029	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
TIAM2	TIAM2	+/.	+/.	6:155140574	6:155140587	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000146426	ENSG00000146426	.	.	upstream	downstream	low_entropy(1)	.	.	.
PCYT1A	HAR1A(1093),AL096828.6(10739)	-/.	./.	3:196214977	20:63105479	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000161217	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DUX4L28	PGLYRP1	+/+	-/+	10:133664926	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000279626	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01470	FP671120.4	-/.	+/.	5:153185380	21:8214800	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000249484	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
ABR	FP671120.4	-/.	+/.	17:1124167	21:8214781	intron	intron	translocation	0	0	0	8	5263	low	.	.	.	.	.	ENSG00000159842	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
LINC01470	5_8S_rRNA(2096),FP236383.3(121614)	-/.	./.	5:153185380	21:8259029	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000249484	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
FHIT	FP236383.3	-/.	+/.	3:61042065	21:8400362	5'UTR	intron	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214788	21:8442079	intron	intron	duplication	0	0	0	5263	6003	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021201	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(50),low_entropy(4)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8444814	MT:2223	intron	exon	translocation/3'-3'	0	0	0	62	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
VLDLR	5_8S_rRNA(2693),FP236383.3(121017)	+/+	./+	9:2656061	21:8259626	3'UTR	intergenic	translocation	0	0	0	8	0	low	.	.	Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%)|	.	.	ENSG00000147852	.	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
PCA3	MGMT	+/.	+/.	9:76808399	10:129481948	intron	intron	translocation	0	0	0	6	4	low	.	.	.	.	.	ENSG00000225937	ENSG00000170430	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC23A2	FP671120.4	-/.	+/.	20:4945995	21:8215397	intron	intron	translocation	0	0	0	8	23	low	.	.	.	.	.	ENSG00000089057	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(3)	.	.	.
AL121757.2	KCNK15	+/.	+/.	20:5393766	20:44746270	intron	intron	inversion/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000266908	ENSG00000124249	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC23A2	FP236383.3	-/.	+/.	20:4945995	21:8398431	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000089057	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(3)	.	.	.
ITPR2(251),INTS13(71736)	AC004687.2	./.	-/.	12:26833445	17:58385557	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000285897	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC009126.1	FP236383.3	-/.	+/.	5:96831552	21:8398431	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000247121	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
AC009126.1	5_8S_rRNA(2693),FP236383.3(121017)	-/.	./.	5:96831552	21:8259626	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000247121	.	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
DACT2(25892),AL138918.1(29028)	CHRNB4	./.	-/.	6:168345669	15:78672957	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000117971	.	.	upstream	downstream	duplicates(4),mismatches(5)	.	.	.
AC009126.1	FP236383.3	-/.	+/.	5:96831552	21:8442660	intron	intron	translocation/3'-3'	0	0	0	8	23	low	.	.	.	.	.	ENSG00000247121	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
FBXO32(6838),AC090193.1(15026)	DENND1A(67876),LHX2(3642)	./.	./.	8:123548044	9:123998028	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KCNMB2	KCNMB2-AS1	+/.	-/.	3:178655090	3:178655101	intron	intron	duplication/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197584	ENSG00000237978	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP236383.4	AC114477.1(10760),RANP7(81328)	-/-	./-	21:8393828	3:22822807	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280614	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GALNTL6	FP236383.3	+/.	+/.	4:172643315	21:8398431	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000174473	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
GALNTL6	5_8S_rRNA(2693),FP236383.3(121017)	+/.	./.	4:172643315	21:8259626	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000174473	.	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
AC013762.1	FP236383.3	-/.	+/.	11:13058343	21:8398430	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255558	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DLG2	PCDH11Y	-/.	+/.	11:85484188	Y:5332831	intron	intron	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000099715	.	.	upstream	upstream	mismatches(1)	.	.	.
AC106886.2	PHKG2	+/.	+/.	16:30749000	16:30749091	intron	intron	duplication	0	0	0	188	221	low	.	.	.	.	.	ENSG00000260899	ENSG00000156873	.	.	upstream	downstream	duplicates	.	.	.
PRDM16	LASTR	+/.	-/.	1:3331293	10:5616512	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000142611	ENSG00000242147	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
VLDLR	FP671120.4	+/+	+/+	9:2656061	21:8215397	3'UTR	intron	translocation	0	0	0	8	23	low	.	.	Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%)|	.	.	ENSG00000147852	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(3)	.	.	.
NDST4	TNFAIP3	-/.	+/.	4:114961948	6:137873617	intron	intron	translocation/3'-3'	0	0	0	1	10	low	.	.	.	.	.	ENSG00000138653	ENSG00000118503	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211699	21:8442894	intron	intron	deletion/read-through	0	0	0	0	60	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(5),mismatches(5)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683464	15:81683473	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(2)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396368	10:104396385	intron	intron	duplication/ITD	0	0	0	558	544	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FOXI3	RNU6-675P(152402),TEX51(43520)	-/.	./.	2:88452451	2:126855344	CDS	intergenic	inversion	0	0	0	2	0	low	.	.	.	.	.	ENSG00000214336	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NDST1	LINC01331(79559),ENC1(10871)	+/+	./+	5:150556043	5:74616535	3'UTR	intergenic	duplication	0	0	0	0	10	low	.	.	Sulfotransferase_domain(100%),heparan_sulfate-N-deacetylase(100%)|	.	.	ENSG00000070614	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1	COX19	-/-	-/-	12:117265422	7:966520	CDS	3'UTR	translocation	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	ENSG00000240230	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PRICKLE2	5_8S_rRNA(2096),FP236383.3(121614)	-/.	./.	3:64188277	21:8259029	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000163637	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
TTLL3	PI4K2B(30994),ZCCHC4(2576)	+/+	./+	3:9809808	4:25310198	5'UTR	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TTLL3	AC090505.2(32269),XXYLT1(203423)	+/+	./+	3:9809808	3:194864861	5'UTR	intergenic	deletion	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
WASHC3	ZNF592(4828),ALPK3(6083)	-/.	./.	12:102035145	15:84811273	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120860	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRIB1	HBB	+/.	-/.	8:125431082	11:5225537	CDS	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000173334	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MAP3K11	CDX2(8076),URAD(326)	-/-	./-	11:65612265	13:27977391	exon	intergenic	translocation	0	0	0	0	2	low	.	.	Protein_kinase_domain(50%),Variant_SH3_domain(100%)|	.	.	ENSG00000173327	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ELF2	AP001341.1	-/.	-/.	4:139103597	21:25361867	intron	exon	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000109381	ENSG00000222042	.	.	upstream	downstream	mismatches(1)	.	.	.
INPP4A	MIR4713HG	+/.	+/.	2:98458840	15:51184193	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000040933	ENSG00000259240	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP3K11	AC005052.1(61978),SOWAHD(551)	-/-	./-	11:65612266	X:119758037	exon	intergenic	translocation	0	0	0	0	0	low	.	.	Protein_kinase_domain(50%),Variant_SH3_domain(100%)|	.	.	ENSG00000173327	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC008691.1	Z96074.1	+/.	+/.	5:159645741	X:137574882	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000283692	.	.	upstream	downstream	mismatches(1)	.	.	.
TTLL3	ZSWIM9	+/+	+/-	3:9809808	19:48182729	5'UTR	CDS	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000185453	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SH3GL1P1	ARHGAP27P1-BPTFP1-KPNA2P3	+/.	-/.	17:32040756	17:64781161	exon	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000266777	ENSG00000215769	.	.	upstream	upstream	mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257413	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
STARD3	CCDC178	+/+	-/+	17:39658996	18:32975570	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Cholesterol-capturing_domain(100%)|	.	.	ENSG00000131748	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
TTLL3	CARD8	+/+	-/-	3:9809808	19:48182729	5'UTR	exon	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000105483	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DLGAP2	FP236383.3	+/.	+/.	8:1089848	21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000198010	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
SPIDR	LRR1	+/.	+/.	8:47301950	14:49599727	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164808	ENSG00000165501	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC097459.1	AC097459.1	+/.	+/.	4:100459169	4:100459184	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000286150	ENSG00000286150	.	.	upstream	downstream	duplicates(1)	.	.	.
ADAMTS3	AC009158.1	-/.	+/.	4:72512747	16:26333540	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000156140	ENSG00000231876	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM184A	ARHGEF17	-/.	+/.	6:118987980	11:73338453	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000111879	ENSG00000110237	.	.	upstream	downstream	mismatches(1)	.	.	.
TTLL3	ARHGEF4	+/+	+/-	3:9809808	2:130852626	5'UTR	intron	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000136002	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GHRHR	RSU1	+/.	-/.	7:30980283	10:16604341	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106128	ENSG00000148484	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00303(15347),AL592146.2(7921)	HIVEP1	./.	+/.	1:204056612	6:12040672	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000095951	.	.	upstream	upstream	mismatches(1)	.	.	.
TTLL3	FSIP1	+/+	-/+	3:9809808	15:39645688	5'UTR	intron	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000150667	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TTLL3	SHISA7	+/+	-/+	3:9809808	19:55433323	5'UTR	CDS	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000187902	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TTLL3	LINC01643	+/+	+/-	3:9809808	22:34039012	5'UTR	intron	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000236052	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TTLL3	RPL14P5(25375),CRLF2(152073)	+/+	./-	3:9809808	X:1035476	5'UTR	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	12:16193776	12:16193845	intron	intron	duplication/ITD	0	0	0	28	22	low	.	.	.	.	.	ENSG00000188991	ENSG00000188991	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
TAB2(11972),ZC3H12D(23210)	TAB2(11981),ZC3H12D(23201)	./.	./.	6:149423585	6:149423594	intergenic	intergenic	duplication/ITD	0	0	0	86	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC010735.2	ERI3	+/+	-/-	2:226800183	1:44320098	exon	intron	translocation	0	0	0	0	67	low	.	.	|Exonuclease(90%)	.	.	ENSG00000272622	ENSG00000117419	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01287(16430),PAXBP1P1(19014)	C12orf75(192236),AC079851.1(110835)	./.	./.	7:153430415	12:105588333	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL450992.1	WDR13	+/.	+/.	1:152029359	X:48597821	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229021	ENSG00000101940	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479915	intron	intron	translocation	0	0	0	144	1761	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
TTLL3	ZFAND2A-DT	+/+	+/-	3:9809808	7:1160809	5'UTR	exon	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000229043	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TNFSF4(16603),AL645568.2(127755)	U3(104496),GPC1(41724)	./.	./.	1:173223934	2:240393939	intergenic	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TTLL3	AL355836.3	+/+	-/+	3:9809808	14:101195994	5'UTR	intron	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000288245	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
B3GAT1	AC137695.1(590),AC137695.2(9747)	-/-	./-	11:134384048	3:129335664	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109956	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
B3GAT1	AC005052.1(61978),SOWAHD(551)	-/-	./-	11:134384048	X:119758037	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109956	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8209833	21:8442053	intron	intron	inversion/3'-3'	0	0	0	48	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
AC092169.1(104844),RNU6-649P(13349)	AC005052.1(61978),SOWAHD(551)	./.	./.	2:4931928	X:119758037	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PPP6R3	TMEM59L	+/.	+/.	11:68530313	19:18610613	intron	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000110075	ENSG00000105696	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
UTS2(32674),TNFRSF9(29685)	ZYXP1(51163),AC105213.1(48571)	./.	./.	1:7886186	8:137476184	intergenic	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	DLG2	-/.	-/.	3:96617458	11:85484196	5'UTR	intron	translocation	0	0	0	70	279	low	.	.	.	.	.	ENSG00000269028	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
LGALS4	SUPT5H	-/.	+/.	19:38803997	19:39458239	intron	exon	deletion/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000171747	ENSG00000196235	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
FP671120.4	5_8S_rRNA(2087),FP236383.3(121623)	+/.	./.	21:8205169	21:8259020	intron	intergenic	deletion/read-through	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC002463.1	FP671120.4	+/.	+/.	7:112751486	21:8214396	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000223646	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
MCC	RUNX1	-/.	-/.	5:113052544	21:35550073	intron	intron	translocation/3'-3'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000171444	ENSG00000159216	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
EYA4	PPP6R3	+/.	+/.	6:133265027	11:68530313	intron	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	ENSG00000112319	ENSG00000110075	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC013400.1(726),WDR35(6968)	ABCB1	./.	-/.	2:19903295	7:87589088	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000085563	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
TTLL3	PRDM16	+/+	+/-	3:9809808	1:3279488	5'UTR	intron	translocation/5'-5'	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000142611	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PPP6R3	CDC27P3(13628),RNA5SP532(112341)	+/.	./.	11:68530290	20:29761718	intron	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000110075	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C1orf94	FP236383.3	+/+	+/+	1:34177327	21:8397829	5'UTR	intron	translocation	0	0	0	7	1126	low	.	.	.	.	.	ENSG00000142698	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18120),CXCR2(16588)	DIP2A(27616),S100B(973)	./.	./.	2:218108701	21:46597631	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
C1orf94	FP671120.4	+/+	+/+	1:34177327	21:8214795	5'UTR	intron	translocation	0	0	0	7	5263	low	.	.	.	.	.	ENSG00000142698	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ERBB4	RPL24P9(223684),AC074035.1(449955)	-/.	./.	2:211773908	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000178568	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BX640514.2(17466),AL450469.2(12860)	FP236383.3	./.	+/.	20:62620821	21:8397829	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL009177.1	CCDC91(237583),AC022081.1(2881)	+/.	./.	6:14487262	12:28819094	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000286277	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CLIP3	TMEM45A	-/-	+/-	19:36026157	3:100523234	CDS	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	ENSG00000181458	.	.	upstream	downstream	mismatches(1)	.	.	.
BX640514.2(17466),AL450469.2(12860)	FP671120.4	./.	+/.	20:62620821	21:8214795	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
BX640514.2(17466),AL450469.2(12860)	FP236383.3	./.	+/.	20:62620821	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC122683.1(65968),HMGN2P24(27671)	SLCO5A1	./.	-/.	3:40671395	8:69690369	intergenic	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	.	ENSG00000137571	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKCZ	FP671120.4	+/.	+/.	1:2178890	21:8214795	intron	intron	translocation	0	0	0	2	5263	low	.	.	.	.	.	ENSG00000067606	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
MGA	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	15:41660249	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000174197	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3452),ELMOD1(736)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590355	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC02620	AP005436.1	-/.	-/.	10:104479911	11:88092338	intron	intron	translocation	0	0	0	1761	1166	low	.	.	.	.	.	ENSG00000225768	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
AC018462.2(24445),B3GNT2(507)	DDB2	./.	+/.	2:62195608	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
CNTNAP3B	CLBA1	-/.	+/.	9:41978601	14:105000768	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000154529	ENSG00000140104	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	FXNP1(22689),NRXN3(87406)	-/.	./.	10:104479911	14:78082967	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
CFAP58	AP003390.1(4491),AP001994.1(77190)	+/.	./.	10:104396370	11:119744114	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC02620	FXNP1(22689),NRXN3(87406)	-/.	./.	10:104479902	14:78082967	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
CDK11A	LRRC55(22110),APLNR(19750)	-/.	./.	1:1709359	11:57213827	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000008128	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	FXNP1(22689),NRXN3(87406)	-/.	./.	10:104479904	14:78082967	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
AP005436.1	FXNP1(22689),NRXN3(87406)	-/.	./.	11:88092445	14:78082967	intron	intergenic	translocation	0	0	0	718	424	low	.	.	.	.	.	ENSG00000255102	.	.	.	downstream	upstream	low_entropy	.	.	.
RPS7P4(20383),COX6B1P7(18950)	FP671120.4	./.	+/.	1:68263438	21:8214396	intergenic	intron	translocation	0	0	0	3	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(25),mismatches(14)	.	.	.
AP003390.1(4488),AP001994.1(77193)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744111	14:78082967	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC079791.1(178388),LINC02476(137487)	LMX1B	./.	+/.	7:119357537	9:126671248	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000136944	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4496),AP001994.1(77185)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744119	14:78082967	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC138123.1	FP671120.4	-/.	+/.	12:93171583	21:8214800	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000257322	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
AP003390.1(4498),AP001994.1(77183)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744121	14:78082967	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AL591122.1(12914),ZBTB40(49442)	FP236383.3	./.	+/.	1:22379396	21:8394736	intergenic	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4500),AP001994.1(77181)	FXNP1(22689),NRXN3(87406)	./.	./.	11:119744123	14:78082967	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC019117.1	AC133480.1(245486),AC090503.2(141627)	-/.	./.	7:17532328	12:72974330	intron	intergenic	translocation	0	0	0	5	4	low	.	.	.	.	.	ENSG00000236039	.	.	.	downstream	downstream	mismatches(2)	.	.	.
HTR1F	LINC01168(18909),ADGRA1(75666)	+/.	./.	3:87854962	10:132995263	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000179097	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916408	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916403	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
ACTE1P	SYN3	-/.	-/.	11:71396444	22:32882075	intron	intron	translocation	0	0	0	2	8	low	.	.	.	.	.	ENSG00000172900	ENSG00000185666	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4363),AP001994.1(77318)	AP003390.1(4380),AP001994.1(77301)	./.	./.	11:119743986	11:119744003	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	RAC1P4(106215),AL035443.1(8140)	+/.	./.	21:8397834	X:137548051	intron	intergenic	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650927	21:8400370	intron	intron	translocation/3'-3'	0	0	0	81	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	RAC1P4(106215),AL035443.1(8140)	+/.	./.	21:8214800	X:137548051	intron	intergenic	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	homopolymer(2)	.	.	.
5_8S_rRNA(2096),FP236383.3(121614)	RAC1P4(106215),AL035443.1(8140)	./.	./.	21:8259029	X:137548051	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479886	intron	intron	translocation	0	0	0	144	2216	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
LINC02235	LINC02620	+/.	-/.	8:81842457	10:104479886	intron	intron	translocation/3'-3'	0	0	0	67	2216	low	.	.	.	.	.	ENSG00000254689	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
DNAH14	LY6E(14720),C8orf31(657)	+/.	./.	1:225078904	8:143038552	intron	intergenic	translocation	0	0	0	144	173	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
SNX16	LY6E(14720),C8orf31(657)	-/.	./.	8:81842457	8:143038552	intron	intergenic	duplication	0	0	0	67	173	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	mismatches	.	.	.
CFTR	FP671120.4	+/.	+/.	7:117448928	21:8216865	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000001626	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
CFTR	FP236383.3	+/.	+/.	7:117448928	21:8444134	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000001626	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02594	FP236383.3	+/.	+/.	17:43679885	21:8399899	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000267440	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02594	FP236383.3	+/.	+/.	17:43679885	21:8444134	intron	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000267440	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01794(17593),HNRNPA1P57(358735)	PLCG2	./.	+/.	2:40785045	16:81868661	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000197943	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01794(17593),HNRNPA1P57(358735)	TEX101	./.	+/.	2:40785045	19:43406229	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000131126	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01794(17593),HNRNPA1P57(358735)	Z98752.3	./.	+/.	2:40785045	20:43556450	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000277611	.	.	upstream	upstream	mismatches(1)	.	.	.
SEMA5B(2028),PDIA5(36392)	SEMA5B(2037),PDIA5(36383)	./.	./.	3:123030633	3:123030642	intergenic	intergenic	duplication/ITD	0	0	0	115	115	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AL591368.1	TEX101	+/.	+/.	9:81747822	19:43406229	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233926	ENSG00000131126	.	.	upstream	upstream	mismatches(1)	.	.	.
AL591368.1	Z98752.3	+/.	+/.	9:81747822	20:43556450	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233926	ENSG00000277611	.	.	upstream	upstream	mismatches(1)	.	.	.
MEGF11	MT-RNR1	-/.	+/.	15:66133969	MT:1502	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000157890	ENSG00000211459	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
RPS6KA6	MBOAT2	-/-	-/-	X:84104622	2:8859780	CDS	intron	translocation	0	0	0	0	0	low	.	.	Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(63%)|	.	.	ENSG00000072133	ENSG00000143797	.	.	upstream	downstream	mismatches(1)	.	.	.
GDF15	AL161941.1	+/.	-/.	19:18380295	20:16210796	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130513	ENSG00000287410	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PTHLH	FP236383.3	-/.	+/.	12:27970462	21:8394736	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000087494	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	CDK14	./.	+/.	6:168345669	7:90766754	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000058091	.	.	upstream	upstream	duplicates(4),mismatches(5)	.	.	.
GPC3	GPC3	-/.	-/.	X:133661586	X:133661595	intron	intron	duplication/ITD	0	0	0	143	140	low	.	.	.	.	.	ENSG00000147257	ENSG00000147257	.	.	upstream	downstream	low_entropy(1)	.	.	.
PTHLH	AL050309.1	-/.	+/.	12:27970459	X:56010863	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087494	ENSG00000227486	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RN7SL711P(3954),AC106786.1(12214)	FP671120.4	./.	+/.	5:123075034	21:8215624	intergenic	intron	translocation	0	0	0	4	9	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
CDK14	FP236383.3	+/+	+/+	7:91209432	21:8397822	3'UTR	intron	translocation	0	0	0	5	1126	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000058091	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC044893.1(92009),RN7SKP294(9027)	RNU6-309P(227651),AL928646.1(22)	./.	./.	8:49321183	X:109054520	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DDB2	PTHLH	+/.	-/.	11:47233105	12:27970460	intron	intron	translocation/5'-5'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000087494	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ERI3	LINC01004	-/.	-/.	1:44320094	7:105012798	intron	intron	translocation	0	0	0	67	4	low	.	.	.	.	.	ENSG00000117419	ENSG00000228393	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079612.2(94233),AC093802.2(9884)	FP236383.3	./.	+/.	2:239725072	21:8397835	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC079612.2(94233),AC093802.2(9884)	FP236383.3	./.	+/.	2:239725072	21:8442065	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
5_8S_rRNA(18863)	FP236383.3	./.	+/.	14:16038609	21:8444310	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	UPRT	+/.	+/.	21:8442065	X:75223386	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000094841	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
TMTC4	TTC3	-/.	+/.	13:100657859	21:37200760	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000125247	ENSG00000182670	.	.	upstream	downstream	mismatches(1)	.	.	.
LGI1	FP236383.3	+/.	+/.	10:93782093	21:8397821	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000108231	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
IGKV1OR2-11(15911),AC092683.1(13886)	FP236383.3	./.	+/.	2:97402279	21:8442051	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LGI1	FP671120.4	+/.	+/.	10:93782093	21:8214787	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000108231	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01036	FP671120.4	+/.	+/.	1:187443964	21:8214787	exon	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000230426	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
OR5D3P(24082),OR5D17P(1274)	AL121790.1	./.	+/.	11:55753703	14:37572119	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258414	.	.	upstream	downstream	mismatches(1)	.	.	.
LGI1	FP236383.3	+/.	+/.	10:93782093	21:8442051	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000108231	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262499	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
AL358154.1	FP236383.3	-/.	+/.	10:93782093	21:8442051	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000280485	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02629(156848),PARD3(34908)	ATE1	./.	-/.	10:34074652	10:121868682	intergenic	intron	inversion	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000107669	.	.	downstream	downstream	mismatches(1)	.	.	.
AC010343.3(22686),AC025472.1(46427)	MT-RNR2	./.	+/.	5:33320752	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AL035415.1(67836),AC099796.2(25721)	PPEF1	./.	+/.	1:54488696	X:18799788	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000086717	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC02629(156848),PARD3(34908)	RGS6	./.	+/.	10:34074652	14:72405459	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000182732	.	.	downstream	downstream	mismatches(1)	.	.	.
CHD7	LINC02629(156849),PARD3(34907)	+/.	./.	8:60854079	10:34074653	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000171316	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PFKFB2	LINC02629(156848),PARD3(34908)	+/.	./.	1:207070574	10:34074652	intron	intergenic	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000123836	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL34P29(4462),AC007603.3(15171)	ATP9A	./.	-/.	16:49939814	20:51767761	intergenic	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	.	ENSG00000054793	.	.	upstream	downstream	mismatches(1)	.	.	.
SPC25	DHFR	-/.	-/.	2:168903786	5:80651216	intron	intron	translocation	0	0	0	0	128	low	.	.	.	.	.	ENSG00000152253	ENSG00000228716	.	.	upstream	downstream	duplicates(6),mismatches(1)	.	.	.
ACSL6	RAB11FIP4	-/.	+/.	5:132011045	17:31392208	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000164398	ENSG00000131242	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02629(156849),PARD3(34907)	LINC02721	./.	-/.	10:34074653	11:33819503	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000255133	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45462336	15:45462434	intron	intron	duplication/ITD	0	0	0	0	12	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
DLG2	AC009161.1(206454),AC009110.1(32172)	-/.	./.	11:85484188	16:62564200	intron	intergenic	translocation	0	0	0	279	0	low	.	.	.	.	.	ENSG00000150672	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ROBO2	ACTL10	+/.	+/.	3:76477693	20:33667506	intron	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000185008	ENSG00000182584	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TUBBP11(353354),RAP1BP2(78773)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	3:103984266	21:8258619	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2W	DLG2	-/.	-/.	8:73820108	11:85484188	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000104343	ENSG00000150672	.	.	upstream	upstream	mismatches(2)	.	.	.
AC106795.1	AC025580.2	+/.	+/.	5:177876243	15:45462426	intron	intron	translocation/5'-5'	0	0	0	68	12	low	.	.	.	.	.	ENSG00000170089	ENSG00000259354	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	8:73820108	21:8441654	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000104343	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
AGAP1	CLIP3	+/.	-/.	2:235550706	19:36026173	intron	CDS	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000157985	ENSG00000105270	.	.	upstream	downstream	mismatches(1)	.	.	.
CLSTN1	CLIP3	-/.	-/.	1:9790805	19:36026173	intron	CDS	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000171603	ENSG00000105270	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022826.2	FP671120.4	-/.	+/.	8:73820108	21:8214396	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000258677	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
UBE2W	FP671120.4	-/.	+/.	8:73820108	21:8214396	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000104343	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
AC022826.2	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	8:73820108	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC009161.1(206454),AC009110.1(32172)	FP671120.4	./.	+/.	16:62564200	21:8214396	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01392	LINC01392	-/.	-/.	7:115109456	7:115109469	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000233607	ENSG00000233607	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC009161.1(206454),AC009110.1(32172)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	16:62564200	21:8258619	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353354),RAP1BP2(78773)	FP236383.3	./.	+/.	3:103984266	21:8441654	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TUBBP11(353354),RAP1BP2(78773)	FP671120.4	./.	+/.	3:103984266	21:8214396	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP2	AL139281.2(10113),PTF1A(15098)	-/.	./.	6:142946392	10:23177214	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	upstream	duplicates(2),low_entropy(2)	.	.	.
DKK2	DRAIC	-/.	+/.	4:107127676	15:69743875	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000155011	ENSG00000245750	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
KMT2C	AC025580.2	-/.	+/.	7:152384544	15:45463026	intron	intron	translocation/5'-5'	0	0	0	177	71	low	.	.	.	.	.	ENSG00000055609	ENSG00000259354	.	.	upstream	downstream	mismatches	.	.	.
AC010967.1(152955),AC069157.2(356040)	WDR81	./.	+/.	2:53114407	17:1724796	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000167716	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL606468.1(18423),LINC02608(16596)	AC025580.2	./.	+/.	1:212208682	15:45463026	intergenic	intron	translocation	0	0	0	50	71	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	mismatches	.	.	.
DGKH	RNF43	+/.	-/.	13:42040508	17:58385558	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000102780	ENSG00000108375	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL357513.1(66903),TBC1D32(167116)	AL357513.1(66946),TBC1D32(167073)	./.	./.	6:120912378	6:120912421	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RTBDN	MYBL2	-/-	+/+	19:12829947	20:43683475	CDS	intron	translocation	0	0	0	0	2	low	.	.	|C-myb__C-terminal(100%),Myb-like_DNA-binding_domain(53%)	.	.	ENSG00000132026	ENSG00000101057	.	.	upstream	upstream	mismatches(1)	.	.	.
RGMB-AS1	ASTN2	-/.	-/.	5:98771454	9:116626790	intron	intron	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000246763	ENSG00000148219	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
POU6F2(12330),AC011290.1(40221)	POU6F2(12345),AC011290.1(40206)	./.	./.	7:39505425	7:39505440	intergenic	intergenic	duplication/ITD	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
AC025580.2	MYH9	+/.	-/.	15:45463026	22:36360029	intron	intron	translocation/5'-5'	0	0	0	71	6	low	.	.	.	.	.	ENSG00000259354	ENSG00000100345	.	.	downstream	upstream	mismatches	.	.	.
AC114321.1(205469),AC026403.1(21397)	SLIT1	./.	-/.	5:166360908	10:97179805	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000187122	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IGSF21	SRSF9	+/.	-/.	1:18369039	12:120469337	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000117154	ENSG00000111786	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC025580.2	MYH9	+/.	-/.	15:45463026	22:36360030	intron	intron	translocation/5'-5'	0	0	0	71	6	low	.	.	.	.	.	ENSG00000259354	ENSG00000100345	.	.	downstream	upstream	mismatches	.	.	.
ADAM10	SMG1	-/.	-/.	15:58611645	16:18892389	exon	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000137845	ENSG00000157106	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
SDK1-AS1	KRT18P55	-/.	-/.	7:3291133	17:28307146	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000236708	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
RNF34	FP236383.3	+/.	+/.	12:121407133	21:8444825	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000170633	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CLK2	TLL1	-/.	+/.	1:155273350	4:166096339	5'UTR	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000176444	ENSG00000038295	.	.	downstream	upstream	mismatches(1)	.	.	.
CLK2	RFC3P1(52935),STAC(156961)	-/.	./.	1:155273350	3:36223383	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000176444	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4(7141),FP671120.10(567)	+/.	./.	21:8214882	21:8234787	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SDK1	FBXW5	+/.	-/.	7:3911336	9:136943086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146555	ENSG00000159069	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GSDME	FBXW5	-/.	-/.	7:24728024	9:136943086	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000105928	ENSG00000159069	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL139020.1(12710),AL133167.1(58397)	AL139020.1(12723),AL133167.1(58384)	./.	./.	14:95770366	14:95770379	intergenic	intergenic	duplication/ITD	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GRM8(1068),PRELID3BP10(41459)	AC012060.1(92676),LINC02248(36443)	./.	./.	7:127254161	15:26358594	intergenic	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC016820.1(173235),ZMIZ1-AS1(73071)	PDXDC2P	./.	-/.	10:78870257	16:70012585	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000255185	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4490),AP001994.1(77191)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744113	14:78082961	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
FBXW5	AL161935.2(50921),MACORIS(13564)	-/.	./.	9:136943086	10:31679520	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TAB2(11979),ZC3H12D(23203)	TAB2(11988),ZC3H12D(23194)	./.	./.	6:149423592	6:149423601	intergenic	intergenic	duplication/ITD	0	0	0	86	86	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
KLHL29	FBXW5	+/.	-/.	2:23548872	9:136943086	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119771	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
KCNAB2	AC022826.2	+/.	-/.	1:6071909	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000258677	.	.	downstream	upstream	mismatches(1)	.	.	.
OSBPL10	FBXW5	-/.	-/.	3:31803230	9:136943086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144645	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNU1-154P(711),AC239860.3(27394)	RNU1-154P(726),AC239860.3(27379)	./.	./.	1:145432404	1:145432419	intergenic	intergenic	duplication/ITD	0	0	0	60	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(13),low_entropy(4)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626670	X:18626679	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC079193.1(4365),ZDHHC2(1229)	FBXW5	./.	-/.	8:17155253	9:136943086	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000159069	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GLI3	FP671120.4	-/.	+/.	7:42206674	21:8214783	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000106571	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC02150	FBXW5	-/.	-/.	5:16393213	9:136943086	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248150	ENSG00000159069	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02141(117704),AC009081.2(174801)	HDAC6	./.	+/.	16:60171677	X:48801481	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000094631	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262473	6:42262481	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(2)	.	.	.
HBB	PANX2	-/.	+/.	11:5225537	22:50174364	3'UTR	intron	translocation	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000073150	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FBXW5	CDH8	-/.	-/.	9:136943086	16:61831040	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	ENSG00000150394	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GPR55	LINC02745	-/.	-/.	2:230948894	11:42090408	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135898	ENSG00000255300	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023154.1	PLA2G3	+/.	-/.	4:52953150	22:31138371	intron	CDS	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000248115	ENSG00000100078	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
AP003390.1(4363),AP001994.1(77318)	AP003390.1(4376),AP001994.1(77305)	./.	./.	11:119743986	11:119743999	intergenic	intergenic	duplication/ITD	0	0	0	1583	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),merge_adjacent	.	.	.
AC078980.1	AC010834.2	+/.	+/.	3:109700822	8:93742499	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000253848	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNA1E	FBXW5	+/.	-/.	1:181644875	9:136943086	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000198216	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ADCY1	FEM1AP2	+/.	-/.	7:45682482	18:14393255	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164742	ENSG00000265296	.	.	upstream	downstream	mismatches(1)	.	.	.
AC105252.1(292286),AC079380.1(3752)	FBXW5	./.	-/.	4:133867494	9:136943086	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23080),AC108865.1(141167)	CRTAC1	./.	-/.	4:186749802	10:98026059	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000095713	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02345	FAM182B	+/.	-/.	15:38015664	20:25766770	intron	intron	translocation/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000259225	ENSG00000175170	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH9	LINC01951(202812),ARL2BPP6(92406)	+/+	./-	17:11784443	5:175198325	CDS	intergenic	translocation	0	0	0	0	36	low	.	.	AAA+_lid_domain(5%),Dynein_heavy_chain_AAA_lid_domain(35%),Dynein_heavy_chain__N-terminal_region_1(100%),Dynein_heavy_chain__N-terminal_region_2(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),P-loop_containing_dynein_motor_region(100%)|	.	.	ENSG00000007174	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
CNTNAP5	STS	+/.	+/.	2:124817985	X:7318443	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000155052	ENSG00000101846	.	.	upstream	downstream	mismatches(1)	.	.	.
AL603650.1	FP236383.3	+/.	+/.	9:134868371	21:8397826	exon	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000232355	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009117.2	FP236383.3	-/.	+/.	16:82500439	21:8394736	intron	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000261285	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CAMK1D	FP671120.4	+/.	+/.	10:12746140	21:8216627	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000183049	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	11:47214902	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NUDT14(1075),BRF1(26888)	FP236383.11(1894),FP236383.6(562)	./.	./.	14:105182398	21:8464692	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GPS1	FP236383.3	+/.	+/.	17:82055709	21:8394736	exon	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000169727	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01219	FP671120.4	+/.	+/.	11:1991349	21:8214791	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000232987	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
GPS1	FP236383.3	+/.	+/.	17:82055709	21:8438949	exon	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000169727	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SHISAL2B	CTPS2	+/.	-/.	5:64716445	X:16644866	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000145642	ENSG00000047230	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
BOP1	FP236383.3	-/.	+/.	8:144273174	21:8435132	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000261236	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47214902	21:8394736	intron	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RNA5SP427(5143),AC007342.2(19305)	FP671120.4	./.	+/.	16:53342714	21:8214781	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
DDB2	FP671120.4	+/.	+/.	11:47214902	21:8211701	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
WWTR1	WWTR1	-/.	-/.	3:149656750	3:149656792	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000018408	ENSG00000018408	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC021355.1(212418),GFRA2(168494)	AC021355.1(212431),GFRA2(168481)	./.	./.	8:21521904	8:21521917	intergenic	intergenic	duplication/ITD	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
AL139042.1	5_8S_rRNA(2079),FP236383.3(121631)	-/.	./.	6:88378478	21:8259012	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000234426	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
SEMA3A	ALG1L9P	-/.	-/.	7:84007637	11:71745056	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075213	ENSG00000248671	.	.	downstream	downstream	mismatches(1)	.	.	.
NDUFAF4(8228),RN7SL509P(8580)	XACT(90620),AL953862.1(239079)	./.	./.	6:96906119	X:114149909	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
AL161910.1	ERI3	-/-	-/-	9:89603046	1:44320094	exon	intron	translocation	0	0	0	0	67	low	.	.	|Exonuclease(90%)	.	.	ENSG00000285907	ENSG00000117419	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	NMRK2(8878),DAPK3(7159)	./.	./.	15:26358594	19:3951294	intergenic	intergenic	translocation	0	0	0	71	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
RPL35AP21(49946),CEMIP2(43487)	RPL35AP21(49959),CEMIP2(43474)	./.	./.	9:71639879	9:71639892	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396543	8:22396554	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
OR4A6P(487048),TRIM48(49291)	LINC01841(5040),ADGRE5(5265)	./.	./.	11:55212864	19:14375236	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
ARHGEF26-AS1	AC011474.1	-/-	-/-	3:154121333	19:29438841	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	ENSG00000264515	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC016694.1(51877),RBMY2WP(38115)	AC016694.1(51925),RBMY2WP(38067)	./.	./.	Y:22724736	Y:22724784	intergenic	intergenic	duplication/ITD	0	0	0	78	78	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
HAS2-AS1	ANP32B	+/.	+/.	8:121910313	9:97983496	intron	5'UTR	translocation/3'-3'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000248690	ENSG00000136938	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093878.1(35588),AC097535.2(126280)	NF1	./.	+/.	4:33274258	17:31130977	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000196712	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01592	AC023632.3(700),AC023632.4(3452)	-/.	./.	8:68940496	8:94590959	intron	intergenic	inversion	0	0	0	30	22	low	.	.	.	.	.	ENSG00000253658	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GRM4	TSPEAR(11743),UBE2G2(45265)	-/.	./.	6:34102914	21:44723315	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000124493	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC084759.3	AC023632.3(700),AC023632.4(3452)	+/+	./+	15:53910829	8:94590959	exon	intergenic	translocation	0	0	0	7	22	low	.	.	.	.	.	ENSG00000280362	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479902	14:106419138	intron	intergenic	translocation	0	0	0	1761	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683475	15:81683484	intron	intron	duplication/5'-5'	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
ARHGEF26-AS1	AL162231.5	-/-	+/-	3:154121333	9:34768913	exon	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	ENSG00000288583	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL049828.1	CDK12	+/.	+/.	14:40229599	17:39481633	intron	intron	translocation	0	0	0	7	34	low	.	.	.	.	.	ENSG00000258526	ENSG00000167258	.	.	downstream	upstream	mismatches	.	.	.
AC023632.3(700),AC023632.4(3452)	AC084759.3(20),AC084759.2(31977)	./.	./.	8:94590959	15:53914732	intergenic	intergenic	translocation	0	0	0	22	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC020741.1	AC023632.3(700),AC023632.4(3452)	-/-	./+	4:61428174	8:94590959	exon	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000205682	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009779.2	AC118650.1(347044),HSPA8P13(173153)	+/+	./+	12:55730366	8:46375936	exon	intergenic	translocation	0	0	0	1	3	low	.	.	.	.	.	ENSG00000258056	.	.	.	downstream	upstream	mismatches(1)	.	.	.
OR5D3P(24082),OR5D17P(1274)	MGAT4C	./.	-/.	11:55753703	12:86025258	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000182050	.	.	upstream	upstream	mismatches(1)	.	.	.
RUFY4(18120),CXCR2(16588)	AL391095.1	./.	-/.	2:218108701	20:38407639	intergenic	intron	translocation	0	0	0	193	1	low	.	.	.	.	.	.	ENSG00000224635	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	AP003390.1(4504),AP001994.1(77177)	-/.	./.	6:42262463	11:119744127	intron	intergenic	translocation	0	0	0	2363	3002	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	duplicates	.	.	.
AC092155.1	RUFY4(18120),CXCR2(16588)	-/.	./.	2:62630506	2:218108701	intron	intergenic	duplication	0	0	0	0	193	low	.	.	.	.	.	ENSG00000226622	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PAXBP1(57),C21orf62-AS1(251)	PAXBP1(78),C21orf62-AS1(230)	./.	./.	21:32771849	21:32771870	intergenic	intergenic	duplication/ITD	0	0	0	445	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
DYNLL1	FP236383.3	+/.	+/.	12:120496222	21:8397830	5'UTR	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000088986	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	IRS2	./.	-/.	2:218108703	13:109781230	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000185950	.	.	downstream	upstream	homopolymer(1)	.	.	.
ENG(10496),AK1(1332)	FBXW5	./.	-/.	9:127865154	9:136943086	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000159069	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CDK14	AC023632.3(700),AC023632.4(3452)	+/.	./.	7:90766754	8:94590959	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000058091	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023632.3(700),AC023632.4(3452)	FIBIN(9775),BBOX1(33863)	./.	./.	8:94590959	11:27006862	intergenic	intergenic	translocation	0	0	0	22	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC002072.1	AC002072.1	+/.	+/.	X:113133818	X:113133833	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000286072	ENSG00000286072	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LMO2(104914),AC090469.1(52977)	SIK3	./.	-/.	11:33996990	11:117095543	intergenic	intron	duplication	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000160584	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45462092	15:45462165	intron	intron	duplication/ITD	0	0	0	2	26	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
ESR1	ESR1	+/.	+/.	6:151669146	6:151669188	intron	intron	duplication/ITD	0	0	0	55	55	low	.	.	.	.	.	ENSG00000091831	ENSG00000091831	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
ARHGAP28	BX284656.1(14693),AL008720.1(96981)	+/.	./.	18:6861597	22:48157922	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000088756	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ESR1	ESR1	+/.	+/.	6:151669146	6:151669184	intron	intron	duplication/ITD	0	0	0	55	55	low	.	.	.	.	.	ENSG00000091831	ENSG00000091831	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
MCM2	AL138820.1(60348),LINC00423(28905)	+/+	./+	3:127620805	13:32848526	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	MCM_AAA-lid_domain(87%),MCM_N-terminal_domain(100%),MCM_OB_domain(100%),MCM_P-loop_domain(100%),Mini-chromosome_maintenance_protein_2(100%)|	.	.	ENSG00000073111	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MCM2	TMEM271	+/+	-/-	3:127620806	4:574605	CDS	3'UTR	translocation	0	0	0	0	1	low	.	.	MCM_AAA-lid_domain(87%),MCM_N-terminal_domain(100%),MCM_OB_domain(100%),MCM_P-loop_domain(100%),Mini-chromosome_maintenance_protein_2(100%)|	.	.	ENSG00000073111	ENSG00000273238	.	.	downstream	downstream	mismatches(1)	.	.	.
KIF18BP1(8106),AC106785.1(68982)	FP671120.4	./.	+/.	16:35653286	21:8218870	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AL158210.1	FP236383.3	+/.	+/.	10:6788934	21:8441947	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000285743	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL392086.2	FP236383.3	+/.	+/.	10:6788934	21:8441947	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000285988	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL13A	ELF2	+/+	-/+	19:49489881	4:139103597	CDS	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	Ribosomal_protein_L13(10%)|	.	.	ENSG00000142541	ENSG00000109381	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00707	FP236383.3	+/.	+/.	10:6788934	21:8441947	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000238266	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RNF212B	AC113137.1(312556),CDH20(118148)	+/.	./.	14:23198768	18:61215282	intron	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000215277	.	.	.	downstream	downstream	mismatches(1)	.	.	.
UGT1A8	AC016642.1	+/.	-/.	2:233640220	5:58801228	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000242366	ENSG00000248475	.	.	upstream	downstream	mismatches(1)	.	.	.
ARAP2	FP236383.3	-/.	+/.	4:36080800	21:8441655	intron	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	ENSG00000047365	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL392086.1	FP236383.3	+/.	+/.	10:6788934	21:8441947	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000285845	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
IQCH	MCF2	+/.	-/.	15:67310422	X:139639534	intron	intron	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000103599	ENSG00000101977	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022384.1	LETM1	+/.	-/.	3:10249514	4:1841520	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC112242.1(11775),AC097375.2(1894)	FP236383.3	./.	+/.	4:151903038	21:8397817	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL158210.1	FP671120.4	+/.	+/.	10:6788934	21:8214689	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000285743	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	ZNF699(12029),ZNF559(1905)	+/.	./.	11:47233105	19:9321867	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(1)	.	.	.
FOXL2NB(31355),PRR23A(18617)	ENPP7P8	./.	+/.	3:138985345	11:71745056	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000255319	.	.	downstream	downstream	mismatches(1)	.	.	.
ACAD9	NUFIP1P1(153072),AL450336.1(462261)	+/.	./.	3:128903752	6:66247981	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000177646	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LUC7L3	FP671120.4	+/.	+/.	17:50719772	21:8214689	CDS	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000108848	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AL392086.1	5_8S_rRNA(1979),FP236383.3(121731)	+/.	./.	10:6788934	21:8258912	intron	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000285845	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214800	21:8397834	intron	intron	duplication	0	0	0	5263	5614	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(4),homopolymer(4)	.	.	.
FP671120.6	LAMA4	-/-	-/+	21:8210561	6:112210017	exon	intron	translocation/5'-5'	0	1	0	2	1	low	.	.	.	.	.	ENSG00000280800	ENSG00000112769	.	.	upstream	upstream	min_support	.	.	.
DACT2(25892),AL138918.1(29028)	AC022748.2	./.	+/.	6:168345669	15:78672957	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261303	.	.	upstream	downstream	duplicates(4),mismatches(5)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683475	15:81683484	intron	intron	duplication/3'-3'	0	0	0	78	78	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
DACT2(25892),AL138918.1(29028)	GTF2IRD1P1	./.	-/.	6:168345669	7:66824572	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000230583	.	.	upstream	downstream	duplicates(4),mismatches(5)	.	.	.
CRYL1(109),AL590096.1(38726)	CIAO3	./.	-/.	13:20525982	16:737098	intergenic	exon	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000103245	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214793	21:8442081	intron	intron	duplication	0	0	0	5263	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092845.1(7539),NANOGNBP1(93)	NPAS3	./.	+/.	2:100660106	14:33799874	intergenic	CDS	translocation	0	0	0	0	102	low	.	.	.	.	.	.	ENSG00000151322	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
GSE1	LSM14B	+/.	+/.	16:85176724	20:62131771	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000131149	ENSG00000149657	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025183.2(16914),IRX4(609)	LIN52(32940),VSX2(5274)	./.	./.	5:1876804	14:74234175	intergenic	intergenic	translocation	0	0	0	8	36	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(3)	.	.	.
LIN52(32940),VSX2(5274)	BRD1(231),Z98885.2(4706)	./.	./.	14:74234175	22:49827743	intergenic	intergenic	translocation	0	0	0	36	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(3)	.	.	.
AC020741.1	AC093627.22	-/-	-/+	4:61428174	7:117610	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000205682	ENSG00000287883	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117446	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(5),low_entropy(4)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117447	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
IGHVIII-38-1(821),IGHV4-39(2591)	IGHVIII-38-1(916),IGHV4-39(2496)	./.	./.	14:106419120	14:106419215	intergenic	intergenic	duplication/ITD	0	0	0	162	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(12),low_entropy(7)	.	.	.
AP003390.1(4506),AP001994.1(77175)	FXNP1(22675),NRXN3(87420)	./.	./.	11:119744129	14:78082953	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117419	10:113117452	intron	intron	duplication/ITD	0	0	0	273	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(3)	.	.	.
AC093765.3	5_8S_rRNA(2087),FP236383.3(121623)	-/.	./.	4:116876481	21:8259020	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000287290	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117439	intron	intron	duplication/ITD	0	0	0	307	307	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117458	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	OCIAD2(9623),RNU6-158P(16195)	./.	./.	3:95431526	4:48916560	intergenic	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022826.2	SMG1	-/.	-/.	8:73820122	16:18892387	intron	intron	translocation	0	0	0	164	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000157106	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117421	10:113117454	intron	intron	duplication/ITD	0	0	0	129	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC010451.1	AC093627.22	-/.	-/.	5:4990796	7:117610	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000250481	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	TENM1	+/.	-/.	21:8214795	X:124846213	intron	intron	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000009694	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01020	AC093627.22	+/.	-/.	5:4990796	7:117610	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000215231	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
AC090017.1(164865),DUX4L52(202265)	METTL1P1(345734),RPP40P1(50412)	./.	./.	12:61397802	X:25540941	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093627.22	NELL1	-/.	+/.	7:117610	11:20857320	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000165973	.	.	upstream	downstream	mismatches(1)	.	.	.
RASGEF1C	AL359508.1(15426),MGMT(71011)	-/.	./.	5:180116373	10:129396179	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000146090	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NRIP3	NELL1	-/-	+/-	11:9003964	11:20857320	5'UTR	intron	duplication/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000165973	.	.	upstream	downstream	mismatches(1)	.	.	.
AC068722.1(19665),AC068714.1(148459)	AP001599.1	./.	+/.	15:45950734	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092506.1(601475),AL591888.1(170253)	5_8S_rRNA(1688),FP236383.3(122022)	./.	./.	1:104828153	21:8258621	intergenic	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	ALG13	./.	+/.	2:240393940	X:111681867	intergenic	intron	translocation	0	0	0	357	10	low	.	.	.	.	.	.	ENSG00000101901	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NRIP3	LINC01331(79559),ENC1(10871)	-/-	./+	11:9003964	5:74616535	5'UTR	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NRIP3	AC010451.1	-/-	-/-	11:9003964	5:4990796	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000250481	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	3:96617935	21:8214784	5'UTR	intron	translocation/3'-3'	0	0	0	2	5263	low	.	.	.	.	.	ENSG00000269028	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396492	8:22396590	intron	intron	duplication/ITD	0	0	0	31	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
FAT1(23081),AC108865.1(141166)	LINC01500	./.	+/.	4:186749803	14:59014163	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258583	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022335.1	FP236383.3	+/.	+/.	12:21146487	21:8401256	intron	intron	translocation	0	0	0	7	15	low	.	.	.	.	.	ENSG00000257062	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SGCZ	SNX1	-/.	+/.	8:14216767	15:64095912	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185053	ENSG00000028528	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	CLCN7	./.	-/.	15:26358594	16:1471970	intergenic	intron	translocation	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000103249	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
DUX4L10(1689),DUX4L11(354)	DUX4L10(1781),DUX4L11(262)	./.	./.	10:133746287	10:133746379	intergenic	intergenic	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RGS17(21613),RNA5SP224(6325)	AC093627.22	./.	-/.	6:153152895	7:117610	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	RGS17(21611),RNA5SP224(6327)	./.	./.	4:186749803	6:153152893	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CAMK2A	FAM53B	-/.	-/.	5:150268435	10:124643380	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000070808	ENSG00000189319	.	.	downstream	downstream	mismatches(1)	.	.	.
CDC27P1(3882),AC097532.1(18871)	CFAP97D2(9079),CDC16(2724)	./.	./.	2:132266924	13:114232163	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4503),AP001994.1(77178)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744126	14:78082961	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AL512634.1(10299),CHCHD2P9(182691)	AP001021.3	./.	+/.	9:79208613	18:5979009	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000266846	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AGRN	AL121895.1	+/.	-/.	1:1041820	20:36154970	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000232406	.	.	downstream	upstream	mismatches(1)	.	.	.
MSH3	Metazoa_SRP(29366),PAX2(39228)	+/.	./.	5:80854005	10:100696375	intron	intergenic	translocation	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NRIP3	LINC02613	-/-	-/-	11:9003964	2:38515935	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000231367	.	.	upstream	downstream	mismatches(1)	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785690	6:42262463	intron	intron	translocation	0	0	0	496	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP001823.1(3432),ELMOD1(756)	./.	./.	3:137274341	11:107590335	intergenic	intergenic	translocation	0	0	0	71	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
AC093627.22	RNU4-83P(49966),RPS26P6(13945)	-/.	./.	7:117610	8:100881826	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	upstream	mismatches(1)	.	.	.
B3GALNT1	AC093627.22	-/.	-/.	3:161095877	7:117610	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169255	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
ASTN2	BCL2(412),KDSR(7186)	-/-	./-	9:117414625	18:63320540	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148219	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MLIP	AP005203.1	+/.	-/.	6:54109681	18:4992677	intron	intron	translocation/5'-5'	0	0	0	4	5	low	.	.	.	.	.	ENSG00000146147	ENSG00000266268	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC002463.1	FP671120.4	+/.	+/.	7:112751479	21:8217333	intron	intron	translocation/3'-3'	0	0	0	39	4	low	.	.	.	.	.	ENSG00000223646	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
GALNT9	SYN3	-/.	-/.	12:132287241	22:32882072	intron	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000182870	ENSG00000185666	.	.	upstream	upstream	mismatches(1)	.	.	.
AL449106.1	AC016304.1(54228),TMCO5A(376608)	-/-	./-	1:178725055	15:37545331	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
MLIP	AL390778.2(33289),C9orf62(57252)	+/.	./.	6:54109681	9:135285997	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000146147	.	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
FP236383.3	BRD1(231),Z98885.2(4706)	+/.	./.	21:8397826	22:49827743	intron	intergenic	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
Y_RNA(150914),AL713998.1(101938)	LMX1B	./.	+/.	6:67776378	9:126671248	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000136944	.	.	downstream	downstream	mismatches(1)	.	.	.
AC069306.1(50230),LINC01612(33773)	LMX1B	./.	+/.	4:170192762	9:126671248	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
CTSV(28036),TCEA1P1(70)	AC126696.1(18359),SLC7A5(5188)	./.	./.	9:97067679	16:87824835	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CNTNAP2	LMX1B	+/.	+/.	7:147532165	9:126671248	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000174469	ENSG00000136944	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	RPL14P5(32628),CRLF2(144820)	+/.	./.	21:8442064	X:1042729	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
AC005699.1	LMX1B	+/.	+/.	4:11737951	9:126671248	intron	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000249631	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
ENAH	RPS24P8(33048),TMEM158(31243)	-/.	./.	1:225578655	3:45193223	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000154380	.	.	.	downstream	upstream	duplicates(5),mismatches(4)	.	.	.
DTNBP1(49316),ARPC3P5(222408)	MAPK6P1(19020),AC103778.1(153377)	./.	./.	6:15712374	8:53559320	intergenic	intergenic	translocation	0	0	0	10	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SHISA6	SHISA8	+/.	-/.	17:11337251	22:41913927	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000188803	ENSG00000234965	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM110C(109643),AC079779.1(41056)	LMX1B	./.	+/.	2:156513	9:126671248	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	AC027031.2(80998),OXR1(5576)	-/.	./.	5:80650490	8:106353900	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PEAK1	SNX29	-/.	+/.	15:77108105	16:12282234	3'UTR	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000173517	ENSG00000048471	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	LINC01971(8010),ACTG1(20391)	+/.	./.	11:47233105	17:81489580	intron	intergenic	translocation	0	0	0	341	1	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC073387.2(112236),EIF3IP1(82625)	LMX1B	./.	+/.	7:109876593	9:126671248	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
CCDC192	LMX1B	+/.	+/.	5:127837021	9:126671248	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000230561	ENSG00000136944	.	.	downstream	downstream	mismatches(1)	.	.	.
AMY2B(3342),AMY2A(33935)	SYNE3	./.	-/.	1:103582876	14:95466310	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000176438	.	.	upstream	upstream	mismatches(2)	.	.	.
AC109583.4	ARHGEF7(5084),TEX29(5363)	-/.	./.	3:46755085	13:111310821	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000284672	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LMX1B	SEMA6D	+/.	+/.	9:126671248	15:47230626	intron	intron	translocation/5'-5'	0	0	0	21	0	low	.	.	.	.	.	ENSG00000136944	ENSG00000137872	.	.	downstream	downstream	mismatches(1)	.	.	.
UBE2W	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	8:73820108	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	upstream	mismatches(2)	.	.	.
AC006499.8(7830),RAF1P1(8861)	DDX11	./.	+/.	4:10246065	12:31095898	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000013573	.	.	upstream	upstream	mismatches(1)	.	.	.
POLR2DP2(11033),SNORA25B(66201)	LMX1B	./.	+/.	7:115515114	9:126671248	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000136944	.	.	upstream	downstream	mismatches(1)	.	.	.
LMX1B	CASC16	+/.	-/.	9:126671248	16:52617892	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000136944	ENSG00000249231	.	.	downstream	downstream	mismatches(1)	.	.	.
EPDR1	LMX1B	+/.	+/.	7:37710990	9:126671248	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000086289	ENSG00000136944	.	.	downstream	downstream	mismatches(1)	.	.	.
RN7SL104P(43680),AC010145.1(2388)	WDR81	./.	+/.	2:15994661	17:1724796	intergenic	5'UTR	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000167716	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ESR1	AC013489.2(9289),LINC01586(7715)	+/.	./.	6:151694868	15:88577851	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000091831	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LMX1B	ATP5F1CP1(73347),CDKN3(331507)	+/.	./.	9:126671248	14:54065342	intron	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000136944	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4494),AP001994.1(77187)	GPC3	./.	-/.	11:119744117	X:133661640	intergenic	intron	translocation	0	0	0	3583	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
LMX1B	LINC02141	+/.	+/.	9:126671248	16:59933326	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000136944	ENSG00000261807	.	.	downstream	upstream	mismatches(1)	.	.	.
MAOB	MAOB	-/.	-/.	X:43857121	X:43857130	intron	intron	duplication/ITD	0	0	0	11	9	low	.	.	.	.	.	ENSG00000069535	ENSG00000069535	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
KIAA2012-AS1	TIAM1	-/.	-/.	2:202083777	21:31286127	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222035	ENSG00000156299	.	.	downstream	upstream	mismatches(1)	.	.	.
AL513348.1(82080),RNU6-983P(53597)	SEMA3A	./.	-/.	1:194434506	7:84007637	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000075213	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNQ5	ADAMTS20	+/.	-/.	6:72695401	12:43427399	intron	CDS	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000185760	ENSG00000173157	.	.	downstream	downstream	mismatches(1)	.	.	.
ROCK2	SPECC1L	-/.	+/.	2:11234942	22:24299648	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134318	ENSG00000100014	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF608(53571),AC113398.1(6450)	RNA5SP291(191926),AL590381.1(118252)	./.	./.	5:124802378	9:103881503	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PRICKLE2	FP236383.3	-/.	+/.	3:64188277	21:8442064	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000163637	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
CCNB2	NPLOC4	+/.	-/.	15:59122737	17:81626505	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157456	ENSG00000182446	.	.	downstream	upstream	mismatches(1)	.	.	.
RNA5SP291(191926),AL590381.1(118252)	ENPP7P8	./.	+/.	9:103881503	11:71745056	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000255319	.	.	upstream	downstream	mismatches(1)	.	.	.
KRT8P25(62303),APOOP2(207812)	AC093297.2(51187),AC114954.1(155420)	./.	./.	3:87387026	5:44879779	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AMD1P1(55145),AL590032.1(140926)	MYT1	./.	+/.	10:20406245	20:64104991	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000196132	.	.	upstream	upstream	mismatches(1)	.	.	.
STARD3	RNA5SP291(191926),AL590381.1(118252)	+/+	./+	17:39658997	9:103881503	exon	intergenic	translocation	0	0	0	0	0	low	.	.	Cholesterol-capturing_domain(100%)|	.	.	ENSG00000131748	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NFE2L1	PKN2	+/+	+/+	17:48059602	1:88768909	CDS	intron	translocation	0	0	0	3	0	low	.	.	bZIP_Maf_transcription_factor(100%)|Hr1_repeat(51%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000082641	ENSG00000065243	.	.	downstream	upstream	mismatches(1)	.	.	.
LAMP3(12961),MCF2L2(1243)	DLGAP2	./.	+/.	3:183176800	8:1553476	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000198010	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF608(53571),AC113398.1(6450)	SEMA3A	./.	-/.	5:124802378	7:84007637	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000075213	.	.	downstream	downstream	mismatches(1)	.	.	.
FOXL2NB(31355),PRR23A(18617)	ZNF608(53571),AC113398.1(6450)	./.	./.	3:138985345	5:124802378	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HIPK3(18996),KIAA1549L(89)	FP671120.3(1959),FP671120.7(2484)	./.	./.	11:33376019	21:8252108	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RN7SL478P(17939),LMTK2(90301)	AC008035.1	./.	+/.	7:98016561	12:46639334	intergenic	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	.	ENSG00000272369	.	.	upstream	upstream	duplicates(5),mismatches(2)	.	.	.
BNC2	BNC2	-/-	-/-	9:16412701	9:16412763	3'UTR	3'UTR	duplication/ITD	0	0	0	22	22	low	.	.	Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000173068	ENSG00000173068	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
KDM4C	RPL21P119(75752),LINC02177(122955)	+/.	./.	9:7086288	16:9232633	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107077	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FOXL2NB(31355),PRR23A(18617)	ALG1L9P	./.	-/.	3:138985345	11:71745056	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000248671	.	.	downstream	downstream	mismatches(1)	.	.	.
RPS24P8(33048),TMEM158(31243)	AC022826.2	./.	-/.	3:45193223	8:73820121	intergenic	intron	translocation	0	0	0	0	164	low	.	.	.	.	.	.	ENSG00000258677	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
AC010746.2(61353),NPM1P46(5608)	SNX16	./.	-/.	2:197374093	8:81842469	intergenic	intron	translocation	0	0	0	12	76	low	.	.	.	.	.	.	ENSG00000104497	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
B3GNT7(4009),ZBTB8OSP2(28750)	FOXL2NB(31355),PRR23A(18617)	./.	./.	2:231405173	3:138985345	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FOXL2NB(31355),PRR23A(18617)	RPL11P5(15458),AC125616.1(18824)	./.	./.	3:138985345	12:120610006	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IQCH-AS1	FP236383.3	-/.	+/.	15:67310424	21:8433768	intron	intron	translocation	0	0	0	40	0	low	.	.	.	.	.	ENSG00000259673	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009511.3(8795),AC008011.1(102346)	AL158800.1(22549),LINC02325(186744)	./.	./.	12:27833177	14:97240327	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
G6PC2	G6PC2	+/.	+/.	2:168903615	2:168903627	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000152254	ENSG00000152254	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01484	TNKS	-/.	+/.	5:173742753	8:9613010	intron	intron	translocation/5'-5'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000253686	ENSG00000173273	.	.	upstream	downstream	mismatches(1)	.	.	.
STARD3	FOXL2NB(31355),PRR23A(18617)	+/+	./-	17:39658997	3:138985345	exon	intergenic	translocation	0	0	0	0	9	low	.	.	Cholesterol-capturing_domain(100%)|	.	.	ENSG00000131748	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL513348.1(82080),RNU6-983P(53597)	CCDC178	./.	-/.	1:194434506	18:32975571	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
TMC1	FP671120.4	+/.	+/.	9:72523161	21:8214794	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000165091	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(4)	.	.	.
LRRC4C	NGB	-/.	-/.	11:41021153	14:77269725	intron	intron	translocation/5'-5'	0	0	0	632	87	low	.	.	.	.	.	ENSG00000148948	ENSG00000165553	.	.	upstream	upstream	low_entropy	.	.	.
ZNF608(53571),AC113398.1(6450)	CCDC178	./.	-/.	5:124802378	18:32975571	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
ALG1L9P	CCDC178	-/.	-/.	11:71745056	18:32975571	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248671	ENSG00000166960	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6-1059P(140592),RNU6-34P(142941)	AC123777.1	./.	-/.	4:96009356	8:12794050	intergenic	intron	translocation	0	0	0	27	1	low	.	.	.	.	.	.	ENSG00000254813	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
CCDC200	FP671120.4	-/.	+/.	17:43251365	21:8217040	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000236383	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PGS1	CCDC178	+/.	-/.	17:78414481	18:32975568	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000087157	ENSG00000166960	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02613	AC093627.22	-/.	-/.	2:38515935	7:117610	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000231367	ENSG00000287883	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02609	NOS1AP	-/.	+/.	1:90815059	1:162228984	intron	intron	deletion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233593	ENSG00000198929	.	.	downstream	upstream	mismatches(1)	.	.	.
PGS1	UBE2L3	+/.	+/.	17:78414483	22:21613409	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000087157	ENSG00000185651	.	.	upstream	downstream	mismatches(1)	.	.	.
CSK(8121),LMAN1L(1397)	ATP9B(2397),NFATC1(15172)	./.	./.	15:74811319	18:79380684	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
SEMA3A	ENPP7P8	-/.	+/.	7:84007637	11:71745056	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000075213	ENSG00000255319	.	.	downstream	downstream	mismatches(1)	.	.	.
SGIP1	SGIP1	+/.	+/.	1:66631663	1:66631726	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000118473	ENSG00000118473	.	.	upstream	downstream	low_entropy(1)	.	.	.
HIVEP2	AL050309.1	-/.	+/.	6:142946392	X:56010865	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000227486	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
B3GNT7(4009),ZBTB8OSP2(28750)	SEMA3A	./.	-/.	2:231405173	7:84007637	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000075213	.	.	downstream	downstream	mismatches(1)	.	.	.
TCEANC2(9305),AL357673.1(10862)	AC105252.1(292284),AC079380.1(3754)	./.	./.	1:54121824	4:133867492	intergenic	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02368(59027),AC061709.2(5095)	LINC02368(59100),AC061709.2(5022)	./.	./.	12:128182130	12:128182203	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
SOX2-OT	AC004852.2(134346),GAPDHP68(290775)	+/.	./.	3:181698858	7:9324203	exon	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000242808	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ARID4B	LINC-PINT	-/.	-/.	1:235327619	7:131031648	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000231721	.	.	upstream	upstream	mismatches(1)	.	.	.
ENDOG	PLA2G3	+/+	-/-	9:128819050	22:31138370	CDS	CDS	translocation	0	0	0	4	8	low	.	.	DNA/RNA_non-specific_endonuclease(27%)|Phospholipase_A2(18%)	.	.	ENSG00000167136	ENSG00000100078	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
FXNP1(22673),NRXN3(87422)	FXNP1(22772),NRXN3(87323)	./.	./.	14:78082951	14:78083050	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
ADARB2	FTO	-/.	+/.	10:1344201	16:53948955	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000185736	ENSG00000140718	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS20	LINC01924	-/.	+/.	12:43427398	18:64248608	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173157	ENSG00000267134	.	.	downstream	upstream	mismatches(1)	.	.	.
MAD1L1	FBLN1	-/.	+/.	7:1874424	22:45588361	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000002822	ENSG00000077942	.	.	upstream	upstream	mismatches(1)	.	.	.
NDUFC1	AL353595.1	-/.	+/.	4:139295700	9:11950851	intron	intron	translocation/5'-5'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000285784	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2W	GDA	-/.	+/.	8:73820102	9:72149977	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000119125	.	.	upstream	upstream	duplicates(5)	.	.	.
AC008269.1	UBE2W	+/.	-/.	2:206862123	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	ENSG00000104343	.	.	downstream	upstream	duplicates(5)	.	.	.
AC004840.1	FP236383.3	+/.	+/.	7:2383814	21:8442045	intron	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000230914	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AP001823.1(3442),ELMOD1(746)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590345	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC01060	UBE2W	+/.	-/.	4:188533877	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249378	ENSG00000104343	.	.	downstream	upstream	duplicates(5)	.	.	.
PRB2(4011),AC007450.3(2110)	SH3KBP1	./.	-/.	12:11505052	X:19564553	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000147010	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(18845)	FP671120.4	./.	+/.	14:16038627	21:8217040	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CRNDE	SH3KBP1	-/.	-/.	16:54849632	X:19564553	intron	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000245694	ENSG00000147010	.	.	upstream	upstream	mismatches(1)	.	.	.
PPP2R5A	FP671120.4	+/.	+/.	1:212286030	21:8211701	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000066027	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC027612.2	FP236383.3	-/.	+/.	2:91686309	21:8441971	intron	intron	translocation/5'-5'	0	0	0	0	30	low	.	.	.	.	.	ENSG00000230572	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AC106886.2	FP236383.3	+/.	+/.	16:30749090	21:8440449	intron	intron	translocation/5'-5'	0	0	0	221	0	low	.	.	.	.	.	ENSG00000260899	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
AC106742.1	SH3KBP1	+/.	-/.	16:54849632	X:19564553	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000286357	ENSG00000147010	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4476),AP001994.1(77205)	+/.	./.	10:104396370	11:119744099	intron	intergenic	translocation	0	0	0	558	3711	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	duplicates	.	.	.
AL009177.1	GPC3	+/.	-/.	6:14487262	X:133549609	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286277	ENSG00000147257	.	.	upstream	upstream	mismatches(1)	.	.	.
GS1-24F4.2(2865),RPL23AP96(10737)	KRT18P55	./.	-/.	8:6888141	17:28307146	intergenic	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000265480	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00707	FP671120.4	+/.	+/.	10:6788934	21:8214689	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000238266	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009227.2(84256),RNA5SP107(45331)	A1CF	./.	-/.	2:154545076	10:50848274	intergenic	intron	translocation	0	0	0	0	34	low	.	.	.	.	.	.	ENSG00000148584	.	.	downstream	downstream	mismatches(1)	.	.	.
SYT2	AL009177.1	-/.	+/.	1:202672795	6:14487262	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000143858	ENSG00000286277	.	.	downstream	upstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	ZNF385C(217),DHX58(2708)	./.	./.	8:49417336	17:42098696	intergenic	intergenic	translocation	0	0	0	30	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8209831	21:8442054	intron	intron	inversion/3'-3'	0	0	0	48	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
AL009177.1	SH3KBP1	+/.	-/.	6:14487262	X:19564554	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000286277	ENSG00000147010	.	.	upstream	upstream	mismatches(1)	.	.	.
FRMPD2	SH3KBP1	-/.	-/.	10:48180269	X:19564553	intron	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000170324	ENSG00000147010	.	.	upstream	upstream	mismatches(1)	.	.	.
TSPOAP1-AS1	UNC13A	+/.	-/.	17:58385558	19:17686852	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000265148	ENSG00000130477	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC079385.1	SH3KBP1	-/.	-/.	12:106522084	X:19564553	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000257545	ENSG00000147010	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8212189	21:8442141	intron	intron	deletion/read-through	0	0	0	4	8	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2173),FP236383.3(121537)	+/.	./.	21:8212189	21:8259106	intron	intergenic	deletion/read-through	0	0	0	4	44	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211701	21:8439289	intron	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7(883),5_8S_rRNA(384)	FP236383.3	./.	+/.	21:8256397	21:8442141	intergenic	intron	deletion/read-through	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC6A14	SLC6A14	+/.	+/.	X:116445453	X:116445503	intron	intron	duplication/ITD	0	0	0	19	17	low	.	.	.	.	.	ENSG00000268104	ENSG00000268104	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP671120.7(510),5_8S_rRNA(757)	FP236383.3	./.	+/.	21:8256024	21:8438952	intergenic	intron	deletion/read-through	0	0	0	2	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ASB3	ASB3	-/.	-/.	2:53594552	2:53594567	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000115239	ENSG00000115239	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
KYNU(33029),ARHGAP15(2500)	AC026898.1(1904),SMAD2(103308)	./.	./.	2:143088862	18:47705649	intergenic	intergenic	translocation	0	0	0	9	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211818	21:8438952	intron	intron	deletion/read-through	0	0	0	0	139	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LRP1B	LRP1B	-/.	-/.	2:141096622	2:141096683	intron	intron	duplication/ITD	0	0	0	12	11	low	.	.	.	.	.	ENSG00000168702	ENSG00000168702	.	.	upstream	downstream	low_entropy(1)	.	.	.
C17orf100	C17orf100	+/.	+/.	17:6659790	17:6659833	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000256806	ENSG00000256806	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
GTF2IP20	FP236383.3	-/.	+/.	1:223991979	21:8442055	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000272645	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
C17orf100	ALOX15P1	+/.	+/.	17:6659790	17:6659833	intron	intron	duplication	0	0	0	8	8	low	.	.	.	.	.	ENSG00000256806	ENSG00000274114	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
RPL21P12(17605),GCSHP2(17191)	JPH3	./.	+/.	14:103167013	16:87627104	intergenic	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000154118	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAGI2	LINC02620	-/.	-/.	7:78083376	10:104479899	intron	intron	translocation	0	0	0	22	2216	low	.	.	.	.	.	ENSG00000187391	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
PHKG2	AC006262.2	+/.	-/.	16:30749091	19:46177264	intron	intron	translocation	0	0	0	221	0	low	.	.	.	.	.	ENSG00000156873	ENSG00000269729	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	CR392039.1(942),CR392039.3(8124)	./.	./.	8:17155256	21:8988372	intergenic	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ALOX15P1	ALOX15P1	+/.	+/.	17:6659790	17:6659833	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000274114	ENSG00000274114	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
AC106901.1(79693),AC016903.1(10591)	AC106901.1(79734),AC016903.1(10550)	./.	./.	2:204459485	2:204459526	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
SREBF2-AS1	AC011474.1	-/-	-/-	22:41833576	19:29438842	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	ENSG00000264515	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SLC22A23(39204),AL033523.1(88847)	UBE2W	./.	-/.	6:3496254	8:73820119	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000104343	.	.	downstream	downstream	mismatches(1)	.	.	.
AC106901.1(79693),AC016903.1(10591)	AC106901.1(79729),AC016903.1(10555)	./.	./.	2:204459485	2:204459521	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
PBX3	LINC00189	+/.	+/.	9:125886622	21:29263475	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000167081	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
MFSD1	MAD1L1	+/.	-/.	3:158750097	7:1817390	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000118855	ENSG00000002822	.	.	downstream	downstream	mismatches(1)	.	.	.
STEAP1B	AP003390.1(4496),AP001994.1(77185)	-/.	./.	7:22587137	11:119744119	intron	intergenic	translocation	0	0	0	4	3583	low	.	.	.	.	.	ENSG00000105889	.	.	.	downstream	downstream	mismatches	.	.	.
STEAP1B	AP003390.1(4498),AP001994.1(77183)	-/.	./.	7:22587137	11:119744121	intron	intergenic	translocation	0	0	0	4	3002	low	.	.	.	.	.	ENSG00000105889	.	.	.	downstream	downstream	mismatches	.	.	.
PSMB7	IQCH-AS1	-/.	-/.	9:124390167	15:67310435	intron	intron	translocation/5'-5'	0	0	0	0	40	low	.	.	.	.	.	ENSG00000136930	ENSG00000259673	.	.	upstream	upstream	mismatches(1)	.	.	.
SYT2	SYT2	-/.	-/.	1:202691687	1:202691784	intron	intron	duplication/ITD	0	0	0	1	18	low	.	.	.	.	.	ENSG00000143858	ENSG00000143858	.	.	upstream	downstream	duplicates(4),low_entropy(4)	.	.	.
MYO5B	MYO5B	-/.	-/.	18:50122588	18:50122686	intron	intron	duplication/ITD	0	0	0	0	13	low	.	.	.	.	.	ENSG00000167306	ENSG00000167306	.	.	upstream	downstream	duplicates(7),low_entropy(5)	.	.	.
MUC17(240),TRIM56(26382)	MUC17(291),TRIM56(26331)	./.	./.	7:101059099	7:101059150	intergenic	intergenic	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(5)	.	.	.
AC104042.1(688040),AC061997.1(316218)	AC104042.1(688095),AC061997.1(316163)	./.	./.	11:37385907	11:37385962	intergenic	intergenic	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
B4GALT4-AS1	PRPS1(58576),TSC22D3(2652)	+/.	./.	3:119280652	X:107710569	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000240254	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
CDADC1	CDADC1	+/.	+/.	13:49275727	13:49275795	intron	intron	duplication/ITD	0	0	0	198	198	low	.	.	.	.	.	ENSG00000102543	ENSG00000102543	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
DOCK10(352123),NYAP2(5119)	DOCK10(352138),NYAP2(5104)	./.	./.	2:225394591	2:225394606	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(7),low_entropy(3)	.	.	.
AC104123.1	NDRG3	+/.	-/.	5:96361270	20:36696078	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	ENSG00000101079	.	.	upstream	downstream	mismatches(1)	.	.	.
AC104123.1	AMPD3	+/.	+/.	5:96361270	11:10318105	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	ENSG00000133805	.	.	upstream	upstream	mismatches(1)	.	.	.
TPD52L3(65672),UHRF2(15579)	GNL3L	./.	+/.	9:6397572	X:54578338	intergenic	intron	translocation	0	0	0	3	42	low	.	.	.	.	.	.	ENSG00000130119	.	.	downstream	downstream	mismatches(1)	.	.	.
ERC2	FTLP2(19909),GK(2625)	-/.	./.	3:55815739	X:30650734	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000187672	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GABRA2	KDM4C	-/.	+/.	4:46281969	9:7086288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151834	ENSG00000107077	.	.	upstream	upstream	mismatches(1)	.	.	.
ADGRL3	ABCB1	+/.	-/.	4:61929794	7:87589088	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150471	ENSG00000085563	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021210	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(12),low_entropy(2),merge_adjacent	.	.	.
ABCB1	CHTF18	-/.	+/.	7:87589088	16:795868	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000085563	ENSG00000127586	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	EXOC1	./.	+/.	4:36965705	4:55856087	intergenic	intron	inversion	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000090989	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMC4	ABCB1	-/-	-/+	19:54168416	7:87589088	exon	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167608	ENSG00000085563	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC007370.1(42352),U6(60320)	PDS5A	./.	-/.	4:12991022	4:39875785	intergenic	intron	inversion	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000121892	.	.	downstream	downstream	mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	PBX3	./.	+/.	8:37342743	9:125889829	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000167081	.	.	upstream	downstream	mismatches(1)	.	.	.
AGAP1	XPO6(18),GAPDHP35(27710)	+/.	./.	2:235757229	16:28211983	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157985	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ABCB1	ALOX15(16236),PELP1(11244)	-/.	./.	7:87589088	17:4658530	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000085563	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ABCB1	LINC00587	-/.	+/.	7:87589088	9:102631926	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000085563	ENSG00000204250	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
TET2	TET2	+/.	+/.	4:105163800	4:105163857	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000168769	ENSG00000168769	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL139383.1	FP236383.3	-/.	+/.	13:33517098	21:8441655	intron	intron	translocation/3'-3'	0	0	0	2	546	low	.	.	.	.	.	ENSG00000230490	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC092902.4	CDH8	+/.	-/.	3:125832550	16:61831043	intron	intron	translocation	0	0	0	0	57	low	.	.	.	.	.	ENSG00000284624	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22675),NRXN3(87420)	FXNP1(22684),NRXN3(87411)	./.	./.	14:78082953	14:78082962	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
AL139383.1	FP236383.3	-/.	+/.	13:33517098	21:8397435	intron	intron	translocation/3'-3'	0	0	0	2	543	low	.	.	.	.	.	ENSG00000230490	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP236383.3	./.	+/.	21:8255893	21:8420132	intergenic	intron	inversion	0	0	0	143	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
LIMD1	IGHV2OR16-5(9752),BCAP31P2(12077)	+/.	./.	3:45593628	16:32857908	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CLCN7	AP001599.1	-/.	+/.	16:1471970	21:26914102	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000103249	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL139383.1	5_8S_rRNA(1687),FP236383.3(122023)	-/.	./.	13:33517098	21:8258620	intron	intergenic	translocation	0	0	0	2	543	low	.	.	.	.	.	ENSG00000230490	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAXIP1-AS1(45661),HTR5A-AS1(15670)	SMG1	./.	-/.	7:155051364	16:18892387	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000157106	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC093520.1	SHE	+/+	-/-	16:31403795	1:154469819	exon	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260757	ENSG00000169291	.	.	downstream	downstream	mismatches(1)	.	.	.
CHTF18	EEF2K	+/.	+/.	16:795868	16:22279034	intron	intron	inversion/3'-3'	0	0	0	5	4	low	.	.	.	.	.	ENSG00000127586	ENSG00000103319	.	.	downstream	downstream	mismatches(1)	.	.	.
TLE4	EEF2K	+/.	+/.	9:79572888	16:22279033	intron	intron	translocation/5'-5'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000106829	ENSG00000103319	.	.	downstream	downstream	mismatches(1)	.	.	.
LYPD6	PAQR5	+/.	+/.	2:149421960	15:69399191	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000187123	ENSG00000137819	.	.	downstream	downstream	mismatches(1)	.	.	.
EEF2K	ALOX15(16236),PELP1(11244)	+/.	./.	16:22279034	17:4658530	intron	intergenic	translocation	0	0	0	4	5	low	.	.	.	.	.	ENSG00000103319	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CAMK1G	ASCC3	+/.	-/.	1:209590483	6:100809843	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000008118	ENSG00000112249	.	.	downstream	upstream	mismatches(1)	.	.	.
NPTX1(473),AC120024.2(36899)	IL1RAPL2	./.	+/.	17:80478316	X:105726992	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000189108	.	.	downstream	downstream	mismatches(1)	.	.	.
AC009878.2	LINC01278	-/.	-/.	15:26410794	X:63407436	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000287280	ENSG00000235437	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC4A2	TMEM134(108),AIP(13646)	+/.	./.	7:151061985	11:67469380	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164889	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP001977.1	AP001977.1	+/.	+/.	11:121765660	11:121765669	intron	intron	duplication/ITD	0	0	0	17	15	low	.	.	.	.	.	ENSG00000286044	ENSG00000286044	.	.	upstream	downstream	duplicates(1)	.	.	.
LGI2(57572),SEPSECS(31496)	BEAN1	./.	+/.	4:25088518	16:66489702	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000166546	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
LINC02609	PLS1	-/.	+/.	1:90815058	3:142644949	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000233593	ENSG00000120756	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8401905	21:8442055	intron	intron	inversion/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	AC010542.3	./.	-/.	4:25088518	16:66489702	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000260851	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
SLC2A9	ADNP	-/.	-/.	4:9774829	20:50930467	intron	intron	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	ENSG00000101126	.	.	downstream	downstream	mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	RNGTT	./.	-/.	4:25088518	6:88723466	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000111880	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
NAV1	IPO9-AS1	+/.	-/.	1:201702673	1:201702688	intron	intron	duplication/3'-3'	0	0	0	6	6	low	.	.	.	.	.	ENSG00000134369	ENSG00000231871	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FP236383.3	AP000432.1(41797),AP000432.2(3227)	+/.	./.	21:8397824	21:17702181	intron	intergenic	duplication	0	0	0	1126	2	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
LINC02805	LGI2(57572),SEPSECS(31496)	+/.	./.	1:148184254	4:25088518	intron	intergenic	translocation	0	0	0	0	68	low	.	.	.	.	.	ENSG00000232265	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
FP236383.3	FP236383.3(3811),FP236383.11(3717)	+/.	./.	21:8414078	21:8458603	intron	intergenic	deletion/read-through	0	0	0	48	30	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	duplicates(4)	.	.	.
AP000255.1(48394),TPT1P1(55540)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784801	21:31785031	intergenic	intergenic	duplication	0	0	0	90	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
LGI2(57572),SEPSECS(31496)	AC137735.2(66553),LINC02074(26993)	./.	./.	4:25088518	17:74016459	intergenic	intergenic	translocation	0	0	0	68	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	AC136777.1(15584),FAM87A(29321)	./.	./.	4:25088518	8:346610	intergenic	intergenic	translocation	0	0	0	68	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
CWC22(210065),AC012669.1(255775)	FP236383.3	./.	+/.	2:180217362	21:8444814	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GNG4	LGI2(57572),SEPSECS(31496)	-/.	./.	1:235568120	4:25088518	intron	intergenic	translocation	0	0	0	0	68	low	.	.	.	.	.	ENSG00000168243	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	MAPK6	./.	+/.	4:25088518	15:52067008	intergenic	3'UTR	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000069956	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
CDK14	CEMIP2(21729),ABHD17B(24033)	+/.	./.	7:90751922	9:71838419	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000058091	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF559	FTO	+/+	+/+	19:9324170	16:53704310	5'UTR	intron	translocation	0	0	0	4	0	low	.	.	|FTO_C-terminal_domain(100%),FTO_catalytic_domain(100%)	.	.	ENSG00000188321	ENSG00000140718	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
AC090578.1	AC090578.1	+/.	+/.	8:88881403	8:88881466	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000253553	ENSG00000253553	.	.	upstream	downstream	low_entropy(1)	.	.	.
LGI2(57572),SEPSECS(31496)	AC027779.1	./.	-/.	4:25088518	11:13838409	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000254927	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
RUFY4(18121),CXCR2(16587)	SINHCAF	./.	-/.	2:218108702	12:31326428	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000139146	.	.	downstream	upstream	homopolymer(1)	.	.	.
SIM1	SIM1	-/.	-/.	6:100457988	6:100458071	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000112246	ENSG00000112246	.	.	upstream	downstream	low_entropy(2)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48496),TPT1P1(55438)	./.	./.	2:128340558	21:31784903	intergenic	intergenic	translocation	0	0	0	35	191	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
CDH8(89412),RNU6-21P(61093)	CDH8(89456),RNU6-21P(61049)	./.	./.	16:62126447	16:62126491	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521073	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(3),inconsistently_clipped(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729377	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
CFAP58	AP001458.2	+/.	-/.	10:104396370	11:62653861	intron	intron	translocation/3'-3'	0	0	0	558	32	low	.	.	.	.	.	ENSG00000120051	ENSG00000255432	.	.	upstream	downstream	mismatches	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521061	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(8)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521063	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(8)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521067	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(8)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521071	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(7)	.	.	.
GRIA2(140759),AC093817.2(61897)	AC004946.1(17649),KCND2(28313)	./.	./.	4:157506834	7:120244862	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729380	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
AC073225.1	AL009177.1	+/.	+/.	2:155658596	6:14487262	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000286679	ENSG00000286277	.	.	downstream	upstream	mismatches(1)	.	.	.
CSMD2	GALNT2	-/.	+/.	1:33894230	1:230187481	intron	intron	deletion/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000121904	ENSG00000143641	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18121),CXCR2(16587)	GAB3	./.	-/.	2:218108702	X:154751292	intergenic	intron	translocation	0	0	0	193	2	low	.	.	.	.	.	.	ENSG00000160219	.	.	downstream	downstream	homopolymer(1)	.	.	.
CUBN	FP236383.3	-/.	+/.	10:17060634	21:8441948	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000107611	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CSMD2	AC021218.1(49386),Y_RNA(170393)	-/.	./.	1:33894231	7:156015729	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000121904	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CSMD2	DIP2A(27616),S100B(973)	-/.	./.	1:33894232	21:46597631	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000121904	.	.	.	downstream	upstream	mismatches(1)	.	.	.
OR5D14(14699),OR5L1(168)	GPCPD1	./.	-/.	11:55811199	20:5604633	intergenic	intron	translocation	0	0	0	9	4	low	.	.	.	.	.	.	ENSG00000125772	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C16orf95	CSMD2	-/-	-/-	16:87317152	1:33894232	CDS	intron	translocation	0	0	0	0	2	low	.	.	|CUB_domain(88%),Sushi_repeat_(SCR_repeat)(96%)	.	.	ENSG00000260456	ENSG00000121904	.	.	upstream	downstream	mismatches(1)	.	.	.
NTRK1	AC093627.22	+/.	-/.	1:156849597	7:117609	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000198400	ENSG00000287883	.	.	upstream	upstream	mismatches(1)	.	.	.
HECW1	HECW1	+/.	+/.	7:43336117	7:43336199	intron	intron	duplication/ITD	0	0	0	25	25	low	.	.	.	.	.	ENSG00000002746	ENSG00000002746	.	.	upstream	downstream	low_entropy(3)	.	.	.
AC092506.1(601475),AL591888.1(170253)	FP236383.3	./.	+/.	1:104828153	21:8397436	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02788	AC013565.1	+/.	+/.	1:90839715	15:89059781	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000285532	ENSG00000260123	.	.	upstream	downstream	mismatches(1)	.	.	.
AC077690.1(10581),LMCD1-AS1(150200)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	3:7801063	21:8259024	intergenic	intergenic	translocation	0	0	0	5	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TPRG1(162303),TP63(143782)	UBE2D3	./.	-/.	3:189487607	4:102811283	intergenic	exon	translocation	0	0	0	2	4	low	.	.	.	.	.	.	ENSG00000109332	.	.	downstream	downstream	mismatches(1)	.	.	.
AL591888.1(380314),CDK4P1(21315)	THEMIS	./.	-/.	1:105412679	6:127735531	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172673	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
PRDM16	RUFY4(18122),CXCR2(16586)	+/.	./.	1:3331296	2:218108703	intron	intergenic	translocation	0	0	0	0	193	low	.	.	.	.	.	ENSG00000142611	.	.	.	upstream	downstream	homopolymer(2)	.	.	.
AP003390.1(4503),AP001994.1(77178)	FXNP1(22680),NRXN3(87415)	./.	./.	11:119744126	14:78082958	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
CFAP58	AP003390.1(4504),AP001994.1(77177)	+/.	./.	10:104396370	11:119744127	intron	intergenic	translocation	0	0	0	558	3002	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
NBPF10	AC068473.3	-/.	+/.	1:146160781	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000271425	ENSG00000267287	.	.	downstream	upstream	mismatches(1)	.	.	.
VASN	MGAT4C	+/+	-/+	16:4371850	12:86408348	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168140	ENSG00000182050	.	.	downstream	upstream	mismatches(1)	.	.	.
CPS1(328499),AC012491.1(97328)	HIVEP2	./.	-/.	2:211007606	6:142946392	intergenic	intron	translocation	0	0	0	0	63	low	.	.	.	.	.	.	ENSG00000010818	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC073349.2	NDUFA1(11969),AKAP14(7206)	-/.	./.	7:64836200	X:119888631	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234338	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092757.2	NPLOC4	+/.	-/.	15:59122737	17:81626505	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259732	ENSG00000182446	.	.	downstream	upstream	mismatches(1)	.	.	.
CDKL2	HIVEP2	-/.	-/.	4:75607734	6:142946392	intron	intron	translocation	0	0	0	0	63	low	.	.	.	.	.	ENSG00000138769	ENSG00000010818	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC106795.1	AC106795.1	+/.	+/.	5:177876215	5:177876243	intron	intron	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	ENSG00000170089	ENSG00000170089	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
HIVEP2	CLDN12	-/.	+/.	6:142946392	7:90436923	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000157224	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC41A2	MT-RNR2	-/.	+/.	12:104952399	MT:2225	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136052	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HIVEP2	AC006153.1	-/.	+/.	6:142946392	7:90436923	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000273299	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PSD3	PSD3	-/.	-/.	8:18743956	8:18744000	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000156011	ENSG00000156011	.	.	upstream	downstream	low_entropy(1)	.	.	.
COPA	UBE3C(2773),AC004975.2(9393)	-/.	./.	1:160307248	7:157272143	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000122218	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022743.1(143998),AC083760.1(395637)	EYA2	./.	+/.	18:43643834	20:47029375	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000064655	.	.	upstream	downstream	mismatches(1)	.	.	.
NRXN3	NRXN3	+/.	+/.	14:79047163	14:79257411	intron	intron	duplication	0	0	0	0	16	low	.	.	.	.	.	ENSG00000021645	ENSG00000021645	.	.	upstream	downstream	mismatches(1)	.	.	.
AC125611.4	FP671120.4	-/.	+/.	12:49319361	21:8214398	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000258334	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP2	AL137230.2	-/.	-/.	6:142946392	14:89721831	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000259053	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ITGA2B	FMN2	-/-	+/-	17:44384408	1:240200872	exon	intron	translocation/5'-5'	0	0	0	0	49	low	.	.	.	.	.	ENSG00000005961	ENSG00000155816	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AGRN	IGHD	+/.	-/.	1:1041820	14:105837605	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000211898	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.6	FP236383.3	-/-	+/-	21:8210559	21:8438951	exon	intron	duplication/5'-5'	0	0	0	16	46	low	.	.	.	.	.	ENSG00000280800	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092169.1(104844),RNU6-649P(13349)	AC137695.1(590),AC137695.2(9747)	./.	./.	2:4931928	3:129335664	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
HIVEP2	RNU6-394P(603885),AL049641.1(93324)	-/.	./.	6:142946392	X:67280249	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HIVEP2	NAV2	-/.	+/.	6:142946392	11:19414337	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000166833	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BMP10(48989),GKN3P(862)	DCC	./.	+/.	2:68920386	18:52708726	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000187323	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP2	FP671120.4	-/.	+/.	6:142946392	21:8211706	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR4276(54098),HPGD(12213)	HIVEP2	./.	-/.	4:174477962	6:142946392	intergenic	intron	translocation	0	0	0	0	63	low	.	.	.	.	.	.	ENSG00000010818	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DAB2IP	FP671120.3(3966),FP671120.7(477)	+/.	./.	9:121706011	21:8254115	intron	intergenic	translocation	0	0	0	0	35	low	.	.	.	.	.	ENSG00000136848	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
FP326651.1(1973),Y_RNA(175039)	AP001599.1	./.	+/.	9:65398345	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
HIVEP2	DDX58	-/.	-/.	6:142946392	9:32510982	intron	intron	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000107201	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104009.1	DMD	-/.	-/.	11:22312136	X:32054088	intron	intron	translocation	0	0	0	9	19	low	.	.	.	.	.	ENSG00000254768	ENSG00000198947	.	.	downstream	upstream	low_entropy	.	.	.
HIVEP2	ASIC2	-/.	-/.	6:142946392	17:33276937	intron	intron	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000108684	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
HIVEP2	LINC01900	-/.	+/.	6:142946392	18:22043470	intron	exon	translocation/3'-3'	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000265758	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC020589.1(284340),SEC63P2(237128)	HIVEP2	./.	-/.	4:35250684	6:142946392	intergenic	intron	translocation	0	0	0	0	63	low	.	.	.	.	.	.	ENSG00000010818	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
HIVEP2	MGC4859	-/.	-/.	6:142946392	7:10536557	intron	intron	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000283117	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC008268.1(53436),GPAT2P1(67491)	FP671120.4	./.	+/.	2:95722163	21:8214801	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
HIVEP2	FP671120.7(398),5_8S_rRNA(869)	-/.	./.	6:142946392	21:8255912	intron	intergenic	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HIVEP2	FP236383.3	-/.	+/.	6:142946392	21:8438954	intron	intron	translocation/3'-3'	0	0	0	63	139	low	.	.	.	.	.	ENSG00000010818	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RPL9P15(50534),AC073359.2(99363)	HIVEP2	./.	-/.	3:154727653	6:142946392	intergenic	intron	translocation	0	0	0	0	63	low	.	.	.	.	.	.	ENSG00000010818	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8442064	21:8442081	intron	intron	duplication/ITD	0	0	0	6	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
RYR2	UBOX5	+/.	-/.	1:237603041	20:3129761	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000198626	ENSG00000185019	.	.	upstream	downstream	mismatches(1)	.	.	.
HIVEP2	DDB2	-/.	+/.	6:142946392	11:47233102	intron	intron	translocation	0	0	0	63	341	low	.	.	.	.	.	ENSG00000010818	ENSG00000134574	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	CLCN7	./.	-/.	2:53114408	16:1471974	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000103249	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC087045.3(9425),AC083843.3(6993)	MT-RNR2	./.	+/.	8:134776701	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	AL031600.2	./.	-/.	15:26358594	16:1471970	intergenic	intron	translocation	0	0	0	71	0	low	.	.	.	.	.	.	ENSG00000261430	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ERI3	CLCN7	-/.	-/.	1:44320094	16:1471970	intron	intron	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000103249	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ERI3	AL031600.2	-/.	-/.	1:44320094	16:1471970	intron	intron	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000261430	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
CDH8	FP236383.3	-/.	+/.	16:61831043	21:8392866	intron	intron	translocation/3'-3'	0	0	0	57	43	low	.	.	.	.	.	ENSG00000150394	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL031600.2	AP001599.1	-/.	+/.	16:1471970	21:26914102	intron	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	.	.	.	ENSG00000261430	ENSG00000223563	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC01166	FP671120.4	-/.	+/.	10:132962352	21:8214782	intron	intron	translocation/3'-3'	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000232903	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
SYBU	SYBU	-/.	-/.	8:109668159	8:109668202	intron	intron	duplication/ITD	0	0	0	5	4	low	.	.	.	.	.	ENSG00000147642	ENSG00000147642	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
AC022384.1	FP236383.3	+/.	+/.	3:10249514	21:8442060	CDS	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000272410	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
JAK1	5_8S_rRNA(2090),FP236383.3(121620)	-/.	./.	1:64848252	21:8259023	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000162434	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRPC5(23),DPRXP7(237153)	TRPC5(36),DPRXP7(237140)	./.	./.	X:112082799	X:112082812	intergenic	intergenic	duplication/ITD	0	0	0	6	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
ITGA9-AS1	ITGA9-AS1	-/.	-/.	3:37848931	3:37848988	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000235257	ENSG00000235257	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
FBN3(10837),AC022146.1(12843)	FBN3(10891),AC022146.1(12789)	./.	./.	19:8160429	19:8160483	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
DUX4L20	PGLYRP1	+/+	-/+	10:133684753	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000276164	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008696.2	AC008696.2	+/.	+/.	5:143787220	5:143787275	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000249881	ENSG00000249881	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
LINC01854(94046),PPIAP65(128403)	PTHLH	./.	-/.	2:129367894	12:27970460	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000087494	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ABCC4	ABCC4	-/.	-/.	13:95029214	13:95029229	intron	intron	duplication/ITD	0	0	0	10	8	low	.	.	.	.	.	ENSG00000125257	ENSG00000125257	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
C1orf94	FP236383.3	+/+	+/+	1:34177327	21:8397828	5'UTR	intron	translocation	0	0	0	7	1126	low	.	.	.	.	.	ENSG00000142698	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC009242.1	KLHL29	-/.	+/.	2:23670918	2:23670931	intron	intron	duplication/5'-5'	0	0	0	17	17	low	.	.	.	.	.	ENSG00000283031	ENSG00000119771	.	.	upstream	downstream	duplicates(14),low_entropy(2)	.	.	.
LINC01588	FP236383.3	-/.	+/.	14:49993364	21:8389581	intron	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000214900	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SIL1	KRT8P27(3758),GRPEL2P2(69547)	-/.	./.	5:139105649	X:64628331	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000120725	.	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
C1orf94	FP671120.4	+/+	+/+	1:34177327	21:8214794	5'UTR	intron	translocation	0	0	0	7	5263	low	.	.	.	.	.	ENSG00000142698	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
C1orf94	5_8S_rRNA(2090),FP236383.3(121620)	+/+	./+	1:34177327	21:8259023	5'UTR	intergenic	translocation	0	0	0	7	6	low	.	.	.	.	.	ENSG00000142698	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C1orf94	KIAA2012	+/+	+/-	1:34177327	2:202083776	5'UTR	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000142698	ENSG00000182329	.	.	downstream	downstream	mismatches(1)	.	.	.
C1orf94	MARCHF2	+/+	+/+	1:34177327	19:8423197	5'UTR	intron	translocation	0	0	0	7	0	low	.	.	|RING-variant_domain(100%)	.	.	ENSG00000142698	ENSG00000099785	.	.	downstream	upstream	mismatches(1)	.	.	.
C1orf94	GPR39	+/+	+/-	1:34177327	2:132557876	5'UTR	intron	translocation/5'-5'	0	0	0	7	10	low	.	.	.	.	.	ENSG00000142698	ENSG00000183840	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093875.1(209863),LINC02511(32317)	DLG2	./.	-/.	4:136763602	11:85484188	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	PCDH11X	+/.	+/.	21:8397434	X:92108311	intron	intron	translocation/3'-3'	0	0	0	543	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000102290	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	PCDH11Y	+/.	+/.	21:8397434	Y:5332831	intron	intron	translocation/3'-3'	0	0	0	543	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000099715	.	.	upstream	upstream	mismatches(1)	.	.	.
TPI1	AC133480.1(230309),AC090503.2(156804)	+/+	./-	12:6867198	12:72959153	5'UTR	intergenic	inversion	0	0	0	2	0	low	.	.	.	.	.	ENSG00000111669	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ATG16L1(4014),SAG(8128)	GUSBP6	./.	+/.	2:233299688	7:64102903	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000224458	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1686),FP236383.3(122024)	PCDH11Y	./.	+/.	21:8258619	Y:5332831	intergenic	intron	translocation	0	0	0	543	0	low	.	.	.	.	.	.	ENSG00000099715	.	.	upstream	upstream	mismatches(1)	.	.	.
AL356131.1(332834),MTRNR2L9(183)	MTRNR2L5	./.	+/.	6:61574145	10:55599444	intergenic	5'UTR	translocation	0	0	0	65	8	low	.	.	.	.	.	.	ENSG00000249860	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01060	GCNT1	+/.	+/.	4:188533876	9:76571859	intron	intron	translocation	0	0	0	0	38	low	.	.	.	.	.	ENSG00000249378	ENSG00000187210	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CASC15	DLG2	+/.	-/.	6:22499158	11:85484188	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000272168	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFHX4-AS1	DLG2	-/.	-/.	8:76667139	11:85484188	intron	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	ENSG00000253661	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
WIPI2(6935),SLC29A4(33594)	SAMD12	./.	-/.	7:5240775	8:118554925	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000177570	.	.	upstream	downstream	mismatches(1)	.	.	.
KIAA2012	TIAM1	+/.	-/.	2:202083777	21:31286127	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000156299	.	.	downstream	upstream	mismatches(1)	.	.	.
CASC15	FP236383.3	+/.	+/.	6:22499158	21:8397434	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000272168	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	RPL12P4(19716),LINC01440(314042)	./.	./.	6:168345669	20:55094856	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),mismatches(6)	.	.	.
ZFHX4-AS1	FP236383.3	-/.	+/.	8:76667139	21:8441654	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000253661	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFHX4-AS1	FP236383.3	-/.	+/.	8:76667139	21:8397434	intron	intron	translocation/3'-3'	0	0	0	0	543	low	.	.	.	.	.	ENSG00000253661	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NXPE2(282799),AP003179.1(138350)	AP001599.1	./.	+/.	11:114989868	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	PCDH11X	+/.	+/.	21:8214396	X:92108311	intron	intron	translocation/3'-3'	0	0	0	540	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000102290	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262466	6:42262467	intron	intron	duplication/ITD	0	0	0	2363	14	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(3)	.	.	.
SCAF1	FP671120.4	+/.	+/.	19:49657357	21:8207899	intron	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000126461	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP001885.2	FP671120.4	-/.	+/.	11:67317231	21:8207898	exon	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000287851	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAM110C(19084)	VN1R28P(219),SAPCD2P2(559)	./.	./.	2:19730	7:57423944	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU6-896P(233012),HMGB3P19(23868)	CFAP58	./.	+/.	6:153914565	10:104396444	intergenic	intron	translocation	0	0	0	3	554	low	.	.	.	.	.	.	ENSG00000120051	.	.	downstream	downstream	low_entropy	.	.	.
UNC5B	FP236383.3	+/.	+/.	10:71213252	21:8390946	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107731	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC018765.1(120271),HPRT1P2(144965)	AC008083.2(38156),PPIAP45(24437)	./.	./.	5:30103385	12:47317177	intergenic	intergenic	translocation	0	0	0	7	5	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HIPK3(18996),KIAA1549L(89)	FP236383.3	./.	+/.	11:33376019	21:8390946	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CACNA1E	SLC28A1	+/.	+/.	1:181644873	15:84908598	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000198216	ENSG00000156222	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
U3(104497),GPC1(41723)	NELL1	./.	+/.	2:240393940	11:20857320	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000165973	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001885.2	FP236383.3	-/.	+/.	11:67317231	21:8390945	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287851	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
UNC5B	FP236383.3	+/.	+/.	10:71213252	21:8435133	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000107731	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDRGK1(4119),ITPA(64)	GPX1P2(177037),AP001605.1(37899)	./.	./.	20:3208804	21:27320986	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC083967.1(22202),LINC01592(5174)	FP236383.3	./.	+/.	8:68874965	21:8397435	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
HIPK3(18996),KIAA1549L(89)	MIR663AHG	./.	-/.	11:33376019	20:26208397	intergenic	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000227195	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC046134.2	RPS27AP20(98222),BX890604.1(1706)	+/.	./.	3:139428094	X:3815822	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000248932	.	.	.	downstream	upstream	mismatches(1)	.	.	.
EPB41L3	AL590240.2	-/.	+/.	18:5568111	X:55141514	intron	intron	translocation/3'-3'	0	0	0	1	6	low	.	.	.	.	.	ENSG00000082397	ENSG00000276929	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(136506),NXNP1(203195)	U3(136519),NXNP1(203182)	./.	./.	1:218678405	1:218678418	intergenic	intergenic	duplication/ITD	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
SCAF1	MIR663AHG	+/.	-/.	19:49657357	20:26208397	intron	exon	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000126461	ENSG00000227195	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
UNC5B	FP671120.3(1959),FP671120.7(2484)	+/.	./.	10:71213252	21:8252108	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107731	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NAV1	AC084337.2	+/.	+/.	1:201648579	11:6496218	5'UTR	intron	translocation/3'-3'	0	0	0	0	101	low	.	.	.	.	.	ENSG00000134369	ENSG00000283977	.	.	upstream	upstream	duplicates(3),mismatches(1)	.	.	.
UNC5B	FP671120.4	+/.	+/.	10:71213252	21:8207899	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000107731	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC012085.1(14957),CRADD(20832)	AC012085.1(15010),CRADD(20779)	./.	./.	12:93656543	12:93656596	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
LINC01588	FP671120.4	-/.	+/.	14:49993364	21:8206534	intron	intron	translocation/3'-3'	0	0	0	4	9	low	.	.	.	.	.	ENSG00000214900	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
DDX43P2(110159),AC092448.1(154203)	DDX43P2(110212),AC092448.1(154150)	./.	./.	7:49370005	7:49370058	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683457	15:81683470	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
C12orf45	C12orf45	+/.	+/.	12:105046150	12:105046165	intron	intron	duplication/ITD	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000151131	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
AL138740.1	CT867976.1(150830),AC138776.1(197050)	-/.	./.	6:17094067	22:11630473	intron	intergenic	translocation	0	0	0	1	8	low	.	.	.	.	.	ENSG00000287359	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LARP1	AL023882.1	+/.	+/.	5:154812922	16:1045659	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000155506	ENSG00000287855	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	12:105046150	12:105046165	intron	intron	duplication/3'-3'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000136010	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
AC104465.1(74383),AC092810.3(31644)	AC104465.1(74417),AC092810.3(31610)	./.	./.	1:209075859	1:209075893	intergenic	intergenic	duplication/ITD	0	0	0	42	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
FP236383.3	SMIM15P1(74040),PINCR(102558)	+/.	./.	21:8399899	X:43074436	intron	intergenic	translocation	0	0	0	19	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC104465.1(74377),AC092810.3(31650)	AC104465.1(74424),AC092810.3(31603)	./.	./.	1:209075853	1:209075900	intergenic	intergenic	duplication/ITD	0	0	0	42	42	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
CFAP58	AP003390.1(4468),AP001994.1(77213)	+/.	./.	10:104396370	11:119744091	intron	intergenic	translocation	0	0	0	558	3711	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC02745	FP671120.4	-/.	+/.	11:42029388	21:8218218	intron	intron	translocation	0	0	0	9	15	low	.	.	.	.	.	ENSG00000255300	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AL645937.1(15202),AL645937.4(4339)	ZNF592(4827),ALPK3(6084)	./.	./.	6:29158136	15:84811272	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PTPRD	ZNF592(4827),ALPK3(6084)	-/.	./.	9:10556376	15:84811272	intron	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000153707	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
WASHC3	YBX2P2	-/.	-/.	12:102035145	15:93066408	intron	exon	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000120860	ENSG00000258611	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
YBX2P2	TEX11	-/.	-/.	15:93066409	X:70632775	exon	intron	translocation	0	0	0	6	8	low	.	.	.	.	.	ENSG00000258611	ENSG00000120498	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
WASHC3	DHX8	-/.	+/.	12:102035145	17:43546410	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120860	ENSG00000067596	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL645937.1(15202),AL645937.4(4339)	ETV4	./.	-/.	6:29158136	17:43546409	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000175832	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP427(5143),AC007342.2(19305)	FP236383.3	./.	+/.	16:53342714	21:8399899	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DHX8	TEX11	+/.	-/.	17:43546409	X:70632775	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000067596	ENSG00000120498	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DYNC2H1	MT-RNR2	+/.	+/.	11:103409745	MT:2442	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000187240	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
ETV4	TEX11	-/.	-/.	17:43546409	X:70632775	intron	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000175832	ENSG00000120498	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PTPRD	DHX8	-/.	+/.	9:10556376	17:43546409	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000153707	ENSG00000067596	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL365204.3(90887),AL513317.1(22400)	AL365204.3(90898),AL513317.1(22389)	./.	./.	9:24047331	9:24047342	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PTPRD	ETV4	-/.	-/.	9:10556376	17:43546409	intron	intron	translocation/5'-5'	0	0	0	12	0	low	.	.	.	.	.	ENSG00000153707	ENSG00000175832	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL358335.2	DHX8	-/.	+/.	14:48480992	17:43546410	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000258751	ENSG00000067596	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF442	DNASE1L1	-/.	-/.	19:12353540	X:154411509	intron	intron	translocation/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000198342	ENSG00000013563	.	.	upstream	upstream	mismatches(1)	.	.	.
TATDN2	AC023632.3(702),AC023632.4(3450)	+/.	./.	3:10249511	8:94590961	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
XPC	RPS18P6(259149),MTHFD2P1(222897)	-/.	./.	3:14178231	3:95431526	intron	intergenic	inversion	0	0	0	11	45	low	.	.	.	.	.	ENSG00000154767	.	.	.	downstream	downstream	duplicates(1),mismatches(2)	.	.	.
AL358335.2	ETV4	-/.	-/.	14:48480992	17:43546410	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000258751	ENSG00000175832	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL603839.4(3076),ZFP69(155)	AL645937.1(15202),AL645937.4(4339)	./.	./.	1:40477135	6:29158136	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117367	10:113117382	intron	intron	duplication/ITD	0	0	0	307	304	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL603839.4(3076),ZFP69(155)	TEX11	./.	-/.	1:40477135	X:70632775	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000120498	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC025442.2(1103),SREK1(44931)	FRS3	./.	-/.	5:66095040	6:41772934	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000137218	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3(3809),FP236383.11(3719)	+/.	./.	21:8414078	21:8458601	intron	intergenic	deletion/read-through	0	0	0	48	30	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	duplicates(4),read_through(1)	.	.	.
SEMA6A	CCDC75P1(22487),RNU6-1270P(36011)	-/-	./+	5:116467884	3:73205778	5'UTR	intergenic	translocation	0	0	0	5	15	low	.	.	Plexin_repeat(100%),Sema_domain(100%)|	.	.	ENSG00000092421	.	.	.	upstream	upstream	low_entropy	.	.	.
FP236383.3	FP236383.3(3803),FP236383.11(3725)	+/.	./.	21:8414078	21:8458595	intron	intergenic	deletion/read-through	0	0	0	48	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	duplicates(1),read_through(1)	.	.	.
AC080013.1	AP000344.1	+/.	+/.	3:158750097	22:23459169	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000240207	ENSG00000227755	.	.	downstream	upstream	mismatches(1)	.	.	.
CES5A(24340),AC040168.1(3638)	CR392039.1(1016),CR392039.3(8050)	./.	./.	16:55980371	21:8988446	intergenic	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
FP236383.3	FP236383.3(3813),FP236383.11(3715)	+/.	./.	21:8414078	21:8458605	intron	intergenic	deletion/read-through	0	0	0	48	30	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	duplicates(2),read_through(1)	.	.	.
FP236383.3	FP236383.3(3807),FP236383.11(3721)	+/.	./.	21:8414078	21:8458599	intron	intergenic	deletion/read-through	0	0	0	48	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	duplicates(4)	.	.	.
DDB2	FP671120.7(729),5_8S_rRNA(538)	+/.	./.	11:47233103	21:8256243	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(12),mismatches(2)	.	.	.
FP236383.3	FP236383.3(3805),FP236383.11(3723)	+/.	./.	21:8414078	21:8458597	intron	intergenic	deletion/read-through	0	0	0	48	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	duplicates(3)	.	.	.
RFX4	CCDC88C	+/.	-/.	12:106658923	14:91357950	intron	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000111783	ENSG00000015133	.	.	downstream	downstream	mismatches(1)	.	.	.
DTNBP1(49300),ARPC3P5(222424)	LINC02755	./.	-/.	6:15712358	11:29816652	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000254530	.	.	upstream	upstream	mismatches(1)	.	.	.
AL031123.5	LASTR	+/+	-/-	6:6731180	10:5616360	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288046	ENSG00000242147	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
DPP10	FP671120.4	+/.	+/.	2:114672372	21:8214788	intron	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	ENSG00000175497	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
VGLL3	OR5D3P(24082),OR5D17P(1274)	-/.	./.	3:86945775	11:55753703	3'UTR	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000206538	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL139246.1	LILRA1	-/-	+/-	1:2492563	19:54601090	exon	3'UTR	translocation/5'-5'	0	0	0	0	12	low	.	.	.	.	.	ENSG00000224387	ENSG00000104974	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3(3801),FP236383.11(3727)	+/.	./.	21:8414078	21:8458593	intron	intergenic	deletion/read-through	0	0	0	48	48	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	duplicates(1)	.	.	.
AL157778.1	AL157778.1	+/.	+/.	X:98484515	X:98484574	intron	intron	duplication/ITD	0	0	0	22	22	low	.	.	.	.	.	ENSG00000281566	ENSG00000281566	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
DENND5B	STARP1(223670),HNRNPA3P5(253309)	-/.	./.	12:31477254	13:65534623	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000170456	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3428),ELMOD1(760)	AP001823.1(3521),ELMOD1(667)	./.	./.	11:107590331	11:107590424	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2),merge_adjacent	.	.	.
DYSF	BAG6	+/.	-/.	2:71536419	6:31647292	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000135636	ENSG00000204463	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAXBP1(99),C21orf62-AS1(209)	PAXBP1(198),C21orf62-AS1(110)	./.	./.	21:32771891	21:32771990	intergenic	intergenic	duplication/ITD	0	0	0	487	60	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRIM2	SMKR1(18216),AC078846.1(73414)	+/.	./.	4:153249122	7:129531134	intron	intergenic	translocation	0	0	0	1	68	low	.	.	.	.	.	ENSG00000109654	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079809.1(3729),LINC01287(207048)	FP236383.3	./.	+/.	7:153148317	21:8394731	intergenic	intron	translocation	0	0	0	3	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DLG2	DLG2-AS2	-/.	+/.	11:83724477	11:83724490	intron	intron	duplication/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000150672	ENSG00000255311	.	.	upstream	downstream	low_entropy(1)	.	.	.
MTNR1A(19230),FAT1(12997)	UBE2V1P3(99043),AC010737.1(70732)	./.	./.	4:186574797	Y:3965765	intergenic	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
JAZF1	LINC01287(16430),PAXBP1P1(19014)	-/.	./.	7:28073258	7:153430415	intron	intergenic	deletion	0	0	0	0	14	low	.	.	.	.	.	ENSG00000153814	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CHTF18	ARID1B	+/+	+/+	16:793187	6:156853565	CDS	intron	translocation	0	0	0	0	0	low	.	.	ATPase_family_associated_with_various_cellular_activities_(AAA)(100%)|ARID/BRIGHT_DNA_binding_domain(100%),SWI/SNF-like_complex_subunit_BAF250/Osa_(100%)	.	.	ENSG00000127586	ENSG00000049618	.	.	downstream	upstream	mismatches(1)	.	.	.
DOCK7	MTFR1P1(64623),AL592049.1(10946)	-/.	./.	1:62459906	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000116641	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RN7SKP247(8103),ADGRL2(45948)	PPP1R12A	./.	-/.	1:81260199	12:79875394	intergenic	intron	translocation	0	0	0	6	6	low	.	.	.	.	.	.	ENSG00000058272	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
BEND7	CACNG2	-/.	-/.	10:13505669	22:36570309	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165626	ENSG00000166862	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092346	11:88092445	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
H2AZ1-DT	TSPOAP1-AS1	+/.	+/.	4:100061827	17:58385558	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000245322	ENSG00000265148	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARID1B	BEND7	+/.	-/.	6:156853580	10:13505669	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000049618	ENSG00000165626	.	.	downstream	upstream	mismatches(1)	.	.	.
GOLIM4(286),EGFEM1P(153312)	ARID1B	./.	+/.	3:168096210	6:156853582	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000049618	.	.	upstream	downstream	mismatches(1)	.	.	.
ARID1B	EFCAB8	+/.	+/.	6:156853582	20:32892238	intron	CDS	translocation	0	0	0	4	1	low	.	.	.	.	.	ENSG00000049618	ENSG00000215529	.	.	downstream	upstream	mismatches(1)	.	.	.
CHTF18	AL512638.1(547),AL512638.2(2854)	+/+	./-	16:793189	1:115476574	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	ATPase_family_associated_with_various_cellular_activities_(AAA)(100%)|	.	.	ENSG00000127586	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FHDC1	SPANXN1(312208),AL391256.1(61802)	+/.	./.	4:152965439	X:145568416	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000137460	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC073346.1(93781),AC073137.1(175578)	LINC02620	./.	-/.	7:113240111	10:104479911	intergenic	intron	translocation	0	0	0	1	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
WDR24	AL512638.1(547),AL512638.2(2854)	-/-	./-	16:687713	1:115476574	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000127580	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8448144	21:8448159	intron	intron	duplication/ITD	0	0	0	0	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC02541	BEND7	-/.	-/.	6:113624488	10:13505668	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000230943	ENSG00000165626	.	.	downstream	upstream	mismatches(1)	.	.	.
GOLIM4(286),EGFEM1P(153312)	LINC02541	./.	-/.	3:168096210	6:113624491	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000230943	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC35A4	LINC00486	+/+	+/-	5:140567707	2:32916367	CDS	intron	translocation/5'-5'	0	0	0	3	54	low	.	.	Domain_of_unknown_function_(DUF4535)(100%),Nucleotide-sugar_transporter(39%)|	.	.	ENSG00000176087	ENSG00000230876	.	.	downstream	downstream	homopolymer(1)	.	.	.
MTRNR2L8	FP671120.4	-/.	+/.	11:10508411	21:8214404	5'UTR	intron	translocation/3'-3'	0	0	0	70	8	low	.	.	.	.	.	ENSG00000255823	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
TRIM4	MTRNR2L10(24985),PAGE5(12919)	-/.	./.	7:99891671	X:55207427	3'UTR	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000146833	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MFSD1	AC093515.1	+/.	-/.	3:158750074	16:7917111	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000118855	ENSG00000260289	.	.	upstream	downstream	mismatches(1)	.	.	.
AC080013.1	AC093515.1	+/.	-/.	3:158750074	16:7917111	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000240207	ENSG00000260289	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092944.1	PLXNA4	+/.	-/.	3:157252490	7:132189045	intron	intron	translocation/3'-3'	0	0	0	26	468	low	.	.	.	.	.	ENSG00000243176	ENSG00000221866	.	.	upstream	downstream	low_entropy	.	.	.
SNX16	ERCC1	-/.	-/.	8:81842480	19:45460842	intron	intron	translocation	0	0	0	76	0	low	.	.	.	.	.	ENSG00000104497	ENSG00000012061	.	.	upstream	downstream	mismatches(1)	.	.	.
AC080013.1	SLC39A14	+/.	+/.	3:158750074	8:22403724	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000240207	ENSG00000104635	.	.	upstream	upstream	mismatches(1)	.	.	.
AC080013.1	RORA	+/.	-/.	3:158750074	15:61158248	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000240207	ENSG00000069667	.	.	upstream	upstream	mismatches(1)	.	.	.
MTF1(294),INPP5B(811),AL929472.2(811)	PPIE	./.	+/.	1:37859886	1:39692386	intergenic	5'UTR	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000084072	.	.	upstream	upstream	mismatches(1)	.	.	.
MFSD1	AMBP(3586),KIF12(4212)	+/.	./.	3:158750097	9:114081914	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000118855	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15025),LRCH1(22185)	./.	./.	13:46530929	13:46530983	intergenic	intergenic	duplication/ITD	0	0	0	45	44	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC080013.1	MAD1L1	+/.	-/.	3:158750097	7:1817390	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000240207	ENSG00000002822	.	.	downstream	downstream	mismatches(1)	.	.	.
DUX4L4	PGLYRP1	+/+	-/+	4:190082203	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258834	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
DUX4L15	PGLYRP1	+/+	-/+	10:133760942	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000278641	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022384.1	AC023632.3(702),AC023632.4(3450)	+/.	./.	3:10249511	8:94590961	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NXF2(27561),AC235565.2(6112)	NXF2	./.	+/.	X:102354283	X:102354381	intergenic	intergenic	duplication	0	0	0	55	71	low	.	.	.	.	.	.	ENSG00000269405	.	.	upstream	downstream	low_entropy(1)	.	.	.
DUX4L10	PGLYRP1	+/+	-/+	10:133744415	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000278664	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
PHKB	FP671120.4	+/.	+/.	16:47502226	21:8217546	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000102893	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
TGFBI	AL031073.2(184990),SPANXN4(100347)	+/.	./.	5:136044142	X:142925571	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000120708	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DUX4L12	PGLYRP1	+/+	-/+	10:133751034	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000278790	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
DUX4L25	PGLYRP1	+/+	-/+	10:133668236	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280337	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
MBOAT2	AC004852.2(134345),GAPDHP68(290776)	-/.	./.	2:8859780	7:9324202	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143797	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DUX4L24	PGLYRP1	+/+	-/+	10:133671535	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000274599	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNIP1	FP236383.3	+/.	+/.	5:170576935	21:8441948	intron	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000182132	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC062016.2(204807),MTND1P28(350)	MT-RNR2	./.	+/.	2:117023568	MT:2612	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
DUX4L13	PGLYRP1	+/+	-/+	10:133754333	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000276046	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
AL049697.1	MTFR1P1(64623),AL592049.1(10946)	+/.	./.	6:87494636	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000213204	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SNIP1	CFAP54	-/.	+/.	1:37553624	12:96563823	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000163877	ENSG00000188596	.	.	downstream	downstream	mismatches(1)	.	.	.
ARID1B(12702),TMEM242(65544)	FP236383.3	./.	+/.	6:157223481	21:8438950	intergenic	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
CRMP1	DDB2	-/.	+/.	4:5819929	11:47233105	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000072832	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
ESRRB	MAP2K6	+/.	+/.	14:76489392	17:69472424	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119715	ENSG00000108984	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.5(77670),FP671120.4(16244)	FP671120.4	./.	+/.	21:8181376	21:8212034	intergenic	intron	deletion/read-through	0	0	0	0	20	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
AL359232.1	RGS19	-/.	-/.	14:66508667	20:64079832	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258561	ENSG00000171700	.	.	downstream	upstream	mismatches(1)	.	.	.
PRDM16	AC239799.1(36126),RNU6-1071P(14663)	+/.	./.	1:3331292	1:146273933	intron	intergenic	duplication	0	0	0	0	9	low	.	.	.	.	.	ENSG00000142611	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GPHN	RGS19	+/.	-/.	14:66508667	20:64079832	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171723	ENSG00000171700	.	.	downstream	upstream	mismatches(1)	.	.	.
MBOAT2	AC025475.2(132443),AC113347.1(52192)	-/.	./.	2:8859782	5:26617154	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000143797	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GPHN	TXNL4A	+/.	-/.	14:66508667	18:80033602	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000171723	ENSG00000141759	.	.	downstream	downstream	mismatches(1)	.	.	.
USP31	FP671120.4	-/.	+/.	16:23069257	21:8214690	CDS	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000103404	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105252.1(10289),AC079380.1(285749)	FP236383.3	./.	+/.	4:133585497	21:8397834	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(2)	.	.	.
AC118650.1(347044),HSPA8P13(173153)	TXNL4A	./.	-/.	8:46375936	18:80033602	intergenic	intron	translocation	0	0	0	3	1	low	.	.	.	.	.	.	ENSG00000141759	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02788	SMAD3	+/.	+/.	1:90839715	15:67126777	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000285532	ENSG00000166949	.	.	upstream	upstream	mismatches(1)	.	.	.
SDK1	CCDC33	+/.	+/.	7:3678607	15:74261493	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146555	ENSG00000140481	.	.	upstream	downstream	mismatches(1)	.	.	.
CASZ1	B4GALT4-AS1	-/.	+/.	1:10792333	3:119280652	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000130940	ENSG00000240254	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AC009779.2	AL359232.1	+/+	-/-	12:55730366	14:66508667	exon	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258056	ENSG00000258561	.	.	downstream	downstream	mismatches(1)	.	.	.
CR589904.2	FP236383.3	-/.	+/.	1:248727096	21:8400582	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000286015	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022384.1	PIGS	+/.	-/.	3:10249513	17:28571019	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000087111	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC009779.2	GPHN	+/+	+/-	12:55730366	14:66508667	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258056	ENSG00000171723	.	.	downstream	downstream	mismatches(1)	.	.	.
NDUFC1	SAMD8	-/.	+/.	4:139295700	10:75129198	intron	intron	translocation/5'-5'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000156671	.	.	upstream	downstream	mismatches(1)	.	.	.
RBM5	MSRB2	+/.	+/.	3:50103159	10:23103183	CDS	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000003756	ENSG00000148450	.	.	upstream	downstream	mismatches(1)	.	.	.
GNG7(49),DIRAS1(11824)	FP236383.3	./.	+/.	19:2702743	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
HAR1B	HAR1B	-/.	-/.	20:63101561	20:63101572	intron	intron	duplication/ITD	0	0	0	8	1	low	.	.	.	.	.	ENSG00000231133	ENSG00000231133	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
U3(12667),LYPLA1P3(25304)	LINC00348(85851),RABEPKP1(41942)	./.	./.	6:71139772	13:71254268	intergenic	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC096773.1	AL139815.1	-/.	-/.	4:127047967	10:23103183	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000250945	ENSG00000286924	.	.	upstream	downstream	mismatches(1)	.	.	.
AC096773.1	U3(12667),LYPLA1P3(25304)	-/.	./.	4:127047967	6:71139772	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000250945	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117448	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AL357513.1(66903),TBC1D32(167116)	AL357513.1(66950),TBC1D32(167069)	./.	./.	6:120912378	6:120912425	intergenic	intergenic	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(6)	.	.	.
AC096773.1	MN1(31685),PITPNB(18228)	-/.	./.	4:127047967	22:27833441	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000250945	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104042.1(183659),AC061997.1(820599)	FP671120.4	./.	+/.	11:36881526	21:8218870	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ATF6	FP236383.3	+/.	+/.	1:161793158	21:8446140	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000118217	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	RPS27AP20(98225),BX890604.1(1703)	./.	./.	8:17155256	X:3815825	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TNIP3(17771),QRFPR(83405)	U3(12667),LYPLA1P3(25304)	./.	./.	4:121245237	6:71139772	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	PAXBP1(165),C21orf62-AS1(143)	+/.	./.	21:8403960	21:32771957	intron	intergenic	inversion	0	0	0	6	466	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	downstream	mismatches	.	.	.
MSRB2	LINC00348(85851),RABEPKP1(41942)	+/.	./.	10:23103183	13:71254268	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000148450	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	X:133661556	X:133661636	intron	intron	duplication/ITD	0	0	0	140	143	low	.	.	.	.	.	ENSG00000147257	ENSG00000147257	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
CADM2	CADM2	+/.	+/.	3:85179903	3:85836872	intron	intron	inversion/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000175161	ENSG00000175161	.	.	upstream	upstream	mismatches(1)	.	.	.
APC2	FP236383.3	+/+	+/+	19:1468505	21:8397816	CDS	intron	translocation	0	0	0	4	6042	low	.	.	APC_repeat(100%),Adenomatous_polyposis_coli_(APC)_repeat(100%),Adenomatous_polyposis_coli_tumour_suppressor_protein(100%),Armadillo-associated_region_on_APC(100%),Armadillo/beta-catenin-like_repeat(100%),Coiled-coil_N-terminus_of_APC__dimerisation_domain(100%),SAMP_Motif(100%)|	.	.	ENSG00000115266	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AC025475.2(132444),AC113347.1(52191)	AL139815.1	./.	-/.	5:26617155	10:23103183	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000286924	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL13AP7	ELF2	+/+	-/+	21:25361867	4:139103597	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000213885	ENSG00000109381	.	.	downstream	upstream	mismatches(1)	.	.	.
AC026904.2	Y_RNA(92916),RNA5SP103(1238)	-/-	./-	8:48551625	2:128443843	exon	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000253688	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025475.2(132444),AC113347.1(52191)	MSRB2	./.	+/.	5:26617155	10:23103183	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000148450	.	.	downstream	downstream	mismatches(1)	.	.	.
CDH8	GALP(1485),ZSCAN5B(2310)	-/.	./.	16:61831043	19:56187260	intron	intergenic	translocation	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC025475.2(132444),AC113347.1(52191)	U3(12667),LYPLA1P3(25304)	./.	./.	5:26617155	6:71139772	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
OBP2A	FP236383.3	+/.	+/.	9:135549378	21:8397818	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000122136	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC2A9	SLAIN1	-/.	+/.	4:9774828	13:77698623	intron	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	ENSG00000139737	.	.	downstream	downstream	mismatches(1)	.	.	.
MBOAT2	RIF1	-/.	+/.	2:8859780	2:151441479	intron	intron	deletion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143797	ENSG00000080345	.	.	downstream	upstream	mismatches(1)	.	.	.
RBM5	MN1(31685),PITPNB(18228)	+/.	./.	3:50103159	22:27833441	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000003756	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	AL807742.1	+/.	-/.	21:8399899	X:21320978	intron	intron	translocation/3'-3'	0	0	0	19	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000283380	.	.	upstream	downstream	mismatches(1)	.	.	.
AL358177.1(113744),C1orf100(51332)	MN1(31686),PITPNB(18227)	./.	./.	1:244301303	22:27833442	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC6A12	AL031186.1	-/.	+/.	12:199333	22:29260961	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111181	ENSG00000237015	.	.	upstream	upstream	mismatches(1)	.	.	.
AL358177.1(113744),C1orf100(51332)	MBOAT2	./.	-/.	1:244301303	2:8859780	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000143797	.	.	downstream	downstream	mismatches(1)	.	.	.
U85056.1	ADARB2(168831),AL355597.1(51233)	+/+	./+	4:190065653	10:1906356	exon	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000277162	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01790(1917),AC010983.1(240359)	MN1(31686),PITPNB(18227)	./.	./.	2:194763352	22:27833442	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HDGFL2	CSNK1E	+/.	-/.	19:4491279	22:38313621	intron	intron	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000167674	ENSG00000213923	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
MBOAT2	RBM5	-/.	+/.	2:8859782	3:50103160	intron	CDS	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000143797	ENSG00000003756	.	.	downstream	upstream	mismatches(1)	.	.	.
MBOAT2	AL136537.1(62461),MIR4801(45600)	-/.	./.	2:8859780	4:37196310	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143797	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683458	15:81683469	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
TTLL3	ATP8B3	+/+	-/-	3:9809808	19:1784757	5'UTR	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000130270	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
KIF11	MN1(31686),PITPNB(18227)	+/.	./.	10:92609197	22:27833442	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138160	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022826.2	SMG1	-/.	-/.	8:73820121	16:18892386	intron	intron	translocation	0	0	0	164	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000157106	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
MBOAT2	KIF11	-/.	+/.	2:8859780	10:92609197	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143797	ENSG00000138160	.	.	downstream	upstream	mismatches(1)	.	.	.
CASC6	AL139815.1	-/.	-/.	6:91599768	10:23103183	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000224944	ENSG00000286924	.	.	upstream	downstream	mismatches(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626669	X:18626678	intron	intron	duplication/ITD	0	0	0	101	0	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	low_entropy(1)	.	.	.
ROCK2	KIF6	-/.	-/.	2:11234942	6:39589040	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134318	ENSG00000164627	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CASC6	MSRB2	-/.	+/.	6:91599768	10:23103183	intron	intron	translocation/5'-5'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000224944	ENSG00000148450	.	.	upstream	downstream	mismatches(1)	.	.	.
GULOP(4014),CLU(3830)	ADARB2	./.	-/.	8:27593087	10:1293102	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000185736	.	.	downstream	upstream	homopolymer(1)	.	.	.
CASC6	MN1(31685),PITPNB(18228)	-/.	./.	6:91599768	22:27833441	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000224944	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MBOAT2	CASC6	-/.	-/.	2:8859782	6:91599769	intron	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000143797	ENSG00000224944	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP54	OTX2-AS1	+/.	+/.	12:96563824	14:56844325	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000188596	ENSG00000248550	.	.	downstream	downstream	mismatches(1)	.	.	.
GPC3	GPC3	-/.	-/.	X:133661556	X:133661634	intron	intron	duplication/ITD	0	0	0	140	143	low	.	.	.	.	.	ENSG00000147257	ENSG00000147257	.	.	upstream	downstream	low_entropy(6),merge_adjacent	.	.	.
OR2AQ1P(889),OR10AA1P(11297)	AFF3	./.	-/.	1:158797102	2:99559961	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000144218	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC017087.1(376618),AC018710.1(6863)	5_8S_rRNA(1688),FP236383.3(122022)	./.	./.	4:179062574	21:8258621	intergenic	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GAPDHP36(89380),RALBP1P1(20619)	MSN(5968),NANOGP9(24842)	./.	./.	3:180302488	X:65747899	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL035401.1	FP236383.3	-/.	+/.	6:22948035	21:8397820	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000233358	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SNORD3H(207161),AP002982.1(58564)	FP236383.3	./.	+/.	8:97565639	21:8442052	intergenic	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SNORD3H(207161),AP002982.1(58564)	5_8S_rRNA(2084),FP236383.3(121626)	./.	./.	8:97565639	21:8259017	intergenic	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DPYSL4	TPTE2P1(13487),RPL34P27(6603)	+/.	./.	10:132203749	13:24981974	exon	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000151640	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01287(16430),PAXBP1P1(19014)	NCOA6	./.	-/.	7:153430415	20:34709798	intergenic	intron	translocation	0	0	0	14	0	low	.	.	.	.	.	.	ENSG00000198646	.	.	upstream	downstream	mismatches(1)	.	.	.
THBS1	IL1R1	+/+	+/+	15:39593107	2:102129804	CDS	intron	translocation	0	0	0	0	0	low	.	.	Thrombospondin_type_1_domain(100%),Thrombospondin_type_3_repeat(100%),von_Willebrand_factor_type_C_domain(100%)|Immunoglobulin_domain(100%),TIR_domain(100%)	.	.	ENSG00000137801	ENSG00000115594	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3(3815),FP236383.11(3713)	+/.	./.	21:8414078	21:8458607	intron	intergenic	deletion/read-through	0	0	0	48	30	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	duplicates(1),read_through(1)	.	.	.
LINC01608	SDK2	-/.	-/.	8:110977288	17:73626999	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	ENSG00000069188	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4390),AP001994.1(77291)	AP003390.1(4399),AP001994.1(77282)	./.	./.	11:119744013	11:119744022	intergenic	intergenic	duplication/ITD	0	0	0	3458	1583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC133644.2	SEPTIN8	+/.	-/.	2:87645546	5:132788158	intron	intron	translocation	0	0	0	3	26	low	.	.	.	.	.	ENSG00000284879	ENSG00000164402	.	.	upstream	upstream	low_entropy	.	.	.
FP236383.3	CT867976.1(150830),AC138776.1(197050)	+/.	./.	21:8438951	22:11630473	intron	intergenic	translocation	0	0	0	46	8	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TRRAP	RNU6ATAC15P(10928),RPSAP29(119393)	+/+	./-	7:98949505	3:110562893	CDS	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000196367	.	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
FARS2	DACT2(25892),AL138918.1(29028)	+/.	./.	6:5782068	6:168345669	intron	intergenic	deletion	0	0	0	9	0	low	.	.	.	.	.	ENSG00000145982	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C16orf95	RNU6ATAC15P(10928),RPSAP29(119393)	-/-	./-	16:87317153	3:110562893	CDS	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000260456	.	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
C16orf95	MECP2	-/-	-/+	16:87317153	X:154125517	CDS	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000260456	ENSG00000169057	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
HVCN1	BCAS4	-/.	+/.	12:110686643	20:50866440	intron	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000122986	ENSG00000124243	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LCOR	MIR212(624),HIC1(3150)	+/.	./.	10:96980786	17:2051004	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000196233	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC008992.1(23757),AC008794.1(14594)	MT-RNR2	./.	+/.	19:31451059	MT:2230	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
DDB2	ZNF699(12029),ZNF559(1905)	+/.	./.	11:47233103	19:9321867	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(5),mismatches(1)	.	.	.
RNU6ATAC15P(10928),RPSAP29(119393)	FAT1(23087),AC108865.1(141160)	./.	./.	3:110562893	4:186749809	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SEPHS1P7(124190),RNU2-41P(34709)	RNU7-88P(31658),DIAPH3(153793)	./.	./.	2:114385416	13:59511790	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU6ATAC15P(10928),RPSAP29(119393)	DIP2A(27617),S100B(972)	./.	./.	3:110562893	21:46597632	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SH3TC1	LIN52(32937),VSX2(5277)	+/.	./.	4:8216835	14:74234172	intron	intergenic	translocation	0	0	0	1	36	low	.	.	.	.	.	ENSG00000125089	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC097634.4	RPL24P9(223684),AC074035.1(449955)	-/.	./.	3:71391864	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000285708	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DIP2A(27617),S100B(972)	MECP2	./.	-/.	21:46597632	X:154125517	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000169057	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
KIF26B	DIP2A(27617),S100B(972)	+/.	./.	1:245500131	21:46597632	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000162849	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ITGA2B	NFE2L2	-/-	-/+	17:44384408	2:177254992	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000005961	ENSG00000116044	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8206527	21:8394738	intron	intron	deletion/read-through	0	0	0	4	154	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.3(587),FP671120.7(3856)	FP236383.3	./.	+/.	21:8250736	21:8438951	intergenic	intron	deletion/read-through	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GALNTL6	AC105411.1	+/.	-/.	4:173023783	16:80507730	intron	exon	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000174473	ENSG00000259867	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAAF5	RNU4ATAC7P(158506),RPL12P4(56326)	+/.	./.	7:778751	20:55018318	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164818	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MARCHF4	LINC02620	-/.	-/.	2:216263455	10:104479909	intron	intron	translocation	0	0	0	9	1761	low	.	.	.	.	.	ENSG00000144583	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
RN7SL711P(3954),AC106786.1(12214)	FP236383.3	./.	+/.	5:123075034	21:8398658	intergenic	intron	translocation	0	0	0	4	41	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	RBFOX1	./.	+/.	2:53114408	16:6966522	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000078328	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DNAAF5	RNU4ATAC7P(158506),RPL12P4(56326)	+/.	./.	7:778851	20:55018318	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164818	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC002463.1	LMNTD1(18417),RN7SKP262(112291)	+/.	./.	7:112751479	12:25666996	intron	intergenic	translocation	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SIM1	SIM1	-/.	-/.	6:100457998	6:100458071	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000112246	ENSG00000112246	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216776	21:8397916	intron	intron	inversion/3'-3'	0	0	0	2	79	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL357507.1	H3P28(100180),AL355297.2(11600)	+/.	./.	6:74444039	6:156762617	intron	intergenic	inversion	0	0	0	0	26	low	.	.	.	.	.	ENSG00000223786	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC022384.1	GSE1	+/.	+/.	3:10249511	16:85260116	CDS	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000272410	ENSG00000131149	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	DNASE1L1	+/.	-/.	21:8397913	X:154411509	intron	intron	translocation	0	0	0	79	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000013563	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	DNASE1L1	+/.	-/.	21:8214879	X:154411509	intron	intron	translocation	0	0	0	97	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000013563	.	.	upstream	upstream	mismatches(1)	.	.	.
ATP5MC2P2(93908),RNA5SP384(84342)	FP236383.3	./.	+/.	14:49468291	21:8397814	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SALL2	FP671120.4	-/.	+/.	14:21526052	21:8214881	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165821	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262471	6:42262483	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
FP236383.3	DNASE1L1	+/.	-/.	21:8442143	X:154411509	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000013563	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2175),FP236383.3(121535)	DNASE1L1	./.	-/.	21:8259108	X:154411509	intergenic	intron	translocation	0	0	0	44	0	low	.	.	.	.	.	.	ENSG00000013563	.	.	upstream	upstream	mismatches(1)	.	.	.
SALL2	5_8S_rRNA(2177),FP236383.3(121533)	-/.	./.	14:21526052	21:8259110	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000165821	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1	SUGCT(37661),LINC01450(66243)	-/-	./+	12:117265422	7:40898424	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LHFPL2	FP236383.3	-/.	+/.	5:78676319	21:8394491	intron	intron	translocation	0	0	0	7	1	low	.	.	.	.	.	ENSG00000145685	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FAT1	SYNE3	-/.	-/.	4:186598220	14:95466313	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000083857	ENSG00000176438	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1	RBFOX1	-/.	+/.	4:186598220	16:7457871	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000083857	ENSG00000078328	.	.	downstream	upstream	mismatches(1)	.	.	.
ALPK1	FP236383.3	+/.	+/.	4:112302315	21:8433770	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000073331	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FBXW5	CFAP47	-/.	+/.	9:136943086	X:36051358	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	ENSG00000165164	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C4orf51	FAT1	+/.	-/.	4:145763828	4:186598220	intron	intron	duplication/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000237136	ENSG00000083857	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF827	FAT1	-/.	-/.	4:145763828	4:186598220	intron	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151612	ENSG00000083857	.	.	upstream	downstream	mismatches(1)	.	.	.
FAT1	MIR345(1215),RN7SL523P(9902)	-/.	./.	4:186598220	14:100309171	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000083857	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CACNA1B	SYNE3	+/.	-/.	9:137987195	14:95466310	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148408	ENSG00000176438	.	.	downstream	upstream	mismatches(2)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48505),TPT1P1(55429)	./.	./.	2:128340558	21:31784912	intergenic	intergenic	translocation	0	0	0	35	191	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
CDH8(89412),RNU6-21P(61093)	CDH8(89465),RNU6-21P(61040)	./.	./.	16:62126447	16:62126500	intergenic	intergenic	duplication/ITD	0	0	0	13	13	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(3)	.	.	.
TMPO-AS1	FP236383.3	-/.	+/.	12:98516166	21:8398542	exon	intron	translocation/3'-3'	0	0	0	9	2	low	.	.	.	.	.	ENSG00000257167	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SYNE3	TBC1D2B	-/.	-/.	14:95466310	15:78059562	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000176438	ENSG00000167202	.	.	upstream	upstream	mismatches(2)	.	.	.
TTLL3	LINC01571(49556),C16orf97(167723)	+/+	./-	3:9809808	16:51837764	5'UTR	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NOTCH2NLC	AC068473.3	+/.	+/.	1:149459569	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286219	ENSG00000267287	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012513.1	LINC02620	+/.	-/.	2:216263455	10:104479909	intron	intron	translocation/3'-3'	0	0	0	9	1761	low	.	.	.	.	.	ENSG00000231092	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
AC012085.1(14957),CRADD(20832)	AC012085.1(15008),CRADD(20781)	./.	./.	12:93656543	12:93656594	intergenic	intergenic	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(2)	.	.	.
MTHFD1	FP671120.4	+/.	+/.	14:64410913	21:8209831	intron	intron	translocation	0	0	0	11	48	low	.	.	.	.	.	ENSG00000100714	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1	CDH5	-/.	+/.	4:186598220	16:66399647	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000083857	ENSG00000179776	.	.	downstream	upstream	mismatches(1)	.	.	.
AMY2B(3342),AMY2A(33935)	CDH5	./.	+/.	1:103582876	16:66399644	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000179776	.	.	upstream	upstream	mismatches(1)	.	.	.
MEGF6	LIN52(32941),VSX2(5273)	-/.	./.	1:3565376	14:74234176	intron	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000162591	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NEBL	FP671120.7(414),5_8S_rRNA(853)	-/.	./.	10:20893508	21:8255928	intron	intergenic	translocation	0	0	0	0	143	low	.	.	.	.	.	ENSG00000078114	.	.	.	upstream	downstream	mismatches	.	.	.
H3-3B	SEPTIN2P1(127196),AL512844.2(65279)	-/-	./-	17:75778988	1:105825414	exon	intergenic	translocation	0	0	0	0	0	low	.	.	Core_histone_H2A/H2B/H3/H4(32%)|	.	.	ENSG00000132475	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC007513.1	CDH5	-/.	+/.	12:96462682	16:66399644	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258272	ENSG00000179776	.	.	downstream	upstream	mismatches(1)	.	.	.
MAFG-DT	CCDC200	+/+	-/-	17:81928147	17:43251365	exon	intron	inversion	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	ENSG00000236383	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ADAMTSL2	LIN52(32941),VSX2(5273)	+/.	./.	9:133567175	14:74234176	intron	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000197859	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LIN52(32941),VSX2(5273)	FP671120.4	./.	+/.	14:74234176	21:8206401	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02217	SPAM1	+/.	+/.	5:17419518	7:123930586	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000248455	ENSG00000106304	.	.	upstream	downstream	mismatches(1)	.	.	.
LIN52(32941),VSX2(5273)	FP236383.3	./.	+/.	14:74234176	21:8389448	intergenic	intron	translocation	0	0	0	36	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00240(53),VN1R13P(563)	AC093627.22	./.	-/.	6:27059802	7:117610	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000287883	.	.	upstream	upstream	mismatches(1)	.	.	.
RASGRP3	LINC01320	+/.	+/.	2:33503356	2:33767473	intron	intron	deletion/read-through	0	1	0	0	81	low	.	.	.	.	.	ENSG00000152689	ENSG00000228262	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	FP236383.11(1898),FP236383.6(558)	+/.	./.	21:8394722	21:8464696	intron	intergenic	inversion	0	0	0	154	3	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
FXNP1(22669),NRXN3(87426)	FXNP1(22710),NRXN3(87385)	./.	./.	14:78082947	14:78082988	intergenic	intergenic	duplication/ITD	0	0	0	336	336	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(4)	.	.	.
SFN(3788),GPN2(7888)	GPC3	./.	-/.	1:26868244	X:133661638	intergenic	intron	translocation	0	0	0	80	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
SFN(3788),GPN2(7888)	AF064860.1	./.	+/.	1:26868244	21:39679805	intergenic	intron	translocation	0	0	0	80	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	upstream	upstream	low_entropy	.	.	.
SFN(3788),GPN2(7888)	DHRS9	./.	+/.	1:26868244	2:169079917	intergenic	intron	translocation	0	0	0	80	29	low	.	.	.	.	.	.	ENSG00000073737	.	.	upstream	upstream	low_entropy	.	.	.
RPS10-NUDT3	PHKG2	-/.	+/.	6:34421330	16:30749091	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000270800	ENSG00000156873	.	.	upstream	downstream	mismatches(1)	.	.	.
MYT1L	AL009177.1	-/.	+/.	2:1866460	6:14487262	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186487	ENSG00000286277	.	.	downstream	upstream	mismatches(1)	.	.	.
GGPS1	LINC-PINT	+/.	-/.	1:235327619	7:131031648	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000231721	.	.	upstream	upstream	mismatches(1)	.	.	.
SFN(3788),GPN2(7888)	LDB2(156),AC106894.1(74441)	./.	./.	1:26868244	4:16898834	intergenic	intergenic	translocation	0	0	0	80	9	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
SFN(3788),GPN2(7888)	RBFOX3	./.	-/.	1:26868244	17:79442211	intergenic	intron	translocation	0	0	0	80	28	low	.	.	.	.	.	.	ENSG00000167281	.	.	upstream	upstream	low_entropy	.	.	.
SFN(3788),GPN2(7888)	NR2F1-AS1	./.	-/.	1:26868244	5:93581738	intergenic	intron	translocation	0	0	0	80	5	low	.	.	.	.	.	.	ENSG00000237187	.	.	upstream	downstream	low_entropy	.	.	.
ARHGAP17	FP236383.3	-/.	+/.	16:24994693	21:8442063	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000140750	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
TSHR	GTF2A1	+/.	-/.	14:80955361	14:81220357	intron	intron	deletion/read-through/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000165409	ENSG00000165417	.	.	downstream	upstream	low_entropy(1)	.	.	.
H4-16	CECR2	-/.	+/.	12:14769959	22:17370317	exon	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000197837	ENSG00000099954	.	.	downstream	upstream	mismatches(1)	.	.	.
UNC13D	TLE3(1507),RNU6-745P(93553)	-/-	./-	17:75840083	15:70099683	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	C2_domain(59%)|	.	.	ENSG00000092929	.	.	.	upstream	downstream	mismatches(1)	.	.	.
OXTR	TLE3(1507),RNU6-745P(93553)	-/.	./.	3:8767736	15:70099683	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000180914	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SFI1	AC091182.1(10752),AC091182.2(62696)	+/+	./+	22:31613635	8:37342743	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198089	.	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104496),GPC1(41724)	GRIN2C	./.	-/.	2:240393939	17:74861329	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000161509	.	.	upstream	downstream	mismatches(1)	.	.	.
SPRED2	AC004540.2	-/.	-/.	2:65359095	7:26376175	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198369	ENSG00000225792	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
GRID1	NUP50	-/.	+/.	10:86184329	22:45164252	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182771	ENSG00000093000	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214882	21:8403085	intron	intron	duplication	0	0	0	0	2	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
NPHP4	AC010230.1	-/.	-/.	1:5885358	5:114543700	intron	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000131697	ENSG00000246316	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	AP001347.1	+/.	+/.	21:8398541	21:14100748	intron	intron	duplication	0	0	0	2	1	low	.	.	.	.	.	ENSG00000280441	ENSG00000224905	.	.	upstream	downstream	mismatches(1)	.	.	.
OTUD7A	DDB2	-/-	+/-	15:31870671	11:47233105	5'UTR	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000169918	ENSG00000134574	.	.	upstream	downstream	duplicates(1)	.	.	.
NPHP4	SLC36A2(7216),AC034205.2(11493)	-/.	./.	1:5885358	5:151354806	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000131697	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC105916.1	AL162151.3(95346),AL162151.1(59525)	-/.	./.	4:9586729	14:99098891	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287117	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4502),AP001994.1(77179)	FXNP1(22687),NRXN3(87408)	./.	./.	11:119744125	14:78082965	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.6	WDR62(1882),OVOL3(4161)	-/-	./+	21:8210792	19:36106990	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
WDR62(1882),OVOL3(4161)	CT867976.1(151070),AC138776.1(196810)	./.	./.	19:36106990	22:11630713	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PFN2	RN7SKP263(6593),AC123567.1(124437)	-/.	./.	3:149984027	12:94015640	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000070087	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.7	AC114477.1(10760),RANP7(81328)	-/-	./-	21:8255001	3:22822807	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000281383	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.5	AC114477.1(10760),RANP7(81328)	-/-	./-	21:8438038	3:22822807	exon	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000281181	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IL15(110187),INPP4B(178986)	H3C10	./.	+/.	4:141844174	6:27810927	intergenic	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278828	.	.	upstream	upstream	duplicates(8),mismatches(1)	.	.	.
AC008691.1	TBC1D32	+/.	-/.	5:159645741	6:121333739	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000146350	.	.	upstream	downstream	mismatches(1)	.	.	.
TPT1P14(48524),RPL35AP37(90450)	TPT1P14(48533),RPL35AP37(90441)	./.	./.	X:15026987	X:15026996	intergenic	intergenic	duplication/ITD	0	0	0	26	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AC114477.1(10760),RANP7(81328)	5_8S_rRNA(1748),DUX4L32(19830)	./.	./.	3:22822807	20:29298994	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC104777.1	AL139243.1	-/.	+/.	2:150617554	10:98446742	intron	exon	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000287261	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02864	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	18:73168245	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000263711	.	.	.	upstream	upstream	duplicates(18),mismatches(13)	.	.	.
RUFY4(18122),CXCR2(16586)	NF1	./.	+/.	2:218108703	17:31130979	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000196712	.	.	downstream	upstream	duplicates(4),homopolymer(3)	.	.	.
LARS2	PCNT	+/.	+/.	3:45493462	21:46422072	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000011376	ENSG00000160299	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7	WDR62(1882),OVOL3(4161)	-/-	./+	21:8255000	19:36106990	exon	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000281383	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GALNT2	TATDN2	+/.	+/.	1:230187482	3:10249511	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000157014	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGAP30	AP000255.1(48410),TPT1P1(55524)	-/.	./.	1:161059767	21:31784817	intron	intergenic	translocation	0	0	0	31	90	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
GALNT2	AC022384.1	+/.	+/.	1:230187482	3:10249511	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000272410	.	.	upstream	upstream	mismatches(1)	.	.	.
DHFR	MT-RNR2	-/.	+/.	5:80650757	MT:2439	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000228716	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
MT-RNR2	MT-RNR2	+/.	+/.	MT:1961	MT:2439	exon	exon	inversion/3'-3'	0	0	0	.	.	low	.	.	.	.	.	ENSG00000210082	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
TLE4	AP003066.1	+/.	+/.	9:79572888	11:96955788	intron	intron	translocation/5'-5'	0	0	0	12	12	low	.	.	.	.	.	ENSG00000106829	ENSG00000254587	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
PPM1L	MT-RNR2	+/.	+/.	3:160947690	MT:2439	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000163590	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
MTRNR2L1	MT-RNR2	+/.	+/.	17:22523389	MT:2439	5'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000256618	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AL138889.1(35815),MIR1275(36526)	ATP5MC1P8(4375),KCNMA1(28365)	./.	./.	6:33963446	10:76841236	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CT867976.1(150833),AC138776.1(197047)	UBE2V1P3(94050),AC010737.1(75725)	./.	./.	22:11630476	Y:3960772	intergenic	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL591463.1(101809),LRRIQ3(8866)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	1:74017149	21:8258619	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC35F1	PPP4R3A(8536),AL133373.2(35320)	+/.	./.	6:118138884	14:91519090	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196376	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SEMA3F-AS1	FP671120.4	-/.	+/.	3:50146956	21:8206404	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000235016	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
HFM1	TBL1XR1	-/.	-/.	1:91387411	3:177052293	intron	intron	translocation	0	0	0	6	1	low	.	.	.	.	.	ENSG00000162669	ENSG00000177565	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01358	GAS7	+/.	-/.	1:59216833	17:10019884	intron	CDS	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000237352	ENSG00000007237	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00399(22677),AL163541.1(54421)	TEX101	./.	+/.	13:109424318	19:43406229	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000131126	.	.	downstream	upstream	mismatches(1)	.	.	.
AC062004.1(83779),AC084706.1(527032)	FP236383.3	./.	+/.	8:77621069	21:8442064	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
FP671120.6	AC114477.1(10760),RANP7(81328)	-/-	./-	21:8210793	3:22822807	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SEMA5B(2018),PDIA5(36402)	ADCY5	./.	-/.	3:123030623	3:123030638	intergenic	intergenic	duplication	0	0	0	115	0	low	.	.	.	.	.	.	ENSG00000173175	.	.	upstream	downstream	low_entropy(1)	.	.	.
CCSER1	NIT2	+/-	+/+	4:90127963	3:100355179	intron	CDS/splice-site	translocation/3'-3'	0	0	0	3	0	low	.	.	|Carbon-nitrogen_hydrolase(3%)	.	.	ENSG00000184305	ENSG00000114021	.	.	upstream	upstream	mismatches(1)	.	.	.
AC103591.2	CCSER1	-/.	+/.	1:78043466	4:90127963	exon	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000213561	ENSG00000184305	.	.	downstream	upstream	mismatches(1)	.	.	.
CCSER1	AC104389.5	+/.	-/.	4:90127964	11:5367601	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000184305	ENSG00000239920	.	.	upstream	downstream	mismatches(1)	.	.	.
CCSER1	HBE1	+/.	-/.	4:90127964	11:5367601	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000184305	ENSG00000213931	.	.	upstream	downstream	mismatches(1)	.	.	.
ZFR(45155),AC074134.1(32863)	MT-RNR2	./.	+/.	5:32489895	MT:2211	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
KCNMB2	KCNMB2-AS1	+/.	-/.	3:178655093	3:178655110	intron	intron	duplication/3'-3'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000197584	ENSG00000237978	.	.	upstream	downstream	low_entropy(1)	.	.	.
DSCAM	RPL24P9(223684),AC074035.1(449955)	-/.	./.	21:40453575	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000171587	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IGF2R	APLF	+/+	+/-	6:159969259	2:68643276	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197081	ENSG00000169621	.	.	downstream	downstream	mismatches(1)	.	.	.
CCSER1	OR51B5	+/.	-/.	4:90127964	11:5367601	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000184305	ENSG00000167355	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	CT867976.1(150114),AC138776.1(197766)	+/.	./.	21:8214780	22:11629757	intron	intergenic	translocation	0	0	0	6035	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
PPP6R3	CT867976.1(127095),AC138776.1(220785)	+/.	./.	11:68530290	22:11606738	intron	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000110075	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC010970.1	FP671120.4	-/-	+/+	Y:10197467	21:8214780	exon	intron	translocation	0	0	0	0	6035	low	.	.	.	.	.	ENSG00000225840	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
5_8S_rRNA(2687),AC018688.1(57838)	FP671120.4	./.	+/.	20:30487763	21:8214780	intergenic	intron	translocation	0	0	0	0	6035	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ATP5MC2P2(93908),RNA5SP384(84342)	FP671120.4	./.	+/.	14:49468291	21:8214780	intergenic	intron	translocation	0	0	0	0	6035	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC007405.1	CLEC11A	-/.	+/.	2:170768858	19:50725294	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234350	ENSG00000105472	.	.	downstream	upstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	7:116638069	7:116638078	intron	intron	duplication/ITD	0	0	0	63	0	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
IDI1P1(60087),RNF14P1(44009)	FP671120.4	./.	+/.	2:138368057	21:8214782	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC068722.1(24279),AC068714.1(143845)	FP236383.3	./.	+/.	15:45955348	21:8442046	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC092807.3	FHIT	-/.	-/.	1:85576727	3:61042066	exon	5'UTR	translocation/3'-3'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000282057	ENSG00000189283	.	.	downstream	downstream	mismatches(1)	.	.	.
AC068722.1(24279),AC068714.1(143845)	5_8S_rRNA(2078),FP236383.3(121632)	./.	./.	15:45955348	21:8259011	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
5_8S_rRNA(2076),FP236383.3(121634)	CT867976.1(150114),AC138776.1(197766)	./.	./.	21:8259009	22:11629757	intergenic	intergenic	translocation	0	0	0	5911	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TRAM1L1(78295),AC107399.1(86053)	FP671120.4	./.	+/.	4:117163871	21:8206534	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC010970.1	5_8S_rRNA(2076),FP236383.3(121634)	-/-	./+	Y:10197467	21:8259009	exon	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000225840	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
CARMN(7002),CSNK1A1(53145)	FP671120.4	./.	+/.	5:149439837	21:8218870	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010970.1	FP236383.3	-/-	+/+	Y:10197467	21:8397814	exon	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000225840	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DYNLL2	TSPOAP1-AS1	+/.	+/.	17:58083857	17:58385558	intron	intron	duplication	0	0	0	4	0	low	.	.	.	.	.	ENSG00000264364	ENSG00000265148	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RBM34	IFT43(29893),AC016526.4(17229)	-/.	./.	1:234997587	14:76114478	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000188739	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SUPT5H	SUPT5H	+/+	+/+	19:39458247	19:39458236	exon	exon	duplication/ITD	0	0	0	24	24	low	.	.	Spt5_transcription_elongation_factor__acidic_N-terminal(28%)|Early_transcription_elongation_factor_of_RNA_pol_II__NGN_section(100%),KOW_motif(100%),Spt5_transcription_elongation_factor__acidic_N-terminal(71%)	.	.	ENSG00000196235	ENSG00000196235	.	.	downstream	upstream	duplicates(1),merge_adjacent	.	.	.
RBFOX1	FP236383.3	+/.	+/.	16:7555421	21:8397814	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000078328	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
IDI1P1(60087),RNF14P1(44009)	FP236383.3	./.	+/.	2:138368057	21:8397816	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
USP9YP6	USP9YP6	-/.	-/.	Y:17913553	Y:17913568	intron	intron	duplication/ITD	0	0	0	26	24	low	.	.	.	.	.	ENSG00000226116	ENSG00000226116	.	.	upstream	downstream	duplicates(13),low_entropy(8)	.	.	.
LMNB1	ACSM3	+/+	+/+	5:126776742	16:20739152	5'UTR	intron	translocation	0	0	0	18	0	low	.	.	|AMP-binding_enzyme(100%),AMP-binding_enzyme_C-terminal_domain(100%)	.	.	ENSG00000113368	ENSG00000005187	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP000721.1	FP236383.3	+/.	+/.	11:63978520	21:8444185	intron	intron	translocation	0	0	0	0	214	low	.	.	.	.	.	ENSG00000256100	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC068722.1(24279),AC068714.1(143845)	FP671120.4	./.	+/.	15:45955348	21:8214782	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC242842.3	AC068473.3	+/.	+/.	1:149459569	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286185	ENSG00000267287	.	.	upstream	upstream	mismatches(1)	.	.	.
NBPF14	TMPO-AS1	-/.	-/.	1:148611697	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000270629	ENSG00000257167	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	BAIAP2	+/.	+/.	11:47233103	17:81089645	intron	intron	translocation/5'-5'	0	0	0	341	1	low	.	.	.	.	.	ENSG00000134574	ENSG00000175866	.	.	downstream	downstream	mismatches(1)	.	.	.
KPNA3	SNX1	-/.	+/.	13:49738945	15:64095912	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000102753	ENSG00000028528	.	.	downstream	upstream	mismatches(1)	.	.	.
NOTCH2NLB	TMPO-AS1	-/.	-/.	1:148611697	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000286019	ENSG00000257167	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH2NLB	AC068473.3	-/.	+/.	1:148611699	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286019	ENSG00000267287	.	.	downstream	upstream	mismatches(1)	.	.	.
ANKRD30BL	FP236383.3	-/.	+/.	2:132255984	21:8442044	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000163046	ENSG00000280441	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
BICC1	TEDC1	+/.	+/.	10:58688003	14:105493961	intron	intron	translocation/5'-5'	0	0	0	87	0	low	.	.	.	.	.	ENSG00000122870	ENSG00000185347	.	.	downstream	downstream	duplicates(2)	.	.	.
AP005242.4(3764),AP005242.2(6976)	AP005242.4(3777),AP005242.2(6963)	./.	./.	18:14996999	18:14997012	intergenic	intergenic	duplication/ITD	0	0	0	25	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AC092170.1(239686),AC064856.1(115139)	LINC01514(17915),LBX1(14133)	./.	./.	2:117421248	10:101212062	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NOTCH2NLR	TMPO-AS1	+/.	-/.	1:120789228	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000286106	ENSG00000257167	.	.	upstream	downstream	mismatches(1)	.	.	.
AP001823.1(3429),ELMOD1(759)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590332	14:106419138	intergenic	intergenic	translocation	0	0	0	1909	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
PKN2	SPTB	+/.	-/.	1:88768909	14:64825795	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000065243	ENSG00000070182	.	.	upstream	downstream	mismatches(1)	.	.	.
NBPF26	TMPO-AS1	+/.	-/.	1:120789228	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273136	ENSG00000257167	.	.	upstream	downstream	mismatches(1)	.	.	.
RAB30	AC026371.1(57707),IPO8(78979)	-/.	./.	11:83068816	12:30550009	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000137502	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
ILRUN	TRIP11	-/.	-/.	6:34634770	14:91982490	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000196821	ENSG00000100815	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR4300HG	FXNP1(22683),NRXN3(87412)	-/.	./.	11:82143171	14:78082961	intron	intergenic	translocation	0	0	0	1095	424	low	.	.	.	.	.	ENSG00000245832	.	.	.	downstream	upstream	low_entropy	.	.	.
NOTCH2NLR	AC068473.3	+/.	+/.	1:120789226	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286106	ENSG00000267287	.	.	upstream	upstream	mismatches(1)	.	.	.
THSD7B	ZBTB24(47),AL109947.1(372)	+/.	./.	2:137578927	6:109483266	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000144229	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NBPF26	AC068473.3	+/.	+/.	1:120789226	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273136	ENSG00000267287	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF638	SLC25A21	+/.	-/.	2:71338690	14:37161017	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000075292	ENSG00000183032	.	.	downstream	upstream	mismatches(1)	.	.	.
NOTCH2NLA	TMPO-AS1	-/.	-/.	1:146160779	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000264343	ENSG00000257167	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL21P12(17605),GCSHP2(17191)	DRG1	./.	+/.	14:103167013	22:31472559	intergenic	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000185721	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC021678.2	FP671120.4	-/.	+/.	8:28332986	21:8218870	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253690	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	RUFY4(18120),CXCR2(16588)	./.	./.	2:128443843	2:218108701	intergenic	intergenic	inversion	0	0	0	7	193	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(3),mismatches(3)	.	.	.
AC242842.3	TMPO-AS1	+/.	-/.	1:149459571	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000286185	ENSG00000257167	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	MT-RNR2	-/.	+/.	5:80650268	MT:2175	intron	exon	translocation/3'-3'	0	0	0	68	.	low	.	.	.	.	.	ENSG00000228716	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
SREBF2-AS1	AC091588.3	-/-	-/+	22:41833576	18:22204128	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184068	ENSG00000266283	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NR5A2	MT-RNR2	+/.	+/.	1:200034144	MT:2225	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000116833	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC002463.1	HS3ST4(47964),AC009158.1(116415)	+/.	./.	7:112751479	16:26185649	intron	intergenic	translocation	1	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	.	.	.	upstream	upstream	duplicates(2),min_support	.	.	.
RPLP0	KCNK2(129190),VDAC1P10(10204)	-/-	./+	12:120200908	1:215366280	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000089157	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CNPY1	RBM33(11094),SHH(7401)	-/.	./.	7:155533511	7:155792579	intron	intergenic	deletion/read-through	0	0	0	0	13	low	.	.	.	.	.	ENSG00000146910	.	.	.	downstream	upstream	duplicates(3),low_entropy(1)	.	.	.
AC009403.2	RBM33(11094),SHH(7401)	-/.	./.	7:155533511	7:155792579	intron	intergenic	deletion/read-through	0	0	0	0	13	low	.	.	.	.	.	ENSG00000283128	.	.	.	downstream	upstream	duplicates(3),low_entropy(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683458	15:81683469	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
NAALADL2	LINC01168(18909),ADGRA1(75666)	+/.	./.	3:174942086	10:132995263	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000177694	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LGI2(57572),SEPSECS(31496)	INPP5A	./.	+/.	4:25088518	10:132548389	intergenic	intron	translocation	0	0	0	68	0	low	.	.	.	.	.	.	ENSG00000068383	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
RAD18	FP236383.3	-/.	+/.	3:8909455	21:8397828	intron	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	ENSG00000070950	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RAD18	FP671120.4	-/.	+/.	3:8909455	21:8214794	intron	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	ENSG00000070950	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
TLE4	BX546450.1(36085),PASD1(11345)	+/.	./.	9:79572888	X:151552330	intron	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
FP671120.4	TIAM1	+/.	-/.	21:8214794	21:31286127	intron	intron	inversion	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000156299	.	.	upstream	upstream	mismatches(1)	.	.	.
RAD18	FP236383.3	-/.	+/.	3:8909455	21:8442058	intron	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	ENSG00000070950	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	TIAM1	+/.	-/.	21:8442058	21:31286127	intron	intron	inversion	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000156299	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2090),FP236383.3(121620)	TIAM1	./.	-/.	21:8259023	21:31286127	intergenic	intron	inversion	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000156299	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	RUNX1	+/.	-/.	21:8442061	21:34951104	intron	intron	duplication/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000159216	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM150B	TMEM150B	-/.	-/.	19:55331424	19:55331433	intron	intron	duplication/ITD	0	0	0	5	3	low	.	.	.	.	.	ENSG00000180061	ENSG00000180061	.	.	upstream	downstream	low_entropy(1)	.	.	.
CMTM8	AL512634.1(10299),CHCHD2P9(182691)	+/.	./.	3:32347437	9:79208613	intron	intergenic	translocation	0	0	0	1	6	low	.	.	.	.	.	ENSG00000170293	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	7:35674397	7:35674458	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000122557	ENSG00000122557	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	GPC3	-/.	-/.	10:104479908	X:133661638	intron	intron	translocation/3'-3'	0	0	0	1761	143	low	.	.	.	.	.	ENSG00000225768	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
PTGDS	FP236383.3	+/+	+/+	9:136980150	21:8442054	exon	intron	translocation	0	0	0	4	5962	low	.	.	Lipocalin_/_cytosolic_fatty-acid_binding_protein_family(75%)|	.	.	ENSG00000107317	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
HERPUD2	HERPUD2	-/.	-/.	7:35674401	7:35674459	intron	intron	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	ENSG00000122557	ENSG00000122557	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	CT867976.1(150114),AC138776.1(197766)	+/.	./.	21:8397814	22:11629757	intron	intergenic	translocation	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL627095.1(5386),ZNF669(8509)	AL627095.1(5444),ZNF669(8451)	./.	./.	1:247091453	1:247091511	intergenic	intergenic	duplication/ITD	0	0	0	12	12	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL356157.1(162238),TMEM72-AS1(28777)	C21orf62-AS1	./.	+/.	10:44764342	21:32936437	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000205930	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	LINC00273(640),RNA5-8SP2(2283)	-/.	./.	3:96617790	16:34160676	5'UTR	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000269028	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC064874.1	AC093515.1	-/.	-/.	2:235775619	16:7970721	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000222007	ENSG00000260289	.	.	upstream	upstream	mismatches(1)	.	.	.
CACNA1B	5_8S_rRNA(2084),FP236383.3(121626)	+/.	./.	9:137877970	21:8259017	CDS	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000148408	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC009879.3(3264),VXN(3264),MYBL1(40387)	C21orf62-AS1	./.	+/.	8:66521788	21:32936437	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000205930	.	.	upstream	downstream	mismatches(1)	.	.	.
TET1	MAP2K5	+/+	+/-	10:68560380	15:67706558	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138336	ENSG00000137764	.	.	downstream	downstream	homopolymer(1)	.	.	.
HIVEP2	DDB2	-/.	+/.	6:142946391	11:47233105	intron	intron	translocation	0	1	0	63	341	low	.	.	.	.	.	ENSG00000010818	ENSG00000134574	.	.	downstream	downstream	min_support,mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479803	10:104479896	intron	intron	duplication/ITD	0	0	0	2200	2216	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(2)	.	.	.
ERI3	ANKRD34C-AS1	-/.	-/.	1:44320096	15:79162041	intron	intron	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000259234	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RCC2(290),ARHGEF10L(99731)	AC122683.1(3644),HMGN2P24(89995)	./.	./.	1:17439967	3:40609071	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
POU2F2	TTLL1	-/.	-/.	19:42153000	22:43059438	intron	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000028277	ENSG00000100271	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683458	15:81683469	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(5),low_entropy(2)	.	.	.
EBNA1BP2	LINC02459(32871),TBX5(79270)	-/-	./-	1:43172530	12:114274641	5'UTR	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000117395	.	.	.	upstream	downstream	mismatches(1)	.	.	.
EBNA1BP2	FIGNL2	-/-	-/+	1:43172530	12:51846742	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000117395	ENSG00000261308	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092389	intron	intron	translocation/3'-3'	0	0	0	558	1170	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
AL591122.1(12916),ZBTB40(49440)	DDB2	./.	+/.	1:22379398	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079950.1(25950),AC008124.1(81476)	FAM156A	./.	-/.	12:45636570	X:52944075	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000268350	.	.	upstream	upstream	mismatches(1)	.	.	.
ARID4B	RASD2(44070),MB(8695)	-/.	./.	1:235327619	22:35598069	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02196	ZNF710	+/.	+/.	5:7211585	15:90036117	intron	intron	translocation/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000250974	ENSG00000140548	.	.	downstream	downstream	mismatches(1)	.	.	.
AC006058.1(5932),TOPAZ1(113589)	SH3PXD2A	./.	-/.	3:44128297	10:103797395	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000107957	.	.	downstream	upstream	mismatches(1)	.	.	.
AC006058.1(5932),TOPAZ1(113589)	5_8S_rRNA(2393),FP236383.3(121317)	./.	./.	3:44128297	21:8259326	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SHE	5_8S_rRNA(2393),FP236383.3(121317)	-/.	./.	1:154469819	21:8259326	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169291	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LPCAT1	GCNT1	-/.	+/.	5:1469506	9:76571859	intron	intron	translocation/3'-3'	0	0	0	0	38	low	.	.	.	.	.	ENSG00000153395	ENSG00000187210	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BTBD11	5_8S_rRNA(2394),FP236383.3(121316)	+/.	./.	12:107400730	21:8259327	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151136	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC093520.1	AC006058.1(5932),TOPAZ1(113589)	+/+	./-	16:31403795	3:44128297	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000260757	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GALNS	FP236383.3	-/.	+/.	16:88834370	21:8397815	intron	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000141012	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AC093520.1	BTBD11	+/+	+/+	16:31403794	12:107400730	exon	intron	translocation	0	0	0	0	0	low	.	.	|Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),BTB/POZ_domain(100%)	.	.	ENSG00000260757	ENSG00000151136	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC02782(112133),AL139823.1(98896)	CLCN7	./.	-/.	1:5203032	16:1471974	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000103249	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
INHBB(15455),LINC01101(97077)	AC006058.1(5932),TOPAZ1(113589)	./.	./.	2:120367258	3:44128297	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SHE	INHBB(15455),LINC01101(97077)	-/.	./.	1:154469819	2:120367258	3'UTR	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000169291	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SHE	SH3PXD2A	-/.	-/.	1:154469819	10:103797395	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169291	ENSG00000107957	.	.	downstream	upstream	mismatches(1)	.	.	.
SH3PXD2A	BTBD11	-/.	+/.	10:103797396	12:107400730	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107957	ENSG00000151136	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC006058.1(5932),TOPAZ1(113589)	FP671120.4	./.	+/.	3:44128297	21:8215097	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	12:105046145	12:105046191	intron	intron	duplication/3'-3'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000136010	.	.	upstream	downstream	duplicates(1)	.	.	.
PIK3R1(28327),AC024579.1(44617)	AC011632.2(14791),CRISPLD1(73412)	./.	./.	5:68330148	8:74911093	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
EPHB3(1388),MAGEF1(126568)	WWC1	./.	+/.	3:184583796	5:168337914	intergenic	intron	translocation	0	0	0	0	16	low	.	.	.	.	.	.	ENSG00000113645	.	.	downstream	upstream	mismatches(1)	.	.	.
TTYH3	FP671120.4	+/.	+/.	7:2660828	21:8214782	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000136295	ENSG00000278996	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AP001823.1(3450),ELMOD1(738)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590353	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
GRM8(1068),PRELID3BP10(41459)	AP001599.1	./.	+/.	7:127254161	21:26914102	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
H3C10	UTRN	+/.	+/.	6:27810927	6:144823828	3'UTR	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278828	ENSG00000152818	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AF235103.3	USB1(2806),MMP15(1330)	-/.	./.	8:144867653	16:58024424	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000286681	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IP6K1(3646),CDHR4(544)	AP001823.1(3433),ELMOD1(755)	./.	./.	3:49790188	11:107590336	intergenic	intergenic	translocation	0	0	0	14	1909	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
MTRNR2L8	TAFA5	-/.	+/.	11:10508408	22:48741205	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000255823	ENSG00000219438	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZNF385B	AF235103.3	-/.	-/.	2:179654179	8:144867653	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000144331	ENSG00000286681	.	.	upstream	downstream	mismatches(1)	.	.	.
AGRN	CNKSR3	+/.	-/.	1:1041726	6:154494759	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000153721	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNRF2P2	HDAC8	-/.	-/.	7:29663817	X:72350912	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000225264	ENSG00000147099	.	.	downstream	downstream	mismatches(1)	.	.	.
DPY19L2P3	HDAC8	+/.	-/.	7:29663817	X:72350912	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000227855	ENSG00000147099	.	.	downstream	downstream	mismatches(1)	.	.	.
RPRD2	CHMP4B(17847),TPM3P2(40110)	+/.	./.	1:150399480	20:33872213	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000163125	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	AL590807.1	+/.	-/.	11:47233105	13:80707415	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000286746	.	.	downstream	downstream	mismatches(1)	.	.	.
DPY19L1P1	AL133500.1	-/.	-/.	7:32749930	X:72350912	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000229358	ENSG00000285547	.	.	upstream	downstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262475	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
CFAP58	FBXL20	+/.	-/.	10:104396382	17:39324012	intron	intron	translocation	0	0	0	561	0	low	.	.	.	.	.	ENSG00000120051	ENSG00000108306	.	.	upstream	upstream	low_entropy(1)	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	AC092275.1	./.	+/.	1:148724716	16:85260115	intergenic	intron	translocation	0	0	0	4	19	low	.	.	.	.	.	.	ENSG00000287787	.	.	downstream	upstream	mismatches(1)	.	.	.
DPY19L2P1	AL133500.1	-/.	-/.	7:35175639	X:72350912	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000189212	ENSG00000285547	.	.	upstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021200	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
LSAMP	LSAMP	-/.	-/.	3:116642646	3:116642661	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000185565	ENSG00000185565	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ESPN	RUFY4(18122),CXCR2(16586)	+/.	./.	1:6440103	2:218108703	intron	intergenic	translocation	0	0	0	0	193	low	.	.	.	.	.	ENSG00000187017	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
LINC01592	SPPL2B	-/.	+/.	8:68940496	19:2338920	intron	intron	translocation/5'-5'	0	0	0	30	15	low	.	.	.	.	.	ENSG00000253658	ENSG00000005206	.	.	upstream	downstream	mismatches(1)	.	.	.
TUFT1	GCC2	+/.	+/.	1:151568007	2:108492236	intron	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000143367	ENSG00000135968	.	.	upstream	upstream	mismatches(1)	.	.	.
MTND1P27(582),LRP1B(9356)	AC092757.2	./.	+/.	2:140222067	15:59122737	intergenic	intron	translocation	0	0	0	23	0	low	.	.	.	.	.	.	ENSG00000259732	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
RHOQ	C1D	+/.	-/.	2:46542783	2:68065407	5'UTR	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	ENSG00000197223	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
VPS13D	GCC2	+/.	+/.	1:12330044	2:108492236	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000048707	ENSG00000135968	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	LINC01864(5002),ZNF787(3563)	+/.	./.	2:32916401	19:56083803	intron	intergenic	translocation	0	0	0	19	1	low	.	.	.	.	.	ENSG00000230876	.	.	.	upstream	downstream	low_entropy	.	.	.
AC010970.1	5_8S_rRNA(2081),FP236383.3(121629)	-/-	./+	Y:10197463	21:8259014	exon	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000225840	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
POU2F3	Z93403.1	+/.	+/.	11:120247271	X:42277880	intron	intron	translocation/3'-3'	0	0	0	0	31	low	.	.	.	.	.	ENSG00000137709	ENSG00000231772	.	.	upstream	upstream	mismatches(1)	.	.	.
PPP2R5A	FP236383.3	+/.	+/.	1:212286030	21:8394736	5'UTR	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000066027	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM119(10438),SELPLG(13137)	FP236383.3	./.	+/.	12:108608758	21:8442059	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
FIG4	AP003066.1	+/.	+/.	6:109865836	11:96847852	intron	intron	translocation/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000112367	ENSG00000254587	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078904	10:104479898	intron	intron	translocation	0	0	0	144	2216	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
SNX16	AP003390.1(4496),AP001994.1(77185)	-/.	./.	8:81842440	11:119744119	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
AL157931.2(14739),HMGA1P6(187436)	SBF1	./.	-/.	13:22946738	22:50468212	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000100241	.	.	upstream	upstream	mismatches(1)	.	.	.
SLCO1B1	METTL1P1(345733),RPP40P1(50413)	+/.	./.	12:21146484	X:25540940	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000134538	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117455	intron	intron	duplication/ITD	0	0	0	307	273	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02609	FIG4	-/.	+/.	1:90839715	6:109865836	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000233593	ENSG00000112367	.	.	upstream	downstream	mismatches(1)	.	.	.
CACHD1	TDRD12	+/.	+/.	1:64601453	19:32824139	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000158966	ENSG00000173809	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02788	FIG4	+/.	+/.	1:90839715	6:109865836	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000285532	ENSG00000112367	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02788	DPYSL3(24771),JAKMIP2-AS1(25155)	+/.	./.	1:90839715	5:147534839	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000285532	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006499.7(80993),AC110768.2(34424)	DPYSL3(24771),JAKMIP2-AS1(25155)	./.	./.	4:10376572	5:147534839	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC006499.7(80993),AC110768.2(34424)	AC013565.1	./.	+/.	4:10376572	15:89059781	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000260123	.	.	downstream	downstream	mismatches(1)	.	.	.
RCAN2	AL356131.1(170747),MTRNR2L9(162270)	-/.	./.	6:46469324	6:61412058	intron	intergenic	inversion	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172348	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
DLG2	FP236383.3	-/.	+/.	11:85484195	21:8438953	intron	intron	translocation	0	0	0	279	139	low	.	.	.	.	.	ENSG00000150672	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
AP003066.1	CACNG8	+/.	+/.	11:96847852	19:53972868	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000254587	ENSG00000142408	.	.	downstream	downstream	mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462434	intron	intron	translocation/5'-5'	0	0	0	154	12	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	low_entropy(1)	.	.	.
ANKMY2	DTNA	-/.	+/.	7:16603057	18:34571660	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000106524	ENSG00000134769	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02609	CACNG8	-/.	+/.	1:90839715	19:53972868	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000233593	ENSG00000142408	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02788	CACNG8	+/.	+/.	1:90839715	19:53972868	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000285532	ENSG00000142408	.	.	upstream	downstream	mismatches(1)	.	.	.
AC006499.7(80993),AC110768.2(34424)	CACNG8	./.	+/.	4:10376572	19:53972868	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000142408	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.7(728),5_8S_rRNA(539)	AP001599.1	./.	+/.	21:8256242	21:26914103	intergenic	intron	duplication	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	duplicates(12),mismatches(2)	.	.	.
AP003390.1(4496),AP001994.1(77185)	FP236383.3	./.	+/.	11:119744119	21:8414018	intergenic	intron	translocation	0	0	0	3583	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AC006499.7(80993),AC110768.2(34424)	SMAD3	./.	+/.	4:10376572	15:67126777	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000166949	.	.	downstream	upstream	mismatches(1)	.	.	.
AL513348.1(82080),RNU6-983P(53597)	FOXL2NB(31355),PRR23A(18617)	./.	./.	1:194434506	3:138985345	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003066.1	OSBPL8	+/.	-/.	11:96847852	12:76529750	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000254587	ENSG00000091039	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02788	OSBPL8	+/.	-/.	1:90839715	12:76529750	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000285532	ENSG00000091039	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006499.7(80993),AC110768.2(34424)	OSBPL8	./.	-/.	4:10376572	12:76529750	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000091039	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02788	KLHL32	+/.	+/.	1:90839715	6:97100445	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000285532	ENSG00000186231	.	.	upstream	upstream	mismatches(1)	.	.	.
BBS9	GS1-124K5.4	+/.	+/.	7:33425896	7:66495426	intron	exon	inversion/3'-3'	0	0	0	62	0	low	.	.	.	.	.	ENSG00000122507	ENSG00000237310	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
BTBD2	TMEM18-DT(23495),AC092159.1(3317)	-/-	./-	19:2034750	2:720877	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000133243	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP326651.1(1916),Y_RNA(175096)	DDB2	./.	+/.	9:65398288	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
AC006499.7(80993),AC110768.2(34424)	KLHL32	./.	+/.	4:10376572	6:97100445	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000186231	.	.	downstream	upstream	mismatches(1)	.	.	.
SMARCAL1	VPS53	+/+	-/+	2:216451038	17:621248	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	HepA-related_protein_(HARP)(100%),SNF2-related_domain(100%)|	.	.	ENSG00000138375	ENSG00000141252	.	.	downstream	upstream	mismatches(1)	.	.	.
STYXL2	AC104777.1	+/+	-/+	1:167128562	2:150617538	CDS	intron	translocation/5'-5'	0	0	0	0	45	low	.	.	Dual_specificity_phosphatase__catalytic_domain(100%)|	.	.	ENSG00000198842	ENSG00000232359	.	.	downstream	upstream	mismatches(1)	.	.	.
RAB42	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	1:28594883	8:49417336	3'UTR	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000188060	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396543	8:22396552	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
DLG2-AS2	DLG2	+/.	-/.	11:83724477	11:83724490	intron	intron	duplication/3'-3'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000255311	ENSG00000150672	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC133644.2	AC092944.1	+/.	+/.	2:87645546	3:157252490	intron	intron	translocation/3'-3'	0	0	0	3	26	low	.	.	.	.	.	ENSG00000284879	ENSG00000243176	.	.	upstream	upstream	low_entropy	.	.	.
AL078590.2	RFPL4AP7(64492),AC090155.2(79427)	-/.	./.	6:134573744	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000232310	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	APCDD1L	./.	-/.	8:49417336	20:58461814	intergenic	intron	translocation	0	0	0	30	0	low	.	.	.	.	.	.	ENSG00000198768	.	.	upstream	downstream	mismatches(1)	.	.	.
HOOK3	GAPDHP19(80401),BCORP1(46457)	+/.	./.	8:42903080	Y:19408974	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000168172	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	AC011509.2(7333),LINC01841(4920)	./.	./.	8:49417336	19:14300538	intergenic	intergenic	translocation	0	0	0	30	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL451061.1(18613),PLEKHG1(70970)	RFPL4AP7(64492),AC090155.2(79427)	./.	./.	6:150528913	8:49417336	intergenic	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PATJ	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	1:62142789	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000132849	.	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(4422),GPBP1(317)	RFPL4AP7(64492),AC090155.2(79427)	./.	./.	5:57173631	8:49417336	intergenic	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	Metazoa_SRP(6637),LINC02301(205812)	./.	./.	8:49417336	14:82436793	intergenic	intergenic	translocation	0	0	0	30	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ETV7-AS1	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	6:36386940	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000224666	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFLAR	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	2:201118617	8:49417336	5'UTR	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000003402	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8400584	MT:2220	intron	exon	translocation/3'-3'	0	0	0	7	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
TOMM40P4	MIR548AP(123825),AC104229.1(9162)	-/.	./.	2:131724154	15:85949555	exon	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000213222	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FCMR	AC090578.1	-/.	+/.	1:206921802	8:88485094	intron	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000162894	ENSG00000253553	.	.	upstream	downstream	mismatches(1)	.	.	.
AC109466.1	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	5:165074825	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000241956	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	ZNF702P	./.	-/.	8:49417336	19:53017001	intergenic	intron	translocation	0	0	0	30	0	low	.	.	.	.	.	.	ENSG00000242779	.	.	upstream	upstream	mismatches(1)	.	.	.
NKX6-2(1311),CFAP46(20934)	SDK2	./.	-/.	10:132787458	17:73390529	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000069188	.	.	downstream	downstream	mismatches(1)	.	.	.
AC024230.1	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	4:19581265	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000248515	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SYNPO	RFPL4AP7(64492),AC090155.2(79427)	+/.	./.	5:150612026	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000171992	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008060.4(7295),AC008060.5(3519)	RFPL4AP7(64492),AC090155.2(79427)	./.	./.	7:155409077	8:49417336	intergenic	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NOS1	KPNA3	-/.	-/.	12:117326664	13:49738945	intron	intron	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000089250	ENSG00000102753	.	.	downstream	downstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	ATP6V1G1P7(104121),AL136524.1(576841)	./.	./.	8:49417336	13:103549089	intergenic	intergenic	translocation	0	0	0	30	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC069288.1	AC005865.1	-/.	-/.	7:1874424	12:3300367	intron	exon	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000286192	ENSG00000250770	.	.	upstream	downstream	mismatches(1)	.	.	.
SH3GL1P1	PLEKHM1P1	+/.	-/.	17:32040756	17:64781161	exon	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000266777	ENSG00000214176	.	.	upstream	upstream	mismatches(1)	.	.	.
SLIT3	RFPL4AP7(64492),AC090155.2(79427)	-/.	./.	5:169053696	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000184347	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC1A2	AC091167.6	-/.	+/.	11:35290493	15:90270297	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000110436	ENSG00000275674	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MGA	FP236383.3	+/.	+/.	15:41660249	21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000174197	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
PAXBP1(52),C21orf62-AS1(256)	PAXBP1(78),C21orf62-AS1(230)	./.	./.	21:32771844	21:32771870	intergenic	intergenic	duplication/ITD	0	0	0	445	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
ANP32B	AC012060.1(92676),LINC02248(36443)	+/.	./.	9:97983495	15:26358594	5'UTR	intergenic	translocation	0	0	0	8	71	low	.	.	.	.	.	ENSG00000136938	.	.	.	upstream	downstream	mismatches(1)	.	.	.
BAG6	5_8S_rRNA(2077),FP236383.3(121633)	-/.	./.	6:31647292	21:8259010	intron	intergenic	translocation	0	0	0	5	5911	low	.	.	.	.	.	ENSG00000204463	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
MCTP1	MCTP1	-/.	-/.	5:94947578	5:94947591	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000175471	ENSG00000175471	.	.	upstream	downstream	duplicates(14),low_entropy(1)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	3:96618113	21:8217333	5'UTR	intron	translocation/3'-3'	0	0	0	75	4	low	.	.	.	.	.	ENSG00000269028	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	SMIM15P1(74040),PINCR(102558)	+/.	./.	21:8397815	X:43074436	intron	intergenic	translocation	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
NOS1AP	AL360175.1(7685),AL135908.1(58818)	+/.	./.	1:162228984	6:50528789	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000198929	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL356157.3(30449),AL356157.1(45338)	5_8S_rRNA(2077),FP236383.3(121633)	./.	./.	10:44545870	21:8259010	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
RNA5SP427(5143),AC007342.2(19305)	FP236383.3	./.	+/.	16:53342714	21:8442045	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
CCNB2	MTRNR2L10	+/.	-/.	15:59122737	X:55181913	intron	3'UTR	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000157456	ENSG00000256045	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
RNA5SP427(5143),AC007342.2(19305)	5_8S_rRNA(2077),FP236383.3(121633)	./.	./.	16:53342714	21:8259010	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
SLC18B1	SDK2	-/.	-/.	6:132798362	17:73390529	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000146409	ENSG00000069188	.	.	upstream	downstream	mismatches(1)	.	.	.
HTR1E	5_8S_rRNA(1686),FP236383.3(122024)	+/.	./.	6:86956265	21:8258619	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000168830	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TOMM40P4	BCAS3	-/.	+/.	2:131724153	17:60773878	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000213222	ENSG00000141376	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
BCAS3	TSPEAR(37704),UBE2G2(19304)	+/.	./.	17:60773878	21:44749276	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141376	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SIM1	BCAS3	-/.	+/.	6:100446699	17:60773878	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112246	ENSG00000141376	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
HOXD3	ARHGEF18	+/.	+/.	2:176158426	19:7469138	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000128652	ENSG00000104880	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK5R2	BCAS3	+/.	+/.	2:218959793	17:60773878	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171450	ENSG00000141376	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC092999.1(88054),IQCJ-SCHIP1(2360)	TMEM68	./.	-/.	3:158959875	8:55769425	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000167904	.	.	upstream	downstream	mismatches(1)	.	.	.
TOMM40P1	BCAS3	+/.	+/.	14:19267205	17:60773878	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000277156	ENSG00000141376	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TOMM40P1	MIR548AP(123825),AC104229.1(9162)	+/.	./.	14:19267204	15:85949555	exon	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000277156	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CRACDL	AC006499.8(7831),RAF1P1(8860)	-/.	./.	2:98875143	4:10246066	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196872	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BCAS3	TOMM40P2	+/.	-/.	17:60773878	22:15855153	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141376	ENSG00000215270	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL158151.3	FP236383.3	+/.	+/.	9:129178735	21:8442059	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000235007	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR548AP(123825),AC104229.1(9162)	TOMM40P2	./.	-/.	15:85949555	22:15855154	intergenic	exon	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000215270	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1374784	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
GPATCH2L	Z93403.1	+/.	+/.	14:76217996	X:42277880	intron	intron	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000089916	ENSG00000231772	.	.	downstream	upstream	mismatches(1)	.	.	.
AL589182.2	BCAS3	-/.	+/.	14:19132800	17:60773878	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278594	ENSG00000141376	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC23A1	FP236383.3	-/.	+/.	5:139376762	21:8397817	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000170482	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC01377(90372),LINC01019(85405)	TAMALIN(977),NR4A1(5966)	./.	./.	5:3271859	12:52016866	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL589182.2	MIR548AP(123825),AC104229.1(9162)	-/.	./.	14:19132801	15:85949555	exon	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	ENSG00000278594	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IDH2	BCAS3	-/.	+/.	15:90102334	17:60773878	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182054	ENSG00000141376	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	DMRTC1	+/.	-/.	21:8442049	X:72887450	intron	intron	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000269502	.	.	upstream	upstream	mismatches(1)	.	.	.
AC011246.1	Z93403.1	+/.	+/.	2:122006450	X:42277880	intron	intron	translocation/3'-3'	0	0	0	0	31	low	.	.	.	.	.	ENSG00000286481	ENSG00000231772	.	.	upstream	upstream	mismatches(1)	.	.	.
AC064801.2	C2CD4C	+/.	-/.	18:62551947	19:408579	exon	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000279236	ENSG00000183186	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
ZNF10	5_8S_rRNA(2081),FP236383.3(121629)	+/.	./.	12:133131392	21:8259014	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000256223	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262578	11:88092332	intron	intron	translocation	0	0	0	2136	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
LINC02345	KLK15	+/.	-/.	15:38015651	19:50835927	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259225	ENSG00000174562	.	.	upstream	downstream	mismatches(1)	.	.	.
ZFYVE28	LAMA5	-/.	-/.	4:2271433	20:62337135	intron	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000159733	ENSG00000130702	.	.	upstream	upstream	mismatches(1)	.	.	.
BICC1	FP671120.4	+/.	+/.	10:58688002	21:8214782	intron	intron	translocation	0	0	0	87	5263	low	.	.	.	.	.	ENSG00000122870	ENSG00000278996	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC026786.1	5_8S_rRNA(2081),FP236383.3(121629)	+/.	./.	12:133131392	21:8259014	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000256825	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	DMRTC1	+/.	-/.	21:8397819	X:72887450	intron	intron	translocation	0	0	0	6042	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000269502	.	.	upstream	upstream	mismatches(1)	.	.	.
ACMSD	ACMSD	+/.	+/.	2:134845513	2:134845524	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000153086	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AP003390.1(4387),AP001994.1(77294)	AP003390.1(4395),AP001994.1(77286)	./.	./.	11:119744010	11:119744018	intergenic	intergenic	duplication/ITD	0	0	0	3458	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
RACGAP1	AC012060.1(92676),LINC02248(36443)	-/.	./.	12:49980140	15:26358594	intron	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000161800	.	.	.	downstream	downstream	duplicates(3),mismatches(1)	.	.	.
URI1	FP671120.4	+/.	+/.	19:30010965	21:8214784	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000105176	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00303(15347),AL592146.2(7921)	ZNF274	./.	+/.	1:204056612	19:58200775	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000171606	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS23P5(103259),NENFP3(199733)	FP236383.3	./.	+/.	5:13353921	21:8397819	intergenic	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NOTCH2	TMPO-AS1	-/.	-/.	1:120001336	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000134250	ENSG00000257167	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF10	FP671120.4	+/.	+/.	12:133131392	21:8214785	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000256223	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	AP001823.1(3448),ELMOD1(740)	+/.	./.	10:104396370	11:107590351	intron	intergenic	translocation	0	0	0	558	1914	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	upstream	low_entropy	.	.	.
LETM1	HTR3A(42048),ZBTB16(27350)	-/.	./.	4:1841521	11:114032361	CDS	intergenic	translocation	0	0	0	32	0	low	.	.	.	.	.	ENSG00000168924	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ENPP6	GTF2IP11(6696),AC109635.3(60562)	-/.	./.	4:184122405	11:50109594	intron	intergenic	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	.	.	.	upstream	downstream	mismatches(2)	.	.	.
AC026786.1	FP671120.4	+/.	+/.	12:133131392	21:8214785	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000256825	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM124A(21351),SERPINE3(30183)	AP005264.4	./.	+/.	13:51305590	18:12215239	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000267733	.	.	downstream	upstream	mismatches(1)	.	.	.
DNM1P51	AC091804.1(832267),ALCAM(31376)	-/-	./+	15:84408448	3:105335533	exon	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000235370	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AC026786.1	FP236383.3	+/.	+/.	12:133131392	21:8442049	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000256825	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	NDUFB9P3(84563),LINC01608(5539)	./.	./.	6:168345669	8:110894457	intergenic	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),mismatches(6)	.	.	.
STX6	STX6	-/-	-/-	1:181023105	1:181023120	5'UTR	5'UTR	duplication/ITD	0	0	0	4	0	low	.	.	|SNARE_domain(100%),Syntaxin_6__N-terminal(100%)	.	.	ENSG00000135823	ENSG00000135823	.	.	upstream	downstream	low_entropy(3)	.	.	.
CCDC91	CHTF18	+/.	+/.	12:28556284	16:795868	intron	intron	translocation/5'-5'	0	0	0	12	5	low	.	.	.	.	.	ENSG00000123106	ENSG00000127586	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
TLE4	CCDC91	+/.	+/.	9:79572888	12:28556283	intron	intron	translocation/5'-5'	0	0	0	12	12	low	.	.	.	.	.	ENSG00000106829	ENSG00000123106	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
FBXW5	TGM3(7994),TGM6(31828)	-/.	./.	9:136943086	20:2349073	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMC4	CCDC91	-/-	+/-	19:54168416	12:28556284	exon	intron	translocation/5'-5'	0	0	0	4	12	low	.	.	.	.	.	ENSG00000167608	ENSG00000123106	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
TLE4	HIPK3	+/.	+/.	9:79572888	11:33295287	intron	intron	translocation/5'-5'	0	0	0	12	3	low	.	.	.	.	.	ENSG00000106829	ENSG00000110422	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
TEX264	AP000445.2(7148),TMA16P1(28036)	+/.	./.	3:51674814	11:58768201	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164081	.	.	.	upstream	upstream	mismatches(1)	.	.	.
H3C10	GCNT1	+/.	+/.	6:27810928	9:76571859	3'UTR	intron	translocation/3'-3'	0	0	0	0	38	low	.	.	.	.	.	ENSG00000278828	ENSG00000187210	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TLE4	FANK1	+/.	+/.	9:79572888	10:125956203	intron	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	ENSG00000106829	ENSG00000203780	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
TMC4	AC017091.1	-/-	-/+	19:54168416	4:58783792	exon	intron	translocation/5'-5'	0	0	0	4	12	low	.	.	.	.	.	ENSG00000167608	ENSG00000251339	.	.	upstream	upstream	duplicates(2),homopolymer(1)	.	.	.
AC017091.1	ALOX15(16236),PELP1(11244)	-/.	./.	4:58783792	17:4658530	intron	intergenic	translocation	0	0	0	12	5	low	.	.	.	.	.	ENSG00000251339	.	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021213	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
AC104009.1	LRRC4C	-/.	-/.	11:22312136	11:41021153	intron	intron	deletion	0	0	0	9	632	low	.	.	.	.	.	ENSG00000254768	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
AC012533.1	TLE4	+/.	+/.	8:80923078	9:79572888	intron	intron	translocation	0	0	0	12	12	low	.	.	.	.	.	ENSG00000286763	ENSG00000106829	.	.	upstream	downstream	duplicates(2),homopolymer(1)	.	.	.
AC078882.1(365279),UBE2V1P14(40309)	MT-RNR2	./.	+/.	2:142503109	MT:2225	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02745	RPL10L(115581),MDGA2(72267)	-/.	./.	11:42090408	14:46767362	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000255300	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003066.1	CHTF18	+/.	+/.	11:96955789	16:795868	intron	intron	translocation/5'-5'	0	0	0	12	5	low	.	.	.	.	.	ENSG00000254587	ENSG00000127586	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
FREM2	FREM2	+/.	+/.	13:38813459	13:38813518	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000150893	ENSG00000150893	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC090809.1	MT-RNR2	-/.	+/.	8:36691820	MT:2211	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000253363	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02609	AC009997.1(47927),NEDD4(32228)	-/.	./.	1:90815059	15:55794694	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000233593	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC062004.1(83779),AC084706.1(527032)	FP671120.4	./.	+/.	8:77621069	21:8214800	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
SLC9A3R2	FP671120.4	+/.	+/.	16:2028847	21:8214801	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000065054	ENSG00000278996	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
AC069545.1(570622),ZWINT(39697)	FP236383.3	./.	+/.	10:56317530	21:8442064	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
5_8S_rRNA(2085),FP236383.3(121625)	FP236383.3	./.	+/.	21:8259018	21:8437078	intergenic	intron	inversion	0	0	0	5911	55	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
DPH6-DT	5_8S_rRNA(2096),FP236383.3(121614)	+/.	./.	15:35727914	21:8259029	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000248079	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC069545.1(570622),ZWINT(39697)	5_8S_rRNA(2096),FP236383.3(121614)	./.	./.	10:56317530	21:8259029	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
EYA4	XRCC6P2(65223),MAMLD1(63303)	+/.	./.	6:133480741	X:150298119	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000112319	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC062004.1(83779),AC084706.1(527032)	5_8S_rRNA(2096),FP236383.3(121614)	./.	./.	8:77621069	21:8259029	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
FP236383.4	UBE2V1P3(94050),AC010737.1(75725)	-/-	./+	21:8393597	Y:3960772	exon	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000280614	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CFAP58	SORCS3	+/.	+/.	10:104396370	10:104794628	intron	intron	duplication	0	0	0	558	13	low	.	.	.	.	.	ENSG00000120051	ENSG00000156395	.	.	upstream	downstream	low_entropy(1)	.	.	.
UBE2W	SMG1	-/.	-/.	8:73820121	16:18892386	intron	intron	translocation	0	0	0	164	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000157106	.	.	downstream	upstream	duplicates(2),mismatches(2)	.	.	.
SLC9A3R2	5_8S_rRNA(2097),FP236383.3(121613)	+/.	./.	16:2028847	21:8259030	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000065054	.	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
WNT5A	FP671120.4	-/.	+/.	3:55486456	21:8214790	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000114251	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC069545.1(570622),ZWINT(39697)	FP236383.3	./.	+/.	10:56317530	21:8397834	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC062004.1(83779),AC084706.1(527032)	FP236383.3	./.	+/.	8:77621069	21:8397834	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
ETNK2	FP671120.4	-/-	+/+	1:204151713	21:8214792	CDS	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000143845	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC9A3R2	FP236383.3	+/.	+/.	16:2028847	21:8397835	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000065054	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
IGHVIII-38-1(920),IGHV4-39(2492)	GPC3	./.	-/.	14:106419219	X:133661640	intergenic	intron	translocation	0	0	0	191	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
RNU7-55P	FP671120.4	-/-	+/+	8:9072505	21:8214800	exon	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000239078	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
DPH6-DT	FP671120.4	+/.	+/.	15:35727914	21:8214800	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000248079	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
CCNT2-AS1	CCNT2-AS1	-/.	-/.	2:134845516	2:134845525	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000224043	.	.	upstream	downstream	low_entropy(1)	.	.	.
SST(561),RTP2(27304)	AC006041.1(223036),CRPPA(22129)	./.	./.	3:187670955	7:16065396	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TADA3	MIR663AHG	-/.	-/.	3:9792515	20:26208397	5'UTR	exon	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000171148	ENSG00000227195	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARHGAP17	5_8S_rRNA(2095),FP236383.3(121615)	-/.	./.	16:24994693	21:8259028	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000140750	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
CSK(8121),LMAN1L(1397)	ADNP	./.	-/.	15:74811319	20:50931007	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101126	.	.	downstream	downstream	homopolymer(1)	.	.	.
AL591519.1	RGN	+/.	+/.	6:93664791	X:47086735	intron	intron	translocation	0	0	0	15	40	low	.	.	.	.	.	ENSG00000287683	ENSG00000130988	.	.	downstream	upstream	duplicates(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8220291	21:8397826	intron	intron	deletion/read-through	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SNAP47	TSPOAP1-AS1	+/.	+/.	1:227740052	17:58385559	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143740	ENSG00000265148	.	.	upstream	downstream	mismatches(1)	.	.	.
TADA3	FP236383.3	-/.	+/.	3:9792515	21:8390946	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171148	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
BOP1	FP236383.3	-/.	+/.	8:144273174	21:8390945	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261236	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TADA3	FP236383.3	-/.	+/.	3:9792515	21:8435133	5'UTR	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000171148	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DUX4L29(1693),DUX4L10(355)	DUX4L29(1785),DUX4L10(263)	./.	./.	10:133742977	10:133743069	intergenic	intergenic	duplication/ITD	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
ARPC4	FP236383.3	+/+	+/+	3:9792515	21:8435133	5'UTR	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000241553	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL118558.1	FP236383.3	-/.	+/.	14:102063231	21:8435132	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000258959	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
BOP1	MIR663AHG	-/.	-/.	8:144273174	20:26208398	intron	exon	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000261236	ENSG00000227195	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SAMD3	LINC01445	-/.	+/.	6:130180681	7:54383890	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164483	ENSG00000231427	.	.	upstream	upstream	duplicates(2),mismatches(3)	.	.	.
TADA3	FP671120.3(1959),FP671120.7(2484)	-/.	./.	3:9792515	21:8252108	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171148	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
U3(104494),GPC1(41726)	AC044802.2	./.	-/.	2:240393937	16:66850329	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000258122	.	.	upstream	upstream	mismatches(1)	.	.	.
BOP1	FP671120.3(1958),FP671120.7(2485)	-/.	./.	8:144273174	21:8252107	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000261236	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL118558.1	FP671120.4	-/.	+/.	14:102063231	21:8207898	intron	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	ENSG00000258959	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47233105	21:8395072	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
MLYCD	FP236383.3	+/+	+/+	16:83922179	21:8442060	3'UTR	intron	translocation	0	0	0	0	5962	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL035079.1(18426),CIR1P3(7505)	GAPDHP16(18527),AF127577.4(25054)	./.	./.	11:34423375	21:14793789	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8212039	21:8394736	intron	intron	inversion/3'-3'	0	0	0	20	154	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8212039	21:8438949	intron	intron	inversion/3'-3'	0	0	0	20	139	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DDB2	FP671120.4	+/.	+/.	11:47233105	21:8212037	intron	intron	translocation	0	0	0	341	20	low	.	.	.	.	.	ENSG00000134574	ENSG00000278996	.	.	downstream	upstream	duplicates(1)	.	.	.
SORCS1(37834),RNA5SP326(259192)	AC087311.1(131560),SYT10(248924)	./.	./.	10:107202368	12:33125314	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.7(733),5_8S_rRNA(534)	+/.	./.	21:8211701	21:8256247	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PRKG1	AP001599.1	+/.	+/.	10:51731991	21:26914103	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000185532	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214403	21:8438953	intron	intron	inversion/3'-3'	0	0	0	8	139	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394736	21:8439289	intron	intron	inversion/3'-3'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL033529.1	ATP6V0D2	+/.	+/.	1:32507193	8:86058813	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	ENSG00000147614	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	5:20674827	5:20674836	intron	intron	duplication/ITD	0	0	0	37	33	low	.	.	.	.	.	ENSG00000251629	ENSG00000251629	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	AC004882.1(46),CABP7(98)	+/.	./.	21:8444184	22:29719905	intron	intergenic	translocation	0	0	0	214	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01331(79560),ENC1(10870)	FP236383.3	./.	+/.	5:74616536	21:8397830	intergenic	intron	translocation	0	0	0	10	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7(393),5_8S_rRNA(874)	FP236383.3	./.	+/.	21:8255907	21:8439289	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01854(94049),PPIAP65(128400)	HIVEP2	./.	-/.	2:129367897	6:142946392	intergenic	intron	translocation	0	0	0	9	63	low	.	.	.	.	.	.	ENSG00000010818	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ARID1B(12702),TMEM242(65544)	FP236383.3	./.	+/.	6:157223481	21:8394737	intergenic	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48511),TPT1P1(55423)	./.	./.	2:128340558	21:31784918	intergenic	intergenic	translocation	0	0	0	35	191	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
DNAH14	AP003390.1(4482),AP001994.1(77199)	+/.	./.	1:225078904	11:119744105	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP003390.1(4496),AP001994.1(77185)	./.	./.	3:137274341	11:119744119	intergenic	intergenic	translocation	0	0	0	71	3583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8438949	21:8439289	intron	intron	inversion/3'-3'	0	0	0	139	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.10(126826),RPSAP68(8090)	+/.	./.	21:8394736	21:8595457	intron	intergenic	inversion	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7(393),5_8S_rRNA(874)	FP236383.10(126826),RPSAP68(8090)	./.	./.	21:8255907	21:8595457	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PDPN	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	1:13583783	21:8255907	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162493	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRIM49C	LINC01484	+/+	-/+	11:90035606	5:173742753	CDS	intron	translocation/5'-5'	0	0	0	0	14	low	.	.	B-box_zinc_finger(100%),zinc_finger_of_C3HC4-type__RING(100%)|	.	.	ENSG00000204449	ENSG00000253686	.	.	downstream	upstream	mismatches(1)	.	.	.
AL591122.1(12914),ZBTB40(49442)	FP671120.4	./.	+/.	1:22379396	21:8211701	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RAMP3(65696),AC073968.2(16683)	AC107892.1(122113),AC087399.1(217549)	./.	./.	7:45251998	18:78263000	intergenic	intergenic	translocation	0	0	0	87	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	ARL2	./.	+/.	3:35255769	11:65014891	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000213465	.	.	downstream	downstream	mismatches(1)	.	.	.
FXNP1(22675),NRXN3(87420)	FXNP1(22774),NRXN3(87321)	./.	./.	14:78082953	14:78083052	intergenic	intergenic	duplication/ITD	0	0	0	336	396	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
PPP2R5A	FP236383.3	+/.	+/.	1:212286030	21:8438949	5'UTR	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000066027	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
PPP2R5A	DDB2	+/.	+/.	1:212286028	11:47233105	5'UTR	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000066027	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8394736	21:8395074	intron	intron	inversion/3'-3'	0	0	0	154	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	4:94902250	4:94902265	intron	intron	duplication/ITD	0	0	0	345	345	low	.	.	.	.	.	ENSG00000138696	ENSG00000138696	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
LINC02782(112132),AL139823.1(98897)	AC012501.2(18059),DNAJA1P2(150103)	./.	./.	1:5203031	2:153611347	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
FP671120.7(393),5_8S_rRNA(874)	FP236383.3	./.	+/.	21:8255907	21:8395074	intergenic	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
OXGR1(108471),LINC00456(65550)	MT-RNR2	./.	+/.	13:97103201	MT:2230	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	Z97192.4(6662),AL023802.1(46423)	./.	./.	2:53114408	22:49671630	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC004825.1(21665),AC004825.2(25563)	AC004825.1(21736),AC004825.2(25492)	./.	./.	14:70881094	14:70881165	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396370	10:104396383	intron	intron	duplication/ITD	0	0	0	558	544	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RNU6-248P(2089),RNU6-261P(351959)	FP671120.4	./.	+/.	6:76095029	21:8214397	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	NAA11	-/-	-/-	3:96617427	4:79311395	5'UTR	intron	translocation	0	0	0	70	6	low	.	.	.	.	.	ENSG00000269028	ENSG00000156269	.	.	upstream	downstream	mismatches	.	.	.
OR2K2	LTBP2	-/.	-/.	9:111329302	14:74533689	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000171133	ENSG00000119681	.	.	downstream	downstream	mismatches(1)	.	.	.
AC026202.1(36559),AC087857.1(669522)	FP671120.4	./.	+/.	3:5293320	21:8218870	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02346	LINC02346	+/.	+/.	15:26000037	15:26000116	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000206187	ENSG00000206187	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC016642.1	IFT46	-/.	-/.	5:58801228	11:118566325	intron	intron	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000248475	ENSG00000118096	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00351(70065),AL356413.1(79302)	DAOA-AS1	./.	-/.	13:85614635	13:105504678	intergenic	intron	inversion	0	0	0	5	3	low	.	.	.	.	.	.	ENSG00000232307	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGAP30	AP000255.1(48407),TPT1P1(55527)	-/.	./.	1:161059767	21:31784814	intron	intergenic	translocation	0	0	0	31	90	low	.	.	.	.	.	ENSG00000186517	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
RUFY4(18120),CXCR2(16588)	AC016820.1(173232),ZMIZ1-AS1(73074)	./.	./.	2:218108701	10:78870254	intergenic	intergenic	translocation	0	0	0	193	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC004980.1	AC004980.1	+/.	+/.	7:76580348	7:76580414	intron	intron	duplication/ITD	0	0	0	47	47	low	.	.	.	.	.	ENSG00000205485	ENSG00000205485	.	.	upstream	downstream	low_entropy(2)	.	.	.
RAB44(1124),Z85996.1(2742)	RAB44(1190),Z85996.1(2676)	./.	./.	6:36734308	6:36734374	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP003170.2	PLEKHM1P1	+/.	-/.	11:113789588	17:64781161	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255870	ENSG00000214176	.	.	upstream	upstream	mismatches(1)	.	.	.
COMETT	COMETT	-/.	-/.	7:116638067	7:116638076	intron	intron	duplication/ITD	0	0	0	63	0	low	.	.	.	.	.	ENSG00000231210	ENSG00000231210	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
HIVEP2	DMRT1	-/.	+/.	6:142946391	9:962722	intron	intron	translocation	0	1	0	63	2	low	.	.	.	.	.	ENSG00000010818	ENSG00000137090	.	.	downstream	downstream	duplicates(1),min_support	.	.	.
MAP4K4	IL20RB(263256),RNA5SP142(243793)	+/.	./.	2:101785697	3:137274341	intron	intergenic	translocation	0	0	0	496	71	low	.	.	.	.	.	ENSG00000071054	.	.	.	upstream	upstream	mismatches	.	.	.
AL590824.1(655763),TENT5A(278487)	FP236383.3	./.	+/.	6:81212952	21:8399899	intergenic	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	LINC01331(79559),ENC1(10871)	./.	./.	2:240393940	5:74616535	intergenic	intergenic	translocation	0	0	0	357	10	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	AC010451.1	./.	-/.	2:240393940	5:4990796	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000250481	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	LINC01020	./.	+/.	2:240393940	5:4990796	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000215231	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	RNU4-83P(49966),RPS26P6(13945)	./.	./.	2:240393940	8:100881826	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RUFY4(18117),CXCR2(16591)	U3(104497),GPC1(41723)	./.	./.	2:218108698	2:240393940	intergenic	intergenic	deletion	0	0	0	0	357	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(2)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	FP236383.3	./.	+/.	2:128443843	21:8397832	intergenic	intron	translocation	0	0	0	7	5614	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
CCDC178	XRCC6P2(65223),MAMLD1(63303)	-/.	./.	18:33420789	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000166960	.	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	FP671120.4	./.	+/.	2:128443843	21:8214798	intergenic	intron	translocation	0	0	0	7	293	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAH14	AP003390.1(4484),AP001994.1(77197)	+/.	./.	1:225078904	11:119744107	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
IL20RB(263256),RNA5SP142(243793)	AP003390.1(4498),AP001994.1(77183)	./.	./.	3:137274341	11:119744121	intergenic	intergenic	translocation	0	0	0	71	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
Y_RNA(92916),RNA5SP103(1238)	FP236383.3	./.	+/.	2:128443843	21:8442062	intergenic	intron	translocation	0	0	0	7	6003	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01004	AC012060.1(92676),LINC02248(36443)	-/.	./.	7:105012798	15:26358594	intron	intergenic	translocation	0	0	0	4	71	low	.	.	.	.	.	ENSG00000228393	.	.	.	upstream	downstream	mismatches(1)	.	.	.
U3(104497),GPC1(41723)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	2:240393940	21:8259024	intergenic	intergenic	translocation	0	0	0	357	5782	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003071.5	5_8S_rRNA(2089),FP236383.3(121621)	+/.	./.	11:69104798	21:8259022	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000287725	.	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	5_8S_rRNA(2094),FP236383.3(121616)	./.	./.	2:128443843	21:8259027	intergenic	intergenic	translocation	0	0	0	7	5782	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RN7SL423P(28136),AC009313.1(142620)	AC092066.1(2375),CBLC(10030)	./.	./.	2:160905986	19:44767839	intergenic	intergenic	translocation	0	0	0	0	12	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP001652.1	FP236383.3	-/.	+/.	11:58919736	21:8442048	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000255523	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
FP671120.7(391),5_8S_rRNA(876)	FP236383.3	./.	+/.	21:8255905	21:8442894	intergenic	intron	deletion/read-through	0	0	0	74	60	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(5),mismatches(5)	.	.	.
U3(104497),GPC1(41723)	B3GALNT1	./.	-/.	2:240393940	3:161095877	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000169255	.	.	upstream	downstream	mismatches(1)	.	.	.
RUFY4(18121),CXCR2(16587)	LINC02530(23829),PHACTR1(107321)	./.	./.	2:218108702	6:12609233	intergenic	intergenic	translocation	0	0	0	193	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
SLC41A2	MT-RNR2	-/.	+/.	12:104952398	MT:2226	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000136052	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
NAALADL2	WDR1(4340),AC093664.1(22078)	+/.	./.	3:175089638	4:10121289	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177694	.	.	.	upstream	downstream	mismatches(1)	.	.	.
JOSD2	FP236383.3	-/.	+/.	19:50511029	21:8394736	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000161677	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FXNP1(22671),NRXN3(87424)	FXNP1(22684),NRXN3(87411)	./.	./.	14:78082949	14:78082962	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
DNMBP	ACTN1-AS1	-/.	+/.	10:99948205	14:68979860	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000107554	ENSG00000259062	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
FXNP1(22669),NRXN3(87426)	FXNP1(22684),NRXN3(87411)	./.	./.	14:78082947	14:78082962	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),merge_adjacent	.	.	.
GLI2	AC022709.1(43512),AC021393.1(109301)	+/.	./.	2:120797221	8:59937454	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000074047	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
UBE2W	ABCD1	-/.	+/.	8:73820103	X:153725239	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000101986	.	.	upstream	upstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262471	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
LETM1	CACNA1H	-/.	+/.	4:1841520	16:1190969	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168924	ENSG00000196557	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FH(8961),KMO(3418)	FH(9022),KMO(3357)	./.	./.	1:241528716	1:241528777	intergenic	intergenic	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
FXNP1(22679),NRXN3(87416)	FXNP1(22688),NRXN3(87407)	./.	./.	14:78082957	14:78082966	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1)	.	.	.
AC009299.2	AC027237.3	-/.	-/.	2:161267670	15:69399191	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000235724	ENSG00000259426	.	.	downstream	downstream	mismatches(1)	.	.	.
THOC3	THOC3	-/.	-/.	5:175967559	5:175967573	intron	intron	duplication/ITD	0	0	0	67	67	low	.	.	.	.	.	ENSG00000051596	ENSG00000051596	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
LINC02345	AC011523.1	+/.	+/.	15:38015651	19:50835927	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259225	ENSG00000267968	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093909.4(25705),AC122138.1(146488)	LINC02345	./.	+/.	4:188844227	15:38015651	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000259225	.	.	downstream	upstream	mismatches(1)	.	.	.
DNMT3A	SFTPC	-/-	+/+	2:25233118	8:22157588	3'UTR	exon	translocation	0	0	0	2	1	low	.	.	C-5_cytosine-specific_DNA_methylase(100%),Cysteine_rich_ADD_domain_in_DNMT3(100%),PWWP_domain(100%)|BRICHOS_domain(100%),Surfactant_protein_C__N_terminal_propeptide(100%)	.	.	ENSG00000119772	ENSG00000168484	.	.	upstream	upstream	mismatches(1)	.	.	.
MSANTD3-TMEFF1	AL008718.2(4880),AL008718.1(7134)	+/.	./.	9:100493434	22:45268465	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000251349	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC52A1	FP671120.4	-/.	+/.	17:5035640	21:8214783	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000132517	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC106795.1	ZNF462	+/.	+/.	5:177876239	9:106877174	intron	intron	translocation	0	0	0	68	3	low	.	.	.	.	.	ENSG00000170089	ENSG00000148143	.	.	downstream	upstream	duplicates(1)	.	.	.
RNA5SP378(9750),RNU6-1017P(4079)	LINC02345	./.	+/.	12:131811184	15:38015662	intergenic	intron	translocation	0	0	0	1	5	low	.	.	.	.	.	.	ENSG00000259225	.	.	downstream	downstream	mismatches(1)	.	.	.
MRPS18CP7(82631),RNA5SP505(114)	MRPS18CP7(82730),RNA5SP505(15)	./.	./.	X:53908940	X:53909039	intergenic	intergenic	duplication/ITD	0	0	0	11	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(9),low_entropy(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749076	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	LINC02620	-/.	-/.	6:42262464	10:104479909	intron	intron	translocation	0	0	0	2363	1761	low	.	.	.	.	.	ENSG00000124496	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
TP53I11	AC068858.1	-/-	+/-	11:44933675	11:45043656	3'UTR	intron	deletion/read-through/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000175274	ENSG00000287984	.	.	downstream	upstream	mismatches(1)	.	.	.
C12orf45	ALDH1L2	+/.	-/.	12:105046145	12:105046190	intron	intron	duplication/3'-3'	0	0	0	353	353	low	.	.	.	.	.	ENSG00000151131	ENSG00000136010	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AC140658.1	LINC00273(842),RNA5-8SP2(2081)	-/.	./.	16:33974844	16:34160878	exon	intergenic	deletion/read-through	0	1	0	1	3	low	.	.	.	.	.	ENSG00000205452	.	.	.	downstream	upstream	non_coding_neighbors	.	.	.
STXBP6	FP671120.4	-/.	+/.	14:24854249	21:8218870	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168952	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396559	8:22396568	intron	intron	duplication/ITD	0	0	0	229	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(3),low_entropy(4)	.	.	.
GTF2IP20	5_8S_rRNA(2087),FP236383.3(121623)	-/.	./.	1:223991979	21:8259020	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000272645	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ARID1B(12702),TMEM242(65544)	FP671120.4	./.	+/.	6:157223481	21:8211702	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
HMGA2	HMGA2	+/+	+/+	12:65824767	12:65824714	5'UTR	5'UTR	duplication/ITD	0	0	0	79	79	low	.	.	|AT_hook_motif(100%)	.	.	ENSG00000149948	ENSG00000149948	.	.	downstream	upstream	duplicates(3),merge_adjacent	.	.	.
AC007405.3	NACC2	+/.	-/.	2:170768859	9:136019086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000239467	ENSG00000148411	.	.	downstream	upstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	14:99796191	14:99796202	intron	intron	duplication/ITD	0	0	0	348	348	low	.	.	.	.	.	ENSG00000066629	ENSG00000066629	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC233263.7(1130434),AC233266.1(80345)	AC027612.2	./.	-/.	2:91498133	2:91686303	intergenic	intron	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000230572	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL158828.1(81091),AL353613.1(62449)	FP236383.3	./.	+/.	9:86569698	21:8442064	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC097459.1	AC097459.1	+/.	+/.	4:100459179	4:100459188	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000286150	ENSG00000286150	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
EMCN	AC097459.1	-/.	+/.	4:100459169	4:100459184	intron	intron	duplication/5'-5'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000164035	ENSG00000286150	.	.	upstream	downstream	duplicates(1)	.	.	.
AP002961.1	FP236383.3	-/.	+/.	11:103278165	21:8441659	intron	intron	translocation/3'-3'	0	0	0	12	546	low	.	.	.	.	.	ENSG00000285878	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NXF2(27561),AC235565.2(6112)	NXF2(27659),AC235565.2(6014)	./.	./.	X:102354283	X:102354381	intergenic	intergenic	duplication/ITD	0	0	0	55	71	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(23),low_entropy(7)	.	.	.
ZNF211	CRYAA(148325),LINC00322(1287)	+/.	./.	19:57633012	21:43321130	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000121417	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MFSD9	FP236383.3	-/.	+/.	2:102719363	21:8444134	intron	intron	translocation/3'-3'	0	0	0	4	19	low	.	.	.	.	.	ENSG00000135953	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC097459.1	EMCN	+/.	-/.	4:100459169	4:100459184	intron	intron	duplication/3'-3'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000286150	ENSG00000164035	.	.	upstream	downstream	duplicates(1)	.	.	.
DHFR	TAFA5	-/.	+/.	5:80650267	22:48741205	intron	intron	translocation/3'-3'	0	0	0	68	0	low	.	.	.	.	.	ENSG00000228716	ENSG00000219438	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
IFNGR1(26704),OLIG3(246046)	SFRP4(58886),STARD3NL(93664)	./.	./.	6:137246153	7:38084581	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RBSN(19181),AC090954.1(13504)	AC122688.4(18591),TMEM132B(3327)	./.	./.	3:15118344	12:125183509	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01691(3048773),AC242852.1(18713883)	RCAN2	./.	-/.	1:124629297	6:46469323	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172348	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AGRN	LINC02062	+/.	+/.	1:1041773	5:98929379	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000248489	.	.	downstream	upstream	mismatches(1)	.	.	.
SEMA6A	SEMA6A	-/-	-/-	5:116467883	5:116467900	5'UTR	5'UTR	duplication/ITD	0	0	0	5	0	low	.	.	Plexin_repeat(100%),Sema_domain(100%)|	.	.	ENSG00000092421	ENSG00000092421	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GSN	AL359644.1	+/.	+/.	9:121299757	9:121412757	intron	intron	deletion/read-through	0	0	0	0	1	low	.	.	.	.	.	ENSG00000148180	ENSG00000227355	.	.	downstream	upstream	mismatches(1)	.	.	.
ANAPC4(33399),AC133963.2(20620)	FP236383.3	./.	+/.	4:25451897	21:8438969	intergenic	intron	translocation	0	0	0	4	159	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches	.	.	.
PITRM1	AL355361.1(207169),AC026396.1(585)	-/-	./-	10:3172823	10:2935436	5'UTR	intergenic	deletion/read-through	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107959	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FUT9	RPL24P9(223683),AC074035.1(449956)	+/.	./.	6:96197690	X:4177244	intron	intergenic	translocation	0	0	0	1	22	low	.	.	.	.	.	ENSG00000172461	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL627316.1	AP005436.1	-/.	-/.	1:90392879	11:88092448	intron	intron	translocation/3'-3'	0	0	0	311	718	low	.	.	.	.	.	ENSG00000287372	ENSG00000255102	.	.	downstream	downstream	low_entropy	.	.	.
MTRNR2L3	RPL24P9(223684),AC074035.1(449955)	-/.	./.	20:57358687	X:4177245	3'UTR	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000256222	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	Z99497.2(139327),AL589669.1(77252)	+/.	./.	21:8397437	X:147103812	intron	intergenic	translocation	0	0	0	543	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MTRNR2L6	RPL24P9(223684),AC074035.1(449955)	+/.	./.	7:142667591	X:4177245	3'UTR	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000270672	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC096588.1	FP671120.4	-/.	+/.	4:59626866	21:8215396	intron	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000249392	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
GRID2	RPL24P9(223684),AC074035.1(449955)	+/.	./.	4:92702026	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000152208	.	.	.	upstream	downstream	mismatches(1)	.	.	.
JAZF1	XRCC6P2(65223),MAMLD1(63303)	-/.	./.	7:28161238	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153814	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IKZF1(6399),RNU6-1091P(23880)	PCAT1	./.	+/.	7:50411500	8:127115208	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000253438	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL24P9(223684),AC074035.1(449955)	MTRNR2L10	./.	-/.	X:4177245	X:55181637	intergenic	3'UTR	inversion	0	0	0	22	0	low	.	.	.	.	.	.	ENSG00000256045	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	CT867976.1(150110),AC138776.1(197770)	+/.	./.	21:8442049	22:11629753	intron	intergenic	translocation	0	0	0	5962	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTND1P3(628),MYL6P4(6525)	RPL24P9(223684),AC074035.1(449955)	./.	./.	7:141805280	X:4177245	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
DUSP16	FP236383.3	-/.	+/.	12:12553672	21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000111266	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FOXP1	RPL24P9(223684),AC074035.1(449955)	-/.	./.	3:71391864	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000114861	.	.	.	upstream	downstream	mismatches(1)	.	.	.
WDR81	FP671120.4	+/.	+/.	17:1724796	21:8211701	5'UTR	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167716	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC084337.2	RPL24P9(223684),AC074035.1(449955)	+/.	./.	11:6501874	X:4177245	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000283977	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IGBP1P5(144339),AC007106.2(187270)	RPL24P9(223684),AC074035.1(449955)	./.	./.	4:27730483	X:4177245	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	MIR4300HG	./.	-/.	3:137274346	11:82143173	intergenic	intron	translocation	0	0	0	71	1095	low	.	.	.	.	.	.	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
ATP6V1C1(12280),MTND1P5(320)	RPL24P9(223684),AC074035.1(449955)	./.	./.	8:103085331	X:4177245	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL14P5(13959),CRLF2(163489)	RPL24P9(223684),AC074035.1(449955)	./.	./.	X:1024060	X:4177245	intergenic	intergenic	inversion	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRNR2L1	RPL24P9(223684),AC074035.1(449955)	+/.	./.	17:22524420	X:4177245	3'UTR	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000256618	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL24P9(223684),AC074035.1(449955)	MT-RNR2	./.	+/.	X:4177245	MT:2991	intergenic	exon	translocation	0	0	0	22	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC100803.4	MACROD1	+/.	-/.	8:141434802	11:64038954	exon	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000271959	ENSG00000133315	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC025627.3(255),AC025627.4(240)	RPL24P9(223684),AC074035.1(449955)	./.	./.	17:19601600	X:4177245	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729378	intron	intron	duplication/ITD	0	0	0	41	41	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
ARID4B	AC120193.1	-/.	-/.	1:235327619	8:24904958	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000253535	.	.	upstream	downstream	mismatches(1)	.	.	.
FREM1	FREM1	-/.	-/.	9:14774521	9:14774530	intron	intron	duplication/ITD	0	0	0	8	4	low	.	.	.	.	.	ENSG00000164946	ENSG00000164946	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
RALGDS	HBB	-/.	-/.	9:133148051	11:5225537	intron	3'UTR	translocation	0	0	0	0	91	low	.	.	.	.	.	ENSG00000160271	ENSG00000244734	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262600	intergenic	intron	translocation	0	0	0	71	1540	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
HIPK2	HIPK2	-/.	-/.	7:139729319	7:139729382	intron	intron	duplication/ITD	0	0	0	41	37	low	.	.	.	.	.	ENSG00000064393	ENSG00000064393	.	.	upstream	downstream	duplicates(5),low_entropy(1),merge_adjacent	.	.	.
TUBBP11(353348),RAP1BP2(78779)	ZNF592(4826),ALPK3(6085)	./.	./.	3:103984260	15:84811271	intergenic	intergenic	translocation	0	0	0	83	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CCNT2-AS1	ACMSD	-/.	+/.	2:134845516	2:134845525	intron	intron	duplication/5'-5'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000153086	.	.	upstream	downstream	low_entropy(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	YBX2P2	./.	-/.	3:103984260	15:93066410	intergenic	exon	translocation	0	0	0	83	6	low	.	.	.	.	.	.	ENSG00000258611	.	.	upstream	downstream	mismatches(1)	.	.	.
AC138474.1	AC012060.1(92676),LINC02248(36443)	-/-	./-	19:13014315	15:26358594	exon	intergenic	translocation	0	0	0	0	71	low	.	.	.	.	.	ENSG00000267417	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
UBE2W	ZNF592(4826),ALPK3(6085)	-/.	./.	8:73820102	15:84811271	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC6A14	SLC6A14	+/.	+/.	X:116445453	X:116445497	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000268104	ENSG00000268104	.	.	upstream	downstream	low_entropy(1)	.	.	.
RPS7P4(20662),COX6B1P7(18671)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	1:68263717	21:8258619	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
EXO1	TNFAIP3	+/.	+/.	1:241890554	6:137873616	intron	intron	translocation	0	0	0	1	10	low	.	.	.	.	.	ENSG00000174371	ENSG00000118503	.	.	downstream	upstream	mismatches(1)	.	.	.
EXO1	GAPDHP36(89380),RALBP1P1(20619)	+/.	./.	1:241890554	3:180302488	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000174371	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL359636.2	LINC01068(56234),AL136442.1(9754)	+/.	./.	9:122558264	13:79627679	intron	intergenic	translocation	0	0	0	15	1	low	.	.	.	.	.	ENSG00000234156	.	.	.	downstream	downstream	mismatches(1)	.	.	.
NDST4	AL359636.2	-/.	+/.	4:114961948	9:122558261	intron	intron	translocation	0	0	0	1	15	low	.	.	.	.	.	ENSG00000138653	ENSG00000234156	.	.	downstream	downstream	mismatches(1)	.	.	.
MEG8	MEG8	+/.	+/.	14:101038561	14:101038658	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000225746	ENSG00000225746	.	.	upstream	downstream	low_entropy(1)	.	.	.
ACMSD	ACMSD	+/.	+/.	2:134845516	2:134845525	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000153086	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC15A5	SLC15A5	-/.	-/.	12:16193776	12:16193835	intron	intron	duplication/ITD	0	0	0	28	28	low	.	.	.	.	.	ENSG00000188991	ENSG00000188991	.	.	upstream	downstream	duplicates(3),low_entropy(1)	.	.	.
CCNT2-AS1	ACMSD	-/.	+/.	2:134845513	2:134845524	intron	intron	duplication/5'-5'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000153086	.	.	upstream	downstream	duplicates(1)	.	.	.
TAB2(11975),ZC3H12D(23207)	TAB2(11986),ZC3H12D(23196)	./.	./.	6:149423588	6:149423599	intergenic	intergenic	duplication/ITD	0	0	0	86	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211701	21:8395074	intron	intron	inversion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005242.4(3769),AP005242.2(6971)	AP005242.4(3778),AP005242.2(6962)	./.	./.	18:14997004	18:14997013	intergenic	intergenic	duplication/ITD	0	0	0	25	23	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM250	CEP170B	-/-	+/-	9:136116208	14:104883536	3'UTR	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	Family_of_unknown_function_(DUF5533)(100%)|	.	.	ENSG00000238227	ENSG00000099814	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SDHAP2	AC019055.1(21875),CISD1P1(86798)	+/+	./-	3:195668580	2:19739451	exon	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000215837	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
OR4A44P(111592),AC027369.6(140026)	FP236383.3	./.	+/.	11:48740085	21:8442048	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL591519.1	RGN	+/.	+/.	6:93664787	X:47086735	intron	intron	translocation	0	0	0	15	40	low	.	.	.	.	.	ENSG00000287683	ENSG00000130988	.	.	downstream	upstream	low_entropy(1)	.	.	.
AP001823.1(3431),ELMOD1(757)	GPC3	./.	-/.	11:107590334	X:133661643	intergenic	intron	translocation	0	0	0	1909	131	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
MUC20-OT1	CRADD	+/+	+/-	3:195668580	12:93679807	exon	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000242086	ENSG00000169372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CACNA1B	CDH5	+/.	+/.	9:137987195	16:66399644	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148408	ENSG00000179776	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH10	DNAH10	+/.	+/.	12:123896149	12:123896162	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000197653	ENSG00000197653	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC010735.2	IGSF21	+/+	+/+	2:226800182	1:18369039	exon	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000272622	ENSG00000117154	.	.	downstream	upstream	homopolymer(1)	.	.	.
ARHGAP30	AC106886.2	-/.	+/.	1:161059767	16:30749069	intron	intron	translocation	0	0	0	31	290	low	.	.	.	.	.	ENSG00000186517	ENSG00000260899	.	.	downstream	downstream	low_entropy(1)	.	.	.
DLG2	DLG2	-/.	-/.	11:83724477	11:83724490	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000150672	ENSG00000150672	.	.	upstream	downstream	low_entropy(1)	.	.	.
DLG2-AS2	DLG2-AS2	+/.	+/.	11:83724477	11:83724490	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000255311	ENSG00000255311	.	.	upstream	downstream	low_entropy(1)	.	.	.
NGB	NGB	-/.	-/.	14:77269666	14:77269683	intron	intron	duplication/ITD	0	0	0	9	8	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
KRT8P37(31736),CHCHD3P1(73091)	KRT8P37(31751),CHCHD3P1(73076)	./.	./.	10:8546842	10:8546857	intergenic	intergenic	duplication/ITD	0	0	0	7	6	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8411580	21:8438935	intron	intron	inversion/3'-3'	0	0	0	3	159	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ADAMTS20	AC117569.1(61813),AC117569.2(19788)	-/.	./.	12:43427399	18:29610054	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000173157	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AGBL4	AGBL4	-/.	-/.	1:50019264	1:50019307	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000186094	ENSG00000186094	.	.	upstream	downstream	low_entropy(1)	.	.	.
DENND1A(67876),LHX2(3642)	PRR5L	./.	+/.	9:123998028	11:36411625	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000135362	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPL22P12(924),BUB1(2271)	LIMD1	./.	+/.	2:110635257	3:45593628	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000144791	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396546	8:22396555	intron	intron	duplication/ITD	0	0	0	229	178	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(3)	.	.	.
ATP2B2	SLC6A12	-/-	-/+	3:10324217	12:199333	3'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Cation_transport_ATPase_(P-type)(100%),Cation_transporter/ATPase__N-terminus(100%),Cation_transporting_ATPase__C-terminus(100%),E1-E2_ATPase(100%),Plasma_membrane_calcium_transporter_ATPase_C_terminal(100%),haloacid_dehalogenase-like_hydrolase(100%)|	.	.	ENSG00000157087	ENSG00000111181	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC6A12	DLEU1	-/.	+/.	12:199333	13:50299794	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111181	ENSG00000176124	.	.	upstream	downstream	mismatches(1)	.	.	.
CSMD3	FP671120.4	-/.	+/.	8:113235338	21:8217548	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000164796	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
C4orf54(33072),DAPP1(129107)	Z96074.1	./.	+/.	4:99687720	X:137574881	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000283692	.	.	upstream	downstream	mismatches(1)	.	.	.
COL2A1	AC024257.3	-/.	+/.	12:47979860	12:48212642	intron	intron	deletion/read-through/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139219	ENSG00000269514	.	.	downstream	upstream	low_entropy(1)	.	.	.
NOTCH2NLC	SEMA5A	+/.	-/.	1:149421231	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286219	ENSG00000112902	.	.	upstream	upstream	mismatches(1)	.	.	.
DCBLD2	FP236383.3	-/.	+/.	3:98886177	21:8397434	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000057019	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
HDAC5	FP236383.3	-/-	+/+	17:44078031	21:8397829	3'UTR	intron	translocation	0	0	0	0	1126	low	.	.	Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)|	.	.	ENSG00000108840	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
AC242842.3	SEMA5A	+/.	-/.	1:149421231	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286185	ENSG00000112902	.	.	upstream	upstream	mismatches(1)	.	.	.
KLHL29	AC009242.1	+/.	-/.	2:23670918	2:23670931	intron	intron	duplication/3'-3'	0	0	0	17	17	low	.	.	.	.	.	ENSG00000119771	ENSG00000283031	.	.	upstream	downstream	duplicates(14),low_entropy(2)	.	.	.
LINC01608	GSPT1	-/.	-/.	8:110977288	16:11873364	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000253877	ENSG00000103342	.	.	upstream	downstream	mismatches(1)	.	.	.
NOTCH2	SEMA5A	-/.	-/.	1:120039694	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000134250	ENSG00000112902	.	.	downstream	upstream	mismatches(1)	.	.	.
NBPF10	SEMA5A	-/.	-/.	1:146199077	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000271425	ENSG00000112902	.	.	downstream	upstream	mismatches(1)	.	.	.
NOTCH2NLR	SEMA5A	+/.	-/.	1:120753935	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286106	ENSG00000112902	.	.	upstream	upstream	mismatches(1)	.	.	.
TATDN2	RBFOX1	+/.	+/.	3:10249511	16:6603609	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000078328	.	.	upstream	upstream	mismatches(2)	.	.	.
NBPF26	SEMA5A	+/.	-/.	1:120753935	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273136	ENSG00000112902	.	.	upstream	upstream	mismatches(1)	.	.	.
NBPF14	SEMA5A	-/.	-/.	1:148649796	5:9502823	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000270629	ENSG00000112902	.	.	downstream	upstream	mismatches(1)	.	.	.
AL355499.1	TTC3	+/.	+/.	6:8129400	21:37200760	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000232234	ENSG00000182670	.	.	upstream	downstream	mismatches(1)	.	.	.
NAALADL2	AL157778.1	+/.	+/.	3:175089639	X:98620389	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177694	ENSG00000281566	.	.	upstream	downstream	mismatches(1)	.	.	.
MAFG-DT	CCDC200	+/+	-/-	17:81928147	17:43295980	exon	intron	inversion	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	ENSG00000236383	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IMPA2	AC006015.1(29578),AC079355.1(33195)	+/+	./+	18:12028982	7:63666195	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	Inositol_monophosphatase_family(87%)|	.	.	ENSG00000141401	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NAALADL2-AS3	AL157778.1	-/.	+/.	3:175089639	X:98620389	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000230292	ENSG00000281566	.	.	upstream	downstream	mismatches(1)	.	.	.
NAALADL2	GAS7	+/.	-/.	3:175089638	17:10113117	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177694	ENSG00000007237	.	.	upstream	upstream	mismatches(1)	.	.	.
IGF2R	MARCHF11	+/+	-/-	6:159969258	5:16095811	CDS	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000197081	ENSG00000183654	.	.	downstream	downstream	mismatches(1)	.	.	.
FNDC3B	FBLN5	+/.	-/.	3:171840463	14:91915742	intergenic	intron	translocation/3'-3'	1	0	0	0	0	low	.	.	.	.	.	ENSG00000075420	ENSG00000140092	.	.	upstream	downstream	min_support	.	.	.
NAALADL2-AS3	GAS7	-/.	-/.	3:175089638	17:10113117	intron	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000230292	ENSG00000007237	.	.	upstream	upstream	mismatches(1)	.	.	.
DACT2(25892),AL138918.1(29028)	AC025366.1(57830),AP005357.1(76639)	./.	./.	6:168345669	8:110690224	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(5),mismatches(6)	.	.	.
TMTC1(185374),AC023511.3(116209)	PTPRS	./.	-/.	12:29970133	19:5311382	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000105426	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01731	LINC02620	-/.	-/.	1:148280011	10:104479914	intron	intron	translocation	0	0	0	55	1761	low	.	.	.	.	.	ENSG00000234283	ENSG00000225768	.	.	upstream	downstream	mismatches	.	.	.
LINC02008(50505),CYP51A1P1(292335)	TMTC1(185373),AC023511.3(116210)	./.	./.	3:82514180	12:29970132	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FHIT	RHEB	-/.	-/.	3:61042065	7:151518605	5'UTR	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	ENSG00000106615	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF19	TAT-AS1(6257),AC009097.2(39264)	-/.	./.	16:71521055	16:71584444	intron	intergenic	deletion/read-through	0	0	0	85	86	low	.	.	.	.	.	ENSG00000157429	.	.	.	downstream	upstream	duplicates(4),inconsistently_clipped(3)	.	.	.
GLE1	TMTC1(185373),AC023511.3(116210)	+/.	./.	9:128525187	12:29970132	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119392	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM136BP(336),SERPINB8P1(2699)	SPIN3	./.	-/.	6:3046136	X:56931247	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000204271	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL008626.1(48219),RPS29P4(44012)	TMTC1(185375),AC023511.3(116208)	./.	./.	1:175253068	12:29970134	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7	DTNA	-/-	+/-	21:8255172	18:34571662	exon	intron	translocation/5'-5'	0	0	0	3	14	low	.	.	.	.	.	ENSG00000281383	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
SEMA5A	CSTP1(37813),AL133466.1(13818)	-/.	./.	5:9502823	20:23966767	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000112902	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CSTP1(37812),AL133466.1(13819)	LINC01549	./.	+/.	20:23966766	21:17448896	intergenic	exon	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000232560	.	.	upstream	upstream	mismatches(1)	.	.	.
AC006499.8(7833),RAF1P1(8858)	SEMA5A	./.	-/.	4:10246068	5:9502823	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000112902	.	.	upstream	upstream	mismatches(1)	.	.	.
MAFG-DT	ZP3	+/+	+/-	17:81928147	7:76423247	exon	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	ENSG00000188372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC006499.8(7832),RAF1P1(8859)	LINC01549	./.	+/.	4:10246067	21:17448896	intergenic	exon	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000232560	.	.	upstream	upstream	mismatches(1)	.	.	.
AC034228.3	AC084768.2(90337),AC087369.1(41556)	-/.	./.	5:132011045	8:5807141	intron	intergenic	translocation	0	1	0	7	0	low	.	.	.	.	.	ENSG00000281938	.	.	.	downstream	upstream	min_support	.	.	.
PRDM16	FP236383.3	+/.	+/.	1:3423343	21:8397839	intron	intron	translocation	0	0	0	0	5614	low	.	.	.	.	.	ENSG00000142611	ENSG00000280441	.	.	upstream	downstream	duplicates(1),homopolymer(2)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214800	21:8214801	intron	intron	duplication/ITD	0	0	0	5263	6035	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(1),homopolymer(1),merge_adjacent	.	.	.
AC097480.2(49410),RN7SL101P(60943)	ILRUN	./.	-/.	4:28650255	6:34634770	intergenic	intron	translocation	0	0	0	6	6	low	.	.	.	.	.	.	ENSG00000196821	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214800	21:8442065	intron	intron	duplication	0	0	0	5263	6003	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
FP671120.3(291),FP671120.7(4152)	FP236383.3	./.	+/.	21:8250440	21:8442056	intergenic	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(10),mismatches(6)	.	.	.
DNAH14	AP003390.1(4492),AP001994.1(77189)	+/.	./.	1:225078904	11:119744115	intron	intergenic	translocation	0	0	0	144	3583	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	downstream	mismatches	.	.	.
AP005436.1	AP003390.1(4504),AP001994.1(77177)	-/.	./.	11:88092322	11:119744127	intron	intergenic	duplication	0	0	0	1166	3002	low	.	.	.	.	.	ENSG00000255102	.	.	.	upstream	downstream	mismatches	.	.	.
LY6E(14617),C8orf31(760)	AP003390.1(4504),AP001994.1(77177)	./.	./.	8:143038449	11:119744127	intergenic	intergenic	translocation	0	0	0	178	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
ELK2BP(9056),IGHA2(24981)	5_8S_rRNA(2080),FP236383.3(121630)	./.	./.	14:105558750	21:8259013	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP001823.1(3428),ELMOD1(760)	-/.	./.	11:88092322	11:107590331	intron	intergenic	inversion	0	0	0	1166	1909	low	.	.	.	.	.	ENSG00000255102	.	.	.	upstream	upstream	mismatches	.	.	.
DDB2	AL136441.1	+/.	-/.	11:47233103	13:76652642	intron	intron	translocation	0	0	0	341	3	low	.	.	.	.	.	ENSG00000134574	ENSG00000285572	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC022826.2	CEMIP2(21729),ABHD17B(24033)	-/.	./.	8:73820102	9:71838419	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	upstream	duplicates(5)	.	.	.
SGIP1	SGIP1	+/.	+/.	1:66631650	1:66631728	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000118473	ENSG00000118473	.	.	upstream	downstream	low_entropy(2)	.	.	.
PDPN	DDB2	+/.	+/.	1:13583781	11:47233105	5'UTR	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000162493	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
PCAT14(10850),AP000345.1(8417)	PCAT14(10913),AP000345.1(8354)	./.	./.	22:23558647	22:23558710	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8444815	MT:2221	intron	exon	translocation/3'-3'	0	0	0	62	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(2),uninteresting_contigs(4)	.	.	.
NXF2(27555),AC235565.2(6118)	NXF2(27652),AC235565.2(6021)	./.	./.	X:102354277	X:102354374	intergenic	intergenic	duplication/ITD	0	0	0	0	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2),merge_adjacent	.	.	.
MAP4K4	GPC3	+/.	-/.	2:101785682	X:133661643	intron	intron	translocation/3'-3'	0	0	0	496	131	low	.	.	.	.	.	ENSG00000071054	ENSG00000147257	.	.	upstream	downstream	mismatches	.	.	.
LINC02005	PCAT1	+/.	+/.	3:73813296	8:127115208	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000242741	ENSG00000253438	.	.	upstream	upstream	mismatches(1)	.	.	.
FAM149A	FAM149A	+/.	+/.	4:186136933	4:186137019	intron	intron	duplication/ITD	0	0	0	0	4	low	.	.	.	.	.	ENSG00000109794	ENSG00000109794	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AC005229.3(17560),AC005229.4(28667)	AC005229.3(17597),AC005229.4(28630)	./.	./.	7:148667800	7:148667837	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
CDKL5	CDKL5	+/.	+/.	X:18626672	X:18626681	intron	intron	duplication/ITD	0	0	0	101	101	low	.	.	.	.	.	ENSG00000008086	ENSG00000008086	.	.	upstream	downstream	duplicates(6),merge_adjacent	.	.	.
MAPKBP1	RN7SKP190(112023),AC009117.1(130015)	+/.	./.	15:41818881	16:82304813	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000137802	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CACNG3	CACNG3	+/.	+/.	16:24257365	16:24257419	intron	intron	duplication/ITD	0	0	0	82	82	low	.	.	.	.	.	ENSG00000006116	ENSG00000006116	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916550	2:32916556	intron	intron	inversion/3'-3'	0	0	0	47	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	hairpin	.	.	.
DDB2	TM9SF4	+/.	+/.	11:47233105	20:32160143	intron	intron	translocation/5'-5'	0	0	0	341	4	low	.	.	.	.	.	ENSG00000134574	ENSG00000101337	.	.	downstream	downstream	mismatches(2)	.	.	.
IL20RB(263261),RNA5SP142(243788)	CDK5P1(3506),AC016405.3(6315)	./.	./.	3:137274346	8:122773656	intergenic	intergenic	translocation	0	0	0	71	7	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
FP326651.1(1880),Y_RNA(175132)	DDB2	./.	+/.	9:65398252	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
FP326651.1(1883),Y_RNA(175129)	AP001599.1	./.	+/.	9:65398255	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
OXNAD1	AC111193.1(23590),ARSJ(36458)	+/.	./.	3:16298767	4:113863826	intron	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000154814	.	.	.	downstream	upstream	mismatches(2)	.	.	.
FP326651.1(1901),Y_RNA(175111)	AP001599.1	./.	+/.	9:65398273	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02466	AC087672.2	-/.	+/.	4:129613123	8:74096403	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000246876	ENSG00000254288	.	.	upstream	downstream	mismatches(1)	.	.	.
FP326651.1(1937),Y_RNA(175075)	AP001599.1	./.	+/.	9:65398309	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
AC004801.4(4165),AC004801.6(10150)	FP671120.4	./.	+/.	12:48029634	21:8206404	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP326651.1(1952),Y_RNA(175060)	DDB2	./.	+/.	9:65398324	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
SRP14P4(39612),GM2AP2(7310)	DLG2	./.	-/.	1:171384919	11:85484198	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	homopolymer(1)	.	.	.
FXNP1(22671),NRXN3(87424)	FXNP1(22685),NRXN3(87410)	./.	./.	14:78082949	14:78082963	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
FP671120.4	5_8S_rRNA(1693),FP236383.3(122017)	+/.	./.	21:8211705	21:8258626	intron	intergenic	inversion	0	0	0	0	44	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
FP326651.1(1955),Y_RNA(175057)	AP001599.1	./.	+/.	9:65398327	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
FP326651.1(1991),Y_RNA(175021)	AP001599.1	./.	+/.	9:65398363	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	CFAP58	-/.	+/.	6:42262596	10:104396370	intron	intron	translocation/3'-3'	0	0	0	1540	558	low	.	.	.	.	.	ENSG00000124496	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
FP326651.1(2027),Y_RNA(174985)	AP001599.1	./.	+/.	9:65398399	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
FP326651.1(2045),Y_RNA(174967)	AP001599.1	./.	+/.	9:65398417	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104123.1	AC092066.1(2378),CBLC(10027)	+/.	./.	5:96361270	19:44767842	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251314	.	.	.	upstream	upstream	mismatches(1)	.	.	.
WWC1	TM9SF4	+/.	+/.	5:168337916	20:32160148	intron	intron	translocation	0	0	0	16	4	low	.	.	.	.	.	ENSG00000113645	ENSG00000101337	.	.	upstream	downstream	mismatches(2)	.	.	.
FP326651.1(2063),Y_RNA(174949)	AP001599.1	./.	+/.	9:65398435	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
ITGA2B	SQSTM1P1(123820),AL445668.1(8615)	-/-	./-	17:44384408	13:62530736	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000005961	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
FP326651.1(2078),Y_RNA(174934)	DDB2	./.	+/.	9:65398450	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47233105	21:8395070	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	BAIAP2	./.	+/.	15:26358594	17:81089647	intergenic	intron	translocation	0	0	0	71	1	low	.	.	.	.	.	.	ENSG00000175866	.	.	downstream	downstream	mismatches(1)	.	.	.
FP326651.1(2081),Y_RNA(174931)	AP001599.1	./.	+/.	9:65398453	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
AGRN	CDH8	+/+	-/-	1:1046489	16:61831043	CDS	intron	translocation	0	0	0	0	57	low	.	.	Agrin_NtA_domain(100%),Kazal-type_serine_protease_inhibitor_domain(100%),Laminin_EGF_domain(100%)|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000188157	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
KCNIP1-AS1	DDB2	-/.	+/.	5:170676141	11:47233105	intron	intron	translocation	0	0	0	2	341	low	.	.	.	.	.	ENSG00000253591	ENSG00000134574	.	.	downstream	downstream	mismatches(2)	.	.	.
AC073529.1	MT-RNR2	-/.	+/.	X:10882695	MT:2231	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000234129	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
KCNIP1	AP001599.1	+/.	+/.	5:170676144	21:26914103	intron	intron	translocation/5'-5'	0	0	0	2	167	low	.	.	.	.	.	ENSG00000182132	ENSG00000223563	.	.	downstream	downstream	mismatches(2)	.	.	.
KCNIP1-AS1	AP001599.1	-/.	+/.	5:170676144	21:26914103	intron	intron	translocation	0	0	0	2	167	low	.	.	.	.	.	ENSG00000253591	ENSG00000223563	.	.	downstream	downstream	mismatches(2)	.	.	.
ERI3	KCNIP1-AS1	-/.	-/.	1:44320094	5:170676145	intron	intron	translocation/3'-3'	0	0	0	67	2	low	.	.	.	.	.	ENSG00000117419	ENSG00000253591	.	.	downstream	downstream	mismatches(2)	.	.	.
UBE2FP2(4834),AC138305.1(128359)	UBE2FP2(4911),AC138305.1(128282)	./.	./.	16:63185905	16:63185982	intergenic	intergenic	duplication/ITD	0	0	0	289	87	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
KCNIP1-AS1	AC012060.1(92676),LINC02248(36443)	-/.	./.	5:170676145	15:26358594	intron	intergenic	translocation	0	0	0	2	71	low	.	.	.	.	.	ENSG00000253591	.	.	.	downstream	downstream	mismatches(2)	.	.	.
DDB2	AC009035.1(259591),C16orf82(77990)	+/.	./.	11:47233105	16:26988717	intron	intergenic	translocation	0	0	0	341	14	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01360(228769),LINC02238(51194)	GAPDHP75(532267),RNA5SP73(590)	./.	./.	1:73584022	1:189665559	intergenic	intergenic	deletion	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP326651.1(1865),Y_RNA(175147)	AP001599.1	./.	+/.	9:65398237	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
HS6ST1(21690),Y_RNA(10271)	AP000255.1(48499),TPT1P1(55435)	./.	./.	2:128340558	21:31784906	intergenic	intergenic	translocation	0	0	0	35	191	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
GAPDHP36(89379),RALBP1P1(20620)	FP236383.3	./.	+/.	3:180302487	21:8445488	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DAZAP2	DAZAP2	+/.	+/.	12:51248435	12:51248448	intron	intron	duplication/ITD	0	0	0	6	5	low	.	.	.	.	.	ENSG00000183283	ENSG00000183283	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
HIVEP2	FP236383.3	-/.	+/.	6:142946387	21:8394734	intron	intron	translocation/3'-3'	0	0	0	63	154	low	.	.	.	.	.	ENSG00000010818	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	TBC1D32	./.	-/.	3:35255769	6:121333739	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000146350	.	.	downstream	downstream	mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	BEAN1	./.	+/.	3:35255769	16:66427487	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000166546	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	ZIC3	./.	+/.	3:35255769	X:137574882	intergenic	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	.	ENSG00000156925	.	.	downstream	downstream	mismatches(1)	.	.	.
AC106901.1(79693),AC016903.1(10591)	AC106901.1(79736),AC016903.1(10548)	./.	./.	2:204459485	2:204459528	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(11),low_entropy(6)	.	.	.
TBC1D32	RBFOX1	-/.	+/.	6:121333739	16:6222319	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000146350	ENSG00000078328	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093326.1	UBE2W	+/.	-/.	2:562608	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233633	ENSG00000104343	.	.	downstream	upstream	mismatches(1)	.	.	.
CFTR	WBP4	+/.	+/.	7:117448925	13:41062046	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000001626	ENSG00000120688	.	.	upstream	upstream	mismatches(1)	.	.	.
TBC1D32	SAMD12	-/.	-/.	6:121333739	8:118554925	intron	intron	translocation/3'-3'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000146350	ENSG00000177570	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214800	21:8214818	intron	intron	duplication/ITD	0	0	0	5263	6035	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	hairpin(1),merge_adjacent	.	.	.
FJX1(30126),AL138812.1(5703)	RBFOX1	./.	+/.	11:35650991	16:6222319	intergenic	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	.	ENSG00000078328	.	.	upstream	upstream	mismatches(1)	.	.	.
WIPI2(6935),SLC29A4(33594)	RBFOX1	./.	+/.	7:5240775	16:6222319	intergenic	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	.	ENSG00000078328	.	.	upstream	upstream	mismatches(1)	.	.	.
MUC20-OT1	AC019055.1(21875),CISD1P1(86798)	+/+	./-	3:195668580	2:19739451	exon	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000242086	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RBFOX1	Z96074.1	+/.	+/.	16:6222317	X:137574880	intron	intron	translocation	0	0	0	22	0	low	.	.	.	.	.	ENSG00000078328	ENSG00000283692	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008691.1	ARL2	+/.	+/.	5:159645741	11:65014891	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	ENSG00000213465	.	.	upstream	downstream	mismatches(1)	.	.	.
AC008691.1	FJX1(30126),AL138812.1(5703)	+/.	./.	5:159645741	11:35650991	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249738	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ARL2	KRT8P27(3758),GRPEL2P2(69547)	+/.	./.	11:65014891	X:64628331	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000213465	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CASC15	IQCH	+/.	+/.	6:22487717	15:67310422	intron	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	ENSG00000272168	ENSG00000103599	.	.	downstream	upstream	mismatches(1)	.	.	.
EHBP1L1	AC019055.1(21875),CISD1P1(86798)	+/+	./-	11:65592550	2:19739451	3'UTR	intergenic	translocation	0	0	0	0	8	low	.	.	Bivalent_Mical/EHBP_Rab_binding_domain(100%),Calponin_homology_(CH)_domain(100%),N-terminal_C2_in_EEIG1_and_EHBP1_proteins(100%)|	.	.	ENSG00000173442	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SAMD12	ARL2	-/.	+/.	8:118554925	11:65014891	intron	intron	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	ENSG00000213465	.	.	downstream	downstream	mismatches(1)	.	.	.
UBE2W	GLIS3	-/.	-/.	8:73820101	9:4073685	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000107249	.	.	upstream	upstream	mismatches(1)	.	.	.
NSMAF(94883),TOX(50676)	ZIC3	./.	+/.	8:58754736	X:137574881	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000156925	.	.	downstream	downstream	mismatches(1)	.	.	.
C18orf63	ZIC3	+/.	+/.	18:74335215	X:137574881	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000206043	ENSG00000156925	.	.	upstream	downstream	mismatches(1)	.	.	.
ZNF24(8360),ZNF396(12852)	FP671120.4	./.	+/.	18:35353842	21:8217545	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
C18orf63	Z96074.1	+/.	+/.	18:74335215	X:137574881	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000206043	ENSG00000283692	.	.	upstream	downstream	mismatches(1)	.	.	.
NUP214	HBB	+/.	-/.	9:131197616	11:5225536	CDS	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000126883	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
SAMD12	LINC01169(15213),SMAD6(1229)	-/.	./.	8:118554925	15:66701007	intron	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000177570	.	.	.	downstream	downstream	mismatches(1)	.	.	.
KRT8P18(38619),RNU6-243P(1072)	DCHS2	./.	-/.	3:35255768	4:154351661	intergenic	intron	translocation	0	0	0	21	2	low	.	.	.	.	.	.	ENSG00000197410	.	.	downstream	downstream	mismatches(1)	.	.	.
FBXL7	FP236383.3	+/.	+/.	5:15866365	21:8397817	intron	intron	translocation/3'-3'	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000183580	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
ABHD14A	SLC6A12	+/+	-/+	3:51973857	12:199333	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248487	ENSG00000111181	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7	UBE2V1P3(94050),AC010737.1(75725)	-/-	./+	21:8254770	Y:3960772	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281383	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GAP43	LINC01377(90356),LINC01019(85421)	+/.	./.	3:115658523	5:3271843	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172020	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NRIP3	AL080313.1	-/-	+/-	11:9003964	6:14402223	5'UTR	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000175352	ENSG00000234540	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479811	10:104479909	intron	intron	duplication/ITD	0	0	0	2200	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
MEMO1	SLC6A12	-/.	-/.	2:31965344	12:199333	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162959	ENSG00000111181	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116049.1(12594),AC110809.1(7172)	SLC6A12	./.	-/.	4:66162606	12:199333	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111181	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE2E2(17420),RNU6-922P(4447)	PLAGL1(20798),SF3B5(9487)	./.	./.	3:23609214	6:144085397	intergenic	intergenic	translocation	0	0	0	0	52	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ACTB	IL1RAPL2	-/.	+/.	7:5556356	X:105726992	intron	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000075624	ENSG00000189108	.	.	downstream	downstream	mismatches(1)	.	.	.
AL513217.1	SLC6A12	+/.	-/.	1:201894663	12:199333	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000223774	ENSG00000111181	.	.	downstream	upstream	mismatches(1)	.	.	.
TNIK	CBWD3	-/.	+/.	3:171458323	9:68241911	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000154310	ENSG00000196873	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NLN	SLC6A12	+/.	-/.	5:65813192	12:199333	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000123213	ENSG00000111181	.	.	upstream	upstream	mismatches(1)	.	.	.
POLR1A	SLC6A12	-/.	-/.	2:86021775	12:199333	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000068654	ENSG00000111181	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3(3810),FP236383.11(3718)	CT867976.1(150830),AC138776.1(197050)	./.	./.	21:8458602	22:11630473	intergenic	intergenic	translocation	0	0	0	17	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC073314.1(1244),ZNF777(5229)	SLC6A12	./.	-/.	7:149426134	12:199333	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111181	.	.	downstream	upstream	mismatches(1)	.	.	.
CXCL12(8345),RPL9P21(19811)	AC106886.2	./.	+/.	10:44394838	16:30749061	intergenic	intron	translocation	0	0	0	0	290	low	.	.	.	.	.	.	ENSG00000260899	.	.	downstream	downstream	mismatches(1)	.	.	.
ANK1	SLC6A12	-/.	-/.	8:41669855	12:199333	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000029534	ENSG00000111181	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01358	PTCHD1(232602),PRDX4(27286)	+/.	./.	1:59216833	X:23636976	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000237352	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FARS2	DNMT3L	+/.	-/.	6:5782068	21:44250998	intron	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	ENSG00000145982	ENSG00000142182	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01358	ANP32B	+/.	+/.	1:59216836	9:97983496	intron	5'UTR	translocation/3'-3'	0	0	0	2	8	low	.	.	.	.	.	ENSG00000237352	ENSG00000136938	.	.	upstream	upstream	mismatches(1)	.	.	.
VWA2	ABCC5(1208),EEF1A1P8(7222)	+/+	./+	10:114278046	3:184019147	CDS/splice-site	intergenic	translocation	0	0	0	6	0	low	.	.	von_Willebrand_factor_type_A_domain(33%)|	.	.	ENSG00000165816	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AUTS2	AC068759.1	+/+	+/+	7:70694497	3:173217193	5'UTR	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000158321	ENSG00000237473	.	.	downstream	upstream	mismatches(1)	.	.	.
ROBO2(144776),RNU6-217P(17001)	FP671120.4	./.	+/.	3:77794740	21:8216865	intergenic	intron	translocation	0	0	0	4	1	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01219	5_8S_rRNA(2087),FP236383.3(121623)	+/.	./.	11:1991349	21:8259020	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000232987	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LRRC4C	-/.	-/.	10:104479908	11:41021153	intron	intron	translocation	0	0	0	1761	632	low	.	.	.	.	.	ENSG00000225768	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
LINC02880(9169),HDAC2(2217)	AP003390.1(4493),AP001994.1(77188)	./.	./.	6:113930811	11:119744116	intergenic	intergenic	translocation	0	0	0	7	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
PSMG4	GRK3	+/.	+/.	6:3259269	22:25696065	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000180822	ENSG00000100077	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MTRNR2L8	5_8S_rRNA(1601),FP236383.3(122109)	-/.	./.	11:10508413	21:8258534	5'UTR	intergenic	translocation	0	0	0	70	0	low	.	.	.	.	.	ENSG00000255823	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC9A7P1(35),LINC02453(28364)	KLK14(6031),CTU1(7330)	./.	./.	12:98457180	19:51090276	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FRK	FAM126A	-/.	-/.	6:115975968	7:22948293	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111816	ENSG00000122591	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214800	21:8214817	intron	intron	duplication/ITD	0	0	0	5263	6035	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
AC093912.1(103819),AC073062.1(102171)	5_8S_rRNA(1686),FP236383.3(122024)	./.	./.	2:13435502	21:8258619	intergenic	intergenic	translocation	0	0	0	28	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(4)	.	.	.
PTPRD	ZNF43(30936),ZNF208(49897)	-/.	./.	9:8770682	19:21883061	intron	intergenic	translocation	0	0	0	4	4	low	.	.	.	.	.	ENSG00000153707	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ROBO1	AC073349.2	-/.	-/.	3:78928988	7:64836200	intron	exon	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000169855	ENSG00000234338	.	.	downstream	downstream	mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749081	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
PPP2CA	LIN52(32937),VSX2(5277)	-/.	./.	5:134225646	14:74234172	intron	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000113575	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP56(276347),PSMC1P12(73497)	FRK	./.	-/.	1:118540836	6:115975968	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000111816	.	.	upstream	upstream	mismatches(1)	.	.	.
HSD52	BMS1P11(23056),AL359955.2(5036)	-/.	./.	1:59216837	9:64732367	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224609	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ROBO1	TRIM5	-/.	-/.	3:78928988	11:5936976	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000169855	ENSG00000132256	.	.	downstream	upstream	mismatches(1)	.	.	.
ROBO1	ZNF43(30934),ZNF208(49899)	-/.	./.	3:78928989	19:21883059	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000169855	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF43(30936),ZNF208(49897)	NDUFA1(11970),AKAP14(7205)	./.	./.	19:21883061	X:119888632	intergenic	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ERI3	KSR2(13730),RFC5(30868)	-/.	./.	1:44320098	12:117982720	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	mismatches(1)	.	.	.
WDR35	SORCS2	-/.	+/.	2:19934027	4:7400489	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000118965	ENSG00000184985	.	.	upstream	downstream	mismatches(1)	.	.	.
AL133304.3	FP236383.3	+/.	+/.	14:36002552	21:8433768	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258342	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FRK	AL512655.1(40965),AL390964.1(78401)	-/.	./.	6:115975968	13:54860203	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111816	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GDNF-AS1	FAM189A1	+/.	-/.	5:37928445	15:29308489	intron	intron	translocation/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000248587	ENSG00000104059	.	.	downstream	upstream	mismatches(1)	.	.	.
AXIN1	ERVK13-1	-/.	-/.	16:338536	16:2663078	intron	exon	inversion/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000103126	ENSG00000260565	.	.	downstream	downstream	mismatches(1)	.	.	.
SGMS2	FRK	+/.	-/.	4:107911211	6:115975968	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164023	ENSG00000111816	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4364),AP001994.1(77317)	AP003390.1(4373),AP001994.1(77308)	./.	./.	11:119743987	11:119743996	intergenic	intergenic	duplication/ITD	0	0	0	1583	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(3),low_entropy(5),merge_adjacent	.	.	.
MAFG-DT	ZP3	+/+	+/-	17:81928147	7:76423229	exon	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	ENSG00000188372	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(1549),FP236383.3(122161)	MT-RNR2	./.	+/.	21:8258482	MT:1699	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TRIM5	AC015813.5(36050),AC015813.8(6552)	-/.	./.	11:5936976	17:58044237	intron	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000132256	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU6-1312P(217523),CRLF3P3(155775)	AC015813.5(36050),AC015813.8(6552)	./.	./.	2:83875365	17:58044237	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR4432HG	ECM2	-/-	-/+	2:60352154	9:92531734	exon	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000228590	ENSG00000106823	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
UBE2W	DLG2	-/.	-/.	8:73820101	11:85484195	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000104343	ENSG00000150672	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DYNC2H1	FP236383.3	+/.	+/.	11:103278165	21:8441659	intron	intron	translocation	0	0	0	12	546	low	.	.	.	.	.	ENSG00000187240	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC067942.2(17103),LINC00575(12487)	FP236383.3	./.	+/.	4:82598487	21:8442049	intergenic	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022826.2	FP671120.4	-/.	+/.	8:73820101	21:8214403	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000258677	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
UBE2W	FP671120.4	-/.	+/.	8:73820101	21:8214403	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000104343	ENSG00000278996	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NFE2L2	FP671120.4	-/.	+/.	2:177254991	21:8214401	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000116044	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP002961.1	FP671120.4	-/.	+/.	11:103278165	21:8214401	intron	intron	translocation/3'-3'	0	0	0	12	8	low	.	.	.	.	.	ENSG00000285878	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092317	11:88092364	intron	intron	duplication/ITD	0	0	0	513	1166	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1)	.	.	.
TSPAN14	TSPAN14	+/.	+/.	10:80511724	10:80511733	intron	intron	duplication/ITD	0	0	0	17	11	low	.	.	.	.	.	ENSG00000108219	ENSG00000108219	.	.	upstream	downstream	duplicates(4),low_entropy(2)	.	.	.
AC022826.2	FP236383.3	-/.	+/.	8:73820101	21:8397441	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
GPR39	AK6P1(88365),ZNF970P(3237264)	+/.	./.	2:132557875	12:34338323	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	DMRTC1B	+/.	+/.	21:8214785	X:72833386	intron	intron	translocation	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000184911	.	.	upstream	downstream	mismatches(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	8:73820101	21:8397441	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	FP236383.3	./.	+/.	3:103984260	21:8397440	intergenic	intron	translocation	0	0	0	83	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NFE2L2	FP236383.3	-/.	+/.	2:177254991	21:8397439	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000116044	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PDCD6	FP236383.3	+/.	+/.	5:282264	21:8442047	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000249915	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
DLG2	AC009161.1(206459),AC009110.1(32167)	-/.	./.	11:85484193	16:62564205	intron	intergenic	translocation	0	0	0	279	21	low	.	.	.	.	.	ENSG00000150672	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
UBE2W	5_8S_rRNA(1693),FP236383.3(122017)	-/.	./.	8:73820101	21:8258626	intron	intergenic	translocation	0	0	0	0	44	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AP002961.1	5_8S_rRNA(1691),FP236383.3(122019)	-/.	./.	11:103278165	21:8258624	intron	intergenic	translocation	0	0	0	12	44	low	.	.	.	.	.	ENSG00000285878	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
HOXC6	HOXC6	+/.	+/.	12:54008827	12:54008838	intron	intron	duplication/ITD	0	0	0	12	0	low	.	.	.	.	.	ENSG00000197757	ENSG00000197757	.	.	upstream	downstream	duplicates(8),low_entropy(2)	.	.	.
AC006288.1(46015),LINC01613(364913)	AP001599.1	./.	+/.	9:119570140	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
AC113367.2(131990),HINT1(14651)	AXL	./.	+/.	5:131140732	19:41230110	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000167601	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
NRIR	NRIR	-/.	-/.	2:6833197	2:6833214	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000225964	ENSG00000225964	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
AC007389.1	FP671120.4	+/.	+/.	2:65805820	21:8215807	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000204929	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
PRICKLE2-AS3	FP236383.3	+/.	+/.	3:64188277	21:8397834	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000226017	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
DLG2	DYNC2H1	-/.	+/.	11:85484193	11:103278165	intron	intron	duplication/5'-5'	0	0	0	279	12	low	.	.	.	.	.	ENSG00000150672	ENSG00000187240	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DLG2	AP002961.1	-/.	-/.	11:85484193	11:103278165	intron	intron	duplication	0	0	0	279	12	low	.	.	.	.	.	ENSG00000150672	ENSG00000285878	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	FP236383.3	./.	+/.	3:103984260	21:8441660	intergenic	intron	translocation	0	0	0	83	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TNFAIP3	PCA3	+/.	+/.	6:137873617	9:76808399	intron	intron	translocation/3'-3'	0	0	0	10	6	low	.	.	.	.	.	ENSG00000118503	ENSG00000225937	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC114321.1(205467),AC026403.1(21399)	AC092275.1	./.	+/.	5:166360906	16:85260115	intergenic	intron	translocation	0	0	0	10	19	low	.	.	.	.	.	.	ENSG00000287787	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ERN2	GSE1	-/.	+/.	16:23702061	16:85260115	intron	intron	deletion/3'-3'	0	0	0	8	19	low	.	.	.	.	.	ENSG00000134398	ENSG00000131149	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ERN2	AC092275.1	-/.	+/.	16:23702061	16:85260115	intron	intron	deletion/3'-3'	0	0	0	8	19	low	.	.	.	.	.	ENSG00000134398	ENSG00000287787	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ADGRG7	FP671120.4	+/.	+/.	3:100673210	21:8214398	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000144820	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
TATDN2	AC092275.1	+/.	+/.	3:10249511	16:85260116	CDS	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000157014	ENSG00000287787	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022384.1	AC092275.1	+/.	+/.	3:10249511	16:85260116	CDS	intron	translocation/3'-3'	0	0	0	0	19	low	.	.	.	.	.	ENSG00000272410	ENSG00000287787	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MSI2	IL1RAPL1	+/.	+/.	17:57361124	X:29436550	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153944	ENSG00000169306	.	.	upstream	downstream	mismatches(1)	.	.	.
MEGF6	AC105252.1(292284),AC079380.1(3754)	-/.	./.	1:3565377	4:133867492	intron	intergenic	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000162591	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DACT2(25891),AL138918.1(29029)	ENOSF1	./.	-/.	6:168345668	18:700993	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000132199	.	.	upstream	upstream	mismatches(1)	.	.	.
AL357075.4	NTRK2	-/.	+/.	6:154494759	9:84975073	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288520	ENSG00000148053	.	.	downstream	upstream	mismatches(1)	.	.	.
MEGF6	KIAA2012-AS1	-/.	-/.	1:3565378	2:202083777	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162591	ENSG00000222035	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(18863)	FP236383.3	./.	+/.	14:16038609	21:8400075	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MEGF6	DACT2(25892),AL138918.1(29028)	-/.	./.	1:3565381	6:168345669	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000162591	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105252.1(292284),AC079380.1(3754)	ENOSF1	./.	-/.	4:133867492	18:700996	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000132199	.	.	upstream	upstream	mismatches(1)	.	.	.
CALML3	AC093912.1(103817),AC073062.1(102173)	+/+	./-	10:5526398	2:13435500	3'UTR	intergenic	translocation	0	0	0	1	0	low	.	.	EF-hand_domain_pair(100%)|	.	.	ENSG00000178363	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02459(32871),TBX5(79270)	GPRC5B	./+	-/-	12:114274641	16:19884738	intergenic	5'UTR	translocation	0	0	0	4	0	low	.	.	|7_transmembrane_sweet-taste_receptor_of_3_GCPR(100%)	.	.	.	ENSG00000167191	.	.	downstream	downstream	mismatches(1)	.	.	.
KIAA2012	ENOSF1	+/.	-/.	2:202083777	18:700995	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000182329	ENSG00000132199	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104494),GPC1(41726)	ENOSF1	./.	-/.	2:240393937	18:700995	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000132199	.	.	upstream	upstream	mismatches(1)	.	.	.
SINHCAF	TUBBP8(43067),AC102941.2(7136)	-/.	./.	12:31326428	15:29657341	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139146	.	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
EXT1(924),SAMD12(76705)	AC025580.2	./.	+/.	8:118112750	15:45462231	intergenic	intron	translocation	0	0	0	16	29	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
EXT1(924),SAMD12(76705)	AC025580.2	./.	+/.	8:118112750	15:45462159	intergenic	intron	translocation	0	0	0	16	28	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),low_entropy(1)	.	.	.
EXT1(924),SAMD12(76705)	AC025580.2	./.	+/.	8:118112750	15:45463201	intergenic	intron	translocation	0	0	0	16	28	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(3),low_entropy(1)	.	.	.
EXT1(924),SAMD12(76705)	AC025580.2	./.	+/.	8:118112750	15:45462788	intergenic	intron	translocation	0	0	0	16	7	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(3),low_entropy(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	FP671120.4	./.	+/.	3:103984260	21:8214402	intergenic	intron	translocation	0	0	0	83	8	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462422	intron	intron	translocation/5'-5'	0	0	0	154	12	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	mismatches(2)	.	.	.
AC092807.3	BANF2(94730),AL035045.1(56762)	-/.	./.	1:85576727	20:17830601	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000282057	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ERBB4	MT-RNR2	-/.	+/.	2:211775230	MT:2442	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000178568	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC02054(33634),AC128714.2(7959)	CDK20	./.	-/.	3:184491525	9:87972895	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000156345	.	.	downstream	downstream	mismatches(1)	.	.	.
BTBD11	FP236383.3	+/.	+/.	12:107400730	21:8398132	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151136	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
NRG1	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	8:32548059	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000157168	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NRG1	FP236383.3	+/.	+/.	8:32548059	21:8397829	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000157168	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL356131.1(332834),MTRNR2L9(183)	MTRNR2L8	./.	-/.	6:61574145	11:10508684	intergenic	5'UTR	translocation	0	0	0	65	8	low	.	.	.	.	.	.	ENSG00000255823	.	.	upstream	downstream	mismatches(1)	.	.	.
NRG1	FP236383.3	+/.	+/.	8:32548059	21:8442059	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000157168	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DTNBP1(49300),ARPC3P5(222424)	AC073048.1(46917),GNAI1(46096)	./.	./.	6:15712358	7:79721932	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397834	21:8397852	intron	intron	duplication/ITD	0	0	0	1126	6042	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	hairpin(1),merge_adjacent	.	.	.
FAM183DP(41788),IL1RL1(19459)	FAM183DP(41798),IL1RL1(19449)	./.	./.	2:102292043	2:102292053	intergenic	intergenic	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
PDE3A	MT-RNR2	+/.	+/.	12:20507494	MT:2612	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000172572	ENSG00000210082	.	.	upstream	upstream	duplicates(2),uninteresting_contigs(2)	.	.	.
LINC01691(2954621),AC242852.1(18808035)	RCAN2	./.	-/.	1:124535145	6:46469324	intergenic	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	.	ENSG00000172348	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
RCAN2	AC073534.1(2871314),ERVK-28(603744)	-/.	./.	6:46469323	19:27034739	intron	intergenic	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172348	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
FOXI3	CHST15(269183),OAT(34522)	-/.	./.	2:88452450	10:124362781	CDS	intergenic	translocation	0	0	0	2	5	low	.	.	.	.	.	ENSG00000214336	.	.	.	downstream	downstream	duplicates(1),homopolymer(1)	.	.	.
RCAN2	AC073534.1(2777162),ERVK-28(697896)	-/.	./.	6:46469324	19:26940587	intron	intergenic	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172348	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021158	11:41021215	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(105),low_entropy(4)	.	.	.
ZP3	FP236383.3	+/.	+/.	7:76423247	21:8444310	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000188372	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RCAN2	HRAT17(32706),AC073346.2(46741)	-/.	./.	6:46469324	7:113028383	intron	intergenic	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172348	.	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
DDX12P	AC027237.3	-/.	-/.	12:9426556	15:69399191	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000214826	ENSG00000259426	.	.	downstream	downstream	mismatches(1)	.	.	.
Y_RNA(263921),AC026320.2(47191)	LYSMD2	./.	-/.	3:191905158	15:51748671	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000140280	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
PHKG2	FP236383.3	+/.	+/.	16:30749090	21:8440449	intron	intron	translocation/5'-5'	0	0	0	221	0	low	.	.	.	.	.	ENSG00000156873	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
SEMA5A	KRT18P55	-/.	-/.	5:9105265	17:28307146	intron	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000112902	ENSG00000265480	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022709.1(43512),AC021393.1(109301)	ANKRD11	./.	-/.	8:59937454	16:89408492	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000167522	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
GPR141	LMX1B	+/.	+/.	7:37710990	9:126671248	intron	intron	translocation/5'-5'	0	0	0	0	21	low	.	.	.	.	.	ENSG00000187037	ENSG00000136944	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR9-3HG	AXIN1	+/.	-/.	15:89384541	16:338537	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000255571	ENSG00000103126	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC02339(25673),RAC1P8(351531)	AC005357.2	./.	+/.	13:61453619	19:27961840	intergenic	intron	translocation	0	0	0	3	4	low	.	.	.	.	.	.	ENSG00000267623	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF658	AL359508.1(15427),MGMT(71010)	+/.	./.	9:66931106	10:129396180	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000274349	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC106886.2	AC006262.2	+/.	-/.	16:30749091	19:46177264	intron	intron	translocation	0	0	0	221	0	low	.	.	.	.	.	ENSG00000260899	ENSG00000269729	.	.	downstream	downstream	mismatches(1)	.	.	.
SKAP2	C11orf53	-/.	+/.	7:26763284	11:111249043	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000005020	ENSG00000150750	.	.	upstream	upstream	mismatches(1)	.	.	.
CLIP2	LINC02653	+/+	-/-	7:74289563	10:90581091	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000106665	ENSG00000236373	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP004606.1	AP004606.1	+/.	+/.	11:133544828	11:133544841	intron	intron	duplication/ITD	0	0	0	6	6	low	.	.	.	.	.	ENSG00000287068	ENSG00000287068	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
CLIP2	BLOC1S5-TXNDC5	+/+	-/-	7:74289563	6:7978119	5'UTR	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000106665	ENSG00000259040	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872803	16:30749081	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
PRDM16	Y_RNA(5149),Y_RNA(12341)	+/.	./.	1:3331292	16:30459246	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000142611	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HIBADH(24679),TAX1BP1-AS1(45502)	LMX1B	./.	+/.	7:27687562	9:126671248	intergenic	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	.	ENSG00000136944	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK14	5_8S_rRNA(2084),FP236383.3(121626)	+/+	./+	7:91209432	21:8259017	3'UTR	intergenic	translocation	0	0	0	5	5911	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000058091	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
NRIR	NRIR	-/.	-/.	2:6833197	2:6833300	intron	intron	duplication	0	0	0	1	0	low	.	.	.	.	.	ENSG00000225964	ENSG00000225964	.	.	upstream	downstream	mismatches(1)	.	.	.
AL009177.1	C16orf72(21756),RPL21P119(13011)	+/.	./.	6:14487262	16:9143391	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000286277	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL031123.5	LASTR	+/+	-/-	6:6731180	10:5616508	exon	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000288046	ENSG00000242147	.	.	downstream	downstream	inconsistently_clipped(1),mismatches(1)	.	.	.
SYNDIG1	FP236383.3	+/.	+/.	20:24618359	21:8438949	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000101463	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SREBF2-AS1	AC104117.3	-/-	+/+	22:41833576	5:178973133	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	ENSG00000254035	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ZNF536(14653),AC011507.1(122784)	FP236383.3	./.	+/.	19:30728191	21:8397816	intergenic	intron	translocation	0	0	0	4	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
LINC02663(164937),LINC02670(15725)	FP671120.4	./.	+/.	10:10042997	21:8214402	intergenic	intron	translocation	0	0	0	5	8	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
THSD7B	AL161941.1	+/.	-/.	2:136863905	20:16258605	intron	intron	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000144229	ENSG00000287410	.	.	upstream	downstream	mismatches(1)	.	.	.
AC005833.1	AC005833.1	+/.	+/.	12:4702122	12:4702202	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255639	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
PRDM16	LASTR	+/.	-/.	1:3331293	10:5616531	intron	intron	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000142611	ENSG00000242147	.	.	upstream	downstream	duplicates(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262489	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	AL049792.1(9699),RAP2C(61973)	+/.	./.	21:8400584	X:132141051	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL132819.1(11741),SETD3(53992)	AL132819.1(11796),SETD3(53937)	./.	./.	14:99343756	14:99343811	intergenic	intergenic	duplication/ITD	0	0	0	96	100	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AL031123.5	LASTR	+/+	-/-	6:6731180	10:5616527	exon	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000288046	ENSG00000242147	.	.	downstream	downstream	duplicates(1),inconsistently_clipped(1)	.	.	.
AL031123.5	LASTR	+/+	-/-	6:6731180	10:5616471	exon	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000288046	ENSG00000242147	.	.	downstream	downstream	duplicates(1)	.	.	.
AL583804.1	SLC12A8	-/.	-/.	1:166401557	3:125150511	intron	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	ENSG00000225325	ENSG00000221955	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL031123.5	LASTR	+/+	-/-	6:6731180	10:5616416	exon	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288046	ENSG00000242147	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
CALN1	CA5B	-/.	+/.	7:72187736	X:15728794	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000183166	ENSG00000169239	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23081),AC108865.1(141166)	RADIL	./.	-/.	4:186749803	7:4825129	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000157927	.	.	upstream	upstream	mismatches(1)	.	.	.
DLEU7	MT-RNR1	-/.	+/.	13:50533058	MT:1503	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000186047	ENSG00000211459	.	.	upstream	upstream	duplicates(6),uninteresting_contigs(1)	.	.	.
HIPK3(18996),KIAA1549L(89)	FP671120.4	./.	+/.	11:33376019	21:8207899	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	AP003390.1(4506),AP001994.1(77175)	-/.	./.	6:42262464	11:119744129	intron	intergenic	translocation	0	0	0	2363	3002	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	low_entropy	.	.	.
AC079949.3	FP236383.3	+/.	+/.	12:127165975	21:8397818	intron	intron	translocation	0	1	0	0	6042	low	.	.	.	.	.	ENSG00000286016	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
AC060809.1	AC023034.1	+/.	+/.	15:81683456	15:81683469	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259594	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
STXBP6	FP236383.3	-/.	+/.	14:24854249	21:8401909	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168952	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TIMM50	SLC9A1	+/+	-/-	19:39480723	1:27160544	CDS	intron	translocation	0	0	0	1	0	low	.	.	|Regulatory_region_of_Na+/H+_exchanger_NHE_binds_to_calmodulin(100%),Sodium/hydrogen_exchanger_family(100%)	.	.	ENSG00000105197	ENSG00000090020	.	.	downstream	downstream	mismatches(1)	.	.	.
AL157371.1(67423),AL109615.3(75967)	FP236383.3	./.	+/.	6:43919756	21:8442063	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
STXBP6	FP236383.3	-/.	+/.	14:24854249	21:8446140	intron	intron	translocation/3'-3'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000168952	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01194(30562),LINC02220(79143)	LINC01194(30577),LINC02220(79128)	./.	./.	5:12834925	5:12834940	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(2)	.	.	.
AL033384.1	AC079949.3	+/.	+/.	6:53961499	12:127165978	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236740	ENSG00000286016	.	.	downstream	downstream	mismatches(1)	.	.	.
SUSD5(52300),FBXL2(5915)	AC023632.3(700),AC023632.4(3452)	./.	./.	3:33271110	8:94590959	intergenic	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02642	CLIP3	-/.	-/.	10:7465066	19:36026173	intron	CDS	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000232591	ENSG00000105270	.	.	upstream	downstream	mismatches(1)	.	.	.
MLIP	FP236383.3	+/.	+/.	6:53961499	21:8446140	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000146147	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL033384.1	FP236383.3	+/.	+/.	6:53961499	21:8446140	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000236740	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ADH1B	MAN1A1	-/.	-/.	4:99309425	6:119241889	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000196616	ENSG00000111885	.	.	downstream	downstream	mismatches(1)	.	.	.
BMPR1B	BMPR1B	+/.	+/.	4:94902248	4:94902263	intron	intron	duplication/ITD	0	0	0	345	345	low	.	.	.	.	.	ENSG00000138696	ENSG00000138696	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
MLIP	FP671120.4	+/.	+/.	6:53961499	21:8218870	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000146147	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079949.3	KIF18BP1(8106),AC106785.1(68982)	+/.	./.	12:127165978	16:35653286	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286016	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MCTP1	FRMD5(93317),GOLM2(131)	-/.	./.	5:94947578	15:44288588	intron	intergenic	translocation	0	0	0	15	3	low	.	.	.	.	.	ENSG00000175471	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003390.1(4505),AP001994.1(77176)	FXNP1(22668),NRXN3(87427)	./.	./.	11:119744128	14:78082946	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC104042.1(183659),AC061997.1(820599)	FP236383.3	./.	+/.	11:36881526	21:8401909	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PHKG2	AC106886.2	+/.	+/.	16:30748999	16:30749015	intron	intron	duplication	0	0	0	188	25	low	.	.	.	.	.	ENSG00000156873	ENSG00000260899	.	.	upstream	downstream	low_entropy(1)	.	.	.
CARMN(7002),CSNK1A1(53145)	FP236383.3	./.	+/.	5:149439837	21:8401909	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CARMN(7002),CSNK1A1(53145)	FP236383.3	./.	+/.	5:149439837	21:8446140	intergenic	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC104109.4	STAB1	-/-	+/+	5:134225650	3:52513883	intron	CDS/splice-site	translocation	0	0	0	0	0	low	.	.	|EGF_domain(67%),Extracellular_link_domain(100%),Fasciclin_domain(48%)	.	.	ENSG00000273345	ENSG00000010327	.	.	upstream	upstream	mismatches(1)	.	.	.
FP326651.1(1988),Y_RNA(175024)	DDB2	./.	+/.	9:65398360	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
PNOC	FP236383.3	+/.	+/.	8:28332986	21:8401909	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168081	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021678.2	FP236383.3	-/.	+/.	8:28332986	21:8446140	intron	intron	translocation	0	0	0	0	11	low	.	.	.	.	.	ENSG00000253690	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	21:8209829	21:8259024	intron	intergenic	inversion	0	0	0	48	6	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ABCD3	AL591178.1	+/+	+/-	1:94418450	1:24060637	5'UTR	intron	inversion/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000117528	ENSG00000225315	.	.	downstream	downstream	mismatches(1)	.	.	.
PNOC	FP236383.3	+/.	+/.	8:28332986	21:8446140	intron	intron	translocation/3'-3'	0	0	0	0	11	low	.	.	.	.	.	ENSG00000168081	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC005523.2	ADCY1	-/-	+/+	19:4792519	7:45682482	exon	intron	translocation	0	0	0	0	0	low	.	.	|Adenylate_and_Guanylate_cyclase_catalytic_domain(52%)	.	.	ENSG00000269604	ENSG00000164742	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS18P6(259152),MTHFD2P1(222894)	GATA4	./.	+/.	3:95431529	8:11692771	intergenic	intron	translocation	0	0	0	45	1	low	.	.	.	.	.	.	ENSG00000136574	.	.	downstream	downstream	mismatches(1)	.	.	.
AC026202.1(36559),AC087857.1(669522)	FP236383.3	./.	+/.	3:5293320	21:8401909	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ATF6	AC079949.3	+/.	+/.	1:161793158	12:127165978	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000118217	ENSG00000286016	.	.	downstream	downstream	mismatches(1)	.	.	.
LMNB1	LINC00841(80303),AL137026.2(198197)	+/+	./+	5:126776742	10:44061405	5'UTR	intergenic	translocation	0	0	0	18	0	low	.	.	.	.	.	ENSG00000113368	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
ATF6	FP236383.3	+/.	+/.	1:161793158	21:8401909	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000118217	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC139365.1(221268),AC118650.1(2132945)	5_8S_rRNA(2095),FP236383.3(121615)	./.	./.	8:43895859	21:8259028	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC093912.1(103815),AC073062.1(102175)	RPL29(29541),AC115284.3(21327)	./.	./.	2:13435498	3:52025436	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093912.1(103816),AC073062.1(102174)	MIR548G(65089),AC010683.1(16168)	./.	./.	2:13435499	4:147409806	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC239799.1(36126),RNU6-1071P(14663)	GCK	./.	-/.	1:146273933	7:44149936	intergenic	intron	translocation	0	0	0	9	7	low	.	.	.	.	.	.	ENSG00000106633	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.3(3895),FP671120.7(548)	5_8S_rRNA(2085),FP236383.3(121625)	./.	./.	21:8254044	21:8259018	intergenic	intergenic	inversion	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(2)	.	.	.
SMKR1(18214),AC078846.1(73416)	AC025580.2	./.	+/.	7:129531132	15:45463189	intergenic	intron	translocation	0	0	0	68	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262488	6:42262497	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
BANF2(94731),AL035045.1(56761)	FP236383.3	./.	+/.	20:17830602	21:8400362	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ZNF462	ZNF462	+/.	+/.	9:106864039	9:106864056	intron	intron	duplication/ITD	0	0	0	38	27	low	.	.	.	.	.	ENSG00000148143	ENSG00000148143	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC018678.1(19896),RNU6-692P(236399)	AL451069.2(904),AL451069.3(11876)	./.	./.	2:147171943	10:132421857	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRDN	GHRH(6765),MANBAL(21038)	-/.	./.	6:123573888	20:37268600	intron	intergenic	translocation	0	1	0	0	0	low	.	.	.	.	.	ENSG00000186439	.	.	.	upstream	downstream	duplicates(2),min_support	.	.	.
HFM1	AC022335.1	-/.	+/.	1:91387408	12:21146487	intron	intron	translocation	0	0	0	6	7	low	.	.	.	.	.	ENSG00000162669	ENSG00000257062	.	.	downstream	downstream	mismatches(1)	.	.	.
BANF2(94731),AL035045.1(56761)	FP236383.3	./.	+/.	20:17830602	21:8444597	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	ATP2B3	+/.	+/.	21:8214791	X:153545091	intron	intron	translocation/3'-3'	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000067842	.	.	upstream	upstream	mismatches(1)	.	.	.
TMC4	IQSEC1	-/-	-/-	19:54168416	3:13200293	exon	intron	translocation	0	0	0	4	0	low	.	.	|PH_domain(100%),Sec7_domain(100%)	.	.	ENSG00000167608	ENSG00000144711	.	.	upstream	downstream	homopolymer(1)	.	.	.
FHIT	AL357094.1(16891),KRT8P1(104286)	-/.	./.	3:61042066	14:38622989	5'UTR	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FHIT	ADNP	-/.	-/.	3:61042066	20:50930467	5'UTR	intron	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	ENSG00000101126	.	.	downstream	downstream	mismatches(1)	.	.	.
AC105252.1(292285),AC079380.1(3753)	PPP2CA	./.	-/.	4:133867493	5:134225648	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000113575	.	.	upstream	upstream	mismatches(1)	.	.	.
FHIT	AL161756.1(65),TEX21P(2969)	-/.	./.	3:61042065	14:64338704	5'UTR	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FHIT	PTPRN2(221),LINC01022(2585)	-/.	./.	3:61042065	7:158588044	5'UTR	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FHIT	LCOR	-/.	+/.	3:61042065	10:96833251	5'UTR	CDS	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000189283	ENSG00000196233	.	.	downstream	upstream	mismatches(1)	.	.	.
IL6RP1(12016),AL161629.2(13659)	ADAMTS5(58793),GPX1P2(117463)	./.	./.	9:90094585	21:27025881	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
FHIT	FP671120.4	-/.	+/.	3:61042065	21:8217327	5'UTR	intron	translocation/3'-3'	0	0	0	15	4	low	.	.	.	.	.	ENSG00000189283	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(20671),AC016910.1(19041)	5_8S_rRNA(3237),FP236383.3(120473)	./.	./.	2:143918032	21:8260170	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FHIT	FP236383.3	-/.	+/.	3:61042065	21:8444597	5'UTR	intron	translocation/3'-3'	0	0	0	15	4	low	.	.	.	.	.	ENSG00000189283	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC2A9	CBARP	-/.	-/.	4:9774827	19:1237715	intron	intron	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	ENSG00000099625	.	.	downstream	upstream	mismatches(1)	.	.	.
AC098650.1	CNTFR(1377),RPP25L(18969)	+/.	./.	3:28559019	9:34591517	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283563	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SLAIN1	BANF2(94731),AL035045.1(56761)	+/.	./.	13:77698623	20:17830602	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000139737	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC2A9	AL357094.1(16891),KRT8P1(104286)	-/.	./.	4:9774829	14:38622989	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CES5A(24340),AC040168.1(3638)	FP236383.3	./.	+/.	16:55980371	21:8437150	intergenic	intron	translocation	0	0	0	0	30	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
SLC2A9	AL161756.1(65),TEX21P(2969)	-/.	./.	4:9774828	14:64338704	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLC2A9	LCOR	-/.	+/.	4:9774828	10:96833251	intron	CDS	translocation/3'-3'	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	ENSG00000196233	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4476),AP001994.1(77205)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:119744099	14:106419138	intergenic	intergenic	translocation	0	0	0	3711	192	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AC092807.3	SLC2A9	-/.	-/.	1:85576727	4:9774829	exon	intron	translocation/3'-3'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000282057	ENSG00000109667	.	.	downstream	downstream	mismatches(1)	.	.	.
AC078923.1	LINC00656	-/.	-/.	12:75719991	20:23131310	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000258077	ENSG00000233746	.	.	downstream	downstream	mismatches(1)	.	.	.
CCM2L	FP236383.3	+/+	+/+	20:32014991	21:8444185	CDS	intron	translocation	0	0	0	0	214	low	.	.	.	.	.	ENSG00000101331	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MIR212(624),HIC1(3150)	DLX4(13689),DLX3(1357)	./.	./.	17:2051004	17:49988648	intergenic	intergenic	duplication	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
CFAP58	AP003390.1(4462),AP001994.1(77219)	+/.	./.	10:104396370	11:119744085	intron	intergenic	translocation	0	0	0	558	3711	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
DLX4(13690),DLX3(1356)	CBARP	./.	-/.	17:49988649	19:1237715	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000099625	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479889	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
LCOR	BANF2(94731),AL035045.1(56761)	+/.	./.	10:96833251	20:17830602	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196233	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LSP1	FP671120.4	+/.	+/.	11:1851888	21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000130592	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SYT7	IGHVIII-38-1(817),IGHV4-39(2595)	-/.	./.	11:61538429	14:106419116	intron	intergenic	translocation	0	0	0	1	162	low	.	.	.	.	.	ENSG00000011347	.	.	.	downstream	upstream	mismatches	.	.	.
PRKG2	AMD1P1(55146),AL590032.1(140925)	-/.	./.	4:81215082	10:20406246	5'UTR	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000138669	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NOS1	RPSAP40(64258),UST(34175)	-/-	./+	12:117265422	6:148712855	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|	.	.	ENSG00000089250	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HECW1	CFAP58	+/.	+/.	7:43336119	10:104396370	intron	intron	translocation/3'-3'	0	0	0	25	558	low	.	.	.	.	.	ENSG00000002746	ENSG00000120051	.	.	upstream	upstream	low_entropy	.	.	.
RUFY4(18122),CXCR2(16586)	LINC02530(23827),PHACTR1(107323)	./.	./.	2:218108703	6:12609231	intergenic	intergenic	translocation	0	0	0	193	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
RUFY4(18122),CXCR2(16586)	CMTM8	./.	+/.	2:218108703	3:32347437	intergenic	intron	translocation	0	0	0	193	1	low	.	.	.	.	.	.	ENSG00000170293	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL033504.1	CFAP58	+/.	+/.	6:147790826	10:104396453	intron	intron	translocation/5'-5'	0	0	0	25	554	low	.	.	.	.	.	ENSG00000227681	ENSG00000120051	.	.	downstream	downstream	low_entropy	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462222	intron	intron	translocation/5'-5'	0	0	0	154	29	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	mismatches(2)	.	.	.
MED27(46981),NTNG2(34828)	MSRB3	./.	+/.	9:132126848	12:65428728	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000174099	.	.	upstream	downstream	mismatches(1)	.	.	.
MORN1	FP236383.3	-/.	+/.	1:2342558	21:8442044	intron	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000116151	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
GAP43	FP236383.3	+/.	+/.	3:115698680	21:8400584	intron	intron	translocation/3'-3'	0	0	0	4	7	low	.	.	.	.	.	ENSG00000172020	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
PNLDC1(51820),AL035691.1(18464),MAS1(18464)	ARL6IP1P3(89047),LINC02720(8165)	./.	./.	6:159872524	11:80743035	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC005833.1	AC005833.1	+/.	+/.	12:4702157	12:4702167	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255639	.	.	upstream	downstream	low_entropy(1)	.	.	.
LPA	AC044893.1(92009),RN7SKP294(9027)	-/.	./.	6:160606938	8:49321183	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198670	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC145350.2	FP236383.3	-/.	+/.	16:33059130	21:8397814	intron	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000260141	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
ITPRID1	E2F7(376),AC079030.1(63233)	+/.	./.	7:31553097	12:77065945	CDS	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000180347	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397441	21:8438953	intron	intron	inversion/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(4),mismatches(2)	.	.	.
ITPRID1	CCNH	+/+	-/-	7:31553112	5:87407427	CDS	intron	translocation	0	0	0	3	0	low	.	.	|Cyclin_C-terminal_domain(85%)	.	.	ENSG00000180347	ENSG00000134480	.	.	downstream	downstream	mismatches(1)	.	.	.
TEDC1	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	14:105494501	21:8259024	exon	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000185347	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	CFAP58	+/.	+/.	2:101785689	10:104396370	intron	intron	translocation/3'-3'	0	0	0	496	558	low	.	.	.	.	.	ENSG00000071054	ENSG00000120051	.	.	upstream	upstream	low_entropy	.	.	.
VAV3	OTUD4(35726),RPS23P4(53495)	-/.	./.	1:107670554	4:145216315	intron	intergenic	translocation	0	0	0	20	4	low	.	.	.	.	.	ENSG00000134215	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL590807.1	FP236383.3	-/.	+/.	13:80707413	21:8438949	intron	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000286746	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
CADM2	OTUD4(35726),RPS23P4(53495)	+/.	./.	3:85836872	4:145216315	intron	intergenic	translocation	0	0	0	19	4	low	.	.	.	.	.	ENSG00000175161	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
VAV3	RNA5SP144(230601),AC011592.1(24590)	-/.	./.	1:107670554	3:144417621	intron	intergenic	translocation	0	0	0	20	6	low	.	.	.	.	.	ENSG00000134215	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CADM2	RNA5SP144(230601),AC011592.1(24590)	+/.	./.	3:85836872	3:144417621	intron	intergenic	duplication	0	0	0	19	6	low	.	.	.	.	.	ENSG00000175161	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP144(230603),AC011592.1(24588)	GRM3	./.	+/.	3:144417623	7:86815868	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000198822	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
RBBP4	IGF2R	+/+	+/+	1:32651578	6:159969243	5'UTR	5'UTR	translocation	0	0	0	0	0	low	.	.	|Cation-independent_mannose-6-phosphate_receptor_repeat(100%),Fibronectin_type_II_domain(100%)	.	.	ENSG00000162521	ENSG00000197081	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM132C	INAFM2	+/+	+/-	12:128616285	15:40324544	CDS	3'UTR	translocation/5'-5'	0	0	0	0	3	low	.	.	Mature_oligodendrocyte_transmembrane_protein__TMEM132D__N-term(100%)|	.	.	ENSG00000181234	ENSG00000259330	.	.	downstream	downstream	mismatches(1)	.	.	.
INAFM2	NOP53-AS1	+/+	-/+	15:40324544	19:47760435	3'UTR	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	TRP-interacting_helix(100%)|	.	.	ENSG00000259330	ENSG00000269656	.	.	downstream	upstream	mismatches(1)	.	.	.
RBBP4	INAFM2	+/+	+/+	1:32651578	15:40324525	5'UTR	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162521	ENSG00000259330	.	.	downstream	upstream	mismatches(1)	.	.	.
RBBP4	HPAT5	+/+	+/-	1:32651579	6:167236383	5'UTR	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000162521	ENSG00000280707	.	.	downstream	downstream	mismatches(1)	.	.	.
GALNS	FP236383.3	-/.	+/.	16:88834636	21:8394736	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000141012	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
NOS1AP	FP236383.3	+/.	+/.	1:162359727	21:8438949	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000198929	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL033384.1	FP671120.4	+/.	+/.	6:53961499	21:8218870	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000236740	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AL590807.1	FP236383.3	-/.	+/.	13:80707412	21:8394736	intron	intron	translocation/3'-3'	0	0	0	0	154	low	.	.	.	.	.	ENSG00000286746	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
TRRAP	MECP2	+/+	-/+	7:98949505	X:154125517	CDS	intron	translocation/5'-5'	0	0	0	0	10	low	.	.	.	.	.	ENSG00000196367	ENSG00000169057	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
DPP9-AS1	RPL34P29(4462),AC007603.3(15171)	+/+	./+	19:4685398	16:49939814	exon	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000205790	.	.	.	downstream	upstream	mismatches(1)	.	.	.
IL1R1	FP236383.3	+/.	+/.	2:102140326	21:8442047	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000115594	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL590807.1	FP671120.4	-/.	+/.	13:80707412	21:8211701	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286746	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL590807.1	FP671120.7(393),5_8S_rRNA(874)	-/.	./.	13:80707412	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286746	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AL590807.1	FP236383.3	-/.	+/.	13:80707412	21:8438949	intron	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000286746	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
ADAMTS8(19561),ADAMTS15(804)	FP236383.3	./.	+/.	11:130448170	21:8394736	intergenic	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
ADAMTS8(19561),ADAMTS15(804)	FP671120.4	./.	+/.	11:130448170	21:8211701	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
ADAMTS8(19561),ADAMTS15(804)	FP671120.7(393),5_8S_rRNA(874)	./.	./.	11:130448170	21:8255907	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
GALNS	FP671120.4	-/.	+/.	16:88834636	21:8211701	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000141012	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
TMEM41A	FP236383.3	-/.	+/.	3:185498083	21:8394737	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000163900	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
TMEM41A	FP671120.7(394),5_8S_rRNA(873)	-/.	./.	3:185498083	21:8255908	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163900	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC117464.1(63136),LINC00971(523850)	ANK2	./.	+/.	3:84114555	4:113275782	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000145362	.	.	downstream	upstream	mismatches(1)	.	.	.
SPTB	AC021506.1	-/.	-/.	14:64825795	18:75862751	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000070182	ENSG00000266460	.	.	downstream	upstream	mismatches(1)	.	.	.
CT75(36424),Y_RNA(15572)	CRYBB1	./.	-/.	2:222389413	22:26606612	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100122	.	.	downstream	upstream	mismatches(1)	.	.	.
AC116366.2	FP236383.3	+/.	+/.	5:132496185	21:8394737	intron	intron	translocation	0	0	0	0	154	low	.	.	.	.	.	ENSG00000283782	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81565285	15:81565363	intron	intron	duplication/ITD	0	0	0	14	14	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC116366.2	FP671120.7(394),5_8S_rRNA(873)	+/.	./.	5:132496185	21:8255908	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000283782	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC007405.3	AC064874.1	+/.	-/.	2:170768859	2:235775619	intron	intron	deletion/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000239467	ENSG00000222007	.	.	downstream	upstream	mismatches(1)	.	.	.
HFM1	AC016687.3	-/.	-/.	1:91387408	4:34005923	intron	intron	translocation/3'-3'	0	0	0	6	10	low	.	.	.	.	.	ENSG00000162669	ENSG00000250954	.	.	downstream	downstream	mismatches(1)	.	.	.
AC002463.1	C16orf82(51815),EEF1A1P38(12503)	+/.	./.	7:112751479	16:27120980	intron	intergenic	translocation	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC116366.2	FP236383.3	+/.	+/.	5:132496185	21:8438950	intron	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	ENSG00000283782	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
LACRT(1664),DCD(8030)	RNF212B	./.	+/.	12:54636559	14:23198768	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000215277	.	.	downstream	downstream	mismatches(1)	.	.	.
SSRP1	FP236383.3	-/.	+/.	11:57335798	21:8438949	5'UTR	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000149136	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
SEPTIN8	AC063949.2	-/.	+/.	5:132788158	12:92447496	intron	intron	translocation	0	0	0	26	6	low	.	.	.	.	.	ENSG00000164402	ENSG00000266923	.	.	upstream	upstream	low_entropy	.	.	.
RNF10	AC091182.1(10752),AC091182.2(62696)	+/+	./+	12:120534646	8:37342743	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000022840	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	MYL6P1(8716),AGPAT3(165)	+/.	./.	21:8211701	21:43865058	intron	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP671120.7(393),5_8S_rRNA(874)	MYL6P1(8716),AGPAT3(165)	./.	./.	21:8255907	21:43865058	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	CSAG3	./.	+/.	3:137274346	X:152758812	intergenic	intron	translocation	0	0	0	71	11	low	.	.	.	.	.	.	ENSG00000268916	.	.	upstream	upstream	mismatches	.	.	.
FP236383.3	MYL6P1(8716),AGPAT3(165)	+/.	./.	21:8438949	21:43865058	intron	intergenic	inversion	0	0	0	139	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
MAP4K4	CFAP58	+/.	+/.	2:101785685	10:104396370	intron	intron	translocation/3'-3'	0	0	0	496	558	low	.	.	.	.	.	ENSG00000071054	ENSG00000120051	.	.	upstream	upstream	low_entropy	.	.	.
RPL36AP40(36654),AC100770.1(5271)	KC6(31813),NPM1P1(125164)	./.	./.	11:25625449	18:41663998	intergenic	intergenic	translocation	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
GALNS	FP236383.3	-/.	+/.	16:88834358	21:8394736	intron	intron	translocation	0	0	0	4	154	low	.	.	.	.	.	ENSG00000141012	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
GALNS	FP236383.3	-/.	+/.	16:88834358	21:8438949	intron	intron	translocation	0	0	0	4	139	low	.	.	.	.	.	ENSG00000141012	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
UXS1	ACTN3	-/-	+/-	2:106194191	11:66546996	CDS	CDS	translocation/5'-5'	0	0	0	2	0	low	.	.	UDP-glucuronate_decarboxylase_N-terminal(16%)|	.	.	ENSG00000115652	ENSG00000248746	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP001823.1(3440),ELMOD1(748)	FXNP1(22683),NRXN3(87412)	./.	./.	11:107590343	14:78082961	intergenic	intergenic	translocation	0	0	0	1914	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
CWC22(210065),AC012669.1(255775)	FP671120.4	./.	+/.	2:180217362	21:8217544	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
NAALADL2	5_8S_rRNA(1685),FP236383.3(122025)	+/.	./.	3:175349066	21:8258618	intron	intergenic	translocation	0	0	0	4	543	low	.	.	.	.	.	ENSG00000177694	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PAXBP1(61),C21orf62-AS1(247)	PAXBP1(70),C21orf62-AS1(238)	./.	./.	21:32771853	21:32771862	intergenic	intergenic	duplication/ITD	0	0	0	445	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PAXBP1(53),C21orf62-AS1(255)	PAXBP1(76),C21orf62-AS1(232)	./.	./.	21:32771845	21:32771868	intergenic	intergenic	duplication/ITD	0	0	0	445	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC008269.1	AC002463.1	+/.	+/.	2:206862123	7:112751480	intron	intron	translocation	0	0	0	0	39	low	.	.	.	.	.	ENSG00000229321	ENSG00000223646	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
IFNGR1(26702),OLIG3(246048)	LINC02553(348040),RNA5SP347(49437)	./.	./.	6:137246151	11:97608027	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PPM1L	INPP4B	+/.	-/.	3:160947688	4:142713193	intron	intron	translocation/3'-3'	0	0	0	0	17	low	.	.	.	.	.	ENSG00000163590	ENSG00000109452	.	.	upstream	downstream	mismatches(1)	.	.	.
ETNK2	LIN52(32938),VSX2(5276)	-/-	./-	1:204151711	14:74234173	CDS	intergenic	translocation	0	0	0	0	36	low	.	.	.	.	.	ENSG00000143845	.	.	.	upstream	downstream	mismatches(3)	.	.	.
FCN1(14895),AL353611.1(3717)	AC108448.1(3823),MRGPRG(24192)	./.	./.	9:134932807	11:3193752	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02880(9169),HDAC2(2217)	LINC02620	./.	-/.	6:113930811	10:104479908	intergenic	intron	translocation	0	0	0	7	1761	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
PNPLA4	PNPLA4	-/-	-/-	X:7899627	X:7899680	3'UTR	3'UTR	duplication/ITD	0	0	0	8	8	low	.	.	Patatin-like_phospholipase(100%)|	.	.	ENSG00000006757	ENSG00000006757	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
APBB1	PITPNC1	-/-	+/-	11:6410697	17:67378806	CDS	intron	translocation/5'-5'	0	0	0	4	1	low	.	.	.	.	.	ENSG00000166313	ENSG00000154217	.	.	upstream	downstream	mismatches(1)	.	.	.
FAM171B(5926),ZSWIM2(55590)	IQCH	./.	+/.	2:186771885	15:67310435	intergenic	intron	translocation	0	0	0	4	40	low	.	.	.	.	.	.	ENSG00000103599	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAM171B(5926),ZSWIM2(55590)	IQCH-AS1	./.	-/.	2:186771885	15:67310435	intergenic	intron	translocation	0	0	0	4	40	low	.	.	.	.	.	.	ENSG00000259673	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OR2T12	FP671120.3(464),FP671120.7(3979)	-/.	./.	1:248296452	21:8250613	intron	intergenic	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000177201	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
IQCH-AS1	AC009158.1	-/.	+/.	15:67310425	16:26333540	intron	intron	translocation/5'-5'	0	0	0	40	0	low	.	.	.	.	.	ENSG00000259673	ENSG00000231876	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
C6orf132	TRERF1	-/-	-/-	6:42106710	6:42262467	CDS	intron	deletion/read-through	0	0	0	1	2363	low	.	.	|C2H2-type_zinc_finger(33%)	.	.	ENSG00000188112	ENSG00000124496	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(11323),AL365184.2(29667)	IQCH	./.	+/.	1:240709752	15:67310425	intergenic	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	.	ENSG00000103599	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
Y_RNA(11323),AL365184.2(29667)	IQCH-AS1	./.	-/.	1:240709752	15:67310425	intergenic	intron	translocation	0	0	0	0	40	low	.	.	.	.	.	.	ENSG00000259673	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC008164.1(68612),AC008069.1(15641)	AC079943.2	./.	-/.	2:16838179	3:158007167	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000242536	.	.	upstream	downstream	mismatches(1)	.	.	.
Y_RNA(11323),AL365184.2(29667)	ADAMTS3	./.	-/.	1:240709752	4:72512747	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000156140	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC009158.1	GNL3L	+/.	+/.	16:26333540	X:54578337	intron	intron	translocation/5'-5'	0	0	0	0	42	low	.	.	.	.	.	ENSG00000231876	ENSG00000130119	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463103	15:45463201	intron	intron	duplication/ITD	0	0	0	0	28	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(12),low_entropy(2)	.	.	.
AP001823.1(3438),ELMOD1(750)	IGHVIII-38-1(839),IGHV4-39(2573)	./.	./.	11:107590341	14:106419138	intergenic	intergenic	translocation	0	0	0	1914	192	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
THEMIS	RHOXF1P1	-/.	-/.	6:127729140	X:119999806	intron	intron	translocation/5'-5'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000172673	ENSG00000234493	.	.	upstream	upstream	mismatches	.	.	.
THEMIS	DMD	-/.	-/.	6:127729140	X:31845434	intron	intron	translocation	0	0	0	3	3	low	.	.	.	.	.	ENSG00000172673	ENSG00000198947	.	.	upstream	downstream	low_entropy	.	.	.
NGB	DMD	-/.	-/.	14:77269724	X:31845434	intron	intron	translocation	0	0	0	87	3	low	.	.	.	.	.	ENSG00000165553	ENSG00000198947	.	.	upstream	downstream	mismatches	.	.	.
SALL2	ZNF442	-/.	-/.	14:21526050	19:12353540	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000165821	ENSG00000198342	.	.	downstream	upstream	mismatches(1)	.	.	.
NUP153	AC023906.5	-/.	-/.	6:17706647	15:52094810	5'UTR	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000124789	ENSG00000259712	.	.	downstream	upstream	mismatches(1)	.	.	.
PRB1	AC087883.2	-/.	-/.	12:11366762	12:60186047	intron	intron	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251655	ENSG00000287014	.	.	downstream	upstream	homopolymer(1)	.	.	.
ADH1B	JAK2	-/.	+/.	4:99309425	9:5092614	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000196616	ENSG00000096968	.	.	downstream	downstream	mismatches(1)	.	.	.
AC128716.1(424565),AC128685.1(39)	AL009177.1	./.	+/.	3:163026357	6:14487262	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000286277	.	.	upstream	upstream	mismatches(1)	.	.	.
GABRA2	GABRA2	-/-	-/-	4:46389803	4:46389862	5'UTR	5'UTR	duplication/ITD	0	0	0	1	1	low	.	.	|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)	.	.	ENSG00000151834	ENSG00000151834	.	.	upstream	downstream	low_entropy(1)	.	.	.
CLIC4	UBE2W	+/.	-/.	1:24839660	8:73820118	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000169504	ENSG00000104343	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
LSAMP	AC008035.1	-/.	+/.	3:116788511	12:46639334	intron	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	ENSG00000185565	ENSG00000272369	.	.	upstream	upstream	duplicates(5),mismatches(2)	.	.	.
NOS1	COL18A1	-/-	+/+	12:117265424	21:45478840	CDS	intron	translocation	0	0	0	0	5	low	.	.	Nitric_oxide_synthase__oxygenase_domain(88%),PDZ_domain(100%)|Collagen_triple_helix_repeat_(20_copies)(87%),Collagenase_NC10_and_Endostatin(100%)	.	.	ENSG00000089250	ENSG00000182871	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4502),AP001994.1(77179)	AF064860.1	./.	+/.	11:119744125	21:39679803	intergenic	intron	translocation	0	0	0	3002	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	RUNX1	+/.	-/.	21:8397831	21:34951104	intron	intron	duplication/3'-3'	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000159216	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	COL18A1	+/.	+/.	21:8214799	21:45478840	intron	intron	inversion/3'-3'	0	0	0	5263	5	low	.	.	.	.	.	ENSG00000278996	ENSG00000182871	.	.	upstream	upstream	mismatches(1)	.	.	.
TNIP3(17771),QRFPR(83405)	MSRB2	./.	+/.	4:121245237	10:23103183	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000148450	.	.	upstream	downstream	mismatches(1)	.	.	.
SUGCT(37661),LINC01450(66243)	FP671120.4	./.	+/.	7:40898424	21:8214797	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RPSAP40(64258),UST(34175)	FP671120.4	./.	+/.	6:148712855	21:8214797	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RFX6(109694),RPS29P13(6815)	HIVEP2	./.	-/.	6:117041855	6:142946392	intergenic	intron	inversion	0	0	0	0	63	low	.	.	.	.	.	.	ENSG00000010818	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4	RUNX1	+/.	-/.	21:8214797	21:34951104	intron	intron	duplication/3'-3'	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000159216	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	COL18A1	+/.	+/.	21:8442063	21:45478840	intron	intron	inversion/3'-3'	0	0	0	6	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000182871	.	.	upstream	upstream	mismatches(1)	.	.	.
AL133372.2	FP236383.3	-/.	+/.	14:30207313	21:8442062	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000248975	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RPSAP40(64258),UST(34175)	FP236383.3	./.	+/.	6:148712855	21:8442061	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SUGCT(37661),LINC01450(66243)	5_8S_rRNA(2093),FP236383.3(121617)	./.	./.	7:40898424	21:8259026	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
PLAGL1(20798),SF3B5(9487)	PSME2P2(74016),AL161421.1(129124)	./.	./.	6:144085397	13:48845843	intergenic	intergenic	translocation	0	0	0	52	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TMCC2(16210),NUAK2(221)	ZNF302(39542),AC020910.5(7359)	./.	./.	1:205301842	19:34725939	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ARHGEF26-AS1	AC122694.1(4465579),EMB(34643)	-/-	./-	3:154121333	5:50361549	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
RPSAP40(64259),UST(34174)	LRRC4B	./.	-/.	6:148712856	19:50548288	intergenic	intron	translocation	0	0	0	0	14	low	.	.	.	.	.	.	ENSG00000131409	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	FXNP1(22683),NRXN3(87412)	-/.	./.	10:104479915	14:78082961	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
LRRC4B	RUNX1	-/.	-/.	19:50548288	21:34951103	intron	intron	translocation/3'-3'	0	0	0	14	0	low	.	.	.	.	.	ENSG00000131409	ENSG00000159216	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	AP005436.1	+/.	-/.	10:104396370	11:88092395	intron	intron	translocation/3'-3'	0	0	0	558	1170	low	.	.	.	.	.	ENSG00000120051	ENSG00000255102	.	.	upstream	downstream	duplicates(1)	.	.	.
TMEM184A	RUNX1	-/.	-/.	7:1547185	21:34951103	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000164855	ENSG00000159216	.	.	downstream	downstream	mismatches(1)	.	.	.
HOMER2	AC092138.2(85726),AC022164.1(128439)	-/.	./.	15:82971584	16:65732673	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000103942	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104389.6	FP236383.3	-/.	+/.	11:5249917	21:8399949	intron	intron	translocation/3'-3'	0	0	0	0	205	low	.	.	.	.	.	ENSG00000284931	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AL133372.2	FP236383.3	-/.	+/.	14:30207313	21:8397832	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000248975	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL161910.1	DDB2	-/-	+/-	9:89603046	11:47233105	exon	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000285907	ENSG00000134574	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
RPSAP40(64258),UST(34175)	FP236383.3	./.	+/.	6:148712855	21:8397831	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CACNA1C	5_8S_rRNA(2692),FP236383.3(121018)	+/.	./.	12:2315052	21:8259625	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151067	.	.	.	upstream	upstream	mismatches(1)	.	.	.
MTF1(293),INPP5B(812),AL929472.2(812)	ANKLE1(1013),ABHD8(3472)	./.	./.	1:37859885	19:17288659	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL13AP2	ELF2	-/-	-/+	14:47201058	4:139103597	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000244053	ENSG00000109381	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL13AP6	ELF2	-/-	-/+	10:110937187	4:139103597	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234118	ENSG00000109381	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916412	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
AL353778.1(6586),NPL(47928)	LINC02123(10555),AC027343.1(3753)	./.	./.	1:182741365	5:7359226	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC024940.2	ELF2	-/-	-/+	12:31252553	4:139103597	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000243517	ENSG00000109381	.	.	upstream	upstream	mismatches(1)	.	.	.
CLIC4	SCNN1G	+/.	+/.	1:24839660	16:23199585	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169504	ENSG00000166828	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	LRRC4C	-/.	-/.	10:104479902	11:41021153	intron	intron	translocation	0	0	0	1761	632	low	.	.	.	.	.	ENSG00000225768	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
ANAPC4(33399),AC133963.2(20620)	FP236383.3	./.	+/.	4:25451897	21:8394756	intergenic	intron	translocation	0	0	0	4	182	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches	.	.	.
RPL13AP20	ELF2	+/+	-/+	12:12875545	4:139103597	exon	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000234498	ENSG00000109381	.	.	downstream	upstream	mismatches(1)	.	.	.
ADRA2C(58072),OR7E163P(62758)	PLEC	./.	-/.	4:3826598	8:143921036	intergenic	CDS	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000178209	.	.	downstream	downstream	mismatches(1)	.	.	.
CXCL12(8340),RPL9P21(19816)	PHKG2	./.	+/.	10:44394833	16:30749060	intergenic	intron	translocation	0	0	0	0	283	low	.	.	.	.	.	.	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
TACR1(190943),GAPDHP57(65531)	BRD3OS	./.	+/.	2:75390463	9:134030803	intergenic	3'UTR	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000235106	.	.	downstream	upstream	mismatches(1)	.	.	.
BRD3	TACR1(190943),GAPDHP57(65531)	-/-	./-	9:134030803	2:75390463	3'UTR	intergenic	translocation	0	0	0	0	2	low	.	.	Bromodomain(100%),Bromodomain_extra-terminal_-_transcription_regulation(100%)|	.	.	ENSG00000169925	.	.	.	upstream	downstream	mismatches(1)	.	.	.
INPP5D	RAD51B	+/.	+/.	2:233072043	14:68040917	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000168918	ENSG00000182185	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683461	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(1)	.	.	.
KANK1	TECTA	+/.	+/.	9:677772	11:121157716	intron	intron	translocation/5'-5'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000107104	ENSG00000109927	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL136979.1	TECTA	-/.	+/.	9:677772	11:121157716	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000227914	ENSG00000109927	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC004687.2	FP671120.4	-/.	+/.	17:58385559	21:8207432	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	ENSG00000278996	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
EDARADD	AC091705.1	+/.	-/.	1:236488670	7:25549346	intron	intron	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000186197	ENSG00000227386	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DENND1A	AC091705.1	-/-	-/-	9:123440096	7:25549346	exon	intron	translocation	0	0	0	0	6	low	.	.	DENN_(AEX-3)_domain(100%),dDENN_domain(100%),uDENN_domain(100%)|	.	.	ENSG00000119522	ENSG00000227386	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
LBR	CFAP221	-/-	+/+	1:225428021	2:119544463	5'UTR	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143815	ENSG00000163075	.	.	upstream	upstream	mismatches(1)	.	.	.
NTN1	NTN1	+/.	+/.	17:9166154	17:9166164	intron	intron	duplication/ITD	0	0	0	289	233	low	.	.	.	.	.	ENSG00000065320	ENSG00000065320	.	.	upstream	downstream	duplicates(24),low_entropy(3)	.	.	.
NGB	NGB	-/.	-/.	14:77269689	14:77269783	intron	intron	duplication/ITD	0	0	0	14	80	low	.	.	.	.	.	ENSG00000165553	ENSG00000165553	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
LINC01854(94047),PPIAP65(128402)	LARP4B	./.	-/.	2:129367895	10:921521	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000107929	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01854(94047),PPIAP65(128402)	AL450267.2	./.	+/.	2:129367895	9:36819085	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000287514	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092349	11:88092446	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
LARP4B	AL050309.1	-/.	+/.	10:921521	X:56010863	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000107929	ENSG00000227486	.	.	downstream	upstream	mismatches(1)	.	.	.
PALM	AL050309.1	+/.	+/.	19:709434	X:56010863	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000099864	ENSG00000227486	.	.	downstream	upstream	mismatches(1)	.	.	.
LEPR	NUP210(39389),AC027124.2(583)	+/.	./.	1:65498508	3:13459711	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000116678	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP003066.1	AP003066.1	+/.	+/.	11:96914326	11:96914337	intron	intron	duplication/ITD	0	0	0	16	2	low	.	.	.	.	.	ENSG00000254587	ENSG00000254587	.	.	upstream	downstream	low_entropy(2)	.	.	.
Z83818.2	Z83818.2	-/.	-/.	X:87716930	X:87716945	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000282914	ENSG00000282914	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
AC026202.2	FP236383.3	-/.	+/.	3:5167935	21:8437518	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000233912	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PDE4DIP	PDE4DIP	+/.	+/.	1:148810794	1:148810809	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000178104	ENSG00000178104	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
PCAT1	PCAT1	+/.	+/.	8:126750632	8:126750645	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000253438	ENSG00000253438	.	.	upstream	downstream	duplicates(5),low_entropy(6)	.	.	.
RNU6-248P(2089),RNU6-261P(351959)	FP236383.3	./.	+/.	6:76095029	21:8441655	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AL591463.1(101809),LRRIQ3(8866)	FP236383.3	./.	+/.	1:74017149	21:8441654	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
URI1	FP236383.3	+/.	+/.	19:30010965	21:8397818	intron	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000105176	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ARAP2	DLG2	-/.	-/.	4:36080800	11:85484189	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000047365	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
GRM1	FP671120.4	+/.	+/.	6:146255322	21:8214397	intron	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	ENSG00000152822	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
Metazoa_SRP(5472),Y_RNA(20729)	FP671120.4	./.	+/.	10:21460987	21:8214397	intergenic	intron	translocation	0	0	0	0	540	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4(3815),FP671120.10(3893)	FP236383.3	./.	+/.	21:8231461	21:8400427	intergenic	intron	deletion/read-through	0	0	0	38	4	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
HTR1E	FP671120.4	+/.	+/.	6:86956265	21:8214396	intron	intron	translocation/3'-3'	0	0	0	0	540	low	.	.	.	.	.	ENSG00000168830	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
COMMD4P2	DLGAP2	-/-	+/-	15:74097171	8:1553476	exon	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000214702	ENSG00000198010	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916405	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
U3(104497),GPC1(41723)	MRPS36P5(24794),LINC02461(76135)	./.	./.	2:240393940	12:43079180	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL7P45(385975),AL138954.1(209772)	FP236383.3	./.	+/.	13:105201044	21:8397435	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(12667),LYPLA1P3(25304)	CASC6	./.	-/.	6:71139772	6:91599768	intergenic	intron	deletion	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000224944	.	.	downstream	upstream	mismatches(1)	.	.	.
GRM1	FP236383.3	+/.	+/.	6:146255322	21:8397435	intron	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000152822	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01572	LINC01572	-/.	-/.	16:72284983	16:72285041	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000261008	ENSG00000261008	.	.	upstream	downstream	low_entropy(1)	.	.	.
RNU6-248P(2089),RNU6-261P(351959)	DLG2	./.	-/.	6:76095029	11:85484189	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	mismatches(1)	.	.	.
PGBD2	C8orf37-AS1	+/.	+/.	1:248906245	8:95303970	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185220	ENSG00000253773	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396501	8:22396599	intron	intron	duplication/ITD	0	0	0	178	229	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	duplicates(19),low_entropy(6)	.	.	.
AL591463.1(101809),LRRIQ3(8866)	FP236383.3	./.	+/.	1:74017149	21:8397434	intergenic	intron	translocation	0	0	0	0	543	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NUP98	NUP98	-/.	-/.	11:3702314	11:3702323	intron	intron	duplication/ITD	0	0	0	179	159	low	.	.	.	.	.	ENSG00000110713	ENSG00000110713	.	.	upstream	downstream	duplicates(3),low_entropy(2),merge_adjacent	.	.	.
RPL7P45(385975),AL138954.1(209772)	5_8S_rRNA(1687),FP236383.3(122023)	./.	./.	13:105201044	21:8258620	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ARAP2	5_8S_rRNA(1687),FP236383.3(122023)	-/.	./.	4:36080800	21:8258620	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000047365	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC025580.2	MACROD2	+/.	+/.	15:45462583	20:15209116	intron	intron	translocation/5'-5'	0	0	0	23	68	low	.	.	.	.	.	ENSG00000259354	ENSG00000172264	.	.	downstream	downstream	duplicates(8),mismatches(1)	.	.	.
AC083967.1(22202),LINC01592(5174)	5_8S_rRNA(1687),FP236383.3(122023)	./.	./.	8:68874965	21:8258620	intergenic	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GRM1	DLG2	+/.	-/.	6:146255322	11:85484189	intron	intron	translocation/5'-5'	0	0	0	0	279	low	.	.	.	.	.	ENSG00000152822	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
AC083967.1(22202),LINC01592(5174)	DLG2	./.	-/.	8:68874965	11:85484189	intergenic	intron	translocation	0	0	0	0	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117364	10:113117437	intron	intron	duplication/ITD	0	0	0	307	307	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	duplicates(2)	.	.	.
AC109492.1	ARHGAP28	+/.	+/.	5:86980215	18:6861597	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000249061	ENSG00000088756	.	.	downstream	downstream	mismatches(1)	.	.	.
NKAIN2	AL023882.1	+/.	+/.	6:123975928	16:1045659	intron	intergenic	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188580	ENSG00000287855	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPL7P45(385975),AL138954.1(209772)	FP236383.3	./.	+/.	13:105201044	21:8441655	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262515	6:42262524	intron	intron	duplication/ITD	0	0	0	2239	2363	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	11:82065805	11:82143176	intron	intron	duplication	0	0	0	0	1095	low	.	.	.	.	.	ENSG00000245832	ENSG00000245832	.	.	upstream	downstream	same_gene	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479811	10:104479908	intron	intron	duplication/ITD	0	0	0	2200	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
FCMR	SMYD2	-/.	+/.	1:206921802	1:214335680	intron	intron	duplication/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162894	ENSG00000143499	.	.	upstream	downstream	mismatches(1)	.	.	.
BICDL2	KRT8P24(15108),SECISBP2L(7)	-/-	./-	16:3031443	15:48988469	CDS	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000162069	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR6724-2(404),FP671120.3(60)	FP236383.3	./.	+/.	21:8250000	21:8397816	intergenic	intron	deletion/read-through	0	0	0	0	6042	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
PDIA5	PCNT	+/.	+/.	3:123163003	21:46422072	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000065485	ENSG00000160299	.	.	upstream	upstream	mismatches(1)	.	.	.
AL627316.1	SNX16	-/.	-/.	1:90392802	8:81842457	intron	intron	translocation/5'-5'	0	0	0	312	67	low	.	.	.	.	.	ENSG00000287372	ENSG00000104497	.	.	upstream	upstream	mismatches	.	.	.
MUC5B	AP001972.3	+/.	-/.	11:1236372	11:75223658	intron	intron	deletion/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000117983	ENSG00000255136	.	.	downstream	upstream	mismatches(1)	.	.	.
AC113414.1	PCNT	-/.	+/.	5:162730608	21:46422072	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000254186	ENSG00000160299	.	.	downstream	upstream	mismatches(1)	.	.	.
ANXA11	AL390763.1(438379),LINC02667(154217)	-/.	./.	10:80168260	10:128758593	intron	intergenic	inversion	0	0	0	0	3	low	.	.	.	.	.	ENSG00000122359	.	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	AC106782.4(5727),CD2BP2(1710)	./.	./.	5:23949377	16:30349063	intergenic	intergenic	translocation	0	0	0	12	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
MIR3681HG	FGF14-IT1	+/.	-/.	2:11878015	13:102394501	intron	exon	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000224184	ENSG00000243319	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079943.2	CR392039.1(1016),CR392039.3(8050)	-/.	./.	3:158007165	21:8988446	intron	intergenic	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000242536	.	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
MIR3681HG	CXorf58	+/.	+/.	2:11878014	X:23908174	intron	5'UTR	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000224184	ENSG00000165182	.	.	downstream	upstream	mismatches(1)	.	.	.
PDIA5	MUC5B	+/.	+/.	3:123163003	11:1236372	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000065485	ENSG00000117983	.	.	upstream	downstream	mismatches(1)	.	.	.
HBB	PIGS	-/.	-/.	11:5225537	17:28571018	3'UTR	CDS	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000087111	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00355	GNL3L	-/.	+/.	13:63940253	X:54578320	intron	intron	translocation/3'-3'	0	0	0	0	42	low	.	.	.	.	.	ENSG00000227674	ENSG00000130119	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SUSD1(46),PTBP3(42373)	SDK2	./.	-/.	9:112175343	17:73390529	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000069188	.	.	downstream	downstream	mismatches(1)	.	.	.
CDC27P1(4281),AC097532.1(18472)	CT867976.1(150829),AC138776.1(197051)	./.	./.	2:132267323	22:11630472	intergenic	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091893.1(11701),AC106821.2(10671)	MUC5B	./.	+/.	5:24761473	11:1236372	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000117983	.	.	upstream	downstream	mismatches(1)	.	.	.
MIGA1(775),NEXN-AS1(1034)	MUC5B	./.	+/.	1:77880314	11:1236372	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000117983	.	.	downstream	downstream	mismatches(1)	.	.	.
MIR3148(37078),MAP2K1P1(33287)	ZNF592(4827),ALPK3(6084)	./.	./.	8:29994426	15:84811272	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LARS2-AS1	MUC5B	-/.	+/.	3:45493462	11:1236372	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000232455	ENSG00000117983	.	.	downstream	downstream	mismatches(1)	.	.	.
AL390334.1(278),BNIP3P1(418826)	AC007218.1(69463),GRIN2A(7098)	./.	./.	14:27845564	16:9746306	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MTRR(12527),AC025174.1(5740)	MGMT	./.	+/.	5:7918552	10:129481948	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000170430	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AP001972.3	PCNT	-/.	+/.	11:75223658	21:46422072	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255136	ENSG00000160299	.	.	upstream	upstream	mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	CASP7	./.	+/.	8:37342743	10:113707320	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165806	.	.	upstream	upstream	mismatches(1)	.	.	.
MAPK6P1(19019),AC103778.1(153378)	TAMALIN(981),NR4A1(5962)	./.	./.	8:53559319	12:52016870	intergenic	intergenic	translocation	0	0	0	1	2	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP1LC3BP1(11861),SLC24A2(31067)	CDH8	./.	-/.	9:19476385	16:61831043	intergenic	intron	translocation	0	0	0	4	57	low	.	.	.	.	.	.	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
DBNDD1	CERS1	-/.	-/.	16:90019748	19:18891453	CDS	intron	translocation/3'-3'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000003249	ENSG00000223802	.	.	downstream	downstream	mismatches(1)	.	.	.
ATF6	FP236383.3	+/.	+/.	1:161819246	21:8398431	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000118217	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
AC092384.3	DTNBP1(49300),ARPC3P5(222424)	-/-	./+	16:88937824	6:15712358	exon	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000261226	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP001823.1(3442),ELMOD1(746)	GPC3	./.	-/.	11:107590345	X:133661640	intergenic	intron	translocation	0	0	0	1914	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
PRKCE(28639),RPL36AP14(40231)	DTNBP1(49300),ARPC3P5(222424)	./.	./.	2:46216629	6:15712358	intergenic	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479809	10:104479827	intron	intron	duplication/ITD	0	0	0	2200	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RTN4RL1	RTN4RL1	-/.	-/.	17:2005723	17:2005765	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000185924	ENSG00000185924	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC01377(90356),LINC01019(85421)	SYNE1	./.	-/.	5:3271843	6:152636709	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000131018	.	.	upstream	downstream	mismatches(1)	.	.	.
DHFR	FP236383.3	-/.	+/.	5:80650918	21:8441654	intron	intron	translocation/3'-3'	0	0	0	0	546	low	.	.	.	.	.	ENSG00000228716	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
GPR153	LINC01377(90356),LINC01019(85421)	-/-	./+	1:6249484	5:3271843	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(100%)|	.	.	ENSG00000158292	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01377(90356),LINC01019(85421)	RAB12	./.	+/.	5:3271843	18:8609536	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000206418	.	.	upstream	upstream	mismatches(1)	.	.	.
AL449106.1	AC011474.1	-/-	-/-	1:178725055	19:29438842	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	ENSG00000264515	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
BICC1	GSE1	+/.	+/.	10:58688003	16:85260119	intron	intron	translocation	0	0	0	87	19	low	.	.	.	.	.	ENSG00000122870	ENSG00000131149	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
HBB	EMID1	-/.	+/.	11:5225537	22:29251496	3'UTR	intron	translocation/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000186998	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01377(90374),LINC01019(85403)	FP326651.1	./.	+/.	5:3271861	9:65387296	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000287329	.	.	downstream	downstream	mismatches(1)	.	.	.
GTF2IRD1P1	5_8S_rRNA(2092),FP236383.3(121618)	-/.	./.	7:66824572	21:8259025	intron	intergenic	translocation	0	0	0	8	6	low	.	.	.	.	.	ENSG00000230583	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	CT867976.1(150830),AC138776.1(197050)	+/.	./.	21:8394738	22:11630473	intron	intergenic	translocation	0	0	0	28	8	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC006305.1(144739),TXNL1(261208)	MT-RNR2	./.	+/.	18:56336001	MT:2230	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
NTSR1	MT-RNR2	+/.	+/.	20:62721971	MT:2230	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000101188	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
TRERF1	AP003390.1(4501),AP001994.1(77180)	-/.	./.	6:42262463	11:119744124	intron	intergenic	translocation	0	0	0	2363	3002	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	low_entropy	.	.	.
FJX1(30126),AL138812.1(5703)	KRT8P27(3758),GRPEL2P2(69547)	./.	./.	11:35650991	X:64628331	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SL705P(24094),PHLPP1(40846)	MT-RNR2	./.	+/.	18:62674695	MT:2230	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
COL4A5	MT-RNR2	+/.	+/.	X:108475044	MT:2230	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000188153	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC01675(30205),FMO8P(45666)	MT-RNR2	./.	+/.	1:166520512	MT:2230	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
SNX29	MT-RNR2	+/.	+/.	16:12448547	MT:2231	intron	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	ENSG00000048471	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FBXW7	CSGALNACT1	-/-	-/+	4:152411373	8:19656696	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109670	ENSG00000147408	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.3(3890),FP671120.7(553)	FP236383.3	./.	+/.	21:8254039	21:8442059	intergenic	intron	inversion	0	0	0	57	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105252.1(213810),AC079380.1(82228)	MT-RNR2	./.	+/.	4:133789018	MT:2232	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
GPR88	HMGN2P19(11478),TAF5L(10847)	+/.	./.	1:100539601	1:229582274	CDS	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000181656	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
TNFRSF8(4018),MIR7846(18718)	TMEM38B(20560),SLC25A6P5(52521)	./.	./.	1:12148225	9:105797189	intergenic	intergenic	translocation	0	0	0	0	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
TNFRSF8(4019),MIR7846(18717)	OR2K2	./.	-/.	1:12148226	9:111329304	intergenic	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	.	ENSG00000171133	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
AC009035.1(259591),C16orf82(77990)	FP236383.3	./.	+/.	16:26988717	21:8394736	intergenic	intron	translocation	0	0	0	14	154	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
OR2K2	ZNF335	-/.	-/.	9:111329302	20:45971849	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000171133	ENSG00000198026	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
OR2K2	ENOX1	-/.	-/.	9:111329302	13:43767956	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000171133	ENSG00000120658	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SPCS2(8254),NEU3(992)	MT-RNR2	./.	+/.	11:74987287	MT:2612	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	duplicates(2),uninteresting_contigs(2)	.	.	.
ATP5MFP5(22992),PLEKHG6(17019)	AP000255.1(48419),TPT1P1(55515)	./.	./.	12:6293417	21:31784826	intergenic	intergenic	translocation	0	0	0	0	89	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(22)	.	.	.
IL20RB(263261),RNA5SP142(243788)	AP001823.1(3436),ELMOD1(752)	./.	./.	3:137274346	11:107590339	intergenic	intergenic	translocation	0	0	0	71	1909	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches	.	.	.
MEGF6	U3(104494),GPC1(41726)	-/.	./.	1:3565378	2:240393937	intron	intergenic	translocation	0	0	0	0	357	low	.	.	.	.	.	ENSG00000162591	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092969.1	KRT18P55	-/.	-/.	3:135298917	17:28307146	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000240086	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
CPNE4	HLA-DRB5	-/.	-/.	3:131574562	6:32519404	intron	CDS	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000196353	ENSG00000198502	.	.	downstream	downstream	mismatches(1)	.	.	.
C11orf53	LINC00459(14754),AL356102.1(54058)	+/.	./.	11:111249043	13:62343587	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150750	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	UPRT	+/.	+/.	21:8397835	X:75223386	intron	intron	translocation	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000094841	.	.	upstream	downstream	duplicates(1),homopolymer(1)	.	.	.
KRT8P18(38620),RNU6-243P(1071)	WIPI2(6935),SLC29A4(33594)	./.	./.	3:35255769	7:5240775	intergenic	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CMIP	FP671120.7(393),5_8S_rRNA(874)	+/.	./.	16:81678636	21:8255907	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000153815	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
RNU6-54P(53255),AL445264.1(51442)	KRT18P55	./.	-/.	13:70512825	17:28307146	intergenic	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000265480	.	.	upstream	downstream	mismatches(1)	.	.	.
TMC4	AC018653.3	-/-	-/+	19:54168417	12:7130724	exon	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000167608	ENSG00000256967	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MICALL2	FP671120.4	-/-	+/+	7:1444968	21:8214794	CDS	intron	translocation	0	0	0	0	5263	low	.	.	Calponin_homology_(CH)_domain(100%),LIM_domain(100%)|	.	.	ENSG00000164877	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC012560.1(8028),AC016820.1(12925)	KRT18P55	./.	-/.	10:78683137	17:28307146	intergenic	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
DHFR	PCMTD1	-/.	-/.	5:80650902	8:51864075	intron	intron	translocation/5'-5'	0	0	0	30	4	low	.	.	.	.	.	ENSG00000228716	ENSG00000168300	.	.	upstream	upstream	mismatches	.	.	.
KRT18P55	STARD8	-/.	+/.	17:28307146	X:68676869	exon	intron	translocation/3'-3'	0	0	0	24	0	low	.	.	.	.	.	ENSG00000265480	ENSG00000130052	.	.	downstream	upstream	mismatches(1)	.	.	.
BTF3P15(35676),AL390123.1(91148)	FP236383.3	./.	+/.	10:109570666	21:8441948	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
KIAA2012-AS1	RAD18	-/.	-/.	2:202083777	3:8909455	intron	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000222035	ENSG00000070950	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT18P55	ZNF736P10Y(46115),AC016991.1(51349)	-/.	./.	17:28307146	Y:8466015	exon	intergenic	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000265480	.	.	.	downstream	upstream	mismatches(1)	.	.	.
KRT18P55	APOC1P1(4463),APOC4(6388)	-/.	./.	17:28307146	19:44935849	exon	intergenic	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000265480	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MGAT4C	KRT18P55	-/.	-/.	12:86555092	17:28307146	intron	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000182050	ENSG00000265480	.	.	upstream	downstream	mismatches(1)	.	.	.
AC007497.2(15017),RPGRIP1L(37447)	KRT18P55	./.	-/.	16:53560706	17:28307146	intergenic	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	.	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
AL359091.1(8662),CERCAM(9579)	LGALS3BP	./+	-/-	9:128402172	17:78973000	intergenic	CDS	translocation	0	0	0	0	4	low	.	.	|BTB_And_C-terminal_Kelch(100%)	.	.	.	ENSG00000108679	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
IL20RB(263256),RNA5SP142(243793)	TRERF1	./.	-/.	3:137274341	6:42262568	intergenic	intron	translocation	0	0	0	71	2136	low	.	.	.	.	.	.	ENSG00000124496	.	.	upstream	downstream	mismatches	.	.	.
AL355612.1	KRT18P55	+/.	-/.	6:76809305	17:28307146	intron	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000271945	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001823.1(3436),ELMOD1(752)	GPC3	./.	-/.	11:107590339	X:133661640	intergenic	intron	translocation	0	0	0	1909	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	upstream	downstream	low_entropy	.	.	.
CTB-178M22.2	FP236383.3	-/.	+/.	5:168236204	21:8393308	intron	intron	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000253978	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RABGAP1L	KRT18P55	+/.	-/.	1:174944495	17:28307146	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000152061	ENSG00000265480	.	.	upstream	downstream	mismatches(1)	.	.	.
RHOQ	AC024588.1	+/.	+/.	2:46542783	5:16637120	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000119729	ENSG00000246214	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
RABGAP1L-AS1	KRT18P55	-/.	-/.	1:174944495	17:28307146	intron	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000229531	ENSG00000265480	.	.	upstream	downstream	mismatches(1)	.	.	.
TACR1(190943),GAPDHP57(65531)	SMIM35	./.	-/.	2:75390463	11:118038215	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000255274	.	.	downstream	downstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	DLG2	./.	-/.	3:103984260	11:85484194	intergenic	intron	translocation	0	0	0	83	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02671	KRT18P55	-/.	-/.	10:64988917	17:28307146	intron	exon	translocation/3'-3'	0	0	0	0	24	low	.	.	.	.	.	ENSG00000224714	ENSG00000265480	.	.	downstream	downstream	mismatches(1)	.	.	.
DNAJB6(47802),AC006372.3(990)	AC024475.3(30748),LINC02710(5296)	./.	./.	7:157465241	11:46207854	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL391832.3(16783),LINC01348(67892)	IFT43(29893),AC016526.4(17229)	./.	./.	1:234997587	14:76114478	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KRT18P55	AL035425.1(4066),RNU6-309P(83475)	-/.	./.	17:28307146	X:108743289	exon	intergenic	translocation	0	0	0	24	0	low	.	.	.	.	.	ENSG00000265480	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ENPP5	FP236383.3	-/.	+/.	6:46166260	21:8444310	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000112796	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC079943.2	LINC00841	-/.	+/.	3:158007167	10:43973598	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000242536	ENSG00000233395	.	.	downstream	upstream	mismatches(1)	.	.	.
AC008164.1(68612),AC008069.1(15641)	CES5A(24342),AC040168.1(3636)	./.	./.	2:16838179	16:55980373	intergenic	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AL163974.1(28073),LINC00523(39851)	AL163974.1(28090),LINC00523(39834)	./.	./.	14:100617399	14:100617416	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
GAPDHP26(52000),PLPPR1(45)	WIZ	./.	-/.	9:101028682	19:15432944	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000011451	.	.	downstream	downstream	mismatches(1)	.	.	.
ENPP6	GTF2IP5	-/.	+/.	4:184122405	7:65796424	intron	intron	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	ENSG00000224316	.	.	upstream	upstream	mismatches(2)	.	.	.
AC091182.1(10752),AC091182.2(62696)	SMCHD1	./.	+/.	8:37342743	18:2656081	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101596	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC9A3R2	FP236383.3	+/.	+/.	16:2028847	21:8442065	intron	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000065054	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
AC109309.1	DDB2	+/.	+/.	11:3231584	11:47233105	intron	intron	inversion/3'-3'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000224513	ENSG00000134574	.	.	downstream	downstream	duplicates(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462150	intron	intron	translocation/5'-5'	0	0	0	154	28	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	mismatches(2)	.	.	.
ENTPD1-AS1(16753),RNU6-271P(5744)	FP236383.3	./.	+/.	10:96107003	21:8444814	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ENPP6	AL500522.1	-/.	+/.	4:184122405	X:143818053	intron	intron	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	ENSG00000225970	.	.	upstream	upstream	mismatches(2)	.	.	.
AP003390.1(4395),AP001994.1(77286)	AP003390.1(4404),AP001994.1(77277)	./.	./.	11:119744018	11:119744027	intergenic	intergenic	duplication/ITD	0	0	0	3458	1583	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(3)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8209831	21:8214790	intron	intron	inversion/3'-3'	0	0	0	48	5263	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
LINC01320	LAMA3	+/.	+/.	2:33767495	18:23756906	intron	intron	translocation	0	0	0	72	0	low	.	.	.	.	.	ENSG00000228262	ENSG00000053747	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785685	2:101785784	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	low_entropy(3)	.	.	.
ENPP6	ELOCP27(51417),AP005203.1(264179)	-/.	./.	4:184122405	18:4510875	intron	intergenic	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	.	.	.	upstream	upstream	mismatches(2)	.	.	.
ENPP6	ELOCP27(51428),AP005203.1(264168)	-/.	./.	4:184122405	18:4510886	intron	intergenic	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	.	.	.	upstream	upstream	mismatches(2)	.	.	.
ENPP6	ELOCP27(51330),AP005203.1(264266)	-/.	./.	4:184122405	18:4510788	intron	intergenic	translocation	0	0	0	154	0	low	.	.	.	.	.	ENSG00000164303	.	.	.	upstream	upstream	mismatches(2)	.	.	.
ANKRD34C-AS1	AC109136.1(34094),AC109462.1(176557)	-/.	./.	15:79162042	16:55083412	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000259234	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ENPP6	AC025580.2	-/.	+/.	4:184122405	15:45462579	intron	intron	translocation/5'-5'	0	0	0	154	3	low	.	.	.	.	.	ENSG00000164303	ENSG00000259354	.	.	upstream	downstream	mismatches(2)	.	.	.
EDIL3	EDIL3	-/.	-/.	5:84371451	5:84371464	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000164176	ENSG00000164176	.	.	upstream	downstream	low_entropy(1)	.	.	.
RUFY4(18122),CXCR2(16586)	HNRNPA3P8(184084),AC108740.1(40763)	./.	./.	2:218108703	3:80401318	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
RUFY4(18122),CXCR2(16586)	TEDC1	./.	+/.	2:218108703	14:105493961	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000185347	.	.	downstream	downstream	duplicates(2),homopolymer(1)	.	.	.
SRGAP2B	AC009623.1(62349),AC009623.2(25544)	-/.	./.	1:144954158	8:25751135	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000196369	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TRERF1	AP001823.1(3431),ELMOD1(757)	-/.	./.	6:42262463	11:107590334	intron	intergenic	translocation	0	0	0	2363	1909	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	upstream	low_entropy	.	.	.
MTNR1A(19231),FAT1(12996)	MSR1	./.	-/.	4:186574798	8:16167047	intergenic	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	.	ENSG00000038945	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093746.1(52366),LINC02616(36067)	STEAP2-AS1	./.	-/.	4:36965705	7:89935172	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000227646	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262595	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262591	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
ATP11A	FP671120.4	+/.	+/.	13:112710652	21:8214787	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000068650	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
KYNU(33029),ARHGAP15(2500)	MAP2K4	./.	+/.	2:143088862	17:12046077	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000065559	.	.	downstream	upstream	mismatches(1)	.	.	.
ST3GAL5(13880),AC012511.2(15456)	FP236383.3	./.	+/.	2:85919079	21:8442059	intergenic	intron	translocation	0	0	0	10	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262585	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262581	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1376650	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
FOXI3	RUFY4(18122),CXCR2(16586)	-/.	./.	2:88452449	2:218108703	CDS	intergenic	inversion	0	0	0	2	193	low	.	.	.	.	.	ENSG00000214336	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262579	intron	intron	duplication	0	0	0	2363	2136	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
MYOM3	SHANK1	-/.	-/.	1:24060637	19:50695114	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000142661	ENSG00000161681	.	.	downstream	downstream	mismatches(1)	.	.	.
DNM3	FP236383.3	+/.	+/.	1:172034252	21:8393309	intron	intron	translocation/3'-3'	0	0	0	0	20	low	.	.	.	.	.	ENSG00000197959	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TRERF1	AP001823.1(3433),ELMOD1(755)	-/.	./.	6:42262463	11:107590336	intron	intergenic	translocation	0	0	0	2363	1909	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	upstream	low_entropy	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262577	intron	intron	duplication	0	0	0	2363	2136	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
AC104109.4	DACT2(25892),AL138918.1(29028)	-/.	./.	5:134225645	6:168345669	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273345	.	.	.	upstream	upstream	mismatches(1)	.	.	.
FXNP1(22674),NRXN3(87421)	FXNP1(22683),NRXN3(87412)	./.	./.	14:78082952	14:78082961	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262571	intron	intron	duplication	0	0	0	2363	2136	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262569	intron	intron	duplication	0	0	0	2363	2136	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	small_insert_size	.	.	.
MLN	FOXN3	-/.	-/.	6:33798709	14:89313738	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000096395	ENSG00000053254	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785692	6:42262463	intron	intron	translocation	0	0	0	496	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785686	6:42262463	intron	intron	translocation	0	0	0	496	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785684	6:42262463	intron	intron	translocation	0	0	0	496	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
TRERF1	AP001823.1(3435),ELMOD1(753)	-/.	./.	6:42262463	11:107590338	intron	intergenic	translocation	0	0	0	2363	1909	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	upstream	low_entropy	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785682	6:42262463	intron	intron	translocation	0	0	0	496	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
FBLN2	AC091182.1(10752),AC091182.2(62696)	+/.	./.	3:13556327	8:37342743	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163520	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL34P29(4462),AC007603.3(15171)	ZNF433-AS1	./.	+/.	16:49939814	19:12012007	intergenic	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	.	ENSG00000219665	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785680	6:42262463	intron	intron	translocation	0	0	0	466	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
MAP4K4	TRERF1	+/.	-/.	2:101785694	6:42262463	intron	intron	translocation	0	0	0	496	2363	low	.	.	.	.	.	ENSG00000071054	ENSG00000124496	.	.	upstream	upstream	low_entropy	.	.	.
TRERF1	AP003390.1(4497),AP001994.1(77184)	-/.	./.	6:42262463	11:119744120	intron	intergenic	translocation	0	0	0	2363	3583	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC02629(156849),PARD3(34907)	AL355821.1(27900),PEX12P1(126694)	./.	./.	10:34074653	13:89865137	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262599	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
ABCC4	ABCC4	-/.	-/.	13:95029214	13:95029227	intron	intron	duplication/ITD	0	0	0	10	8	low	.	.	.	.	.	ENSG00000125257	ENSG00000125257	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FP671120.4	UBE2L3	+/.	+/.	21:8217546	22:21613411	intron	intron	translocation	0	0	0	25	2	low	.	.	.	.	.	ENSG00000278996	ENSG00000185651	.	.	upstream	downstream	mismatches(1)	.	.	.
AC004052.1	AC010996.1(82278),AC025039.1(148971)	+/.	./.	4:104399280	10:56446992	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000251170	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
PROM1(9729),AC108063.2(20126)	PROM1(9792),AC108063.2(20063)	./.	./.	4:16094107	4:16094170	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LIX1-AS1	AC062004.1(171002),AC084706.1(439809)	+/.	./.	5:97134548	8:77708292	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251513	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LIX1	AC062004.1(171002),AC084706.1(439809)	-/.	./.	5:97134548	8:77708292	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000145721	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ILRUN	AL591468.1(1337),LINC02528(38166)	-/.	./.	6:34634770	6:137904913	intron	intergenic	duplication	0	0	0	6	6	low	.	.	.	.	.	ENSG00000196821	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
EXT1(896),SAMD12(76733)	EXT1(924),SAMD12(76705)	./.	./.	8:118112722	8:118112750	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(15),low_entropy(1)	.	.	.
AC077690.1(10581),LMCD1-AS1(150200)	FP236383.3	./.	+/.	3:7801063	21:8442059	intergenic	intron	translocation	0	0	0	5	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PTPRJ	RASGRF1	+/.	-/.	11:48006284	15:79031714	intron	intron	translocation/3'-3'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000149177	ENSG00000058335	.	.	upstream	downstream	mismatches	.	.	.
LINC02669	LINC02669	-/.	-/.	10:3470843	10:3470940	intron	intron	duplication/ITD	0	0	0	17	15	low	.	.	.	.	.	ENSG00000233321	ENSG00000233321	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RPS24P8(33048),TMEM158(31243)	TUBBP11(353367),RAP1BP2(78760)	./.	./.	3:45193223	3:103984279	intergenic	intergenic	duplication	0	0	0	0	81	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	LINC02620	-/.	-/.	6:42262463	10:104479915	intron	intron	translocation	0	0	0	2363	1761	low	.	.	.	.	.	ENSG00000124496	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
MEIKIN	MEIKIN	-/.	-/.	5:131885339	5:131885358	intron	intron	duplication/ITD	0	0	0	60	10	low	.	.	.	.	.	ENSG00000239642	ENSG00000239642	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	ST18(24417),ALKAL1(48661)	./.	./.	2:53114408	8:52485376	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC034228.3	AC034228.3	-/.	-/.	5:131885339	5:131885358	intron	intron	duplication/ITD	0	0	0	60	10	low	.	.	.	.	.	ENSG00000281938	ENSG00000281938	.	.	upstream	downstream	low_entropy(1)	.	.	.
SLC35F3	EPHA3	+/.	+/.	1:234110599	3:89393759	intron	intron	translocation/3'-3'	0	0	0	3	6	low	.	.	.	.	.	ENSG00000183780	ENSG00000044524	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNU4ATAC9P(36240),RNU6ATAC5P(25205)	SPTB	./.	-/.	4:73001543	14:64825795	intergenic	intron	translocation	0	0	0	3	3	low	.	.	.	.	.	.	ENSG00000070182	.	.	downstream	downstream	mismatches(1)	.	.	.
MAD1L1	PHACTR3	-/.	+/.	7:1874442	20:59836034	intron	5'UTR	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000002822	ENSG00000087495	.	.	downstream	upstream	mismatches(1)	.	.	.
AC112198.2(3914),ESM1(16107)	5_8S_rRNA(1980),FP236383.3(121730)	./.	./.	5:54961760	21:8258913	intergenic	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM110B	AC021506.1	+/.	-/.	8:58076460	18:75862751	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000169122	ENSG00000266460	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021151	11:41021207	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(1)	.	.	.
NFE2L1	RNU4ATAC9P(36240),RNU6ATAC5P(25205)	+/+	./-	17:48059602	4:73001543	CDS	intergenic	translocation	0	0	0	3	3	low	.	.	bZIP_Maf_transcription_factor(100%)|	.	.	ENSG00000082641	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022973.5	LINC00273(638),RNA5-8SP2(2285)	+/.	./.	8:129834827	16:34160674	intron	intergenic	translocation	0	0	0	0	20	low	.	.	.	.	.	ENSG00000254317	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LRRFIP1	LRRFIP1	+/.	+/.	2:237784949	2:237784963	intron	intron	duplication/ITD	0	0	0	67	67	low	.	.	.	.	.	ENSG00000124831	ENSG00000124831	.	.	upstream	downstream	duplicates(65),low_entropy(2)	.	.	.
AP001823.1(3436),ELMOD1(752)	AP001823.1(3535),ELMOD1(653)	./.	./.	11:107590339	11:107590438	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC079949.3	FP236383.3	+/.	+/.	12:127165982	21:8397825	intron	intron	translocation	0	0	0	11	1126	low	.	.	.	.	.	ENSG00000286016	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
RPL7P59(171588),AC004911.1(56985)	TCF12	./.	+/.	7:145212529	15:57216569	intergenic	intron	translocation	0	0	0	0	26	low	.	.	.	.	.	.	ENSG00000140262	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8442055	21:8446136	intron	intron	inversion/3'-3'	0	0	0	5962	11	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
PRKAR1B	LINC00354(84832),AL138691.1(65982)	-/.	./.	7:651313	13:111986096	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000188191	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8218866	21:8442055	intron	intron	inversion/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL21P18(19872),RNA5SP362(8635)	RPL21P18(19964),RNA5SP362(8543)	./.	./.	12:66057586	12:66057678	intergenic	intergenic	duplication/ITD	0	0	0	21	21	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NFKBIB	PTPRD	+/+	-/-	19:38907957	9:9728075	3'UTR	intron	translocation	0	0	0	0	0	low	.	.	Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein-tyrosine_phosphatase(100%)	.	.	ENSG00000104825	ENSG00000153707	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397825	21:8401905	intron	intron	inversion/3'-3'	0	0	0	1126	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
HIVEP2	RNF128	-/.	+/.	6:142946392	X:106773946	intron	intron	translocation	0	0	0	63	0	low	.	.	.	.	.	ENSG00000010818	ENSG00000133135	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CAST	FP236383.3	+/.	+/.	5:96664239	21:8442051	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000153113	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397825	21:8446136	intron	intron	inversion/3'-3'	0	0	0	1126	11	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
KIAA0825	XRCC6P2(65223),MAMLD1(63303)	-/.	./.	5:94527987	X:150298119	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185261	.	.	.	upstream	downstream	mismatches(1)	.	.	.
GGPS1	ERC2	+/.	-/.	1:235327619	3:55815738	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000187672	.	.	upstream	downstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262479	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
AP003390.1(4496),AP001994.1(77185)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744119	14:78082961	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
TM9SF4	AP001599.1	+/.	+/.	20:32160146	21:26914103	intron	intron	translocation/5'-5'	0	0	0	4	167	low	.	.	.	.	.	ENSG00000101337	ENSG00000223563	.	.	downstream	downstream	mismatches(2)	.	.	.
AC079949.3	FP671120.4	+/.	+/.	12:127165982	21:8214791	intron	intron	translocation	0	0	0	11	5263	low	.	.	.	.	.	ENSG00000286016	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	AF064860.1	-/.	+/.	10:104479902	21:39679803	intron	intron	translocation/3'-3'	0	0	0	1761	34	low	.	.	.	.	.	ENSG00000225768	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214791	21:8218866	intron	intron	inversion/3'-3'	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
ASIC2	AC008878.3	-/.	+/.	17:33559943	19:7418172	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000108684	ENSG00000268861	.	.	upstream	downstream	mismatches(2)	.	.	.
PLSCR5(28163),AC092957.1(275306)	DHFR	./.	-/.	3:146634379	5:80651299	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000228716	.	.	upstream	downstream	mismatches(1)	.	.	.
NIPA1	AC008878.3	+/.	+/.	15:22811143	19:7418172	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000170113	ENSG00000268861	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025183.2(16914),IRX4(609)	FP236383.3	./.	+/.	5:1876804	21:8397826	intergenic	intron	translocation	0	0	0	8	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NIPA1	ARHGEF18	+/.	+/.	15:22811143	19:7418172	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000170113	ENSG00000104880	.	.	upstream	downstream	mismatches(1)	.	.	.
AC021723.1(27322),RNU6-99P(71818)	AC008878.3	./.	+/.	11:39189289	19:7418172	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000268861	.	.	downstream	downstream	mismatches(1)	.	.	.
PGBD2	ZNF883	+/.	-/.	1:248906244	9:113010077	5'UTR	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185220	ENSG00000228623	.	.	upstream	upstream	mismatches(1)	.	.	.
AC021723.1(27322),RNU6-99P(71818)	ARHGEF18	./.	+/.	11:39189289	19:7418172	intergenic	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	.	ENSG00000104880	.	.	downstream	downstream	mismatches(1)	.	.	.
TONSL	RPL21P12(17605),GCSHP2(17191)	-/.	./.	8:144444118	14:103167013	intron	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000160949	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM20C	RPL21P12(17605),GCSHP2(17191)	+/+	./-	7:193660	14:103167013	CDS	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000177706	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TACC2	RPL21P12(17605),GCSHP2(17191)	+/+	./-	10:122163739	14:103167013	5'UTR	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000138162	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC00376(68569),AL359208.1(313)	LINC00114(198),ETS2(57525)	./.	./.	13:63396698	21:38747658	intergenic	intergenic	translocation	0	0	0	0	10	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
IGF2R	TSNARE1	+/+	-/+	6:159969259	8:142306174	CDS	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000197081	ENSG00000171045	.	.	downstream	upstream	mismatches(1)	.	.	.
TNIP3(17771),QRFPR(83405)	MN1(31685),PITPNB(18228)	./.	./.	4:121245237	22:27833441	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC254629.1	RPL21P12(17605),GCSHP2(17191)	-/-	./-	7:100966578	14:103167013	exon	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000274993	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TRBV24OR9-2(9135),TRBV25OR9-2(3417)	RPL10L(115581),MDGA2(72267)	./.	./.	9:33658749	14:46767362	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),mismatches(1)	.	.	.
NDRG2	RPL21P12(17605),GCSHP2(17191)	-/-	./-	14:21025229	14:103167013	5'UTR	intergenic	duplication	0	0	0	0	22	low	.	.	.	.	.	ENSG00000165795	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MIR210HG	RPL21P12(17605),GCSHP2(17191)	-/.	./.	11:568432	14:103167013	exon	intergenic	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000247095	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(18845)	FP236383.3	./.	+/.	14:16038627	21:8400075	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC111193.1(23590),ARSJ(36458)	AC092138.2(85726),AC022164.1(128439)	./.	./.	4:113863826	16:65732673	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(18845)	FP236383.3	./.	+/.	14:16038627	21:8444310	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
5_8S_rRNA(18863)	FP671120.4	./.	+/.	14:16038609	21:8217040	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZP3	FP236383.3	+/.	+/.	7:76423229	21:8400075	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000188372	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZP3	FP671120.4	+/.	+/.	7:76423229	21:8217040	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000188372	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZP3	FP236383.3	+/.	+/.	7:76423247	21:8400075	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000188372	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ZP3	FP671120.4	+/.	+/.	7:76423247	21:8217040	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000188372	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	5_8S_rRNA(18971),CT867976.1(205814)	+/.	./.	21:8400075	22:11268930	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC143336.1(94794),AC025774.1(236687)	KMT2A	./.	+/.	5:71851095	11:118436772	intergenic	CDS	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000118058	.	.	upstream	upstream	mismatches(1)	.	.	.
AUTS2	LAMA5	+/.	-/.	7:70496881	20:62337135	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000158321	ENSG00000130702	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	5_8S_rRNA(18971),CT867976.1(205814)	+/.	./.	21:8444310	22:11268930	intron	intergenic	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HERPUD1	ADCY1	+/+	+/+	16:56932280	7:45682481	CDS	intron	translocation	0	0	0	0	0	low	.	.	|Adenylate_and_Guanylate_cyclase_catalytic_domain(52%)	.	.	ENSG00000051108	ENSG00000164742	.	.	downstream	upstream	mismatches(1)	.	.	.
CFAP58	AP003390.1(4486),AP001994.1(77195)	+/.	./.	10:104396370	11:119744109	intron	intergenic	translocation	0	0	0	558	3583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	low_entropy	.	.	.
RNU6-1312P(217523),CRLF3P3(155775)	NDUFA1(11969),AKAP14(7206)	./.	./.	2:83875365	X:119888631	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC200	FP236383.3	-/.	+/.	17:43295980	21:8444310	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000236383	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL157702.2(55465),AL157702.1(20674)	FP236383.3	./.	+/.	9:113738320	21:8400075	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL157702.2(55465),AL157702.1(20674)	FP671120.4	./.	+/.	9:113738320	21:8217040	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAFG-DT	AL359237.1	+/+	-/+	17:81928147	14:87766771	exon	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000265688	ENSG00000258807	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL359237.1	FP236383.3	-/.	+/.	14:87766771	21:8400075	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000258807	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ENPP5	FP236383.3	-/.	+/.	6:46166260	21:8400075	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000112796	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ENPP5	FP671120.4	-/.	+/.	6:46166260	21:8217040	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000112796	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LETM1	KHDRBS3(10435),RNU1-35P(75186)	-/.	./.	4:1841524	8:135667157	CDS	intergenic	translocation	0	0	0	32	0	low	.	.	.	.	.	ENSG00000168924	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
GAPDHP36(89379),RALBP1P1(20620)	FP236383.3	./.	+/.	3:180302487	21:8401256	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CCDC200	FP236383.3	-/.	+/.	17:43251365	21:8400075	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000236383	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SRP14P4(39612),GM2AP2(7310)	FP236383.3	./.	+/.	1:171384919	21:8397444	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC011383.1	RFPL4AP7(64492),AC090155.2(79427)	-/.	./.	5:150612026	8:49417336	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000253852	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01163	LINC01163	+/.	+/.	10:128239620	10:128239635	intron	intron	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000280953	ENSG00000280953	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
AC104041.1	AC104041.1	-/.	-/.	15:81683459	15:81683470	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259692	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
AC022384.1	FP671120.4	+/.	+/.	3:10249514	21:8214796	CDS	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000272410	ENSG00000278996	.	.	upstream	upstream	duplicates(3),mismatches(2)	.	.	.
ALKAL1(41815),RB1CC1(15213)	ALKAL1(41863),RB1CC1(15165)	./.	./.	8:52607245	8:52607293	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AC078909.2(56406),Metazoa_SRP(50227)	AC078909.2(56415),Metazoa_SRP(50218)	./.	./.	15:37166390	15:37166399	intergenic	intergenic	duplication/ITD	0	0	0	3	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
RPS6P15(234559),AL136119.1(53733)	RPS6P15(234574),AL136119.1(53718)	./.	./.	10:111733500	10:111733515	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
AL353740.1(140358),LINC02661(6366)	AL353740.1(140408),LINC02661(6316)	./.	./.	10:108702173	10:108702223	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
RHBDL2	MRPL13	-/.	-/.	1:38895536	8:120418520	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000158315	ENSG00000172172	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ST6GALNAC3	AC064801.2	+/.	+/.	1:76541273	18:62551948	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184005	ENSG00000279236	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01293(15900),POLE4(73)	UBE2W	./.	-/.	2:74958570	8:73820102	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104343	.	.	downstream	upstream	mismatches(1)	.	.	.
GAP43	FP236383.3	+/.	+/.	3:115698680	21:8444816	intron	intron	translocation/3'-3'	0	0	0	4	62	low	.	.	.	.	.	ENSG00000172020	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GAP43	SLCO5A1	+/.	-/.	3:115698680	8:69690369	intron	intron	translocation/3'-3'	0	0	0	4	53	low	.	.	.	.	.	ENSG00000172020	ENSG00000137571	.	.	upstream	downstream	mismatches(1)	.	.	.
AC128676.1(537858),RNU6-417P(197927)	SLCO5A1	./.	-/.	7:62813536	8:69690369	intergenic	intron	translocation	0	0	0	0	53	low	.	.	.	.	.	.	ENSG00000137571	.	.	downstream	downstream	mismatches(1)	.	.	.
NR6A1	ARHGEF40	-/.	+/.	9:124593453	14:21071327	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000148200	ENSG00000165801	.	.	downstream	upstream	mismatches(1)	.	.	.
GGPS1	AL049732.1(35156),TRO(43172)	+/.	./.	1:235327619	X:54877290	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	.	.	.	upstream	downstream	mismatches(1)	.	.	.
EFR3B	MSH3	+/.	+/.	2:25061240	5:80854005	intron	intron	translocation/5'-5'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000084710	ENSG00000113318	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC39A14	SLC39A14	+/.	+/.	8:22396435	8:22396533	intron	intron	duplication/ITD	0	0	0	38	31	low	.	.	.	.	.	ENSG00000104635	ENSG00000104635	.	.	upstream	downstream	low_entropy(2)	.	.	.
GGPS1	H4-16	+/.	-/.	1:235327619	12:14769960	intron	exon	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000197837	.	.	upstream	downstream	mismatches(1)	.	.	.
ARID4B	AC016831.6	-/.	-/.	1:235327619	7:131031648	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000285106	.	.	upstream	upstream	mismatches(1)	.	.	.
GGPS1	AC016831.6	+/.	-/.	1:235327619	7:131031648	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000285106	.	.	upstream	upstream	mismatches(1)	.	.	.
DENND2B	AAMDC	-/.	+/.	11:8868036	11:77886437	intron	intron	deletion/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000166444	ENSG00000087884	.	.	downstream	upstream	mismatches(1)	.	.	.
ANP32B	AC109136.1(34094),AC109462.1(176557)	+/.	./.	9:97983496	16:55083412	5'UTR	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000136938	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ARID4B	SUPT16H	-/.	-/.	1:235327619	14:21383687	intron	CDS	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000092201	.	.	upstream	downstream	mismatches(1)	.	.	.
GGPS1	SUPT16H	+/.	-/.	1:235327619	14:21383687	intron	CDS	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000092201	.	.	upstream	downstream	mismatches(1)	.	.	.
ARID4B	SYT8	-/.	+/.	1:235327619	11:1832516	intron	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000149043	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02241	LINC02241	+/.	+/.	5:20674814	5:20674829	intron	intron	duplication/ITD	0	0	0	37	33	low	.	.	.	.	.	ENSG00000251629	ENSG00000251629	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
GGPS1	AC120193.1	+/.	-/.	1:235327619	8:24904958	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000152904	ENSG00000253535	.	.	upstream	downstream	mismatches(1)	.	.	.
ARID4B	ERC2	-/.	-/.	1:235327619	3:55815738	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000187672	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAH14	LINC02620	+/.	-/.	1:225078878	10:104479909	intron	intron	translocation	0	0	0	171	1761	low	.	.	.	.	.	ENSG00000185842	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
AF117829.1	DLG2	-/.	-/.	8:89757724	11:83809291	exon	intron	translocation/3'-3'	0	0	0	4	2	low	.	.	.	.	.	ENSG00000251136	ENSG00000150672	.	.	downstream	downstream	mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	MXRA5(14433),ASS1P4(6064)	./.	./.	8:37342743	X:3361085	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
KCTD13	AC091182.1(10752),AC091182.2(62696)	-/-	./+	16:29926044	8:37342743	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174943	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	AP003390.1(4503),AP001994.1(77178)	-/.	./.	6:42262464	11:119744126	intron	intergenic	translocation	0	0	0	2363	3002	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	low_entropy	.	.	.
INSIG1	AC091182.1(10752),AC091182.2(62696)	+/.	./.	7:155298121	8:37342743	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000186480	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	MIRLET7BHG	./.	+/.	8:37342743	22:46072466	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000197182	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02469(85474),PCAT4(45160)	DLG2	./.	-/.	4:79782311	11:85484188	intergenic	intron	translocation	2	0	0	2	279	low	.	.	.	.	.	.	ENSG00000150672	.	.	downstream	upstream	intronic,mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	JPH3	./.	+/.	8:37342743	16:87690078	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000154118	.	.	upstream	upstream	mismatches(1)	.	.	.
AC091182.1(10752),AC091182.2(62696)	FAM118A	./.	+/.	8:37342743	22:45334837	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000100376	.	.	upstream	downstream	mismatches(1)	.	.	.
GBX2	AC091182.1(10752),AC091182.2(62696)	-/.	./.	2:236168232	8:37342743	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168505	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214788	21:8442164	intron	intron	duplication	0	0	0	5263	81	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DENND1A	RPSAP61(14940),RN7SL291P(15869)	-/.	./.	9:123387697	X:44756904	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000119522	.	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
FAM20C(23169),FOXL3(6229)	FRMD6-AS2	./.	-/.	7:283941	14:51587852	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000258537	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM20C(23169),FOXL3(6229)	FRMD6	./.	+/.	7:283941	14:51587852	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000139926	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104777.1	RPL14P5(126725),CRLF2(50723)	-/.	./.	2:150617538	X:1136826	intron	intergenic	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ADAMTS9-AS2	ADAMTS9-AS2	+/.	+/.	3:64736204	3:64736219	intron	intron	duplication/ITD	0	0	0	57	13	low	.	.	.	.	.	ENSG00000241684	ENSG00000241684	.	.	upstream	downstream	duplicates(3),low_entropy(2)	.	.	.
DLG2	FRMD6-AS2	-/.	-/.	11:83809290	14:51587852	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000150672	ENSG00000258537	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(92914),RNA5SP103(1240)	BICC1	./.	+/.	2:128443841	10:58688003	intergenic	intron	translocation	0	0	0	7	87	low	.	.	.	.	.	.	ENSG00000122870	.	.	downstream	downstream	duplicates(3),homopolymer(3)	.	.	.
RBM34	FAM20C(23169),FOXL3(6229)	-/.	./.	1:234997587	7:283941	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000188739	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ARID4B	NPAS3	-/.	+/.	1:234997587	14:33490812	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000054267	ENSG00000151322	.	.	upstream	upstream	mismatches(1)	.	.	.
RBM34	DLG2	-/.	-/.	1:234997587	11:83809290	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000188739	ENSG00000150672	.	.	upstream	downstream	mismatches(1)	.	.	.
ARID4B	DLG2	-/.	-/.	1:234997587	11:83809290	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000054267	ENSG00000150672	.	.	upstream	downstream	mismatches(1)	.	.	.
TENM2	FP236383.3	+/.	+/.	5:168236204	21:8437518	intron	intron	translocation/3'-3'	0	0	0	0	22	low	.	.	.	.	.	ENSG00000145934	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
IL6R	AC091182.1(10752),AC091182.2(62696)	+/+	./+	1:154405378	8:37342743	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000160712	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM20C(23170),FOXL3(6228)	AF117829.1	./.	-/.	7:283942	8:89757724	intergenic	exon	translocation	0	0	0	2	4	low	.	.	.	.	.	.	ENSG00000251136	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4492),AP001994.1(77189)	FP236383.3	./.	+/.	11:119744115	21:8414018	intergenic	intron	translocation	0	0	0	3583	63	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
LINC02620	FP236383.3	-/.	+/.	10:104479908	21:8414018	intron	intron	translocation/3'-3'	0	0	0	1761	63	low	.	.	.	.	.	ENSG00000225768	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
DHFR	5_8S_rRNA(1694),FP236383.3(122016)	-/.	./.	5:80650270	21:8258627	intron	intergenic	translocation	0	0	0	68	44	low	.	.	.	.	.	ENSG00000228716	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PROM1(9723),AC108063.2(20132)	PROM1(9792),AC108063.2(20063)	./.	./.	4:16094101	4:16094170	intergenic	intergenic	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(3)	.	.	.
AC008517.1(35511),CCT7P2(8884)	AL355836.3	./.	-/.	5:92880503	14:101193603	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000288245	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC060809.1	AC060809.1	+/.	+/.	15:81683464	15:81683473	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259543	.	.	upstream	downstream	duplicates(2)	.	.	.
AC060809.1	AC104041.1	+/.	-/.	15:81683464	15:81683473	intron	intron	duplication/3'-3'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259543	ENSG00000259692	.	.	upstream	downstream	duplicates(2)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8441662	MT:2448	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
AC023034.1	AC023034.1	+/.	+/.	15:81683464	15:81683473	intron	intron	duplication/ITD	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259594	.	.	upstream	downstream	duplicates(2)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1373618	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01004	AP001599.1	-/.	+/.	7:105012798	21:26914102	intron	intron	translocation/5'-5'	0	0	0	4	167	low	.	.	.	.	.	ENSG00000228393	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
MTND1P22(591),AC107208.1(31696)	RN7SKP263(6593),AC123567.1(124437)	./.	./.	4:155464414	12:94015640	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	duplicates(4),mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683464	15:81683473	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(2)	.	.	.
ENTPD1-AS1	FP671120.4	-/.	+/.	10:95984176	21:8215397	intron	intron	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000226688	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683464	15:81683473	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(2)	.	.	.
DPPA3P3(79051),LINC00564(31519)	AC064801.2	./.	+/.	13:81194346	18:62551947	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000279236	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
NOTCH2NLA	AC068473.3	-/.	+/.	1:146160781	18:79577928	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000264343	ENSG00000267287	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01198(14971),LRCH1(22239)	LINC01198(15027),LRCH1(22183)	./.	./.	13:46530929	13:46530985	intergenic	intergenic	duplication/ITD	0	0	0	45	44	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),merge_adjacent	.	.	.
TMPRSS6(15798),IL2RB(332)	TMPRSS6(15854),IL2RB(276)	./.	./.	22:37125511	22:37125567	intergenic	intergenic	duplication/ITD	0	0	0	17	17	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
MYO5B	MYO5B	-/.	-/.	18:50122589	18:50122685	intron	intron	duplication/ITD	0	0	0	0	13	low	.	.	.	.	.	ENSG00000167306	ENSG00000167306	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
AC117834.2	ATP6V1G1P7(508682),AL136524.1(172280)	+/+	./-	8:92776238	13:103953650	exon	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000253577	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CDH8	FP236383.3	-/.	+/.	16:61831043	21:8389450	intron	intron	translocation/3'-3'	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ARHGAP39(59246),Metazoa_SRP(18107)	LINC00273(596),RNA5-8SP2(2327)	./.	./.	8:144665062	16:34160632	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DAAM1	PACSIN2	+/.	-/.	14:59318343	22:42960450	intron	intron	translocation	0	1	0	0	0	low	.	.	.	.	.	ENSG00000100592	ENSG00000100266	.	.	upstream	upstream	min_support	.	.	.
DCP1A	LINC00273(596),RNA5-8SP2(2327)	-/.	./.	3:53344923	16:34160632	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000272886	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DHFR	MT-RNR2	-/.	+/.	5:80650543	MT:2450	intron	exon	translocation/3'-3'	0	0	0	8	.	low	.	.	.	.	.	ENSG00000228716	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LMNA	LRRFIP1	+/+	+/+	1:156139608	2:237744852	3'UTR	intron	translocation	0	0	0	6	0	low	.	.	Intermediate_filament_protein(100%),Lamin_Tail_Domain(100%)|LRRFIP_family(80%)	.	.	ENSG00000160789	ENSG00000124831	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214810	21:8442057	intron	intron	deletion/read-through	0	0	0	6035	5962	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
CLIP3	AC092720.3(18073),AC092720.1(60118)	-/-	./+	19:36026157	16:87535013	CDS	intergenic	translocation	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NRP1	RPL12P4(19716),LINC01440(314042)	-/.	./.	10:33334709	20:55094856	5'UTR	intergenic	translocation	0	0	0	21	0	low	.	.	.	.	.	ENSG00000099250	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214810	21:8397827	intron	intron	deletion/read-through	0	0	0	6035	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RN7SKP167(12274),FGFR2(54858)	LINC00871	./.	+/.	10:121423474	14:46105933	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000258700	.	.	downstream	upstream	mismatches(2)	.	.	.
IKZF1(6399),RNU6-1091P(23880)	ZNF302(39542),AC020910.5(7359)	./.	./.	7:50411500	19:34725939	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2106),FP236383.3(121604)	FP236383.3	./.	+/.	21:8259039	21:8442057	intergenic	intron	deletion/read-through	0	0	0	5782	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	MIR4300HG	./.	-/.	3:137274346	11:82143176	intergenic	intron	translocation	0	0	0	71	1095	low	.	.	.	.	.	.	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
FP671120.4	FP671120.3(3890),FP671120.7(553)	+/.	./.	21:8214795	21:8254039	intron	intergenic	inversion	0	0	0	5263	57	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TNFRSF8(4018),MIR7846(18718)	AC009154.1	./.	+/.	1:12148225	16:86665156	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000261161	.	.	upstream	downstream	homopolymer(1)	.	.	.
UST	AC092184.1(2875),AICDA(1655)	+/.	./.	6:149032207	12:8600515	intron	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000111962	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRC4C	LRRC4C	-/.	-/.	11:41021157	11:41021211	intron	intron	duplication/ITD	0	0	0	632	632	low	.	.	.	.	.	ENSG00000148948	ENSG00000148948	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AL354702.1	UST	-/.	+/.	1:38786665	6:149032206	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000284632	ENSG00000111962	.	.	downstream	downstream	mismatches(1)	.	.	.
AC106870.3	NACC2	-/.	-/.	2:29845744	9:136019086	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000288553	ENSG00000148411	.	.	upstream	upstream	mismatches(1)	.	.	.
UST-AS2	AC092184.1(2875),AICDA(1655)	-/.	./.	6:149032207	12:8600515	intron	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000236591	.	.	.	downstream	downstream	mismatches(1)	.	.	.
BTBD11	FP671120.4	+/.	+/.	12:107400730	21:8215098	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000151136	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
AL354702.1	BAHCC1	-/.	+/.	1:38786665	17:81445119	intron	CDS	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000284632	ENSG00000266074	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	Y_RNA(5791),MAP7D2(15763)	+/.	./.	21:8216871	X:19990950	intron	intergenic	translocation	0	0	0	1	18	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TPT1P14(48518),RPL35AP37(90456)	TPT1P14(48531),RPL35AP37(90443)	./.	./.	X:15026981	X:15026994	intergenic	intergenic	duplication/ITD	0	0	0	26	10	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
TATDN2	TMEM104	+/.	+/.	3:10249513	17:74792675	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157014	ENSG00000109066	.	.	upstream	downstream	mismatches(1)	.	.	.
AC022384.1	TMEM104	+/.	+/.	3:10249513	17:74792675	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000272410	ENSG00000109066	.	.	upstream	downstream	mismatches(1)	.	.	.
AC012363.2(19700),INHBB(138)	HTR2A(323059),GNG5P5(86947)	./.	./.	2:120345998	13:47220135	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ANP32B	DDB2	+/.	+/.	9:97983495	11:47233101	5'UTR	intron	translocation	0	0	0	8	341	low	.	.	.	.	.	ENSG00000136938	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
AC012363.2(19700),INHBB(138)	GPR151(20553),AC008728.1(26483)	./.	./.	2:120345998	5:146536743	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02663(164937),LINC02670(15725)	5_8S_rRNA(1692),FP236383.3(122018)	./.	./.	10:10042997	21:8258625	intergenic	intergenic	translocation	0	0	0	5	44	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MED30(182044),EXT1(72184)	TAF4	./.	-/.	8:117722306	20:62028186	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000130699	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SMYD2	NGRN	+/.	+/.	1:214296555	15:90270297	intron	intron	translocation/3'-3'	0	0	0	14	14	low	.	.	.	.	.	ENSG00000143499	ENSG00000182768	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MRPL13	AL356295.1	-/.	+/.	8:120418520	13:53764791	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172172	ENSG00000287722	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
DDX43P2(110159),AC092448.1(154203)	DDX43P2(110210),AC092448.1(154152)	./.	./.	7:49370005	7:49370056	intergenic	intergenic	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),merge_adjacent	.	.	.
THEMIS	SLC41A2	-/.	-/.	6:127735531	12:104952396	intron	intron	translocation	0	0	0	33	0	low	.	.	.	.	.	ENSG00000172673	ENSG00000136052	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02041(107764),SST(111698)	BCRP9(38368),NPM1P22(2714)	./.	./.	3:187557214	13:67829162	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
SH3YL1	FRMD8	-/.	+/.	2:253462	11:65394799	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000035115	ENSG00000126391	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNU6-1236P(9528),AC063923.1(6752)	AC064801.2	./.	+/.	3:109234755	18:62551947	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000279236	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC079193.1(4367),ZDHHC2(1227)	TESC	./.	-/.	8:17155255	12:117069054	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000088992	.	.	downstream	downstream	mismatches(1)	.	.	.
AC092757.2	AC025627.3	+/.	+/.	15:59122737	17:19601314	intron	exon	translocation	0	0	0	0	23	low	.	.	.	.	.	ENSG00000259732	ENSG00000266179	.	.	downstream	upstream	duplicates(4),mismatches(1)	.	.	.
NOTCH2(12177),RNU6-465P(14018)	GCK	./.	-/.	1:120112956	7:44149936	intergenic	intron	translocation	0	0	0	4	7	low	.	.	.	.	.	.	ENSG00000106633	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PAXBP1(173),C21orf62-AS1(135)	GPC3	./.	-/.	21:32771965	X:133661634	intergenic	intron	translocation	0	0	0	122	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
GRB10(270),AC004920.1(45631)	AC064801.2	./.	+/.	7:50793732	18:62551947	intergenic	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000279236	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
LINC01205	LINC00630	+/.	+/.	3:109700822	X:102809209	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228980	ENSG00000223546	.	.	upstream	downstream	mismatches(1)	.	.	.
LRRC4B	AL807742.1	-/.	-/.	19:50548287	X:20832154	intron	intron	translocation/3'-3'	0	0	0	14	2	low	.	.	.	.	.	ENSG00000131409	ENSG00000283380	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479799	10:104479826	intron	intron	duplication/ITD	0	0	0	1798	1798	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(2)	.	.	.
LINC00271	LINC00871	+/.	+/.	6:135650949	14:46105933	intron	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	ENSG00000231028	ENSG00000258700	.	.	downstream	upstream	mismatches(2)	.	.	.
LINC02782(112132),AL139823.1(98897)	Metazoa_SRP(49193),PAX2(19401)	./.	./.	1:5203031	10:100716202	intergenic	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC121334.1(19777),AC121334.2(52459)	LAMA3	./.	+/.	12:39487122	18:23756906	intergenic	intron	translocation	0	0	0	49	0	low	.	.	.	.	.	.	ENSG00000053747	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
LINC02782(112132),AL139823.1(98897)	WDR81	./.	+/.	1:5203031	17:1724796	intergenic	5'UTR	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000167716	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AP001823.1(3429),ELMOD1(759)	FXNP1(22683),NRXN3(87412)	./.	./.	11:107590332	14:78082961	intergenic	intergenic	translocation	0	0	0	1909	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
FXNP1(22689),NRXN3(87406)	FXNP1(22698),NRXN3(87397)	./.	./.	14:78082967	14:78082976	intergenic	intergenic	duplication/ITD	0	0	0	424	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
AGAP1	AC093515.1	+/.	-/.	2:235775619	16:7970721	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157985	ENSG00000260289	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105148.1(158330),AC116634.1(46057)	FP236383.3	./.	+/.	4:167900617	21:8442659	intergenic	intron	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP003390.1(4506),AP001994.1(77175)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744129	14:78082961	intergenic	intergenic	translocation	0	0	0	3002	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	AC244102.4	+/.	-/.	2:32916256	X:152576445	intron	intron	translocation	0	0	0	90	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000287394	.	.	upstream	upstream	mismatches	.	.	.
AP003390.1(4488),AP001994.1(77193)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744111	14:78082961	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
C2orf83	C2orf83	-/.	-/.	2:227643250	2:227643292	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000042304	ENSG00000042304	.	.	upstream	downstream	duplicates(23),low_entropy(9)	.	.	.
AP003390.1(4492),AP001994.1(77189)	FXNP1(22683),NRXN3(87412)	./.	./.	11:119744115	14:78082961	intergenic	intergenic	translocation	0	0	0	3583	424	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
AP001823.1(3432),ELMOD1(756)	FXNP1(22683),NRXN3(87412)	./.	./.	11:107590335	14:78082961	intergenic	intergenic	translocation	0	0	0	1909	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
U3(104497),GPC1(41723)	GTF2IRD1P1	./.	-/.	2:240393940	7:66824572	intergenic	intron	translocation	0	0	0	357	8	low	.	.	.	.	.	.	ENSG00000230583	.	.	upstream	downstream	duplicates(6),mismatches(15)	.	.	.
AC093627.22	AL513321.1(21925),AL592466.1(602)	-/.	./.	7:117610	10:65270717	intron	intergenic	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
LINC02620	FXNP1(22683),NRXN3(87412)	-/.	./.	10:104479909	14:78082961	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
MTRNR2L8	MT-RNR2	-/.	+/.	11:10508898	MT:2439	5'UTR	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000255823	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
LINC02620	FXNP1(22683),NRXN3(87412)	-/.	./.	10:104479904	14:78082961	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
NRIP3	AL133229.1(221616),AL049812.2(56924)	-/-	./-	11:9003964	20:41934216	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02620	FXNP1(22683),NRXN3(87412)	-/.	./.	10:104479906	14:78082961	intron	intergenic	translocation	0	0	0	1761	424	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
B3GALNT1	5_8S_rRNA(2094),FP236383.3(121616)	-/.	./.	3:161095878	21:8259027	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000169255	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AP001823.1(3434),ELMOD1(754)	FXNP1(22683),NRXN3(87412)	./.	./.	11:107590337	14:78082961	intergenic	intergenic	translocation	0	0	0	1909	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
AP001823.1(3436),ELMOD1(752)	FXNP1(22683),NRXN3(87412)	./.	./.	11:107590339	14:78082961	intergenic	intergenic	translocation	0	0	0	1909	424	low	.	.	.	.	.	.	.	.	.	upstream	upstream	low_entropy	.	.	.
PLXNB1	CCDC171	-/.	+/.	3:48425329	9:15695782	5'UTR	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000164050	ENSG00000164989	.	.	downstream	downstream	mismatches(1)	.	.	.
AC069545.1(103002),ZWINT(507317)	HCFC2P1(19973),MYO16(94362)	./.	./.	10:55849910	13:108501790	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LIMD1	BCAP31P1(12082),AC133561.2(9761)	+/.	./.	3:45593628	16:34003633	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000144791	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CACNA1C	FP236383.3	+/.	+/.	12:2315052	21:8398430	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000151067	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2315),DUX4L32(19263)	+/.	./.	2:32916400	20:29299561	intron	intergenic	translocation	0	0	0	55	0	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	mismatches	.	.	.
SV2C	AC044873.1(14233),AC091027.2(97724)	+/.	./.	5:76304230	18:78810905	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000122012	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916400	21:8393261	intron	intron	translocation/5'-5'	0	0	0	55	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
CHD7	ISCA1P2(11034),LINC02814(33489)	+/+	./+	8:60679081	1:229053625	5'UTR/splice-site	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171316	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTRNR2L12	FP671120.4	-/.	+/.	3:96618106	21:8214396	5'UTR	intron	translocation/3'-3'	0	0	0	75	540	low	.	.	.	.	.	ENSG00000269028	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
TYRO3(16291),AC016134.1(9577)	TYRO3(16366),AC016134.1(9502)	./.	./.	15:41599880	15:41599955	intergenic	intergenic	duplication/ITD	0	0	0	102	102	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(8),low_entropy(5),merge_adjacent	.	.	.
ISCA1P2(11034),LINC02814(33489)	SALL2	./.	-/.	1:229053625	14:21526052	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165821	.	.	upstream	downstream	mismatches(1)	.	.	.
MIR4300HG	MIR4300HG	-/.	-/.	11:82143078	11:82143176	intron	intron	duplication/ITD	0	0	0	1119	1095	low	.	.	.	.	.	ENSG00000245832	ENSG00000245832	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ISCA1P2(11034),LINC02814(33489)	MIR3201(20970),AL008720.2(25027)	./.	./.	1:229053625	22:48295385	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CCSAP(2252),RNU6-180P(37582)	FP671120.4	./.	+/.	1:229345546	21:8216771	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
CCSAP(2252),RNU6-180P(37582)	FP236383.3	./.	+/.	1:229345546	21:8399805	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
HMGB3P23(291566),RNA5SP281(356832)	LRR1	./.	+/.	9:31936726	14:49599727	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000165501	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
RPL28	SHD	+/+	+/+	19:55386174	19:4283869	5'UTR	intron	duplication	0	0	0	0	0	low	.	.	|SH2_domain(100%)	.	.	ENSG00000108107	ENSG00000105251	.	.	downstream	upstream	duplicates(2),homopolymer(1)	.	.	.
CCSAP(2252),RNU6-180P(37582)	FP236383.3	./.	+/.	1:229345546	21:8444040	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TMOD3	FP671120.4	+/.	+/.	15:51854578	21:8216771	intron	intron	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000138594	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
TMOD3	FP236383.3	+/.	+/.	15:51854578	21:8399805	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138594	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ISCA1P2(11040),LINC02814(33483)	FP236383.3	./.	+/.	1:229053631	21:8399805	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CHGA	CHGA	+/+	+/+	14:92931294	14:92931264	CDS	CDS	duplication/ITD	0	0	0	6	6	low	.	.	Granin_(chromogranin_or_secretogranin)(25%)|Granin_(chromogranin_or_secretogranin)(77%)	.	.	ENSG00000100604	ENSG00000100604	.	.	downstream	upstream	duplicates(11),hairpin(1)	.	.	.
ISCA1P2(11034),LINC02814(33489)	RNF39	./.	-/.	1:229053625	6:30074367	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000204618	.	.	upstream	upstream	mismatches(1)	.	.	.
HCG22(17732),RNU6-1133P(5388)	RPS27AP20(98222),BX890604.1(1706)	./.	./.	6:31077622	X:3815822	intergenic	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ABHD14A	AC008691.1	+/+	+/+	3:51973857	5:159645743	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248487	ENSG00000249738	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
FP671120.6	LINC01897(19535),HMGN1P30(34825)	-/-	./+	21:8210561	18:57983969	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ISCA1P2(11034),LINC02814(33489)	MAP7D2	./.	-/.	1:229053625	X:20061554	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000184368	.	.	upstream	upstream	mismatches(1)	.	.	.
RAD51	ISCA1P2(11034),LINC02814(33489)	+/+	./+	15:40695578	1:229053625	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000051180	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104041.1	AC060809.1	-/.	+/.	15:81683470	15:81683479	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259543	.	.	upstream	downstream	duplicates(1)	.	.	.
RPL6P21(23502),DGKB(50167)	TFAP2C(6163),RNU6-1146P(21984)	./.	./.	7:14094882	20:56645446	intergenic	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC025741.1	LINC02823(34381),AC090016.1(20793)	+/.	./.	4:120639103	12:91402988	exon	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249409	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ISCA1P2(11034),LINC02814(33489)	PTGIS(14948),B4GALT5(49860)	./.	./.	1:229053625	20:49583085	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL593844.1	AC025627.3	+/.	+/.	6:68230113	17:19601313	intron	exon	translocation/3'-3'	0	0	0	0	23	low	.	.	.	.	.	ENSG00000286564	ENSG00000266179	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023632.3(700),AC023632.4(3452)	NDUFB9P3(84563),LINC01608(5539)	./.	./.	8:94590959	8:110894457	intergenic	intergenic	inversion	0	0	0	22	30	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RNU11(14226),GMEB1(5819)	ISCA1P2(11034),LINC02814(33489)	./.	./.	1:28662959	1:229053625	intergenic	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM120B	MT-RNR2	+/.	+/.	12:121782557	MT:2447	exon	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000188735	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
TRERF1	LINC02620	-/.	-/.	6:42262463	10:104479909	intron	intron	translocation	0	0	0	2363	1761	low	.	.	.	.	.	ENSG00000124496	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
AL449106.1	AC005921.1(11317),WFIKKN2(25682)	-/-	./-	1:178725055	17:50808968	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
VPS51	KLHL29	+/+	+/-	11:65096265	2:23385624	CDS	5'UTR	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000149823	ENSG00000119771	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MED13L	MED13L	-/.	-/.	12:116120433	12:116120478	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000123066	ENSG00000123066	.	.	upstream	downstream	low_entropy(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479894	intron	intron	duplication/3'-3'	0	0	0	558	2216	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	duplicates	.	.	.
AC005040.2(251509),LINC01789(6648)	FP236383.3	./.	+/.	2:107248043	21:8441948	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PRMT8	THCAT155	+/.	-/.	12:3490676	12:3490689	intron	intron	duplication/3'-3'	0	0	0	8	8	low	.	.	.	.	.	ENSG00000111218	ENSG00000287243	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
USP31	5_8S_rRNA(1980),FP236383.3(121730)	-/.	./.	16:23069257	21:8258913	CDS	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000103404	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DNAH5	FP671120.4	-/.	+/.	5:13930774	21:8214690	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000039139	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1369424	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
DNAH5	5_8S_rRNA(1980),FP236383.3(121730)	-/.	./.	5:13930774	21:8258913	intron	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000039139	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AL392086.3	AMER2	-/.	-/.	10:6996395	13:25171819	intron	5'UTR	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287277	ENSG00000165566	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104042.1(183659),AC061997.1(820599)	FP236383.3	./.	+/.	11:36881526	21:8446140	intergenic	intron	translocation	0	0	0	1	11	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	TENT5D	+/.	+/.	21:8214690	X:80336904	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000174016	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1980),FP236383.3(121730)	TENT5D	./.	+/.	21:8258913	X:80336904	intergenic	intron	translocation	0	0	0	31	0	low	.	.	.	.	.	.	ENSG00000174016	.	.	upstream	upstream	mismatches(1)	.	.	.
BTF3P15(35676),AL390123.1(91148)	5_8S_rRNA(1980),FP236383.3(121730)	./.	./.	10:109570666	21:8258913	intergenic	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNIP1	5_8S_rRNA(1980),FP236383.3(121730)	+/.	./.	5:170576935	21:8258913	intron	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000182132	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MAF1	NEDD4L	+/+	+/+	8:144107526	18:58389148	3'UTR	CDS	translocation	0	0	0	0	2	low	.	.	Maf1_regulator(100%)|HECT-domain_(ubiquitin-transferase)(33%)	.	.	ENSG00000179632	ENSG00000049759	.	.	downstream	upstream	mismatches(1)	.	.	.
CUBN	FP671120.4	-/.	+/.	10:17060634	21:8214690	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000107611	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
CUBN	5_8S_rRNA(1980),FP236383.3(121730)	-/.	./.	10:17060634	21:8258913	intron	intergenic	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000107611	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC112198.2(3914),ESM1(16107)	FP671120.4	./.	+/.	5:54961760	21:8214690	intergenic	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC073346.1(93989),AC073137.1(175370)	AP003390.1(4495),AP001994.1(77186)	./.	./.	7:113240319	11:119744118	intergenic	intergenic	translocation	0	0	0	5	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
GALNT2	CPNE7	+/.	+/.	1:230187482	16:89588012	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143641	ENSG00000178773	.	.	upstream	downstream	mismatches(1)	.	.	.
GCC2	LINC02616	+/.	+/.	2:108492236	4:37003289	intron	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135968	ENSG00000261761	.	.	upstream	upstream	mismatches(1)	.	.	.
CDH8	FP671120.4	-/.	+/.	16:61831043	21:8206403	intron	intron	translocation/3'-3'	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	FP236383.3	./.	+/.	8:17155256	21:8433637	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RARB	FP671120.4	+/.	+/.	3:25373702	21:8209833	intron	intron	translocation	0	0	0	1	48	low	.	.	.	.	.	ENSG00000077092	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC079193.1(4368),ZDHHC2(1226)	FP671120.4	./.	+/.	8:17155256	21:8206403	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
CPNE4	LAPTM4B	-/.	+/.	3:131956179	8:97819575	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000196353	ENSG00000104341	.	.	upstream	upstream	mismatches(1)	.	.	.
AC004540.1	AC004540.1	+/.	+/.	7:26469899	7:26469914	intron	intron	duplication/ITD	0	0	0	18	12	low	.	.	.	.	.	ENSG00000214870	ENSG00000214870	.	.	upstream	downstream	duplicates(3),low_entropy(3)	.	.	.
AC010967.1(152956),AC069157.2(356039)	MARCO(55840),C1QL2(105743)	./.	./.	2:53114408	2:119050500	intergenic	intergenic	inversion	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TESC	CDH8	-/.	-/.	12:117069054	16:61831042	intron	intron	translocation/3'-3'	0	0	0	0	57	low	.	.	.	.	.	ENSG00000088992	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
CDH8	LINC01987(117073),LINC01973(31698)	-/.	./.	16:61831042	17:77845632	intron	intergenic	translocation	0	0	0	57	0	low	.	.	.	.	.	ENSG00000150394	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GDNF-AS1	CCNY	+/.	+/.	5:37928445	10:35568991	intron	intron	translocation/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000248587	ENSG00000108100	.	.	downstream	downstream	mismatches(1)	.	.	.
DAB1	ADAMTS20	-/.	-/.	1:58382570	12:43427399	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173406	ENSG00000173157	.	.	upstream	downstream	mismatches(1)	.	.	.
AC005833.1	AC005833.1	+/.	+/.	12:4702127	12:4702200	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255639	ENSG00000255639	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
NPSR1-AS1	ADAMTS20	-/.	-/.	7:34386427	12:43427401	intron	CDS	translocation/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000197085	ENSG00000173157	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479908	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
LSAMP	LSAMP	-/.	-/.	3:116642649	3:116642660	intron	intron	duplication/ITD	0	0	0	10	0	low	.	.	.	.	.	ENSG00000185565	ENSG00000185565	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC008696.2	RALYL	+/.	+/.	5:143608604	8:84504935	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000249881	ENSG00000184672	.	.	downstream	downstream	mismatches(1)	.	.	.
ZNF442	FP236383.3	-/.	+/.	19:12353540	21:8399813	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000198342	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092343	11:88092442	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
DACT2(25892),AL138918.1(29028)	AC084759.3(20),AC084759.2(31977)	./.	./.	6:168345669	15:53914732	intergenic	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),mismatches(6)	.	.	.
CHAT	C11orf53	+/.	+/.	10:49663819	11:111249043	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000070748	ENSG00000150750	.	.	upstream	upstream	mismatches(1)	.	.	.
GRM1	5_8S_rRNA(1687),FP236383.3(122023)	+/.	./.	6:146255322	21:8258620	intron	intergenic	translocation	0	0	0	0	543	low	.	.	.	.	.	ENSG00000152822	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LETM1	DLGAP2	-/.	+/.	4:1841520	8:1089848	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168924	ENSG00000198010	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
ST3GAL5(13880),AC012511.2(15456)	LETM1	./.	-/.	2:85919079	4:1841520	intergenic	CDS	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000168924	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC104777.1	AC118758.2	-/.	-/.	2:150617538	7:56825292	intron	exon	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000279072	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(1694),FP236383.3(122016)	MT-RNR2	./.	+/.	21:8258627	MT:2448	intergenic	exon	translocation	0	0	0	44	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
RUFY4(18122),CXCR2(16586)	GSE1	./.	+/.	2:218108703	16:85260119	intergenic	intron	translocation	0	0	0	193	19	low	.	.	.	.	.	.	ENSG00000131149	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SEMA3A	LINC02284	-/.	+/.	7:84018589	14:56324832	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000075213	ENSG00000259719	.	.	upstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	AC092275.1	./.	+/.	2:218108703	16:85260119	intergenic	intron	translocation	0	0	0	193	19	low	.	.	.	.	.	.	ENSG00000287787	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1376882	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
KCNAB2	AC022826.2	+/.	-/.	1:6071890	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000258677	.	.	downstream	upstream	mismatches(1)	.	.	.
KCNAB2	UBE2W	+/.	-/.	1:6071890	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000104343	.	.	downstream	upstream	mismatches(1)	.	.	.
Z98949.2	UBE2D3	-/-	-/-	22:25959237	4:102811283	exon	exon	translocation	0	0	0	2	4	low	.	.	|Ubiquitin-conjugating_enzyme(94%)	.	.	ENSG00000232464	ENSG00000109332	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNAB2	UBE2W	+/.	-/.	1:6071909	8:73820102	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000069424	ENSG00000104343	.	.	downstream	upstream	mismatches(1)	.	.	.
GPR39	AC123777.1	+/.	-/.	2:132557876	8:12794050	intron	intron	translocation	0	0	0	10	1	low	.	.	.	.	.	ENSG00000183840	ENSG00000254813	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022826.2	GLIS3	-/.	-/.	8:73820101	9:4073685	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000107249	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01293(15900),POLE4(73)	AC022826.2	./.	-/.	2:74958570	8:73820102	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000258677	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01031	SBNO2	+/.	-/.	1:193358242	19:1108318	intron	CDS	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000232077	ENSG00000064932	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45463100	15:45463184	intron	intron	duplication/ITD	0	0	0	0	37	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC022826.2	RPL23AP68(344783),AC079598.4(231355)	-/.	./.	8:73820102	12:87515212	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LRP1B	UNC79	-/.	+/.	2:141001141	14:93491666	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000168702	ENSG00000133958	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HYDIN2	AC015908.7(134578),AC015908.2(134578),RN7SL601P(141982)	+/.	./.	1:146725666	17:11015473	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000276975	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
UBE2W	RPL23AP68(344783),AC079598.4(231355)	-/.	./.	8:73820102	12:87515212	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HELQ(45),MRPS18C(32)	AC009161.1(206459),AC009110.1(32167)	./.	./.	4:83455900	16:62564205	intergenic	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HELQ(45),MRPS18C(32)	UBE2W	./.	-/.	4:83455900	8:73820103	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104343	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBBP11(353349),RAP1BP2(78778)	ABCD1	./.	+/.	3:103984261	X:153725239	intergenic	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101986	.	.	upstream	upstream	mismatches(1)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	AC090227.3(20175),ACAA2(19926)	./.	./.	3:103984260	18:49762238	intergenic	intergenic	translocation	0	0	0	83	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.3(3895),FP671120.7(548)	+/.	./.	21:8214789	21:8254044	intron	intergenic	inversion	0	0	0	5263	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	upstream	duplicates(2)	.	.	.
AC079943.2	FP671120.4	-/.	+/.	3:158007165	21:8209905	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242536	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(2)	.	.	.
LINC01293(15900),POLE4(73)	TUBBP11(353348),RAP1BP2(78779)	./.	./.	2:74958570	3:103984260	intergenic	intergenic	translocation	0	0	0	0	83	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SERTAD4	KRT19P4(10028),PBLD(11133)	+/.	./.	1:210234287	10:68271527	intron	intergenic	translocation	0	0	0	2	20	low	.	.	.	.	.	ENSG00000082497	.	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
TUBBP11(353348),RAP1BP2(78779)	RPL23AP68(344783),AC079598.4(231355)	./.	./.	3:103984260	12:87515212	intergenic	intergenic	translocation	0	0	0	83	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SREBF2-AS1	ACACA	-/-	-/-	22:41833576	17:37146745	exon	intron	translocation	0	0	0	0	9	low	.	.	|Carboxyl_transferase_domain(66%)	.	.	ENSG00000184068	ENSG00000278540	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ASAH2	AC008014.1	-/.	+/.	10:50267108	12:46639336	intron	intron	translocation/3'-3'	0	0	0	0	32	low	.	.	.	.	.	ENSG00000188611	ENSG00000257261	.	.	downstream	upstream	mismatches(1)	.	.	.
AC022826.2	ZNF329	-/.	-/.	8:73820101	19:58130295	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000181894	.	.	upstream	upstream	mismatches(1)	.	.	.
HELQ(45),MRPS18C(32)	AP002961.1	./.	-/.	4:83455900	11:103278165	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000285878	.	.	downstream	downstream	mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749069	intron	intron	translocation/5'-5'	0	0	0	0	290	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(3)	.	.	.
TTLL3	HAS1	+/+	-/-	3:9809808	19:51713853	5'UTR	CDS	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000105509	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC022826.2	AC090227.3(20175),ACAA2(19926)	-/.	./.	8:73820102	18:49762238	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC068286.2	AC016642.1	-/.	-/.	2:14919275	5:58801228	intron	intron	translocation/3'-3'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000287291	ENSG00000248475	.	.	downstream	downstream	mismatches(1)	.	.	.
AC004687.2	5_8S_rRNA(619),FP236383.3(123091)	-/.	./.	17:58385559	21:8257552	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000285897	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC022826.2	ETV6	-/.	+/.	8:73820101	12:11666820	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000139083	.	.	upstream	upstream	mismatches(1)	.	.	.
RNF43	5_8S_rRNA(619),FP236383.3(123091)	-/.	./.	17:58385559	21:8257552	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000108375	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
UBE2W	ETV6	-/.	+/.	8:73820101	12:11666820	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000139083	.	.	upstream	upstream	mismatches(1)	.	.	.
UBE3C(2772),AC004975.2(9394)	FBXO31	./.	-/.	7:157272142	16:87334751	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000103264	.	.	downstream	downstream	mismatches(1)	.	.	.
AC090578.1	ZKSCAN2	+/.	-/.	8:88485094	16:25243202	intron	intron	translocation/5'-5'	0	0	0	5	0	low	.	.	.	.	.	ENSG00000253553	ENSG00000155592	.	.	downstream	upstream	mismatches(1)	.	.	.
AC090578.1	C15orf61(10798),AC016355.1(128)	+/.	./.	8:88485094	15:67540944	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000253553	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	AP003390.1(4503),AP001994.1(77178)	-/.	./.	6:42262463	11:119744126	intron	intergenic	translocation	0	0	0	2363	3002	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	downstream	duplicates	.	.	.
SEMA3D(156673),DYNLL1P7(37590)	KMT2C	./.	-/.	7:85343528	7:152384548	intergenic	intron	inversion	0	0	0	64	177	low	.	.	.	.	.	.	ENSG00000055609	.	.	upstream	upstream	mismatches	.	.	.
TP73	AL138694.1(29410),HCFC2P1(2500)	+/.	./.	1:3723875	13:108477726	intron	intergenic	translocation	0	0	0	2	1	low	.	.	.	.	.	ENSG00000078900	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MAPK8IP3	DSCAM	+/.	-/.	16:1764164	21:40497181	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138834	ENSG00000171587	.	.	upstream	downstream	mismatches(1)	.	.	.
LPIN1	UBE3C(2773),AC004975.2(9393)	+/.	./.	2:11749346	7:157272143	intron	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000134324	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SMYD2	AC133555.6(4890),CA5AP1(178)	+/.	./.	1:214335680	16:29618607	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143499	.	.	.	downstream	upstream	mismatches(1)	.	.	.
Y_RNA(92916),RNA5SP103(1238)	NEDD9	./.	-/.	2:128443843	6:11350824	intergenic	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000111859	.	.	downstream	upstream	mismatches(1)	.	.	.
UBE3C(2773),AC004975.2(9393)	ALG9	./.	-/.	7:157272143	11:111871461	intergenic	CDS	translocation	0	0	0	7	0	low	.	.	.	.	.	.	ENSG00000086848	.	.	downstream	downstream	mismatches(1)	.	.	.
IL20RB(263261),RNA5SP142(243788)	CLCN5	./.	+/.	3:137274346	X:50007380	intergenic	intron	translocation	0	0	0	71	4	low	.	.	.	.	.	.	ENSG00000171365	.	.	upstream	upstream	mismatches	.	.	.
UBE3C(2773),AC004975.2(9393)	CDH26(20039),C20orf197(1803)	./.	./.	7:157272143	20:60054050	intergenic	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC090578.1	AC133555.6(4890),CA5AP1(178)	+/.	./.	8:88485094	16:29618607	intron	intergenic	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000253553	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SMYD2	EGFR	+/.	+/.	1:214335680	7:55206288	intron	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000143499	ENSG00000146648	.	.	downstream	upstream	mismatches(1)	.	.	.
ACSL3	AC106886.2	+/.	+/.	2:222872803	16:30749060	intron	intron	translocation/5'-5'	0	0	0	0	283	low	.	.	.	.	.	ENSG00000123983	ENSG00000260899	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SMYD2	RNU6-81P(11763),PPP1R2P10(15347)	+/.	./.	1:214335680	13:63795667	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000143499	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP001652.1	5_8S_rRNA(2080),FP236383.3(121630)	-/.	./.	11:58919736	21:8259013	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000255523	.	.	.	upstream	upstream	duplicates(4),mismatches(4)	.	.	.
GCLM	BTBD3(59318),AL109838.1(257381)	-/.	./.	1:93899684	20:11985927	intron	intergenic	translocation	0	0	0	3	17	low	.	.	.	.	.	ENSG00000023909	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GCLM	LINC01982	-/.	+/.	1:93899685	17:52444684	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000023909	ENSG00000263317	.	.	downstream	upstream	mismatches(1)	.	.	.
GPR55	PFN2	-/.	-/.	2:230948894	3:149984027	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000135898	ENSG00000070087	.	.	upstream	downstream	mismatches(1)	.	.	.
AC026887.1(20638),USP6NL(34516)	BTBD3(59318),AL109838.1(257381)	./.	./.	10:11419430	20:11985927	intergenic	intergenic	translocation	0	0	0	0	17	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC002463.1	FP236383.3	+/.	+/.	7:112751479	21:8400368	intron	intron	translocation/3'-3'	0	0	0	39	0	low	.	.	.	.	.	ENSG00000223646	ENSG00000280441	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
DDB2	LINC02550	+/.	-/.	11:47233105	11:111099120	intron	intron	inversion	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000271584	.	.	downstream	downstream	duplicates(1)	.	.	.
AC093894.2	OR4A18P(1093),OR4A19P(741)	-/.	./.	2:101557954	11:49919571	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286101	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DUBR	INPP4B	+/.	-/.	3:107264662	4:142713193	intron	intron	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000243701	ENSG00000109452	.	.	downstream	downstream	mismatches(1)	.	.	.
NDUFC1	AHR	-/.	+/.	4:139295702	7:17102798	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000106546	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093894.2	ANKFY1	-/.	-/.	2:101557954	17:4241636	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000286101	ENSG00000185722	.	.	upstream	downstream	mismatches(1)	.	.	.
SOBP	AP003071.5	+/.	+/.	6:107646188	11:69085364	intron	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000112320	ENSG00000287725	.	.	downstream	downstream	mismatches(1)	.	.	.
ZSCAN30	SMUG1(12416),CBX5(29518)	-/-	./-	18:35290169	12:54201424	5'UTR	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000186814	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MALRD1	BTBD3(59318),AL109838.1(257381)	+/.	./.	10:19281132	20:11985927	intron	intergenic	translocation	0	0	0	0	17	low	.	.	.	.	.	ENSG00000204740	.	.	.	downstream	downstream	mismatches(1)	.	.	.
Z98752.3	MT-RNR1	+/.	+/.	20:43556450	MT:1044	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000277611	ENSG00000211459	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
H3-3B	RAPH1(31953),AC125238.2(67289)	-/-	./-	17:75778988	2:203567288	exon	intergenic	translocation	0	0	0	0	0	low	.	.	Core_histone_H2A/H2B/H3/H4(32%)|	.	.	ENSG00000132475	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC128709.3(26250),LINC02012(11907)	MGMT	./.	+/.	3:197493355	10:129481948	intergenic	intron	translocation	0	0	0	4	4	low	.	.	.	.	.	.	ENSG00000170430	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
SLC41A2	AC013489.2(9290),LINC01586(7714)	-/.	./.	12:104952398	15:88577852	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000136052	.	.	.	upstream	upstream	mismatches(1)	.	.	.
UNC13C(125173),AC025272.1(298136)	FP671120.4	./.	+/.	15:54758587	21:8217544	intergenic	intron	translocation	0	0	0	0	25	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
RN7SKP247(8102),ADGRL2(45949)	FIRRE	./.	-/.	1:81260198	X:131708328	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000213468	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AC122683.1(65968),HMGN2P24(27671)	FP236383.3	./.	+/.	3:40671395	21:8444816	intergenic	intron	translocation	0	0	0	0	62	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
EIF3G	LINC00866	-/-	-/+	19:10115740	10:97837187	CDS/splice-site	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_G_(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(34%)|	.	.	ENSG00000130811	ENSG00000227356	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262505	6:42262604	intron	intron	duplication/ITD	0	0	0	2239	1284	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP005436.1	AP005436.1	-/.	-/.	11:88092345	11:88092443	intron	intron	duplication/ITD	0	0	0	1170	718	low	.	.	.	.	.	ENSG00000255102	ENSG00000255102	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
LINC02620	PAXBP1(159),C21orf62-AS1(149)	-/.	./.	10:104479799	21:32771951	intron	intergenic	translocation	0	0	0	1798	466	low	.	.	.	.	.	ENSG00000225768	.	.	.	upstream	downstream	low_entropy	.	.	.
AASDH	AC092266.1(135966),LSINCT5(314602)	-/.	./.	4:56373512	5:2397989	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000157426	.	.	.	upstream	downstream	mismatches(1)	.	.	.
IGSF21	DLG4	+/.	-/.	1:18369039	17:7190624	intron	3'UTR	translocation/3'-3'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000117154	ENSG00000132535	.	.	upstream	downstream	homopolymer(1)	.	.	.
MIR325HG	MIR325HG	-/.	-/.	X:76863244	X:76863257	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	.	.	.	ENSG00000280870	ENSG00000280870	.	.	upstream	downstream	low_entropy(1)	.	.	.
ERI3	SRSF9	-/.	-/.	1:44320098	12:120469338	intron	intron	translocation/3'-3'	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000111786	.	.	downstream	downstream	mismatches(1)	.	.	.
AC104777.1	IL3RA	-/.	+/.	2:150617538	X:1369424	intron	intron	translocation	0	0	0	45	0	low	.	.	.	.	.	ENSG00000232359	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
MLYCD	AC093627.22	+/+	-/+	16:83922179	7:117610	3'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	Malonyl-CoA_decarboxylase_C-terminal_domain(100%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|	.	.	ENSG00000103150	ENSG00000287883	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	4:152661319	4:152661342	intron	intron	duplication/ITD	0	0	0	15	15	low	.	.	.	.	.	ENSG00000170006	ENSG00000170006	.	.	upstream	downstream	low_entropy(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	NF2	./.	+/.	8:49417336	22:29691183	intergenic	intron	translocation	0	0	0	30	0	low	.	.	.	.	.	.	ENSG00000186575	.	.	upstream	downstream	mismatches(1)	.	.	.
AL118558.1	FP236383.3	-/.	+/.	14:102063231	21:8390945	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258959	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	4:152661275	4:152661342	intron	intron	duplication/ITD	0	0	0	16	15	low	.	.	.	.	.	ENSG00000170006	ENSG00000170006	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC005040.2(114491),LINC01789(143666)	SLIT3	./.	-/.	2:107111025	5:169243807	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000184347	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01121	LINC01121	-/.	-/.	2:45297823	2:45297884	intron	intron	duplication/ITD	0	0	0	10	10	low	.	.	.	.	.	ENSG00000205054	ENSG00000205054	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GLIS3	LINC00351(70064),AL356413.1(79303)	-/.	./.	9:4335330	13:85614634	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000107249	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TRPV5(342),LLCFC1(5255)	LINC00351(70063),AL356413.1(79304)	./.	./.	7:142934088	13:85614633	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ERI3	ANKRD6	-/.	+/.	1:44320094	6:89555917	intron	intron	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	ENSG00000135299	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093912.1(103815),AC073062.1(102175)	OTX2-AS1	./.	+/.	2:13435498	14:56911663	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000248550	.	.	downstream	downstream	mismatches(1)	.	.	.
AL356157.3(30449),AL356157.1(45338)	FP671120.4	./.	+/.	10:44545870	21:8214781	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.7(379),5_8S_rRNA(888)	FP671120.7(390),5_8S_rRNA(877)	./.	./.	21:8255893	21:8255904	intergenic	intergenic	duplication/ITD	0	0	0	143	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(29),low_entropy(1)	.	.	.
ATP2C1	DAOA-AS1	+/.	-/.	3:130939925	13:105504678	intron	intron	translocation/5'-5'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000017260	ENSG00000232307	.	.	downstream	upstream	mismatches(1)	.	.	.
GAU1	AC005833.1	-/.	+/.	12:4702157	12:4702167	intron	intron	duplication/5'-5'	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255639	.	.	upstream	downstream	low_entropy(1)	.	.	.
GAU1	GAU1	-/.	-/.	12:4702157	12:4702167	intron	intron	duplication/ITD	0	0	0	19	19	low	.	.	.	.	.	ENSG00000255474	ENSG00000255474	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC106795.1	ZNF462	+/.	+/.	5:177876243	9:106877178	intron	intron	translocation	0	0	0	68	3	low	.	.	.	.	.	ENSG00000170089	ENSG00000148143	.	.	downstream	upstream	duplicates(8),mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/.	+/.	21:8214790	21:8214816	intron	intron	duplication/ITD	0	0	0	5263	6035	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	upstream	downstream	duplicates(4),hairpin(2),low_entropy(1)	.	.	.
AL645474.1(220155),AL136372.2(78752)	PPP1R12A	./.	-/.	1:187934890	12:79875396	intergenic	intron	translocation	0	0	0	1	6	low	.	.	.	.	.	.	ENSG00000058272	.	.	downstream	upstream	mismatches(1)	.	.	.
MFSD1	MFSD1	+/.	+/.	3:158827892	3:158827985	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000118855	ENSG00000118855	.	.	upstream	downstream	low_entropy(1)	.	.	.
DYNC2H1	FP236383.3	+/.	+/.	11:103278165	21:8397439	intron	intron	translocation	0	0	0	12	543	low	.	.	.	.	.	ENSG00000187240	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.4(3813),FP671120.10(3895)	FP236383.3	./.	+/.	21:8231459	21:8444656	intergenic	intron	deletion/read-through	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.7(390),5_8S_rRNA(877)	FP236383.3	./.	+/.	21:8255904	21:8400424	intergenic	intron	deletion/read-through	0	0	0	74	4	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL138729.1(14773),RNU4-76P(47805)	AGBL1	./.	+/.	6:121494681	15:86676076	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000273540	.	.	upstream	downstream	mismatches(1)	.	.	.
FBXW8	SRSF9	+/.	-/.	12:116943579	12:120467373	intron	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000174989	ENSG00000111786	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8211698	21:8400424	intron	intron	deletion/read-through	0	0	0	0	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NTRK2	SLIT1	+/.	-/.	9:84975073	10:97043517	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000148053	ENSG00000187122	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.3(4334),FP671120.7(109)	MT-RNR2	./.	+/.	21:8254483	MT:2116	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AGRN	JAKMIP3	+/.	+/.	1:1041820	10:132106461	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000188385	.	.	downstream	downstream	mismatches(1)	.	.	.
AGRN	JAKMIP3	+/.	+/.	1:1041726	10:132106461	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000188385	.	.	downstream	downstream	mismatches(1)	.	.	.
AGRN	IGHD	+/.	-/.	1:1041773	14:105837605	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000211898	.	.	downstream	upstream	mismatches(1)	.	.	.
GNA13	GNA13	-/.	-/.	17:65031867	17:65031880	intron	intron	duplication/ITD	0	0	0	0	0	low	.	.	.	.	.	ENSG00000120063	ENSG00000120063	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
AGRN	IGHD	+/.	-/.	1:1041726	14:105837605	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000211898	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02062	NTRK2	+/.	+/.	5:98929379	9:84975073	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248489	ENSG00000148053	.	.	upstream	upstream	mismatches(1)	.	.	.
AGRN	LINC02062	+/.	+/.	1:1041820	5:98929379	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000248489	.	.	downstream	upstream	mismatches(1)	.	.	.
AC105252.1(292284),AC079380.1(3754)	GRK1	./.	+/.	4:133867492	13:113731116	intergenic	intron	translocation	0	0	0	11	0	low	.	.	.	.	.	.	ENSG00000185974	.	.	upstream	upstream	mismatches(1)	.	.	.
AGRN	AL357075.4	+/.	-/.	1:1041820	6:154494759	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000288520	.	.	downstream	downstream	mismatches(1)	.	.	.
AGRN	CNKSR3	+/.	-/.	1:1041820	6:154494759	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000153721	.	.	downstream	downstream	mismatches(1)	.	.	.
COL26A1	CFTR	+/.	+/.	7:101499122	7:117448926	intron	intron	deletion	0	0	0	3	0	low	.	.	.	.	.	ENSG00000160963	ENSG00000001626	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02055	AC064801.2	+/.	+/.	8:136736782	18:62551948	intron	exon	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000254101	ENSG00000279236	.	.	upstream	upstream	mismatches(1)	.	.	.
AGRN	AL357075.4	+/.	-/.	1:1041773	6:154494759	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000288520	.	.	downstream	downstream	mismatches(1)	.	.	.
AGRN	CNKSR3	+/.	-/.	1:1041773	6:154494759	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000153721	.	.	downstream	downstream	mismatches(1)	.	.	.
AGRN	AL357075.4	+/.	-/.	1:1041726	6:154494759	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000288520	.	.	downstream	downstream	mismatches(1)	.	.	.
AGRN	SLIT1	+/.	-/.	1:1041726	10:97043517	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000187122	.	.	downstream	upstream	mismatches(1)	.	.	.
AGRN	EPB41L1	+/.	+/.	1:1041773	20:36154970	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000088367	.	.	downstream	upstream	mismatches(1)	.	.	.
AGRN	EPB41L1	+/.	+/.	1:1041726	20:36154970	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000088367	.	.	downstream	upstream	mismatches(1)	.	.	.
AGRN	AL121895.1	+/.	-/.	1:1041726	20:36154970	intron	intron	translocation/5'-5'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000188157	ENSG00000232406	.	.	downstream	upstream	mismatches(1)	.	.	.
DMD	DMD	-/.	-/.	X:31187732	X:31187741	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000198947	ENSG00000198947	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP003059.2(10733),PRSS23(14859)	AP003059.2(10796),PRSS23(14796)	./.	./.	11:86776200	11:86776263	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
BNC2	BNC2	-/-	-/-	9:16412701	9:16412765	3'UTR	3'UTR	duplication/ITD	0	0	0	22	22	low	.	.	Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%)|	.	.	ENSG00000173068	ENSG00000173068	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
ZNF808	ZNF808	+/.	+/.	19:52561159	19:52561215	intron	intron	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	ENSG00000198482	ENSG00000198482	.	.	upstream	downstream	low_entropy(1)	.	.	.
ZNF701	ZNF808	+/.	+/.	19:52561159	19:52561215	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000167562	ENSG00000198482	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC004852.2(314378),GAPDHP68(110743)	AC004852.2(314441),GAPDHP68(110680)	./.	./.	7:9504235	7:9504298	intergenic	intergenic	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262483	6:42262491	intron	intron	duplication/ITD	0	0	0	2363	1953	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
TAS1R1	AC108037.1(159605),LINC02270(144152)	+/.	./.	1:6579310	4:12079293	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173662	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC090578.1	AC090578.1	+/.	+/.	8:88881403	8:88881450	intron	intron	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	ENSG00000253553	ENSG00000253553	.	.	upstream	downstream	low_entropy(2)	.	.	.
XPC	AC009161.1(206459),AC009110.1(32167)	-/.	./.	3:14178227	16:62564205	intron	intergenic	translocation	0	0	0	11	21	low	.	.	.	.	.	ENSG00000154767	.	.	.	downstream	downstream	mismatches(1)	.	.	.
RNF34	FP236383.3	+/.	+/.	12:121407133	21:8400593	intron	intron	translocation/3'-3'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000170633	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
DUX4L29	PGLYRP1	+/+	-/+	10:133741105	19:46022055	exon	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000237635	ENSG00000008438	.	.	downstream	upstream	mismatches(1)	.	.	.
RASGEF1B	LRAT	-/.	+/.	4:81709846	4:154635483	intron	intron	duplication/5'-5'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000138670	ENSG00000121207	.	.	upstream	downstream	mismatches(2)	.	.	.
5_8S_rRNA(2093),FP236383.3(121617)	RUNX1	./.	-/.	21:8259026	21:34951104	intergenic	intron	duplication	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000159216	.	.	upstream	downstream	mismatches(1)	.	.	.
TMEM212-AS1	FBLN5	-/.	-/.	3:171840463	14:91915742	intron	intron	translocation	1	0	0	0	0	low	.	.	.	.	.	ENSG00000234717	ENSG00000140092	.	.	upstream	downstream	min_support	.	.	.
MYL10(432),CUX1(186176)	AC105180.2(10833),ZFAT(76468)	./.	./.	7:101629728	8:134401320	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ATG16L1(4014),SAG(8128)	AC115220.1	./.	+/.	2:233299688	7:64102903	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000285544	.	.	downstream	upstream	mismatches(1)	.	.	.
AC016687.3	FP236383.3	-/.	+/.	4:34005923	21:8401256	intron	intron	translocation/3'-3'	0	0	0	10	15	low	.	.	.	.	.	ENSG00000250954	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1(23086),AC108865.1(141161)	LINC01571(114625),C16orf97(102654)	./.	./.	4:186749808	16:51902833	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GUSBP12	ST6GALNAC1	-/.	-/.	7:57200848	17:76627806	exon	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	.	.	.	ENSG00000169325	ENSG00000070526	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2079),FP236383.3(121631)	AL008720.2(33562),Z72006.1(36701)	./.	./.	21:8259012	22:48366761	intergenic	intergenic	translocation	0	0	0	5911	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),homopolymer(1)	.	.	.
AF064860.1	AF064860.1	+/.	+/.	21:39679809	21:39679820	intron	intron	duplication/ITD	0	0	0	34	0	low	.	.	.	.	.	ENSG00000225330	ENSG00000225330	.	.	upstream	downstream	duplicates(3),low_entropy(1),merge_adjacent	.	.	.
AP003390.1(4403),AP001994.1(77278)	AP003390.1(4502),AP001994.1(77179)	./.	./.	11:119744026	11:119744125	intergenic	intergenic	duplication/ITD	0	0	0	3752	3002	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3)	.	.	.
C2orf83	C2orf83	-/.	-/.	2:227643250	2:227643291	intron	intron	duplication/ITD	0	0	0	32	32	low	.	.	.	.	.	ENSG00000042304	ENSG00000042304	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FRK	AL049749.1(9302),Z80897.2(23312)	-/.	./.	6:115975968	22:36730774	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000111816	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	SFMBT2	./.	-/.	1:148724716	10:7400841	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000198879	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	PHYHIP	./.	-/.	2:218108703	8:22231663	intergenic	intron	translocation	0	0	0	193	0	low	.	.	.	.	.	.	ENSG00000168490	.	.	downstream	downstream	homopolymer(1)	.	.	.
IGSF8(11903),ATP1A2(4913)	CLVS2(48774),TRDN(94640)	./.	./.	1:160110846	6:123121699	intergenic	intergenic	translocation	0	0	0	0	7	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ATP6V1C1(10770),MTND1P5(1830)	FP236383.3	./.	+/.	8:103083821	21:8438745	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ATP6V1C1(10770),MTND1P5(1830)	FP236383.3	./.	+/.	8:103083821	21:8394535	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
KMT2A	FP671120.4	+/.	+/.	11:118436772	21:8216626	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000118058	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
ATP6V1C1(10770),MTND1P5(1830)	FP671120.4	./.	+/.	8:103083821	21:8211500	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	AC091806.1	+/.	+/.	21:8397832	X:40289161	intron	intron	translocation	0	0	0	1126	10	low	.	.	.	.	.	ENSG00000280441	ENSG00000236393	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC021218.1(39526),Y_RNA(180253)	Z96074.1	./.	+/.	7:156005869	X:137750731	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000283692	.	.	upstream	downstream	mismatches(1)	.	.	.
NRIP3	AC022384.1	-/-	+/+	11:9003964	3:10249513	5'UTR	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000272410	.	.	upstream	upstream	duplicates(1),mismatches(4)	.	.	.
AC021218.1(39544),Y_RNA(180235)	SCUBE2	./.	-/.	7:156005887	11:9091828	intergenic	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	.	ENSG00000175356	.	.	downstream	upstream	mismatches(1)	.	.	.
AC073529.1	AC073529.1	-/.	-/.	X:11077760	X:11077769	intron	intron	duplication/ITD	0	0	0	26	5	low	.	.	.	.	.	ENSG00000234129	ENSG00000234129	.	.	upstream	downstream	low_entropy(1)	.	.	.
C11orf53	NLGN4Y	+/.	+/.	11:111249043	Y:14608720	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150750	ENSG00000165246	.	.	upstream	downstream	mismatches(1)	.	.	.
AL033529.1	AC092666.1	+/.	+/.	1:32507178	7:150046521	intron	intron	translocation/3'-3'	0	0	0	10	0	low	.	.	.	.	.	ENSG00000254553	ENSG00000241449	.	.	upstream	upstream	mismatches(1)	.	.	.
C11orf53	LINC01203(155415),EGFL6(11151)	+/.	./.	11:111249046	X:13558450	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150750	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4502),AP001994.1(77179)	GPC3	./.	-/.	11:119744125	X:133661640	intergenic	intron	translocation	0	0	0	3002	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	low_entropy	.	.	.
SLC35E4	FAT1(23081),AC108865.1(141166)	+/+	./+	22:30636548	4:186749803	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000100036	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDX11	AC027237.3	+/.	-/.	12:31095899	15:69399191	intron	intron	translocation/3'-3'	0	0	0	0	5	low	.	.	.	.	.	ENSG00000013573	ENSG00000259426	.	.	upstream	downstream	mismatches(1)	.	.	.
C11orf53	AGBL1	+/.	+/.	11:111249043	15:86804173	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150750	ENSG00000273540	.	.	upstream	upstream	mismatches(1)	.	.	.
STRN	C11orf53	-/.	+/.	2:36865887	11:111249043	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000115808	ENSG00000150750	.	.	upstream	upstream	mismatches(1)	.	.	.
AP005203.1	FP671120.4	-/.	+/.	18:4992677	21:8214788	intron	intron	translocation	0	0	0	5	5263	low	.	.	.	.	.	ENSG00000266268	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
AP003390.1(4504),AP001994.1(77177)	FXNP1(22675),NRXN3(87420)	./.	./.	11:119744127	14:78082953	intergenic	intergenic	translocation	0	0	0	3002	336	low	.	.	.	.	.	.	.	.	.	downstream	upstream	low_entropy	.	.	.
FANCI	CHRNA4	+/.	-/.	15:89311556	20:63354796	exon	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000140525	ENSG00000101204	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AL390778.2(33289),C9orf62(57252)	FP671120.4	./.	+/.	9:135285997	21:8214788	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP005203.1	5_8S_rRNA(2084),FP236383.3(121626)	-/.	./.	18:4992677	21:8259017	intron	intergenic	translocation	0	0	0	5	5911	low	.	.	.	.	.	ENSG00000266268	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
SLCO5A1	MT-RNR2	-/.	+/.	8:69690369	MT:2220	intron	exon	translocation/3'-3'	0	0	0	53	.	low	.	.	.	.	.	ENSG00000137571	ENSG00000210082	.	.	downstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
AL390778.2(33289),C9orf62(57252)	5_8S_rRNA(2084),FP236383.3(121626)	./.	./.	9:135285997	21:8259017	intergenic	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
SAMD3	STMN2(62168),AC016240.1(19025)	-/.	./.	6:130180680	8:79728326	intron	intergenic	translocation	0	0	0	38	0	low	.	.	.	.	.	ENSG00000164483	.	.	.	upstream	upstream	duplicates(1),mismatches(2)	.	.	.
AP005203.1	FP236383.3	-/.	+/.	18:4992677	21:8397822	intron	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	ENSG00000266268	ENSG00000280441	.	.	upstream	upstream	duplicates(1)	.	.	.
NRCAM	Z93403.1	-/.	+/.	7:108366497	X:42277880	intron	intron	translocation/3'-3'	0	0	0	1	31	low	.	.	.	.	.	ENSG00000091129	ENSG00000231772	.	.	downstream	upstream	mismatches(1)	.	.	.
DYNC2H1	Z93403.1	+/.	+/.	11:103278149	X:42277880	intron	intron	translocation/3'-3'	0	0	0	0	31	low	.	.	.	.	.	ENSG00000187240	ENSG00000231772	.	.	upstream	upstream	mismatches(1)	.	.	.
AP002961.1	Z93403.1	-/.	+/.	11:103278149	X:42277880	intron	intron	translocation	0	0	0	0	31	low	.	.	.	.	.	ENSG00000285878	ENSG00000231772	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012513.1	MIR4300HG	+/.	-/.	2:216263455	11:82143174	intron	intron	translocation/3'-3'	0	0	0	9	1095	low	.	.	.	.	.	ENSG00000231092	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479805	10:104479898	intron	intron	duplication/ITD	0	0	0	2200	2216	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
RPS24P8(33048),TMEM158(31243)	UBE2W	./.	-/.	3:45193223	8:73820121	intergenic	intron	translocation	0	0	0	0	164	low	.	.	.	.	.	.	ENSG00000104343	.	.	upstream	downstream	duplicates(2),mismatches(2)	.	.	.
TUBBP11(353365),RAP1BP2(78762)	Z93403.1	./.	+/.	3:103984277	X:42277880	intergenic	intron	translocation	0	0	0	81	31	low	.	.	.	.	.	.	ENSG00000231772	.	.	downstream	upstream	mismatches(1)	.	.	.
ANP32B	AP001977.1(22080),AP001924.1(28515)	+/.	./.	9:97983496	11:121951056	5'UTR	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000136938	.	.	.	upstream	downstream	mismatches(1)	.	.	.
C1orf21	HBB	+/.	-/.	1:184500899	11:5225537	intron	3'UTR	translocation/3'-3'	0	0	0	0	91	low	.	.	.	.	.	ENSG00000116667	ENSG00000244734	.	.	upstream	downstream	mismatches(1)	.	.	.
SLC2A9	PTPRN2(221),LINC01022(2585)	-/.	./.	4:9774828	7:158588044	intron	intergenic	translocation	0	0	0	15	0	low	.	.	.	.	.	ENSG00000109667	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS24P8(33048),TMEM158(31243)	GPATCH2L	./.	+/.	3:45193223	14:76217998	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000089916	.	.	upstream	downstream	mismatches(1)	.	.	.
SLIT1	ERN2	-/.	-/.	10:97179803	16:23702061	intron	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	ENSG00000187122	ENSG00000134398	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
ABR	FP236383.3	-/.	+/.	17:1124167	21:8397815	intron	intron	translocation	0	0	0	8	6042	low	.	.	.	.	.	ENSG00000159842	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
GCC2	EDIL3-DT(174244),PPIAP79(334803)	+/.	./.	2:108492237	5:84665009	intron	intergenic	translocation	0	0	0	17	0	low	.	.	.	.	.	ENSG00000135968	.	.	.	upstream	downstream	mismatches(2)	.	.	.
UBE2W	STK3	-/.	-/.	8:73820101	8:98939631	intron	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000104375	.	.	upstream	downstream	mismatches(1)	.	.	.
ABR	FP236383.3	-/.	+/.	17:1124167	21:8442045	intron	intron	translocation	0	0	0	8	5962	low	.	.	.	.	.	ENSG00000159842	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
NRIP3	AC022748.2	-/-	+/-	11:9003964	15:78672957	5'UTR	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	ENSG00000261303	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
AP001823.1(3432),ELMOD1(756)	AP001823.1(3531),ELMOD1(657)	./.	./.	11:107590335	11:107590434	intergenic	intergenic	duplication/ITD	0	0	0	1909	1778	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(3),merge_adjacent	.	.	.
AL606923.2	HAMP(6906),MAG(76)	-/.	./.	6:68449194	19:35292049	intron	intergenic	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000288088	.	.	.	downstream	upstream	duplicates(3),mismatches(1)	.	.	.
IGHVIII-38-1(830),IGHV4-39(2582)	IGHVIII-38-1(909),IGHV4-39(2503)	./.	./.	14:106419129	14:106419208	intergenic	intergenic	duplication/ITD	0	0	0	192	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP003390.1(4384),AP001994.1(77297)	AP003390.1(4393),AP001994.1(77288)	./.	./.	11:119744007	11:119744016	intergenic	intergenic	duplication/ITD	0	0	0	3458	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AP003390.1(4381),AP001994.1(77300)	AP003390.1(4390),AP001994.1(77291)	./.	./.	11:119744004	11:119744013	intergenic	intergenic	duplication/ITD	0	0	0	3458	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(5),low_entropy(5)	.	.	.
AC078980.1	LINC01893	+/.	+/.	3:109700822	18:76211221	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242029	ENSG00000264260	.	.	upstream	upstream	mismatches(1)	.	.	.
AP003390.1(4377),AP001994.1(77304)	AP003390.1(4386),AP001994.1(77295)	./.	./.	11:119744000	11:119744009	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC104041.1	AC023034.1	-/.	+/.	15:81683463	15:81683472	intron	intron	duplication/5'-5'	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259692	ENSG00000259594	.	.	upstream	downstream	duplicates(1)	.	.	.
ANAPC4(33399),AC133963.2(20620)	FP671120.4	./.	+/.	4:25451897	21:8211721	intergenic	intron	translocation	0	0	0	4	136	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches	.	.	.
LINC02235	AP003390.1(4495),AP001994.1(77186)	+/.	./.	8:81842439	11:119744118	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000254689	.	.	.	upstream	downstream	duplicates	.	.	.
HNRNPA1P65(4601),SOD3(12891)	AC025442.2(1103),SREK1(44931)	./.	./.	4:24777021	5:66095040	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4500),AP001994.1(77181)	AF064860.1	./.	+/.	11:119744123	21:39679803	intergenic	intron	translocation	0	0	0	3002	34	low	.	.	.	.	.	.	ENSG00000225330	.	.	downstream	upstream	low_entropy	.	.	.
NRXN3	NRXN3	+/.	+/.	14:79047163	14:79257414	intron	intron	duplication	0	0	0	0	16	low	.	.	.	.	.	ENSG00000021645	ENSG00000021645	.	.	upstream	downstream	mismatches(1)	.	.	.
AC093627.1	PPP6R3	-/.	+/.	7:76397	11:68530290	intron	intron	translocation/3'-3'	0	0	0	0	16	low	.	.	.	.	.	ENSG00000232325	ENSG00000110075	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
NEDD4L	CDH4	+/.	+/.	18:58389148	20:61463276	CDS	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000049759	ENSG00000179242	.	.	upstream	upstream	mismatches(1)	.	.	.
AC097487.1	AC073071.1	-/.	-/.	4:166421046	7:109529564	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249675	ENSG00000234273	.	.	downstream	upstream	mismatches(1)	.	.	.
CLIP3	NCOA7	-/-	+/-	19:36026157	6:125833102	CDS	intron	translocation/5'-5'	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	ENSG00000111912	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8399956	21:8442769	intron	intron	inversion/3'-3'	0	0	0	205	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CLIP3	KRT18P24(56381),AL512634.1(41425)	-/-	./-	19:36026157	9:79093949	CDS	intergenic	translocation	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	.	.	.	upstream	downstream	mismatches(1)	.	.	.
CLIP3	AC097491.1(130553),LARP1BP1(75680)	-/-	./-	19:36026157	4:63274434	CDS	intergenic	translocation	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	.	.	.	upstream	downstream	mismatches(1)	.	.	.
MACROD1	FP236383.3	-/.	+/.	11:64165542	21:8442081	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000133315	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
NDUFC1	MAPKAP1	-/.	-/.	4:139295700	9:125702963	intron	intron	translocation/5'-5'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000109390	ENSG00000119487	.	.	upstream	upstream	mismatches(1)	.	.	.
DCHS2	RBFOX1	-/.	+/.	4:154351661	16:6222320	intron	intron	translocation/3'-3'	0	0	0	2	22	low	.	.	.	.	.	ENSG00000197410	ENSG00000078328	.	.	downstream	upstream	mismatches(1)	.	.	.
CLIP3	AC074035.1(137919),MTND6P12(397427)	-/.	./.	19:36026173	X:4771491	CDS	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	ENSG00000105270	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	MIR4300HG	+/.	-/.	10:104396370	11:82143167	intron	intron	translocation/3'-3'	0	0	0	558	1095	low	.	.	.	.	.	ENSG00000120051	ENSG00000245832	.	.	upstream	downstream	low_entropy	.	.	.
AC044873.1(14236),AC091027.2(97721)	5_8S_rRNA(2630),DUX4L32(18948)	./.	./.	18:78810908	20:29299876	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DGKG(2376),LINC02020(74629)	CLIP3	./.	-/.	3:186364610	19:36026175	intergenic	CDS	translocation	0	0	0	0	23	low	.	.	.	.	.	.	ENSG00000105270	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK11A	AP000317.2	-/.	+/.	1:1709359	21:34109348	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000008128	ENSG00000272657	.	.	upstream	upstream	mismatches(1)	.	.	.
CLIP3	RNU4-43P(50354),AC025475.1(319140)	-/-	./-	19:36026157	5:26063379	CDS	intergenic	translocation	0	0	0	23	0	low	.	.	Ankyrin_repeats_(3_copies)(96%)|	.	.	ENSG00000105270	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC019257.8	OR5B10P(4166),AP000435.1(208)	+/.	./.	8:1809855	11:58353796	intron	intergenic	translocation	0	0	0	3	1	low	.	.	.	.	.	ENSG00000283239	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DLGAP2	FP671120.4	+/.	+/.	8:1089848	21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000198010	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
MTRNR2L12	HSPA13(44612),SAMSN1(57132)	-/-	./+	3:96618090	21:14428096	5'UTR	intergenic	translocation	0	0	0	80	4	low	.	.	.	.	.	ENSG00000269028	.	.	.	upstream	upstream	mismatches	.	.	.
LINC00841(80303),AL137026.2(198197)	SEC14L5	./.	+/.	10:44061405	16:4988032	intergenic	intron	translocation	0	0	0	0	18	low	.	.	.	.	.	.	ENSG00000103184	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
LINC01169(15213),SMAD6(1229)	KRT8P27(3758),GRPEL2P2(69547)	./.	./.	15:66701007	X:64628331	intergenic	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MT-RNR2	HSPA13(44612),SAMSN1(57132)	+/+	./+	MT:1816	21:14428096	exon	intergenic	translocation	0	0	0	.	4	low	.	.	.	.	.	ENSG00000210082	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
LINC01320	AC044784.1(207220),LINC00709(95145)	+/.	./.	2:33767473	10:9180688	intron	intergenic	translocation	0	0	0	81	4	low	.	.	.	.	.	ENSG00000228262	.	.	.	upstream	upstream	mismatches	.	.	.
NXF2(27560),AC235565.2(6113)	NXF2(27658),AC235565.2(6015)	./.	./.	X:102354282	X:102354380	intergenic	intergenic	duplication/ITD	0	0	0	55	75	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(1),merge_adjacent	.	.	.
DHFR	HSPA13(44612),SAMSN1(57132)	-/.	./.	5:80650902	21:14428096	intron	intergenic	translocation	0	0	0	30	4	low	.	.	.	.	.	ENSG00000228716	.	.	.	upstream	upstream	mismatches	.	.	.
LINC02163	AC007491.1(133741),CRNDE(53786)	+/.	./.	5:104383648	16:54791403	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000251026	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC099520.1	AC007491.1(133741),CRNDE(53786)	-/.	./.	5:104383648	16:54791403	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000251574	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TEDC1	FP236383.3	+/.	+/.	14:105494501	21:8397829	exon	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000185347	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	AP001599.1	+/.	+/.	21:8439284	21:26914103	intron	intron	duplication	0	0	0	0	167	low	.	.	.	.	.	ENSG00000280441	ENSG00000223563	.	.	upstream	downstream	duplicates(12),mismatches(2)	.	.	.
MGLL	CEACAM7	-/.	-/.	3:127976381	19:41687372	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000074416	ENSG00000007306	.	.	downstream	downstream	mismatches(1)	.	.	.
RNU6-393P(16786),TMEM130(34878)	AC025580.2	./.	+/.	7:98811610	15:45463184	intergenic	intron	translocation	0	0	0	1	37	low	.	.	.	.	.	.	ENSG00000259354	.	.	downstream	downstream	duplicates(1)	.	.	.
LINC00363(89873),AL354811.2(2824)	RNF212B	./.	+/.	13:93147799	14:23198768	intergenic	intron	translocation	0	0	0	0	12	low	.	.	.	.	.	.	ENSG00000215277	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	LINC02620	-/.	-/.	10:104479823	10:104479909	intron	intron	duplication/ITD	0	0	0	2231	1761	low	.	.	.	.	.	ENSG00000225768	ENSG00000225768	.	.	upstream	downstream	small_insert_size	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8442064	21:8442082	intron	intron	duplication/ITD	0	0	0	6	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	hairpin(1),merge_adjacent	.	.	.
DNAH14	AP001823.1(3432),ELMOD1(756)	+/.	./.	1:225078903	11:107590335	intron	intergenic	translocation	0	0	0	144	1909	low	.	.	.	.	.	ENSG00000185842	.	.	.	downstream	upstream	mismatches	.	.	.
MACROD1	FP671120.4	-/.	+/.	11:64165542	21:8214817	intron	intron	translocation	0	0	0	0	6035	low	.	.	.	.	.	ENSG00000133315	ENSG00000278996	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2096),FP236383.3(121614)	5_8S_rRNA(2114),FP236383.3(121596)	./.	./.	21:8259029	21:8259047	intergenic	intergenic	duplication/ITD	0	0	0	6	5911	low	.	.	.	.	.	.	.	.	.	upstream	downstream	hairpin(1),merge_adjacent	.	.	.
AC093765.2	FP671120.4	+/.	+/.	4:116876481	21:8214791	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000286637	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
MACROD1	5_8S_rRNA(2113),FP236383.3(121597)	-/.	./.	11:64165542	21:8259046	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000133315	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02620	IGHVIII-38-1(839),IGHV4-39(2573)	-/.	./.	10:104479892	14:106419138	intron	intergenic	translocation	0	0	0	2216	192	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	low_entropy	.	.	.
RN7SKP263(6593),AC123567.1(124437)	NPLOC4	./.	-/.	12:94015640	17:81626505	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000182446	.	.	downstream	upstream	mismatches(1)	.	.	.
AC126121.3	AL078602.1	+/.	+/.	3:59626658	6:164005371	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000243295	ENSG00000235538	.	.	upstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2096),FP236383.3(121614)	5_8S_rRNA(2113),FP236383.3(121597)	./.	./.	21:8259029	21:8259046	intergenic	intergenic	duplication/ITD	0	0	0	6	5911	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
IL6RP1(12014),AL161629.2(13661)	AC010320.4	./.	-/.	9:90094583	19:52335072	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000269535	.	.	upstream	downstream	mismatches(1)	.	.	.
HNRNPA3P8(76939),AC108740.1(147908)	5_8S_rRNA(2692),FP236383.3(121018)	./.	./.	3:80294173	21:8259625	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8397834	21:8397851	intron	intron	duplication/ITD	0	0	0	1126	6042	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916410	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
ADARB2	PCGF5	-/.	+/.	10:1293102	10:91163170	intron	intron	duplication/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000185736	ENSG00000180628	.	.	upstream	downstream	homopolymer(1)	.	.	.
MCTP1	ZNF462	-/.	+/.	5:94947578	9:106864044	intron	intron	translocation	0	0	0	15	38	low	.	.	.	.	.	ENSG00000175471	ENSG00000148143	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3(3817),FP236383.11(3711)	+/.	./.	21:8414078	21:8458609	intron	intergenic	deletion/read-through	0	0	0	48	30	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	read_through(1)	.	.	.
GULOP(4014),CLU(3830)	RBFOX3	./.	-/.	8:27593087	17:79342949	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000167281	.	.	downstream	upstream	homopolymer(1)	.	.	.
RBFOX3	AC233701.1(6458),MIR4739(96797)	-/.	./.	17:79342949	17:79610379	intron	intergenic	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000167281	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
KAZN	CDC20B(50),MCIDAS(46337)	+/.	./.	1:14493487	5:55173227	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000189337	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC078909.2(1322),Metazoa_SRP(105311)	AC078909.2(1331),Metazoa_SRP(105302)	./.	./.	15:37111306	15:37111315	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
AC093878.1(35588),AC097535.2(126280)	COL6A1	./.	+/.	4:33274258	21:45986696	intergenic	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	.	ENSG00000142156	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
HSD52	PTCHD1(232602),PRDX4(27286)	-/.	./.	1:59216833	X:23636976	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000224609	.	.	.	upstream	upstream	mismatches(1)	.	.	.
AC004540.1	CFAP58	+/.	+/.	7:26469984	10:104396370	intron	intron	translocation	0	0	0	20	558	low	.	.	.	.	.	ENSG00000214870	ENSG00000120051	.	.	downstream	upstream	low_entropy	.	.	.
RPL24P9(223684),AC074035.1(449955)	DCX(4726),RNU6-496P(4355)	./.	./.	X:4177245	X:111417155	intergenic	intergenic	inversion	0	0	0	22	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01397	KC6(31814),NPM1P1(125163)	+/.	./.	1:110093296	18:41663999	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000258673	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL022322.2	AC006288.1(256746),LINC01613(154182)	+/+	./+	22:38150241	9:119780871	exon	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000279080	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HTR1E(42954),AL138827.1(10523)	DDB2	./.	+/.	6:87059633	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	downstream	downstream	duplicates(1)	.	.	.
ERCC8	ADGRG1	-/.	+/.	5:60944731	16:57654404	intron	intron	translocation/3'-3'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000049167	ENSG00000205336	.	.	downstream	upstream	mismatches	.	.	.
FNDC3B	SMKR1(18216),AC078846.1(73414)	+/.	./.	3:172358952	7:129531134	intron	intergenic	translocation	0	0	0	141	68	low	.	.	.	.	.	ENSG00000075420	.	.	.	upstream	downstream	low_entropy	.	.	.
BOP1	FP671120.4	-/.	+/.	8:144273174	21:8207898	intron	intron	translocation/3'-3'	0	0	0	0	14	low	.	.	.	.	.	ENSG00000261236	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OTX1	DDB2	+/.	+/.	2:63051498	11:47233105	exon	intron	translocation	0	0	0	6	341	low	.	.	.	.	.	ENSG00000115507	ENSG00000134574	.	.	upstream	downstream	duplicates(1)	.	.	.
DDB2	FP671120.7(729),5_8S_rRNA(538)	+/.	./.	11:47233105	21:8256243	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	upstream	duplicates(1)	.	.	.
NRIP3	PRPF19P1(336840),CDH19(94596)	-/-	./+	11:9003964	18:66406487	5'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000175352	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
DDB2	IL3RA	+/.	+/.	11:47233105	X:1354864	intron	intron	translocation/5'-5'	0	0	0	341	18	low	.	.	.	.	.	ENSG00000134574	ENSG00000185291	.	.	downstream	downstream	duplicates(1)	.	.	.
PLCH2	FP236383.3	+/.	+/.	1:2451822	21:8397815	intron	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000149527	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
COLEC11	DDB2	+/.	+/.	2:3605526	11:47233105	intron	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000118004	ENSG00000134574	.	.	downstream	downstream	duplicates(1)	.	.	.
DDB2	MPP3(110),CD300LG(13868)	+/.	./.	11:47233105	17:43833280	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	duplicates(1)	.	.	.
AC007106.1	MTFR1P1(64623),AL592049.1(10946)	-/.	./.	4:27968752	X:66426399	intron	intergenic	translocation	0	0	0	0	48	low	.	.	.	.	.	ENSG00000251410	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MRGPRE	DDB2	-/.	+/.	11:3231584	11:47233105	intron	intron	inversion	0	0	0	0	341	low	.	.	.	.	.	ENSG00000184350	ENSG00000134574	.	.	downstream	downstream	duplicates(1)	.	.	.
IQCH-AS1	FP671120.4	-/.	+/.	15:67310424	21:8206534	intron	intron	translocation	0	0	0	40	9	low	.	.	.	.	.	ENSG00000259673	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
OASL	PTPRM	-/.	+/.	12:121034891	18:7603917	intron	intron	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000135114	ENSG00000173482	.	.	downstream	upstream	mismatches(1)	.	.	.
DPY19L4P2(60646),AC006007.1(30216)	NOS1	./.	-/.	7:145645463	12:117377365	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000089250	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
CSMD2	FP236383.3	-/.	+/.	1:33894234	21:8397834	intron	intron	translocation/3'-3'	0	0	0	2	1126	low	.	.	.	.	.	ENSG00000121904	ENSG00000280441	.	.	downstream	upstream	duplicates(2),homopolymer(2)	.	.	.
NOS1	MPP1	-/.	-/.	12:117377365	X:154779169	intron	3'UTR	translocation/3'-3'	0	0	0	6	0	low	.	.	.	.	.	ENSG00000089250	ENSG00000130830	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL356131.1(332830),MTRNR2L9(187)	FP671120.4	./.	+/.	6:61574141	21:8214313	intergenic	intron	translocation	0	0	0	65	0	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45462075	15:45462165	intron	intron	duplication/ITD	0	0	0	0	26	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
PDS5A	ZNF707	-/.	+/.	4:39875782	8:143684558	intron	exon	translocation/3'-3'	0	0	0	11	4	low	.	.	.	.	.	ENSG00000121892	ENSG00000181135	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MSL3	CDH8	+/+	-/-	X:11758170	16:61831043	5'UTR	intron	translocation	0	0	0	0	57	low	.	.	|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(71%)	.	.	ENSG00000005302	ENSG00000150394	.	.	downstream	downstream	mismatches(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45462690	15:45462788	intron	intron	duplication/ITD	0	0	0	0	7	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(5),low_entropy(1)	.	.	.
U3(104497),GPC1(41723)	FARS2	./.	+/.	2:240393940	6:5782068	intergenic	intron	translocation	0	0	0	357	9	low	.	.	.	.	.	.	ENSG00000145982	.	.	upstream	downstream	mismatches(3)	.	.	.
AC092660.1(102364),AC092604.1(178943)	AC044893.1(92009),RN7SKP294(9027)	./.	./.	2:78701770	8:49321183	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RTN4RL1	RUFY4(18122),CXCR2(16586)	-/-	./-	17:1934814	2:218108703	3'UTR	intergenic	translocation	0	0	0	0	193	low	.	.	Leucine_rich_repeat(100%)|	.	.	ENSG00000185924	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
AC025580.2	AC025580.2	+/.	+/.	15:45462496	15:45462594	intron	intron	duplication/ITD	0	0	0	56	23	low	.	.	.	.	.	ENSG00000259354	ENSG00000259354	.	.	upstream	downstream	duplicates(7),low_entropy(2)	.	.	.
AL606753.2(143117),LINC01735(192780)	ZNF462	./.	+/.	1:208413784	9:106877174	intergenic	intron	translocation	0	0	0	68	3	low	.	.	.	.	.	.	ENSG00000148143	.	.	downstream	upstream	duplicates(1)	.	.	.
SLC16A11	FP236383.3	-/-	+/+	17:7042732	21:8411575	CDS	intron	translocation	0	0	0	0	3	low	.	.	Major_Facilitator_Superfamily(30%)|	.	.	ENSG00000174326	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC012060.1(92676),LINC02248(36443)	TM9SF4	./.	+/.	15:26358594	20:32160147	intergenic	intron	translocation	0	0	0	71	4	low	.	.	.	.	.	.	ENSG00000101337	.	.	downstream	downstream	mismatches(2)	.	.	.
AL606753.2(143093),LINC01735(192804)	AL606753.2(143117),LINC01735(192780)	./.	./.	1:208413760	1:208413784	intergenic	intergenic	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
ZNF462	MACROD2	+/.	+/.	9:106877174	20:15209112	intron	intron	translocation	0	0	0	3	68	low	.	.	.	.	.	ENSG00000148143	ENSG00000172264	.	.	upstream	downstream	duplicates(1)	.	.	.
LINC01608	FP565260.4	-/.	+/.	8:110977288	21:5012497	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000253877	ENSG00000279493	.	.	upstream	upstream	mismatches(1)	.	.	.
MACROD2	MACROD2	+/.	+/.	20:15209088	20:15209112	intron	intron	duplication/ITD	0	0	0	68	68	low	.	.	.	.	.	ENSG00000172264	ENSG00000172264	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785695	2:101785793	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
PAX5	LINC00443	-/.	+/.	9:37009556	13:106668853	intron	exon	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000196092	ENSG00000230156	.	.	upstream	upstream	mismatches(1)	.	.	.
NBPF7	AC005524.1(60138),MAN1A2P1(2897)	-/.	./.	1:119844203	19:28787915	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000215864	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PRICKLE2	FP671120.4	-/.	+/.	3:64188277	21:8214800	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000163637	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
PRKAR1A	PAX5	+/+	-/+	17:68530291	9:37009556	CDS	intron	translocation/5'-5'	0	0	0	0	5	low	.	.	Cyclic_nucleotide-binding_domain(80%),Regulatory_subunit_of_type_II_PKA_R-subunit(100%)|	.	.	ENSG00000108946	ENSG00000196092	.	.	downstream	upstream	mismatches(1)	.	.	.
LNCPRESS1(288),EMSLR(6636)	PAX5	./.	-/.	7:101301634	9:37009556	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000196092	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093159.2(61634),AC093159.1(50754)	LINC02620	./.	-/.	2:62412373	10:104479883	intergenic	intron	translocation	0	0	0	14	2216	low	.	.	.	.	.	.	ENSG00000225768	.	.	downstream	downstream	mismatches	.	.	.
MAP1LC3BP1(11866),SLC24A2(31062)	SBNO2	./.	-/.	9:19476390	19:1108540	intergenic	CDS	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000064932	.	.	downstream	downstream	mismatches(1)	.	.	.
LRRC4C	HMGA2	-/.	+/.	11:41021153	12:65824711	intron	5'UTR	translocation	0	0	0	632	79	low	.	.	.	.	.	ENSG00000148948	ENSG00000149948	.	.	upstream	upstream	low_entropy	.	.	.
BEND7	CAPN3	-/.	+/.	10:13505668	15:42408946	intron	exon	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000165626	ENSG00000092529	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00575	LRRC4C	-/.	-/.	4:82619935	11:41021153	intron	intron	translocation	0	0	0	19	632	low	.	.	.	.	.	ENSG00000231782	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
MCPH1-AS1	ASTN2	-/.	-/.	8:6678107	9:116737205	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000249898	ENSG00000148219	.	.	upstream	downstream	mismatches(1)	.	.	.
MED6P1(8630),AL353149.1(200676)	LRRC4C	./.	-/.	10:88058453	11:41021153	intergenic	intron	translocation	0	0	0	13	632	low	.	.	.	.	.	.	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
PLXNA4	LRRC4C	-/.	-/.	7:132189071	11:41021153	intron	intron	translocation	0	0	0	470	632	low	.	.	.	.	.	ENSG00000221866	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
RN7SL776P(55500),PHBP14(192168)	RN7SL776P(55581),PHBP14(192087)	./.	./.	4:167456262	4:167456343	intergenic	intergenic	duplication/ITD	0	0	0	2	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
RBBP4	RAB11FIP3	+/+	+/+	1:32651582	16:471999	5'UTR	intron	translocation	0	0	0	0	1	low	.	.	|FIP_domain_(100%)	.	.	ENSG00000162521	ENSG00000090565	.	.	downstream	upstream	mismatches(1)	.	.	.
MAB21L2	ZMIZ1	+/+	+/-	4:150582360	10:79103315	5'UTR	intron	translocation/5'-5'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000181541	ENSG00000108175	.	.	downstream	downstream	mismatches(1)	.	.	.
AC008269.1	UTRN	+/.	+/.	2:206862123	6:144823828	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000229321	ENSG00000152818	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
SLC45A1	ELFN2(6262),MFNG(35322)	+/.	./.	1:8329977	22:37433741	intron	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000162426	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FBXO41	A1CF	-/.	-/.	2:73281962	10:50848274	intron	intron	translocation/3'-3'	0	0	0	0	34	low	.	.	.	.	.	ENSG00000163013	ENSG00000148584	.	.	downstream	downstream	mismatches(1)	.	.	.
FPGT	A1CF	+/.	-/.	1:74229208	10:50848274	intron	intron	translocation/3'-3'	0	0	0	0	34	low	.	.	.	.	.	ENSG00000254685	ENSG00000148584	.	.	upstream	downstream	mismatches(1)	.	.	.
TCF7L2	TCF7L2	+/.	+/.	10:113117375	10:113117384	intron	intron	duplication/ITD	0	0	0	307	304	low	.	.	.	.	.	ENSG00000148737	ENSG00000148737	.	.	upstream	downstream	low_entropy(2)	.	.	.
A1CF	BCRP2	-/.	+/.	10:50848274	22:21107475	intron	intron	translocation/3'-3'	0	0	0	34	0	low	.	.	.	.	.	ENSG00000148584	ENSG00000169668	.	.	downstream	upstream	mismatches(1)	.	.	.
NEGR1	SOX21-AS1(58797),LINC00557(97814)	-/.	./.	1:72149567	13:94862227	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000172260	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02612	IL3RA	+/.	+/.	2:150617538	X:1374085	intron	intron	translocation/3'-3'	0	0	0	45	0	low	.	.	.	.	.	ENSG00000224048	ENSG00000185291	.	.	upstream	upstream	mismatches(1)	.	.	.
CCNT2-AS1	CCNT2-AS1	-/.	-/.	2:134845511	2:134845524	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000224043	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
IGHVIII-38-1(822),IGHV4-39(2590)	IGHVIII-38-1(903),IGHV4-39(2509)	./.	./.	14:106419121	14:106419202	intergenic	intergenic	duplication/ITD	0	0	0	192	191	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
LINC02506	RN7SKP104(56767),TAC1(76057)	+/.	./.	4:32012522	7:97656027	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000251129	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP002371.1(8127),AP003072.4(53697)	SPPL2B	./.	+/.	11:93080158	19:2338920	intergenic	intron	translocation	0	0	0	30	15	low	.	.	.	.	.	.	ENSG00000005206	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02629(156849),PARD3(34907)	LINC02761(89802),THAP12(44129)	./.	./.	10:34074653	11:76305827	intergenic	intergenic	translocation	0	0	0	14	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ACMSD	ACMSD	+/.	+/.	2:134845511	2:134845524	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000153086	.	.	upstream	downstream	duplicates(4),low_entropy(1),merge_adjacent	.	.	.
AL139383.1	5_8S_rRNA(1686),FP236383.3(122024)	-/.	./.	13:33517097	21:8258619	intron	intergenic	translocation	0	0	0	2	543	low	.	.	.	.	.	ENSG00000230490	.	.	.	downstream	upstream	mismatches(2)	.	.	.
AL449106.1	LINC01138	-/-	-/-	1:178725055	1:148351992	exon	intron	deletion	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	ENSG00000274020	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8392866	21:8442054	intron	intron	inversion/3'-3'	0	0	0	43	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(6),mismatches(2)	.	.	.
GCNT1	FP236383.3	+/.	+/.	9:76571859	21:8400368	intron	intron	translocation/3'-3'	0	0	0	38	0	low	.	.	.	.	.	ENSG00000187210	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR4456(18770),AC106772.1(47968)	GCNT1	./.	+/.	5:554652	9:76571859	intergenic	intron	translocation	0	0	0	0	38	low	.	.	.	.	.	.	ENSG00000187210	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
MIR4456(18642),AC106772.1(48096)	GCNT1	./.	+/.	5:554524	9:76571859	intergenic	intron	translocation	0	0	0	0	38	low	.	.	.	.	.	.	ENSG00000187210	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GCNT1	AC090502.3	+/.	+/.	9:76571859	12:74170991	intron	exon	translocation/3'-3'	0	0	0	38	0	low	.	.	.	.	.	ENSG00000187210	ENSG00000258320	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC01304(89118),AC012445.1(73402)	LINC01304(89167),AC012445.1(73353)	./.	./.	2:4063242	2:4063291	intergenic	intergenic	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP2B1	AP2B1	+/.	+/.	17:35583511	17:35583555	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000006125	ENSG00000006125	.	.	upstream	downstream	low_entropy(1)	.	.	.
PPEF1	PPEF1	+/.	+/.	X:18821754	X:18821804	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000086717	ENSG00000086717	.	.	upstream	downstream	low_entropy(1)	.	.	.
BRPF3	TRPC4AP	+/.	-/.	6:36197952	20:35084335	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000096070	ENSG00000100991	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
GCNT1	LCN15	+/.	-/.	9:76571859	9:136763302	intron	intron	duplication/3'-3'	0	0	0	38	0	low	.	.	.	.	.	ENSG00000187210	ENSG00000177984	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
HNRNPA1P65(4603),SOD3(12889)	C10orf143	./.	-/.	4:24777023	10:130087458	intergenic	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	.	ENSG00000237489	.	.	downstream	downstream	mismatches(1)	.	.	.
GCNT1	FP671120.4	+/.	+/.	9:76571859	21:8214403	intron	intron	translocation/3'-3'	0	0	0	38	8	low	.	.	.	.	.	ENSG00000187210	ENSG00000278996	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
THOC3	AC025580.2	-/.	+/.	5:175967559	15:45462154	intron	intron	translocation/5'-5'	0	0	0	67	28	low	.	.	.	.	.	ENSG00000051596	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
GCNT1	FP236383.3	+/.	+/.	9:76571859	21:8397441	intron	intron	translocation/3'-3'	0	0	0	38	0	low	.	.	.	.	.	ENSG00000187210	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC02123(10555),AC027343.1(3753)	ZDHHC9(7195),AL034405.1(17960)	./.	./.	5:7359226	X:129851104	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TMEM154	TMEM154	-/.	-/.	4:152661293	4:152661302	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000170006	ENSG00000170006	.	.	upstream	downstream	low_entropy(2)	.	.	.
LRRFIP1	AC025580.2	+/.	+/.	2:237784949	15:45462227	intron	intron	translocation	0	0	0	67	29	low	.	.	.	.	.	ENSG00000124831	ENSG00000259354	.	.	upstream	downstream	duplicates(8),mismatches(1)	.	.	.
AP003390.1(4372),AP001994.1(77309)	AP003390.1(4381),AP001994.1(77300)	./.	./.	11:119743995	11:119744004	intergenic	intergenic	duplication/ITD	0	0	0	1583	475	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC027031.2(80998),OXR1(5576)	JADE3	./.	+/.	8:106353900	X:47020466	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000102221	.	.	downstream	upstream	mismatches(1)	.	.	.
FBXW5	LINC01897(19537),HMGN1P30(34823)	-/.	./.	9:136943086	18:57983971	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000159069	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NOS1AP	RNU6-1312P(86506),CRLF3P3(286792)	+/.	./.	1:162228984	2:83744348	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198929	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AP002791.1(271702),LINC02756(139328)	PRDM15	./.	-/.	11:91654991	21:41814574	intergenic	exon	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000141956	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
TAS1R1	ATL2	+/.	-/.	1:6579310	2:38299224	CDS	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173662	ENSG00000119787	.	.	upstream	downstream	mismatches(1)	.	.	.
JAK1	AC009997.1(47927),NEDD4(32228)	-/.	./.	1:64860341	15:55794694	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000162434	.	.	.	upstream	downstream	mismatches(1)	.	.	.
JAK1	HMCN1	-/.	+/.	1:64860342	1:186010335	intron	intron	duplication/5'-5'	0	0	0	0	7	low	.	.	.	.	.	ENSG00000162434	ENSG00000143341	.	.	upstream	downstream	mismatches(1)	.	.	.
SH3PXD2B	C12orf65	-/.	+/.	5:172340336	12:123233991	intron	intron	translocation/5'-5'	0	0	0	4	8	low	.	.	.	.	.	ENSG00000174705	ENSG00000130921	.	.	upstream	downstream	mismatches(1)	.	.	.
TAS1R1	JAK1	+/.	-/.	1:6579310	1:64860341	CDS	intron	inversion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173662	ENSG00000162434	.	.	upstream	upstream	mismatches(1)	.	.	.
NOS1AP	LINC02261(122976),IGBP1P5(179944)	+/.	./.	1:162228984	4:27405201	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198929	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916400	21:8210226	intron	intron	translocation/5'-5'	0	0	0	55	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	downstream	mismatches	.	.	.
LINC02261(122976),IGBP1P5(179944)	AC009997.1(47927),NEDD4(32228)	./.	./.	4:27405201	15:55794694	intergenic	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC010967.1(152956),AC069157.2(356039)	AC012158.1	./.	+/.	2:53114408	12:64297535	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000243024	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC008269.1	TUBBP11(353348),RAP1BP2(78779)	+/.	./.	2:206862123	3:103984260	intron	intergenic	translocation	0	0	0	0	83	low	.	.	.	.	.	ENSG00000229321	.	.	.	downstream	upstream	duplicates(9),mismatches(2)	.	.	.
PLS1	LINC02261(122977),IGBP1P5(179943)	+/.	./.	3:142644949	4:27405202	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000120756	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TEX261	BCL2(412),KDSR(7186)	-/.	./.	2:70994857	18:63320540	5'UTR	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000144043	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TAS1R1	LINC02261(122976),IGBP1P5(179944)	+/.	./.	1:6579310	4:27405201	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173662	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DYNC1I2	AC008035.1	+/+	+/+	2:171748182	12:46639336	3'UTR	intron	translocation	0	0	0	0	32	low	.	.	Cytoplasmic_dynein_1_intermediate_chain_2(100%),WD_domain__G-beta_repeat(100%)|	.	.	ENSG00000077380	ENSG00000272369	.	.	downstream	upstream	mismatches(1)	.	.	.
TAS1R1	AC110588.1(43311),FAM149B1P1(162159)	+/.	./.	1:6579310	15:96594828	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000173662	.	.	.	upstream	upstream	mismatches(1)	.	.	.
ARL2-SNX15	RBFOX1	+/.	+/.	11:65014891	16:6222319	intron	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000273003	ENSG00000078328	.	.	downstream	upstream	mismatches(1)	.	.	.
HMCN1	AL360175.1(7684),AL135908.1(58819)	+/.	./.	1:186010335	6:50528788	intron	intergenic	translocation	0	0	0	7	2	low	.	.	.	.	.	ENSG00000143341	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00607	AL360175.1(7687),AL135908.1(58816)	-/.	./.	2:215796354	6:50528791	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000235770	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/.	+/.	21:8437078	21:8442053	intron	intron	inversion/3'-3'	0	0	0	55	5962	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	duplicates(3),homopolymer(2)	.	.	.
RPL34P29(4462),AC007603.3(15171)	FANCA	./.	-/.	16:49939814	16:89777207	intergenic	intron	duplication	0	0	0	18	0	low	.	.	.	.	.	.	ENSG00000187741	.	.	upstream	downstream	mismatches(1)	.	.	.
TAS1R1	AL360175.1(7687),AL135908.1(58816)	+/.	./.	1:6579312	6:50528791	CDS	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000173662	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NOS1AP	ATL2	+/.	-/.	1:162228984	2:38299224	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000198929	ENSG00000119787	.	.	upstream	downstream	mismatches(1)	.	.	.
PRSS43P	ARHGEF7(5084),TEX29(5363)	-/.	./.	3:46755085	13:111310821	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000286651	.	.	.	downstream	downstream	mismatches(1)	.	.	.
MACIR(105304),AC010406.1(24977)	HIVEP2	./.	-/.	5:103383964	6:142946392	intergenic	intron	translocation	0	0	0	0	63	low	.	.	.	.	.	.	ENSG00000010818	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ATL2	PLS1	-/.	+/.	2:38299223	3:142644949	intron	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000119787	ENSG00000120756	.	.	downstream	downstream	mismatches(1)	.	.	.
GPR39	AC127526.3	+/.	-/.	2:132557875	11:3435242	intron	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000183840	ENSG00000284605	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093627.22	SFRP4	-/.	-/.	7:117609	7:37990758	intron	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000106483	.	.	upstream	downstream	mismatches(1)	.	.	.
MEGF6	TDRD1	-/.	+/.	1:3505496	10:114199292	CDS	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000162591	ENSG00000095627	.	.	downstream	upstream	mismatches(1)	.	.	.
ABLIM1	AC104009.1	-/.	-/.	10:114556236	11:22316339	intron	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000099204	ENSG00000254768	.	.	upstream	upstream	mismatches(1)	.	.	.
TDRD1	ARHGAP28	+/.	+/.	10:114199292	18:6861597	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000095627	ENSG00000088756	.	.	upstream	downstream	mismatches(1)	.	.	.
TDRD1	LINC01255	+/.	+/.	10:114199292	18:11515758	CDS	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000095627	ENSG00000267252	.	.	upstream	downstream	mismatches(1)	.	.	.
VPS54(6388),AC012368.2(60537)	TRERF1	./.	-/.	2:64025816	6:42262477	intergenic	intron	translocation	0	0	0	25	2363	low	.	.	.	.	.	.	ENSG00000124496	.	.	downstream	upstream	mismatches	.	.	.
AC109492.1	LINC01255	+/.	+/.	5:86980215	18:11515758	intron	intron	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000249061	ENSG00000267252	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.7	LINC01897(19535),HMGN1P30(34825)	-/-	./+	21:8254769	18:57983969	exon	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000281383	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GRIP1	ARHGAP28	-/.	+/.	12:66638182	18:6861597	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000155974	ENSG00000088756	.	.	downstream	downstream	mismatches(1)	.	.	.
CDK12	CDK12	+/.	+/.	17:39481627	17:39481704	intron	intron	duplication/ITD	0	0	0	34	34	low	.	.	.	.	.	ENSG00000167258	ENSG00000167258	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
GS1-24F4.2	MT-RNR2	+/.	+/.	8:6865805	MT:2211	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000245857	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
ERI3	GRM8(1068),PRELID3BP10(41459)	-/.	./.	1:44320094	7:127254161	intron	intergenic	translocation	0	0	0	67	0	low	.	.	.	.	.	ENSG00000117419	.	.	.	downstream	downstream	mismatches(1)	.	.	.
GRIP1	LINC01255	-/.	+/.	12:66638182	18:11515758	intron	intron	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000155974	ENSG00000267252	.	.	downstream	downstream	mismatches(1)	.	.	.
AC007091.1(48969),POLR1F(67886)	OCA2	./.	-/.	7:19627575	15:27821272	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104044	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNU6-412P(73643),RAC1P2(118845)	CD81-AS1	./.	-/.	4:46604985	11:2354930	intergenic	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	.	ENSG00000238184	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TBR1	ZNHIT2	+/+	-/-	2:161423441	11:65116957	CDS	CDS	translocation	0	0	0	2	0	low	.	.	T-box(100%),T-box_transcription_factor-associated(1%)|	.	.	ENSG00000136535	ENSG00000174276	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
TTYH3	FP236383.3	+/.	+/.	7:2660828	21:8444184	intron	intron	translocation	0	0	0	0	214	low	.	.	.	.	.	ENSG00000136295	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ICE1(197015),AC026736.1(1570)	OCA2	./.	-/.	5:5687235	15:27821287	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000104044	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ZMAT4	FP236383.3	-/.	+/.	8:40888775	21:8397826	intron	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000165061	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
ICE1(197015),AC026736.1(1570)	GMDS	./.	-/.	5:5687235	6:1788875	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000112699	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC010970.1	FP236383.3	-/-	+/+	Y:10197463	21:8397819	exon	intron	translocation	0	0	0	0	6042	low	.	.	.	.	.	ENSG00000225840	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ICE1(197015),AC026736.1(1570)	DST	./.	-/.	5:5687235	6:56861333	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000151914	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
MT-RNR2	AC044784.1(207220),LINC00709(95145)	+/+	./+	MT:1816	10:9180688	exon	intergenic	translocation	0	0	0	.	4	low	.	.	.	.	.	ENSG00000210082	.	.	.	downstream	upstream	uninteresting_contigs	.	.	.
DENND1A(67877),LHX2(3641)	OCA2	./.	-/.	9:123998029	15:27821272	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000104044	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AFAP1	MTHFD2L	-/.	+/.	4:7800475	4:74295913	CDS	intron	deletion/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000196526	ENSG00000163738	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CARM1P1	DENND1A(67876),LHX2(3642)	-/.	./.	9:2952703	9:123998028	intron	intergenic	deletion	0	0	0	0	0	low	.	.	.	.	.	ENSG00000227835	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
OGDH	DENND1A(67876),LHX2(3642)	+/.	./.	7:44619398	9:123998028	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000105953	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	MIR4300HG	+/.	-/.	10:104396370	11:82143183	intron	intron	translocation/3'-3'	0	0	0	558	681	low	.	.	.	.	.	ENSG00000120051	ENSG00000245832	.	.	upstream	downstream	mismatches	.	.	.
AP002791.1(271702),LINC02756(139328)	PRDM15	./.	-/.	11:91654991	21:41814809	intergenic	exon	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000141956	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC118650.1(11670),HSPA8P13(508527)	5_8S_rRNA(2081),FP236383.3(121629)	./.	./.	8:46040562	21:8259014	intergenic	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MTHFD2L	HLA-DOA	+/.	-/.	4:74295913	6:33007483	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000163738	ENSG00000204252	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AC093627.22	PRPF19P1(336840),CDH19(94596)	-/.	./.	7:117610	18:66406487	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
NOTCH2NLB(44937),RNU6-1171P(14663)	GCK	./.	-/.	1:148724716	7:44149936	intergenic	intron	translocation	0	0	0	4	7	low	.	.	.	.	.	.	ENSG00000106633	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	MT-RNR2	+/.	+/.	21:8444816	MT:2220	intron	exon	translocation/3'-3'	0	0	0	62	.	low	.	.	.	.	.	ENSG00000280441	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
RUFY4(18122),CXCR2(16586)	GCK	./.	-/.	2:218108703	7:44149940	intergenic	intron	translocation	0	0	0	193	7	low	.	.	.	.	.	.	ENSG00000106633	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
PODXL(53501),EEF1B2P6(50234)	MUC5B	./.	+/.	7:131611718	11:1236372	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000117983	.	.	upstream	downstream	mismatches(1)	.	.	.
FXNP1(22696),NRXN3(87399)	FXNP1(22705),NRXN3(87390)	./.	./.	14:78082974	14:78082983	intergenic	intergenic	duplication/ITD	0	0	0	424	336	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(3)	.	.	.
MAP4K4	MAP4K4	+/.	+/.	2:101785696	2:101785794	intron	intron	duplication/ITD	0	0	0	496	411	low	.	.	.	.	.	ENSG00000071054	ENSG00000071054	.	.	upstream	downstream	low_entropy(2),merge_adjacent	.	.	.
CDK12	CDK12	+/.	+/.	17:39481626	17:39481713	intron	intron	duplication/ITD	0	0	0	34	34	low	.	.	.	.	.	ENSG00000167258	ENSG00000167258	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AC079949.3	FP236383.3	+/.	+/.	12:127165976	21:8442049	intron	intron	translocation	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000286016	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SYT14	AC025580.2	+/+	+/-	1:210168091	15:45462586	3'UTR	intron	translocation/5'-5'	0	0	0	3	23	low	.	.	C2_domain(100%)|	.	.	ENSG00000143469	ENSG00000259354	.	.	downstream	downstream	mismatches(1)	.	.	.
LETM1	LTBP2	-/.	-/.	4:1841523	14:74533690	CDS	intron	translocation/3'-3'	0	0	0	32	0	low	.	.	.	.	.	ENSG00000168924	ENSG00000119681	.	.	downstream	downstream	mismatches(1)	.	.	.
NOS3	DDB2	+/.	+/.	7:150995588	11:47233103	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000164867	ENSG00000134574	.	.	upstream	downstream	mismatches(2)	.	.	.
RPL34P29(4462),AC007603.3(15171)	AC132825.3(10516),AC132825.4(143)	./.	./.	16:49939814	17:22435247	intergenic	intergenic	translocation	0	0	0	18	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL34P29(4462),AC007603.3(15171)	AC021683.2	./.	+/.	16:49939814	17:77560604	intergenic	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	.	ENSG00000267506	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL34P29(4462),AC007603.3(15171)	HUNK	./.	+/.	16:49939814	21:31874046	intergenic	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	.	ENSG00000142149	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL34P29(4462),AC007603.3(15171)	DPP9	./.	-/.	16:49939814	19:4685398	intergenic	exon	translocation	0	0	0	18	0	low	.	.	.	.	.	.	ENSG00000142002	.	.	upstream	downstream	mismatches(1)	.	.	.
KRT78(29055),RPL7P41(7282)	RPL34P29(4462),AC007603.3(15171)	./.	./.	12:52878147	16:49939814	intergenic	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
DFFB	RPL34P29(4462),AC007603.3(15171)	+/.	./.	1:3866725	16:49939814	intron	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000169598	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL34P29(4462),AC007603.3(15171)	MSI2	./.	+/.	16:49939814	17:57348616	intergenic	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	.	ENSG00000153944	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02374(7619),AC097652.1(87118)	RPL34P29(4462),AC007603.3(15171)	./.	./.	4:187216965	16:49939814	intergenic	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX16	AP003390.1(4494),AP001994.1(77187)	-/.	./.	8:81842436	11:119744117	intron	intergenic	translocation	0	0	0	45	3583	low	.	.	.	.	.	ENSG00000104497	.	.	.	upstream	downstream	duplicates	.	.	.
AL365255.1(157447),MIR4689(36930)	RPL34P29(4462),AC007603.3(15171)	./.	./.	1:5825742	16:49939814	intergenic	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AL163974.1(22793),LINC00523(45131)	MRPS11P1(70076),AL133465.1(45730)	./.	./.	14:100612119	20:20924718	intergenic	intergenic	translocation	0	0	0	23	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL34P29(4462),AC007603.3(15171)	AC008770.4	./.	+/.	16:49939814	19:12012007	intergenic	intron	translocation	0	0	0	18	0	low	.	.	.	.	.	.	ENSG00000286098	.	.	upstream	upstream	mismatches(1)	.	.	.
AC034187.1	IQCH	-/.	+/.	3:8591012	15:67310424	intron	intron	translocation	0	0	0	1	40	low	.	.	.	.	.	ENSG00000224884	ENSG00000103599	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.6	CDC27P1(3882),AC097532.1(18871)	-/-	./-	21:8210563	2:132266924	exon	intergenic	translocation	0	0	0	2	9	low	.	.	.	.	.	ENSG00000280800	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ZHX1	RPL34P29(4462),AC007603.3(15171)	-/.	./.	8:123274447	16:49939814	5'UTR	intergenic	translocation	0	0	0	0	18	low	.	.	.	.	.	ENSG00000165156	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CDK14	FP236383.3	+/+	+/+	7:91209432	21:8442052	3'UTR	intron	translocation	0	0	0	5	5962	low	.	.	Protein_kinase_domain(100%)|	.	.	ENSG00000058091	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC093765.3	FP236383.3	-/.	+/.	4:116876481	21:8442055	intron	intron	translocation/3'-3'	0	0	0	0	5962	low	.	.	.	.	.	ENSG00000287290	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PTGER4P2-CDK2AP2P2(5279),MYO5BP1(4762)	HYDIN	./.	-/.	9:41288125	16:71158143	intergenic	intron	translocation	0	0	0	0	54	low	.	.	.	.	.	.	ENSG00000157423	.	.	downstream	downstream	duplicates(2),mismatches(1)	.	.	.
DPP10	5_8S_rRNA(2084),FP236383.3(121626)	+/.	./.	2:114672372	21:8259017	intron	intergenic	translocation	0	0	0	5	5911	low	.	.	.	.	.	ENSG00000175497	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
CADM2	OR5K1	+/.	+/.	3:85836872	3:98468649	intron	intron	inversion/3'-3'	0	0	0	19	4	low	.	.	.	.	.	ENSG00000175161	ENSG00000232382	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
YWHAZ	FP236383.3	-/.	+/.	8:100917286	21:8397825	3'UTR	intron	translocation/3'-3'	0	0	0	5	1126	low	.	.	.	.	.	ENSG00000164924	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MSH3	CASC17	+/.	-/.	5:80854005	17:71148953	intron	intron	translocation/5'-5'	0	0	0	26	0	low	.	.	.	.	.	ENSG00000113318	ENSG00000260785	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC01377(90375),LINC01019(85402)	FAM27C	./.	+/.	5:3271862	9:61858250	intergenic	intron	translocation	0	0	0	10	0	low	.	.	.	.	.	.	ENSG00000231527	.	.	downstream	downstream	mismatches(1)	.	.	.
DPP10	FP236383.3	+/.	+/.	2:114672372	21:8397822	intron	intron	translocation	0	0	0	5	1126	low	.	.	.	.	.	ENSG00000175497	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916550	21:8398057	intron	intron	translocation/5'-5'	0	0	0	47	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	downstream	mismatches	.	.	.
VAV3	CADM2	-/.	+/.	1:107670554	3:85179903	intron	intron	translocation/3'-3'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000134215	ENSG00000175161	.	.	downstream	upstream	mismatches(1)	.	.	.
AC233702.2(14060),AC233702.1(6247)	FP671120.4	./.	+/.	17:21608240	21:8218218	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093765.3	FP236383.3	-/.	+/.	4:116876481	21:8397825	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000287290	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
YWHAZ	FP671120.4	-/.	+/.	8:100917286	21:8214791	3'UTR	intron	translocation/3'-3'	0	0	0	5	5263	low	.	.	.	.	.	ENSG00000164924	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
INPP4B	DHFR	-/.	-/.	4:142713193	5:80650759	intron	intron	translocation/3'-3'	0	0	0	17	0	low	.	.	.	.	.	ENSG00000109452	ENSG00000228716	.	.	downstream	downstream	mismatches(1)	.	.	.
AC093765.3	FP671120.4	-/.	+/.	4:116876481	21:8214791	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000287290	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
IQCH-AS1	MCF2	-/.	-/.	15:67310422	X:139639534	intron	intron	translocation/5'-5'	0	0	0	40	0	low	.	.	.	.	.	ENSG00000259673	ENSG00000101977	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP173(55855),AC017087.1(223201)	FP671120.4	./.	+/.	4:178462685	21:8214799	intergenic	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
SOX2-OT	KDM4C	+/.	+/.	3:181710976	9:7086288	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000242808	ENSG00000107077	.	.	downstream	upstream	mismatches(1)	.	.	.
HBB	PHF21A	-/.	-/.	11:5225537	11:46063192	3'UTR	intron	inversion/3'-3'	0	0	0	91	0	low	.	.	.	.	.	ENSG00000244734	ENSG00000135365	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
RNA5SP173(55855),AC017087.1(223201)	5_8S_rRNA(2095),FP236383.3(121615)	./.	./.	4:178462685	21:8259028	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
G6PC2	SPC25	+/.	-/.	2:168903615	2:168903627	intron	intron	duplication/3'-3'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000152254	ENSG00000152253	.	.	upstream	downstream	low_entropy(1)	.	.	.
AP003390.1(4430),AP001994.1(77251)	GPC3	./.	-/.	11:119744053	X:133661622	intergenic	intron	translocation	0	0	0	3458	143	low	.	.	.	.	.	.	ENSG00000147257	.	.	downstream	downstream	mismatches	.	.	.
AC139365.1(221268),AC118650.1(2132945)	FP236383.3	./.	+/.	8:43895859	21:8442063	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
GAS8	PPP1R16B	+/+	+/-	16:90019745	20:38894002	5'UTR	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000141013	ENSG00000101445	.	.	downstream	downstream	mismatches(1)	.	.	.
CCSER1	HBG2	+/.	-/.	4:90127964	11:5367601	intron	intron	translocation/3'-3'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000184305	ENSG00000196565	.	.	upstream	downstream	mismatches(1)	.	.	.
CCNT2-AS1	CCNT2-AS1	-/.	-/.	2:134845510	2:134845525	intron	intron	duplication/ITD	0	0	0	16	16	low	.	.	.	.	.	ENSG00000224043	ENSG00000224043	.	.	upstream	downstream	duplicates(10),low_entropy(5)	.	.	.
RNU1-27P(7253),RNU1-28P(2096)	AP001599.1	./.	+/.	14:34554130	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
KMT2C	AC105339.1(1524),ACTG1P17(10320)	-/.	./.	7:152384549	15:82715553	intron	intergenic	translocation	0	0	0	177	0	low	.	.	.	.	.	ENSG00000055609	.	.	.	upstream	upstream	mismatches(3)	.	.	.
ARHGAP17	FP236383.3	-/.	+/.	16:24994693	21:8397833	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000140750	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
AP000255.1(48523),TPT1P1(55411)	AP000255.1(48624),TPT1P1(55310)	./.	./.	21:31784930	21:31785031	intergenic	intergenic	duplication	0	0	0	220	74	low	.	.	.	.	.	.	.	.	.	upstream	downstream	same_gene	.	.	.
RPS7P4(20662),COX6B1P7(18671)	FP236383.3	./.	+/.	1:68263717	21:8441654	intergenic	intron	translocation	0	0	0	0	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(30),mismatches(22)	.	.	.
ARHGAP17	FP671120.4	-/.	+/.	16:24994693	21:8214799	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000140750	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
CSMD1	FP236383.3	-/.	+/.	8:4575899	21:8397834	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000183117	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC01762	FP236383.3	-/.	+/.	1:116474957	21:8397834	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000233154	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC01762	5_8S_rRNA(2096),FP236383.3(121614)	-/.	./.	1:116474957	21:8259029	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000233154	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
MIR3169(142297),PCDH20(67508)	CDH8	./.	-/.	13:61342177	16:61831043	intergenic	intron	translocation	0	0	0	0	57	low	.	.	.	.	.	.	ENSG00000150394	.	.	downstream	downstream	duplicates(2),mismatches(2)	.	.	.
CRADD	UBAP1L	+/.	-/.	12:93846255	15:65103008	intron	intron	translocation/5'-5'	0	0	0	24	0	low	.	.	.	.	.	ENSG00000169372	ENSG00000246922	.	.	downstream	upstream	mismatches(2)	.	.	.
PRICKLE2	FP236383.3	-/.	+/.	3:64188277	21:8397834	intron	intron	translocation/3'-3'	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000163637	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
PRICKLE2-AS3	FP671120.4	+/.	+/.	3:64188277	21:8214800	intron	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000226017	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
TYSND1	AC005244.2(158893),AC084167.1(16578)	-/-	./-	10:70146127	17:12374160	CDS	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000156521	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NDEL1	DBNDD2	+/.	+/.	17:8463508	20:45407986	intron	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	ENSG00000166579	ENSG00000244274	.	.	downstream	upstream	mismatches(1)	.	.	.
FAT1(23080),AC108865.1(141167)	PDE1C	./.	-/.	4:186749802	7:31924648	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000154678	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
NOTCH2NLC	TMPO-AS1	+/.	-/.	1:149459571	12:98516166	intron	exon	translocation/3'-3'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000286219	ENSG00000257167	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02469	AC092757.2	+/.	+/.	4:79684911	15:59122737	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000248408	ENSG00000259732	.	.	downstream	downstream	mismatches(1)	.	.	.
GNG12-AS1	CCNB2	+/.	+/.	1:67896729	15:59122737	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000232284	ENSG00000157456	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079949.3	5_8S_rRNA(2081),FP236383.3(121629)	+/.	./.	12:127165976	21:8259014	intron	intergenic	translocation	0	0	0	0	5911	low	.	.	.	.	.	ENSG00000286016	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GNG12-AS1	AC092757.2	+/.	+/.	1:67896729	15:59122737	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000232284	ENSG00000259732	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479906	intron	intron	duplication/3'-3'	0	0	0	558	1761	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	low_entropy	.	.	.
RGN	RGN	+/.	+/.	X:47086734	X:47086749	intron	intron	duplication/ITD	0	0	0	40	39	low	.	.	.	.	.	ENSG00000130988	ENSG00000130988	.	.	upstream	downstream	low_entropy(4),merge_adjacent	.	.	.
KCNAB2	TUBBP11(353348),RAP1BP2(78779)	+/.	./.	1:6071909	3:103984260	intron	intergenic	translocation	0	0	0	0	83	low	.	.	.	.	.	ENSG00000069424	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GNG12-AS1	RPL10L(115581),MDGA2(72267)	+/.	./.	1:67896729	14:46767362	intron	intergenic	translocation	0	0	0	0	5	low	.	.	.	.	.	ENSG00000232284	.	.	.	downstream	downstream	mismatches(1)	.	.	.
CREBRF	AC022826.2	+/.	-/.	5:173056549	8:73820101	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164463	ENSG00000258677	.	.	downstream	upstream	duplicates(9),mismatches(2)	.	.	.
PDE3A	DTNA	+/.	+/.	12:20551480	18:34571662	intron	intron	translocation	0	0	0	7	14	low	.	.	.	.	.	ENSG00000172572	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL10L(115581),MDGA2(72267)	NPLOC4	./.	-/.	14:46767362	17:81626505	intergenic	intron	translocation	0	0	0	5	0	low	.	.	.	.	.	.	ENSG00000182446	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	AP003973.3	+/.	+/.	11:47233105	11:111099120	intron	intron	inversion/3'-3'	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000287028	.	.	downstream	downstream	duplicates(1)	.	.	.
GNG12-AS1	GPR55	+/.	-/.	1:67896729	2:230948894	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000232284	ENSG00000135898	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02098(161774),ETS1(55546)	FP671120.4	./.	+/.	11:128403215	21:8214808	intergenic	intron	translocation	0	0	0	8	6035	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches	.	.	.
LINC02609	KLHL32	-/.	+/.	1:90839715	6:97100445	intron	intron	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000233593	ENSG00000186231	.	.	upstream	upstream	mismatches(1)	.	.	.
PFN2	CCNB2	-/.	+/.	3:149984027	15:59122737	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000070087	ENSG00000157456	.	.	downstream	downstream	mismatches(1)	.	.	.
NUFIP1P1(153072),AL450336.1(462261)	NTM	./.	+/.	6:66247981	11:132132479	intergenic	intron	translocation	0	0	0	4	2	low	.	.	.	.	.	.	ENSG00000182667	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
LSP1	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	11:1851888	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000130592	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02745	CCNB2	-/.	+/.	11:42090408	15:59122737	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255300	ENSG00000157456	.	.	upstream	downstream	mismatches(1)	.	.	.
AC092944.1	RN7SL97P(34682),AC027229.1(100002)	+/.	./.	3:157252490	18:25853214	intron	intergenic	translocation	0	0	0	26	4	low	.	.	.	.	.	ENSG00000243176	.	.	.	upstream	upstream	low_entropy	.	.	.
LINC02745	AC092757.2	-/.	+/.	11:42090408	15:59122737	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000255300	ENSG00000259732	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00303(15347),AL592146.2(7921)	AC026898.1(1903),SMAD2(103309)	./.	./.	1:204056612	18:47705648	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
KIF26B	FAT1(23087),AC108865.1(141160)	+/.	./.	1:245500131	4:186749809	intron	intergenic	translocation	0	0	0	10	0	low	.	.	.	.	.	ENSG00000162849	.	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
WAC(10351),RNU4ATAC6P(19167)	PLCB4	./.	+/.	10:28633463	20:9168924	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000101333	.	.	upstream	upstream	mismatches(1)	.	.	.
RAMP3(65696),AC073968.2(16683)	FP236383.3	./.	+/.	7:45251998	21:8441572	intergenic	intron	translocation	0	0	0	87	0	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
WAC(10352),RNU4ATAC6P(19166)	DTNA	./.	+/.	10:28633464	18:34571660	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS18P6(259149),MTHFD2P1(222897)	FP236383.3	./.	+/.	3:95431526	21:8441655	intergenic	intron	translocation	0	0	0	45	546	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(12),mismatches(9)	.	.	.
ANXA10	PLCB4	+/.	+/.	4:168122498	20:9168924	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109511	ENSG00000101333	.	.	upstream	upstream	mismatches(1)	.	.	.
NPAP1	FP671120.4	+/+	+/+	15:24675920	21:8214784	CDS	intron	translocation	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000185823	ENSG00000278996	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
SLC39A14	LRRC4C	+/.	-/.	8:22396602	11:41021153	intron	intron	translocation/5'-5'	0	0	0	223	632	low	.	.	.	.	.	ENSG00000104635	ENSG00000148948	.	.	downstream	upstream	low_entropy	.	.	.
KYNU(33029),ARHGAP15(2500)	ANXA10	./.	+/.	2:143088862	4:168122499	intergenic	intron	translocation	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000109511	.	.	downstream	upstream	mismatches(1)	.	.	.
SERTAD4	ERC2	+/.	-/.	1:210234287	3:55815741	intron	intron	translocation	0	0	0	2	1	low	.	.	.	.	.	ENSG00000082497	ENSG00000187672	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00303(15347),AL592146.2(7921)	ANKMY2	./.	-/.	1:204056612	7:16603058	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000106524	.	.	upstream	downstream	mismatches(1)	.	.	.
RC3H1	SNAP47	-/.	+/.	1:173991583	1:227740052	intron	intron	deletion/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000135870	ENSG00000143740	.	.	downstream	upstream	mismatches(1)	.	.	.
KYNU(33029),ARHGAP15(2500)	AC010148.1	./.	-/.	2:143088862	2:234815302	intergenic	intron	inversion	0	0	0	9	0	low	.	.	.	.	.	.	ENSG00000235726	.	.	downstream	downstream	mismatches(1)	.	.	.
MAP2K4	PLCB4	+/.	+/.	17:12046076	20:9168924	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000065559	ENSG00000101333	.	.	upstream	upstream	mismatches(1)	.	.	.
PRKCH	5_8S_rRNA(2091),FP236383.3(121619)	+/.	./.	14:61526875	21:8259024	intron	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000027075	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RFPL4AP7(64492),AC090155.2(79427)	WNT10B	./.	-/.	8:49417336	12:48969964	intergenic	intron	translocation	0	0	0	30	0	low	.	.	.	.	.	.	ENSG00000169884	.	.	upstream	upstream	mismatches(1)	.	.	.
MAP2K4	DTNA	+/.	+/.	17:12046077	18:34571660	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000065559	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
DNAH14	MAP4K4	+/.	+/.	1:225078903	2:101785687	intron	intron	translocation	0	0	0	144	496	low	.	.	.	.	.	ENSG00000185842	ENSG00000071054	.	.	downstream	upstream	mismatches	.	.	.
AC007405.1	NACC2	-/.	-/.	2:170768859	9:136019086	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000234350	ENSG00000148411	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00303(15347),AL592146.2(7921)	MAP2K4	./.	+/.	1:204056612	17:12046076	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000065559	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01060	AC002463.1	+/.	+/.	4:188533877	7:112751480	intron	intron	translocation	0	0	0	0	39	low	.	.	.	.	.	ENSG00000249378	ENSG00000223646	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
FP236383.4	DTNA	-/-	+/-	21:8393999	18:34571662	exon	intron	translocation/5'-5'	0	0	0	7	14	low	.	.	.	.	.	ENSG00000280614	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01381(6971),DNMT3A(11682)	5_8S_rRNA(2091),FP236383.3(121619)	./.	./.	2:25216173	21:8259024	intergenic	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	.	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP671120.6	DTNA	-/-	+/-	21:8210964	18:34571662	exon	intron	translocation/5'-5'	0	0	0	3	14	low	.	.	.	.	.	ENSG00000280800	ENSG00000134769	.	.	upstream	downstream	mismatches(1)	.	.	.
TRERF1	AP005436.1	-/.	-/.	6:42262584	11:88092332	intron	intron	translocation	0	0	0	1540	1166	low	.	.	.	.	.	ENSG00000124496	ENSG00000255102	.	.	downstream	upstream	low_entropy	.	.	.
EVX2	SLC26A7(79173),AC103409.1(65596)	-/.	./.	2:176083065	8:91477328	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000174279	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LDHAL6CP(14882),RSL24D1P5(33491)	LDHAL6CP(14928),RSL24D1P5(33445)	./.	./.	12:63021784	12:63021830	intergenic	intergenic	duplication/ITD	0	0	0	3	3	low	.	.	.	.	.	.	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC01320	FP671120.4	+/.	+/.	2:33767498	21:8214405	intron	intron	translocation	0	0	0	72	8	low	.	.	.	.	.	ENSG00000228262	ENSG00000278996	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
THCAT155	THCAT155	-/.	-/.	12:3490676	12:3490689	intron	intron	duplication/ITD	0	0	0	8	8	low	.	.	.	.	.	ENSG00000287243	ENSG00000287243	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8205169	21:8397825	intron	intron	deletion/read-through	0	0	0	0	1126	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.8(8313),MIR6724-2(145)	FP236383.3	./.	+/.	21:8249360	21:8442055	intergenic	intron	deletion/read-through	0	0	0	0	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ZPR1	LAMA5	-/.	-/.	11:116787894	20:62337135	CDS	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000109917	ENSG00000130702	.	.	downstream	upstream	mismatches(1)	.	.	.
GCK	TRPC5	-/.	-/.	7:44149936	X:111798474	intron	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	.	.	.	ENSG00000106633	ENSG00000072315	.	.	upstream	upstream	mismatches(1)	.	.	.
AUTS2	LAMA5	+/.	-/.	7:70496269	20:62337135	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000158321	ENSG00000130702	.	.	upstream	upstream	mismatches(1)	.	.	.
AUTS2	LAMA5	+/.	-/.	7:70496497	20:62337135	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000158321	ENSG00000130702	.	.	upstream	upstream	mismatches(1)	.	.	.
OTX2P2(39023),PABPC1P2(70370)	MTRNR2L8	./.	-/.	2:146517136	11:10509085	intergenic	5'UTR	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000255823	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
AUTS2	LAMA5	+/.	-/.	7:70497292	20:62337135	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000158321	ENSG00000130702	.	.	upstream	upstream	mismatches(1)	.	.	.
ASAH2	AC008035.1	-/.	+/.	10:50267108	12:46639336	intron	intron	translocation/3'-3'	0	0	0	0	32	low	.	.	.	.	.	ENSG00000188611	ENSG00000272369	.	.	downstream	upstream	mismatches(1)	.	.	.
XKR6	LINC02452(22112),ELK3(137)	-/.	./.	8:11201252	12:96194238	CDS	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000171044	.	.	.	downstream	upstream	mismatches(1)	.	.	.
BICC1	GAB3	+/.	-/.	10:58688002	X:154751292	intron	intron	translocation	0	0	0	87	2	low	.	.	.	.	.	ENSG00000122870	ENSG00000160219	.	.	downstream	downstream	homopolymer(1)	.	.	.
SEMA4F	ADGRF1	+/.	-/.	2:74654669	6:47017803	intron	exon	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000135622	ENSG00000153292	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
ANKH(25),AC016575.1(529)	DIAPH3	./.	-/.	5:14871803	13:59923756	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000139734	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
APLP2	SHISA6	+/.	+/.	11:130070190	17:11337251	intron	intron	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000084234	ENSG00000188803	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
Y_RNA(10827),TBX3(1366)	FP236383.3	./.	+/.	12:114668889	21:8438949	intergenic	intron	translocation	0	0	0	0	139	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC01137	PRKAG2	-/.	-/.	1:37432838	7:151786887	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000233621	ENSG00000106617	.	.	downstream	upstream	mismatches(1)	.	.	.
ZNF808	ZNF701	+/.	+/.	19:52561159	19:52561215	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000198482	ENSG00000167562	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00348(85851),RABEPKP1(41942)	MN1(31685),PITPNB(18228)	./.	./.	13:71254268	22:27833441	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
DIAPH3	TEF	-/.	+/.	13:59923756	22:41381347	intron	intron	translocation/5'-5'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000139734	ENSG00000167074	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
SYNDIG1	TRPC4AP	+/.	-/.	20:24469666	20:35084335	5'UTR	intron	inversion	0	0	0	0	4	low	.	.	.	.	.	ENSG00000101463	ENSG00000100991	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FXNP1(22669),NRXN3(87426)	FXNP1(22685),NRXN3(87410)	./.	./.	14:78082947	14:78082963	intergenic	intergenic	duplication/ITD	0	0	0	336	204	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(1),merge_adjacent	.	.	.
AC079193.1(4368),ZDHHC2(1226)	GALP(1485),ZSCAN5B(2310)	./.	./.	8:17155256	19:56187260	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC75P1(22486),RNU6-1270P(36012)	DUX4L10(1775),DUX4L11(268)	./.	./.	3:73205777	10:133746373	intergenic	intergenic	translocation	0	0	0	15	2	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	RN7SKP263(63509),AC123567.1(67521)	+/.	./.	2:32916405	12:94072556	intron	intergenic	translocation	0	0	0	57	28	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
AC079193.1(4368),ZDHHC2(1226)	PRMT8(960),CRACR2A(11700)	./.	./.	8:17155256	12:3594933	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MAFA	SUPT5H	-/-	+/+	8:143429793	19:39458232	CDS	exon	translocation	0	0	0	0	24	low	.	.	Maf_N-terminal_region(100%)|Early_transcription_elongation_factor_of_RNA_pol_II__NGN_section(100%),KOW_motif(100%),Spt5_transcription_elongation_factor__acidic_N-terminal(71%)	.	.	ENSG00000182759	ENSG00000196235	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAFA	SUPT5H	-/-	+/+	8:143429790	19:39458232	CDS	exon	translocation	0	0	0	0	24	low	.	.	Maf_N-terminal_region(100%)|Early_transcription_elongation_factor_of_RNA_pol_II__NGN_section(100%),KOW_motif(100%),Spt5_transcription_elongation_factor__acidic_N-terminal(71%)	.	.	ENSG00000182759	ENSG00000196235	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL449106.1	AL359715.3(60),RPL17P25(17096)	-/-	./+	1:178725055	6:80356919	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	.	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TLL1	AL162151.3(95346),AL162151.1(59525)	+/.	./.	4:166092989	14:99098891	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000038295	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392801	1:90392810	intron	intron	duplication/ITD	0	0	0	312	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
AL449106.1	AL162231.5	-/-	+/-	1:178725055	9:34768914	exon	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000273062	ENSG00000288583	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SREBF2-AS1	AL162231.5	-/-	+/-	22:41833576	9:34768914	exon	intron	translocation/5'-5'	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	ENSG00000288583	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
SREBF2-AS1	AC005921.1(11317),WFIKKN2(25682)	-/-	./-	22:41833576	17:50808968	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ARHGEF26-AS1	AC005921.1(11316),WFIKKN2(25683)	-/-	./-	3:154121333	17:50808967	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL449106.1	AC091588.3	-/-	-/+	1:178725055	18:22204128	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273062	ENSG00000266283	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ARHGEF26-AS1	AC091588.3	-/-	-/+	3:154121333	18:22204129	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000243069	ENSG00000266283	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
AL449106.1	CCDC3	-/-	-/+	1:178725055	10:13099408	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000273062	ENSG00000151468	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SREBF2-AS1	CCDC3	-/-	-/+	22:41833576	10:13099408	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000184068	ENSG00000151468	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
NLGN1	UBE2W	+/.	-/.	3:173833398	8:73820119	intron	intron	translocation	0	0	0	0	10	low	.	.	.	.	.	ENSG00000169760	ENSG00000104343	.	.	downstream	downstream	mismatches(1)	.	.	.
SREBF2-AS1	AC122694.1(4465580),EMB(34642)	-/-	./-	22:41833576	5:50361550	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ARHGEF26-AS1	AC016304.1(54227),TMCO5A(376609)	-/-	./-	3:154121333	15:37545330	exon	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	.	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
AL449106.1	KDM4B	-/-	+/+	1:178725055	19:5090392	exon	intron	translocation	0	0	0	0	9	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000273062	ENSG00000127663	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SREBF2-AS1	KDM4B	-/-	+/+	22:41833576	19:5090392	exon	intron	translocation	0	0	0	0	9	low	.	.	|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)	.	.	ENSG00000184068	ENSG00000127663	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
TRNAU1AP	HPAT5	+/+	+/-	1:28553193	6:167236379	exon	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(3%)|	.	.	ENSG00000180098	ENSG00000280707	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022826.2	AC106782.4(5723),CD2BP2(1714)	-/.	./.	8:73820102	16:30349059	intron	intergenic	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000258677	.	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL449106.1	ACACA	-/-	-/-	1:178725055	17:37146745	exon	intron	translocation	0	0	0	0	9	low	.	.	|Carboxyl_transferase_domain(66%)	.	.	ENSG00000273062	ENSG00000278540	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
CMIP	FP236383.3	+/.	+/.	16:81678636	21:8438949	intron	intron	translocation/3'-3'	0	0	0	0	139	low	.	.	.	.	.	ENSG00000153815	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
SREBF2-AS1	PARD3B	-/-	+/+	22:41833576	2:205321478	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000184068	ENSG00000116117	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
ARHGEF26-AS1	PARD3B	-/-	+/+	3:154121333	2:205321479	exon	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000243069	ENSG00000116117	.	.	upstream	upstream	duplicates(2),mismatches(1)	.	.	.
SREBF2-AS1	MAP3K15	-/-	-/-	22:41833576	X:19478188	exon	intron	translocation	0	0	0	0	9	low	.	.	|ASK_kinase_PH_domain(100%),MAP3K_TRAFs-binding_domain(89%),Protein_kinase_domain(100%)	.	.	ENSG00000184068	ENSG00000180815	.	.	upstream	downstream	duplicates(2),mismatches(1)	.	.	.
ZNF462	LINC02620	+/.	-/.	9:106864120	10:104479907	intron	intron	translocation	0	0	0	39	1761	low	.	.	.	.	.	ENSG00000148143	ENSG00000225768	.	.	downstream	downstream	low_entropy	.	.	.
AP003390.1(4501),AP001994.1(77180)	FRMD5(93118),GOLM2(330)	./.	./.	11:119744124	15:44288389	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
GPR39	LINC02098(161795),ETS1(55525)	+/.	./.	2:132557875	11:128403236	intron	intergenic	translocation	0	0	0	10	8	low	.	.	.	.	.	ENSG00000183840	.	.	.	downstream	downstream	mismatches(1)	.	.	.
PDS5A	FP236383.3	-/.	+/.	4:39875784	21:8440593	intron	intron	translocation/3'-3'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000121892	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
PLCL1	WEE1	+/.	+/.	2:198277621	11:9575426	intron	intron	translocation/3'-3'	0	0	0	218	0	low	.	.	.	.	.	ENSG00000115896	ENSG00000166483	.	.	upstream	upstream	mismatches	.	.	.
DPYSL3(24771),JAKMIP2-AS1(25155)	AP003066.1	./.	+/.	5:147534839	11:96847852	intergenic	intron	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000254587	.	.	upstream	downstream	mismatches(1)	.	.	.
PLCL1	SWAP70	+/.	+/.	2:198277621	11:9575426	intron	intergenic	translocation/3'-3'	0	0	0	218	0	low	.	.	.	.	.	ENSG00000115896	ENSG00000133789	.	.	upstream	upstream	mismatches	.	.	.
TRERF1	AP001823.1(3429),ELMOD1(759)	-/.	./.	6:42262463	11:107590332	intron	intergenic	translocation	0	0	0	2363	1909	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	upstream	mismatches	.	.	.
HAR1B	HAR1B	-/.	-/.	20:63101565	20:63101574	intron	intron	duplication/ITD	0	0	0	8	1	low	.	.	.	.	.	ENSG00000231133	ENSG00000231133	.	.	upstream	downstream	duplicates(1),low_entropy(1),merge_adjacent	.	.	.
HAR1B	HAR1B	-/.	-/.	20:63101558	20:63101571	intron	intron	duplication/ITD	0	0	0	8	1	low	.	.	.	.	.	ENSG00000231133	ENSG00000231133	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
HAR1B	HAR1B	-/.	-/.	20:63101569	20:63101578	intron	intron	duplication/ITD	0	0	0	8	1	low	.	.	.	.	.	ENSG00000231133	ENSG00000231133	.	.	upstream	downstream	duplicates(1),merge_adjacent	.	.	.
RBM5	U3(12667),LYPLA1P3(25304)	+/.	./.	3:50103159	6:71139772	CDS	intergenic	translocation	0	0	0	0	6	low	.	.	.	.	.	ENSG00000003756	.	.	.	upstream	downstream	mismatches(1)	.	.	.
FOXI3	MSANTD3-TMEFF1	-/.	+/.	2:88452451	9:100456470	CDS	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	ENSG00000214336	ENSG00000251349	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	HS6ST2	+/.	-/.	21:8394491	X:132708551	intron	intron	translocation/3'-3'	0	0	0	1	7	low	.	.	.	.	.	ENSG00000280441	ENSG00000171004	.	.	upstream	downstream	mismatches(1)	.	.	.
TPTE2P1(13485),RPL34P27(6605)	TEX29(173737),AL359649.1(70215)	./.	./.	13:24981972	13:111517986	intergenic	intergenic	deletion	0	0	0	5	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HAR1B	HAR1B	-/.	-/.	20:63101570	20:63101578	intron	intron	duplication/ITD	0	0	0	8	1	low	.	.	.	.	.	ENSG00000231133	ENSG00000231133	.	.	upstream	downstream	duplicates(4),low_entropy(1)	.	.	.
LINC00486	LINC00486	+/.	+/.	2:32916407	2:32916556	intron	intron	inversion/3'-3'	0	0	0	57	47	low	.	.	.	.	.	ENSG00000230876	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
AL512452.1	FP671120.4	-/.	+/.	13:67769886	21:8214800	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000287876	ENSG00000278996	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
ZNF141	AC005357.2	+/.	+/.	4:375615	19:27961840	3'UTR	intron	translocation/3'-3'	0	0	0	1	4	low	.	.	.	.	.	ENSG00000131127	ENSG00000267623	.	.	upstream	upstream	mismatches(1)	.	.	.
TRERF1	AP001823.1(3430),ELMOD1(758)	-/.	./.	6:42262463	11:107590333	intron	intergenic	translocation	0	0	0	2363	1909	low	.	.	.	.	.	ENSG00000124496	.	.	.	upstream	upstream	low_entropy	.	.	.
ZNF876P(12612),AC079140.3(385)	AC005357.2	./.	+/.	4:268597	19:27961840	intergenic	intron	translocation	0	0	0	1	4	low	.	.	.	.	.	.	ENSG00000267623	.	.	downstream	upstream	mismatches(1)	.	.	.
LPP	MT-RNR1	+/.	+/.	3:188403065	MT:1512	intron	exon	translocation/3'-3'	0	0	0	0	.	low	.	.	.	.	.	ENSG00000145012	ENSG00000211459	.	.	upstream	upstream	uninteresting_contigs(1)	.	.	.
HYDIN	AC015908.7(134578),AC015908.2(134578),RN7SL601P(141982)	-/.	./.	16:70991675	17:11015473	intron	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000157423	.	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
MT-CO2	MT-RNR2	+/+	+/+	MT:8241	MT:2217	CDS	exon	duplication	0	0	0	.	.	low	.	.	.	.	.	ENSG00000198712	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
HFM1	GAPDHP36(89379),RALBP1P1(20620)	-/.	./.	1:91387408	3:180302487	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000162669	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HFM1	COMMD10	-/.	+/.	1:91387408	5:116216381	intron	intron	translocation	0	0	0	6	7	low	.	.	.	.	.	ENSG00000162669	ENSG00000145781	.	.	downstream	downstream	mismatches(1)	.	.	.
GPAT3	MT-RNR2	+/.	+/.	4:83567271	MT:2716	intron	exon	translocation	0	0	0	7	.	low	.	.	.	.	.	ENSG00000138678	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC233702.2(14060),AC233702.1(6247)	FP236383.3	./.	+/.	17:21608240	21:8445488	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NCAN	5_8S_rRNA(2092),FP236383.3(121618)	+/.	./.	19:19212390	21:8259025	intron	intergenic	translocation	0	0	0	5	6	low	.	.	.	.	.	ENSG00000130287	.	.	.	downstream	upstream	duplicates(3),mismatches(2)	.	.	.
COMMD10	FP236383.3	+/.	+/.	5:116216381	21:8445488	intron	intron	translocation	0	0	0	7	6	low	.	.	.	.	.	ENSG00000145781	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
UBBP4	FP671120.4	+/.	+/.	17:22095184	21:8218218	intron	intron	translocation/3'-3'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000263563	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
JARID2	LINC02864	+/.	-/.	6:15269292	18:73168244	intron	intron	translocation/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000008083	ENSG00000263711	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL35AP21(3652),CEMIP2(89781)	MT-RNR2	./.	+/.	9:71593585	MT:2230	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
AC016687.3	FP671120.4	-/.	+/.	4:34005923	21:8218218	intron	intron	translocation/3'-3'	0	0	0	10	15	low	.	.	.	.	.	ENSG00000250954	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
GAPDHP36(89379),RALBP1P1(20620)	FP671120.4	./.	+/.	3:180302487	21:8218218	intergenic	intron	translocation	0	0	0	0	15	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
DENND1A(41433),LHX2(30085)	KCNB1	./.	-/.	9:123971585	20:49450415	intergenic	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000158445	.	.	upstream	downstream	mismatches(1)	.	.	.
AC016687.3	CEACAM21	-/.	+/.	4:34005923	19:41564259	intron	intron	translocation	0	0	0	10	5	low	.	.	.	.	.	ENSG00000250954	ENSG00000007129	.	.	downstream	downstream	mismatches(1)	.	.	.
AC022826.2	STK3	-/.	-/.	8:73820101	8:98939631	intron	intron	duplication	0	0	0	0	0	low	.	.	.	.	.	ENSG00000258677	ENSG00000104375	.	.	upstream	downstream	mismatches(1)	.	.	.
UBBP4	FP236383.3	+/.	+/.	17:22095184	21:8401256	intron	intron	translocation/3'-3'	0	0	0	0	15	low	.	.	.	.	.	ENSG00000263563	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
NPHP4	AC010230.1	-/.	-/.	1:5885019	5:114543700	intron	intron	translocation/5'-5'	0	0	0	0	8	low	.	.	.	.	.	ENSG00000131697	ENSG00000246316	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
MAP4K5	AC008014.1	-/-	+/+	14:50542515	12:46639334	5'UTR	intron	translocation	0	0	0	0	32	low	.	.	.	.	.	ENSG00000012983	ENSG00000257261	.	.	upstream	upstream	duplicates(5),mismatches(2)	.	.	.
HFM1	AC233702.2(14060),AC233702.1(6247)	-/.	./.	1:91387408	17:21608240	intron	intergenic	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000162669	.	.	.	downstream	downstream	mismatches(1)	.	.	.
SRGAP2C	AC009623.1(62349),AC009623.2(25544)	+/.	./.	1:121325923	8:25751135	intron	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171943	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SRGAP2	AC009623.1(62349),AC009623.2(25544)	+/.	./.	1:206344291	8:25751135	intron	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000266028	.	.	.	upstream	downstream	mismatches(1)	.	.	.
SRGAP2C	IQANK1	+/.	+/.	1:121325923	8:143751747	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171943	ENSG00000203499	.	.	upstream	upstream	mismatches(1)	.	.	.
SRGAP2	IQANK1	+/.	+/.	1:206344291	8:143751747	intron	intron	translocation/3'-3'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000266028	ENSG00000203499	.	.	upstream	upstream	mismatches(1)	.	.	.
CAMTA1	SP9	+/.	+/.	1:7054072	2:174336422	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000171735	ENSG00000217236	.	.	downstream	upstream	mismatches(1)	.	.	.
MSANTD3-TMEFF1	GLIS2	+/.	+/.	9:100456470	16:4337549	intron	3'UTR	translocation	0	0	0	2	0	low	.	.	.	.	.	ENSG00000251349	ENSG00000126603	.	.	downstream	upstream	mismatches(1)	.	.	.
ZFPM1	DBNDD1	+/.	-/.	16:88505556	16:90019748	intron	CDS	duplication/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000179588	ENSG00000003249	.	.	upstream	downstream	mismatches(1)	.	.	.
GAS8	PYY	+/+	-/+	16:90019748	17:43995061	5'UTR	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	.	.	.	ENSG00000141013	ENSG00000131096	.	.	downstream	upstream	mismatches(1)	.	.	.
BMP2K	AL359649.1	+/.	+/.	4:78801667	13:111646269	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000138756	ENSG00000204398	.	.	upstream	downstream	mismatches(1)	.	.	.
GAS8	GDF1	+/+	-/-	16:90019748	19:18891453	5'UTR	intron	translocation	0	0	0	4	0	low	.	.	|Transforming_growth_factor_beta_like_domain(100%)	.	.	ENSG00000141013	ENSG00000130283	.	.	downstream	downstream	mismatches(1)	.	.	.
AL161756.1(65),TEX21P(2969)	BANF2(94731),AL035045.1(56761)	./.	./.	14:64338704	20:17830602	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	upstream	upstream	mismatches(1)	.	.	.
GAS8	CERS1	+/+	-/-	16:90019748	19:18891453	5'UTR	intron	translocation	0	0	0	4	0	low	.	.	|TLC_domain(80%)	.	.	ENSG00000141013	ENSG00000223802	.	.	downstream	downstream	mismatches(1)	.	.	.
EML1	EML1	+/.	+/.	14:99928175	14:99928249	intron	intron	duplication/ITD	0	0	0	18	18	low	.	.	.	.	.	ENSG00000066629	ENSG00000066629	.	.	upstream	downstream	duplicates	.	.	.
AC008751.2	FP671120.4	+/.	+/.	19:58166798	21:8217546	exon	intron	translocation/3'-3'	0	0	0	0	25	low	.	.	.	.	.	ENSG00000269236	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
WDR35	WDR35	-/.	-/.	2:19934027	2:19934041	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000118965	ENSG00000118965	.	.	upstream	downstream	low_entropy(1)	.	.	.
PCDH15	FP236383.3	-/.	+/.	10:55291108	21:8400245	intron	intron	translocation/3'-3'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000150275	ENSG00000280441	.	.	downstream	upstream	duplicates(8),homopolymer(1)	.	.	.
FP671120.4	FP671120.3(2609),FP671120.7(1834)	+/.	./.	21:8214807	21:8252758	intron	intergenic	deletion/read-through	0	0	0	6035	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8214895	21:8397817	intron	intron	deletion/read-through	0	0	0	63	6042	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC00486	5_8S_rRNA(2319),FP236383.3(121391)	+/.	./.	2:32916550	21:8259252	intron	intergenic	translocation	0	0	0	47	1	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	downstream	mismatches	.	.	.
CAD(5777),SLC30A3(3964)	VENTXP2(41630),AL590681.1(46762)	./.	./.	2:27249720	13:83949411	intergenic	intergenic	translocation	0	0	0	0	9	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2191),FP236383.3(121519)	FP236383.3	./.	+/.	21:8259124	21:8442047	intergenic	intron	deletion/read-through	0	0	0	79	5962	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
UBE2W	FP236383.3	-/.	+/.	8:73820101	21:8444603	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000104343	ENSG00000280441	.	.	upstream	upstream	duplicates(9),mismatches(2)	.	.	.
FAM174C	LINC01837	+/+	-/+	19:1275622	19:31940150	CDS	intron	deletion/5'-5'	0	0	0	0	0	low	.	.	.	.	.	ENSG00000228300	ENSG00000267489	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
GNG7	LINC01837	-/.	-/.	19:2556776	19:31940151	intron	intron	inversion/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000176533	ENSG00000267489	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
ERI3	ANP32B	-/.	+/.	1:44320094	9:97983495	intron	5'UTR	translocation/3'-3'	0	0	0	67	8	low	.	.	.	.	.	ENSG00000117419	ENSG00000136938	.	.	downstream	upstream	mismatches(1)	.	.	.
ACMSD	CCNT2-AS1	+/.	-/.	2:134845512	2:134845525	intron	intron	duplication/3'-3'	0	0	0	16	16	low	.	.	.	.	.	ENSG00000153086	ENSG00000224043	.	.	upstream	downstream	low_entropy(1)	.	.	.
TMEM201	LINC01377(90356),LINC01019(85421)	+/+	./+	1:9610604	5:3271843	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	Ima1_N-terminal_domain(100%),Protein_of_unknown_function_C-terminus_(DUF2448)_(100%)|	.	.	ENSG00000188807	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ANP32B	AP001599.1	+/.	+/.	9:97983495	21:26914102	5'UTR	intron	translocation	0	0	0	8	167	low	.	.	.	.	.	ENSG00000136938	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
IQUB	AC008014.1	-/.	+/.	7:123511099	12:46509588	intron	intron	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000164675	ENSG00000257261	.	.	downstream	downstream	mismatches(1)	.	.	.
RIPK1	AL731768.1(245334),SRIP2(139748)	+/+	./-	6:3076784	X:89227687	5'UTR	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000137275	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
MKLN1	TRAF7	+/.	+/.	7:131205700	16:2177849	intron	3'UTR	translocation/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000128585	ENSG00000131653	.	.	upstream	upstream	mismatches(1)	.	.	.
CASKIN1	MKLN1	-/-	+/+	16:2177849	7:131205700	3'UTR	intron	translocation	0	0	0	0	1	low	.	.	Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),C-terminal_region_of_Caskin(100%),Caskin1_CASK-interaction_domain(100%),Proline_rich_region_of_Caskin_proteins(100%),SAM_domain_(Sterile_alpha_motif)(100%),Variant_SH3_domain(100%)|Galactose_oxidase__central_domain(100%),Kelch_motif(100%),Muskelin_N-terminus(100%)	.	.	ENSG00000167971	ENSG00000128585	.	.	upstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81565285	15:81565363	intron	intron	duplication	0	0	0	14	14	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	low_entropy(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262583	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
TNPO1(9678),AC008972.1(27224)	TRAF7	./.	+/.	5:72926411	16:2177849	intergenic	3'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000131653	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC02400(17855),AC090630.1(37372)	AL807742.1	./.	-/.	12:41792526	X:20832153	intergenic	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	.	ENSG00000283380	.	.	downstream	downstream	mismatches(1)	.	.	.
RBSN(19181),AC090954.1(13504)	SPRY1	./.	+/.	3:15118344	4:123397737	intergenic	5'UTR	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000164056	.	.	upstream	upstream	mismatches(1)	.	.	.
CASKIN1	TNPO1(9678),AC008972.1(27224)	-/-	./+	16:2177849	5:72926411	3'UTR	intergenic	translocation	0	0	0	0	0	low	.	.	Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),C-terminal_region_of_Caskin(100%),Caskin1_CASK-interaction_domain(100%),Proline_rich_region_of_Caskin_proteins(100%),SAM_domain_(Sterile_alpha_motif)(100%),Variant_SH3_domain(100%)|	.	.	ENSG00000167971	.	.	.	upstream	upstream	mismatches(1)	.	.	.
TSPOAP1-AS1	GAS2L1	+/.	+/.	17:58385558	22:29312407	intron	CDS	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000265148	ENSG00000185340	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC108103.1(259991),C5orf17(1971)	ZNF219	./.	-/.	5:23949377	14:21098282	intergenic	intron	translocation	0	0	0	12	0	low	.	.	.	.	.	.	ENSG00000165804	.	.	downstream	downstream	homopolymer(1)	.	.	.
PHKG2	5_8S_rRNA(475),FP236383.3(123235)	+/.	./.	16:30749090	21:8257408	intron	intergenic	translocation	0	0	0	221	0	low	.	.	.	.	.	ENSG00000156873	.	.	.	downstream	downstream	mismatches(1)	.	.	.
OTX2P2(39023),PABPC1P2(70370)	MT-RNR2	./.	+/.	2:146517136	MT:1774	intergenic	exon	translocation	0	0	0	0	.	low	.	.	.	.	.	.	ENSG00000210082	.	.	upstream	upstream	duplicates(1),uninteresting_contigs(1)	.	.	.
LINC00692(18212),RPEP2(123709)	OCA2	./.	-/.	3:25891960	15:27980957	intergenic	intron	translocation	0	0	0	16	0	low	.	.	.	.	.	.	ENSG00000104044	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC087269.2(3914),AC087269.1(243)	FP236383.3	./.	+/.	8:8723450	21:8399953	intergenic	intron	translocation	0	0	0	1	205	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PDE7A	FP236383.3	-/.	+/.	8:65841567	21:8444185	5'UTR	intron	translocation/3'-3'	0	0	0	0	214	low	.	.	.	.	.	ENSG00000205268	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NPAP1	FP236383.3	+/+	+/+	15:24675920	21:8444186	CDS	intron	translocation	0	0	0	0	214	low	.	.	.	.	.	ENSG00000185823	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DDB2	ZFHX3	+/.	-/.	11:47233102	16:73052942	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000140836	.	.	downstream	downstream	low_entropy(1)	.	.	.
AC104389.6	FP236383.3	-/.	+/.	11:5249917	21:8444184	intron	intron	translocation/3'-3'	0	0	0	0	214	low	.	.	.	.	.	ENSG00000284931	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TMEM45A	LINC00316(23252),MTCO1P3(10949)	+/+	./-	3:100519126	21:45365242	5'UTR	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000181458	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC084337.2	MPP3(106),CD300LG(13872)	+/.	./.	11:6496218	17:43833276	intron	intergenic	translocation	0	0	0	101	0	low	.	.	.	.	.	ENSG00000283977	.	.	.	upstream	downstream	duplicates(3),mismatches(1)	.	.	.
AC022335.1	METTL1P1(345733),RPP40P1(50413)	+/.	./.	12:21146484	X:25540940	intron	intergenic	translocation	0	0	0	7	0	low	.	.	.	.	.	ENSG00000257062	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC104389.5	FP236383.3	-/.	+/.	11:5254841	21:8444184	3'UTR	intron	translocation/3'-3'	0	0	0	0	214	low	.	.	.	.	.	ENSG00000239920	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PDE7A	FP236383.3	-/.	+/.	8:65841567	21:8399950	5'UTR	intron	translocation/3'-3'	0	0	0	0	205	low	.	.	.	.	.	ENSG00000205268	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
NPAP1	FP236383.3	+/+	+/+	15:24675920	21:8399951	CDS	intron	translocation	0	0	0	0	205	low	.	.	.	.	.	ENSG00000185823	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GAPDHP36(89379),RALBP1P1(20620)	CEACAM21	./.	+/.	3:180302487	19:41564259	intergenic	intron	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000007129	.	.	upstream	downstream	mismatches(1)	.	.	.
AP000721.1	FP236383.3	+/.	+/.	11:63978520	21:8399950	intron	intron	translocation	0	0	0	0	205	low	.	.	.	.	.	ENSG00000256100	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AC023034.1	AC060809.1	+/.	+/.	15:81683456	15:81683469	intron	intron	duplication	0	0	0	78	58	low	.	.	.	.	.	ENSG00000259594	ENSG00000259543	.	.	upstream	downstream	duplicates(2),low_entropy(1)	.	.	.
PLPP4	PLPP4	+/.	+/.	10:120574173	10:120574182	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000203805	ENSG00000203805	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
FOXP1	THEMIS	-/.	-/.	3:71361988	6:127735531	intron	intron	translocation	0	0	0	0	33	low	.	.	.	.	.	ENSG00000114861	ENSG00000172673	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PLPP4	PLPP4	+/.	+/.	10:120574172	10:120574183	intron	intron	duplication/ITD	0	0	0	4	4	low	.	.	.	.	.	ENSG00000203805	ENSG00000203805	.	.	upstream	downstream	duplicates(1),low_entropy(1)	.	.	.
PAX7	HDAC6	+/.	+/.	1:18687620	X:48801483	intron	5'UTR	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000009709	ENSG00000094631	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC012306.2	SLC38A6	+/+	+/-	2:127886715	14:61067402	exon	intron	translocation/5'-5'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000272667	ENSG00000139974	.	.	downstream	downstream	mismatches(1)	.	.	.
CFAP58	CFAP58	+/.	+/.	10:104396370	10:104396385	intron	intron	duplication/ITD	0	0	0	558	544	low	.	.	.	.	.	ENSG00000120051	ENSG00000120051	.	.	upstream	downstream	duplicates(7),low_entropy(31)	.	.	.
C7orf50	DDB2	-/.	+/.	7:1028468	11:47233105	intron	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	ENSG00000146540	ENSG00000134574	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079612.2(52740),AC093802.2(51377)	DDB2	./.	+/.	2:239683579	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
AC079612.2(52737),AC093802.2(51380)	AP001599.1	./.	+/.	2:239683576	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
C7orf50	AP001599.1	-/.	+/.	7:1028471	21:26914103	intron	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	ENSG00000146540	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
DDB2	ASCL1(4827),AC026108.2(48022)	+/.	./.	11:47233105	12:102965340	intron	intergenic	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC008817.1(51572),OXCT1(90706)	RN7SL167P(47384),AP002856.3(135209)	./.	./.	5:41639359	11:131051813	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SLAMF6P1(2318),UHMK1(48367)	KIAA2012-AS1	./.	-/.	1:162448884	2:202083777	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000222035	.	.	downstream	downstream	mismatches(1)	.	.	.
GDF11	AP001599.1	+/+	+/-	12:55750777	21:26914103	3'UTR	intron	translocation/5'-5'	0	0	0	0	167	low	.	.	TGF-beta_propeptide(100%),Transforming_growth_factor_beta_like_domain(100%)|	.	.	ENSG00000135414	ENSG00000223563	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00578	RNU6-408P(13039),AC105245.1(195059)	+/.	./.	3:177494950	18:29061758	intron	intergenic	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000228221	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFA4P1(24917),VAV3(40796)	DDB2	./.	+/.	1:107530365	11:47233105	intergenic	intron	translocation	0	0	0	0	341	low	.	.	.	.	.	.	ENSG00000134574	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFA4P1(24914),VAV3(40799)	AP001599.1	./.	+/.	1:107530362	21:26914103	intergenic	intron	translocation	0	0	0	0	167	low	.	.	.	.	.	.	ENSG00000223563	.	.	upstream	downstream	mismatches(1)	.	.	.
DDB2	NXPE2(282796),AP003179.1(138353)	+/.	./.	11:47233105	11:114989865	intron	intergenic	inversion	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC114485.1(140803),AC099567.1(232889)	PODXL	./.	-/.	1:102530433	7:131541815	intergenic	intron	translocation	0	0	0	0	8	low	.	.	.	.	.	.	ENSG00000128567	.	.	upstream	downstream	mismatches(1)	.	.	.
PODXL	MIPEP	-/.	-/.	7:131541799	13:23797451	intron	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000128567	ENSG00000027001	.	.	upstream	upstream	mismatches(1)	.	.	.
TLE4	FP671120.4	+/.	+/.	9:79614984	21:8218219	intron	intron	translocation	0	0	0	3	15	low	.	.	.	.	.	ENSG00000106829	ENSG00000278996	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
PODXL	VPS53	-/.	-/.	7:131541799	17:615527	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000128567	ENSG00000141252	.	.	upstream	downstream	mismatches(1)	.	.	.
TFRC	GAPDHP36(72027),RALBP1P1(37972)	-/-	./-	3:196081920	3:180285135	5'UTR	intergenic	deletion	0	0	0	4	2	low	.	.	.	.	.	ENSG00000072274	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
PACS1	NTRK3-AS1(144206),MRPL46(44205)	+/.	./.	11:66160715	15:88415272	intron	intergenic	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000175115	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PDPN	5_8S_rRNA(107488),FP236383.3(16222)	+/.	./.	1:13583780	21:8364421	5'UTR	intergenic	translocation	0	0	0	18	10	low	.	.	.	.	.	ENSG00000162493	.	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
AC105252.1(292284),AC079380.1(3754)	CDK9	./.	+/.	4:133867492	9:127786321	intergenic	intron	translocation	0	0	0	11	1	low	.	.	.	.	.	.	ENSG00000136807	.	.	upstream	downstream	mismatches(1)	.	.	.
RNF43	SBNO2	-/.	-/.	17:58385558	19:1119477	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000108375	ENSG00000064932	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
CCDC33	NTRK3-AS1(144206),MRPL46(44205)	+/.	./.	15:74261493	15:88415272	intron	intergenic	deletion	0	0	0	0	3	low	.	.	.	.	.	ENSG00000140481	.	.	.	downstream	upstream	mismatches(1)	.	.	.
OTUD7A	DDB2	-/-	+/-	15:31870671	11:47233103	5'UTR	intron	translocation/5'-5'	0	0	0	0	341	low	.	.	.	.	.	ENSG00000169918	ENSG00000134574	.	.	upstream	downstream	duplicates(5),mismatches(1)	.	.	.
PODXL	CCDC33	-/.	+/.	7:131541800	15:74261493	intron	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	.	.	.	ENSG00000128567	ENSG00000140481	.	.	upstream	downstream	mismatches(1)	.	.	.
PODXL	ST8SIA2	-/.	+/.	7:131541799	15:92467231	intron	3'UTR	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000128567	ENSG00000140557	.	.	upstream	upstream	mismatches(1)	.	.	.
FBXW7	LCP2(6076),AC034199.2(2666)	-/-	./-	4:152411373	5:170303891	CDS	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000109670	.	.	.	upstream	downstream	mismatches(1)	.	.	.
DYSF(13936),RPS20P10(283478)	MEGF8	./.	+/.	2:71700704	19:42370848	intergenic	intron	translocation	0	0	0	2	2	low	.	.	.	.	.	.	ENSG00000105429	.	.	downstream	upstream	mismatches	.	.	.
SFN(3791),GPN2(7885)	SFN(3852),GPN2(7824)	./.	./.	1:26868247	1:26868308	intergenic	intergenic	duplication/ITD	0	0	0	80	79	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(6),low_entropy(2)	.	.	.
MRPL57P1(19407),AL035410.2(55304)	FBXL4(41223),AL078603.1(93220)	./.	./.	1:114298682	6:98989229	intergenic	intergenic	translocation	0	0	0	0	1	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC02036	RNF43	-/.	-/.	3:194204601	17:58385558	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000225742	ENSG00000108375	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
DDB2	FP236383.3	+/.	+/.	11:47233105	21:8439287	intron	intron	translocation	0	0	0	341	0	low	.	.	.	.	.	ENSG00000134574	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
SFN(3798),GPN2(7878)	SFN(3807),GPN2(7869)	./.	./.	1:26868254	1:26868263	intergenic	intergenic	duplication/ITD	0	0	0	80	80	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(2),low_entropy(2)	.	.	.
NFIA	NDEL1	+/.	+/.	1:61305258	17:8463507	intron	intron	translocation	0	0	0	1	5	low	.	.	.	.	.	ENSG00000162599	ENSG00000166579	.	.	upstream	downstream	mismatches(1)	.	.	.
ARMH3	LINC00189	-/-	+/-	10:101889734	21:29263475	exon	intron	translocation/5'-5'	0	0	0	0	18	low	.	.	Armadillo-like_helical_domain-containing_protein_3__C-terminal(67%)|	.	.	ENSG00000120029	ENSG00000215533	.	.	upstream	downstream	mismatches(1)	.	.	.
TECPR1	ADARB2	-/.	-/.	7:98229025	10:1560459	intron	intron	translocation	0	0	0	6	0	low	.	.	.	.	.	ENSG00000205356	ENSG00000185736	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AL035415.1(67837),AC099796.2(25720)	LINC02864	./.	-/.	1:54488697	18:73168244	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000263711	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
NEK6	FP236383.3	+/.	+/.	9:124343201	21:8397815	intron	intron	translocation/3'-3'	0	0	0	4	6042	low	.	.	.	.	.	ENSG00000119408	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
TFRC	AL353595.1	-/-	+/+	3:196081920	9:11645401	5'UTR	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000072274	ENSG00000285784	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
SMNDC1(50247),AL355512.1(73655)	FP236383.3	./.	+/.	10:110355185	21:8397824	intergenic	intron	translocation	0	0	0	0	1126	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
TFRC	ROBO1	-/-	-/+	3:196081920	3:79598015	5'UTR	intron	inversion/5'-5'	0	0	0	4	6	low	.	.	.	.	.	ENSG00000072274	ENSG00000169855	.	.	upstream	upstream	duplicates(2),mismatches(2)	.	.	.
AL035415.1(67836),AC099796.2(25721)	ROBO1	./.	-/.	1:54488696	3:79598015	intergenic	intron	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000169855	.	.	downstream	upstream	duplicates(2),mismatches(1)	.	.	.
GTF2IP20	FP671120.4	-/.	+/.	1:223991979	21:8214791	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000272645	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
PAXBP1(58),C21orf62-AS1(250)	PAXBP1(69),C21orf62-AS1(239)	./.	./.	21:32771850	21:32771861	intergenic	intergenic	duplication/ITD	0	0	0	445	220	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(1),low_entropy(6)	.	.	.
SSBP3	FP671120.4	-/.	+/.	1:54369217	21:8214791	intron	intron	translocation	0	0	0	4	5263	low	.	.	.	.	.	ENSG00000157216	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC01237	MPP5	+/.	+/.	2:241961650	14:67301864	intron	intron	translocation	0	0	0	0	9	low	.	.	.	.	.	ENSG00000233806	ENSG00000072415	.	.	upstream	downstream	duplicates(2),mismatches(6)	.	.	.
AC087280.2	FP236383.3	-/.	+/.	11:6880533	21:8442055	intron	intron	translocation/3'-3'	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000283415	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SSBP3	FP236383.3	-/.	+/.	1:54369217	21:8442055	intron	intron	translocation	0	0	0	4	5962	low	.	.	.	.	.	ENSG00000157216	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
AC087280.2	FP236383.3	-/.	+/.	11:6880533	21:8397825	intron	intron	translocation/3'-3'	0	0	0	4	1126	low	.	.	.	.	.	ENSG00000283415	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RUFY4(18122),CXCR2(16586)	LINC00316(16578),MTCO1P3(17623)	./.	./.	2:218108703	21:45358568	intergenic	intergenic	translocation	0	0	0	193	0	low	.	.	.	.	.	.	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
5_8S_rRNA(2087),FP236383.3(121623)	ATP2B3	./.	+/.	21:8259020	X:153545091	intergenic	intron	translocation	0	0	0	5911	0	low	.	.	.	.	.	.	ENSG00000067842	.	.	upstream	upstream	mismatches(1)	.	.	.
SSBP3	5_8S_rRNA(2087),FP236383.3(121623)	-/.	./.	1:54369217	21:8259020	intron	intergenic	translocation	0	0	0	4	5911	low	.	.	.	.	.	ENSG00000157216	.	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2087),FP236383.3(121623)	SYN3	./.	-/.	21:8259020	22:32535780	intergenic	intron	translocation	0	0	0	5911	4	low	.	.	.	.	.	.	ENSG00000185666	.	.	upstream	upstream	mismatches(1)	.	.	.
TTC13	AC068759.1	-/.	+/.	1:230978370	3:173217193	intron	intron	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000143643	ENSG00000237473	.	.	upstream	upstream	mismatches(1)	.	.	.
LRP1B	RGMB-AS1	-/.	-/.	2:141688297	5:98771438	intron	intron	translocation/5'-5'	0	0	0	0	26	low	.	.	.	.	.	ENSG00000168702	ENSG00000246763	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
CFAP58	AP003390.1(4416),AP001994.1(77265)	+/.	./.	10:104396370	11:119744039	intron	intergenic	translocation	0	0	0	558	1583	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	mismatches(1)	.	.	.
NXF2(6010),AC235565.2(27663)	NXF2(6025),AC235565.2(27648)	./.	./.	X:102332732	X:102332747	intergenic	intergenic	duplication/ITD	0	0	0	31	31	low	.	.	.	.	.	.	.	.	.	upstream	downstream	duplicates(4),low_entropy(3),merge_adjacent	.	.	.
CFAP58	LINC02620	+/.	-/.	10:104396370	10:104479840	intron	intron	duplication/3'-3'	0	0	0	558	1798	low	.	.	.	.	.	ENSG00000120051	ENSG00000225768	.	.	upstream	downstream	mismatches(1)	.	.	.
ESR1	ESR1	+/.	+/.	6:151669146	6:151669189	intron	intron	duplication/ITD	0	0	0	55	55	low	.	.	.	.	.	ENSG00000091831	ENSG00000091831	.	.	upstream	downstream	duplicates(15),low_entropy(2)	.	.	.
MTRNR2L8	FP236383.3	-/.	+/.	11:10508411	21:8397442	5'UTR	intron	translocation/3'-3'	0	0	0	70	0	low	.	.	.	.	.	ENSG00000255823	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
TRERF1	TRERF1	-/.	-/.	6:42262463	6:42262589	intron	intron	duplication	0	0	0	2363	1540	low	.	.	.	.	.	ENSG00000124496	ENSG00000124496	.	.	upstream	downstream	same_gene	.	.	.
U3(104494),GPC1(41726)	CA7	./.	+/.	2:240393937	16:66850329	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000168748	.	.	upstream	upstream	mismatches(1)	.	.	.
ADGRB3(83723),LMBRD1(199528)	FP671120.4	./.	+/.	6:69473229	21:8214787	intergenic	intron	translocation	0	0	0	10	5263	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
U3(104494),GPC1(41726)	ZNF77	./.	-/.	2:240393937	19:2943468	intergenic	intron	translocation	0	0	0	357	0	low	.	.	.	.	.	.	ENSG00000175691	.	.	upstream	downstream	mismatches(1)	.	.	.
TPCN1	FP671120.4	+/.	+/.	12:113295637	21:8214795	intron	intron	translocation/3'-3'	0	0	0	0	5263	low	.	.	.	.	.	ENSG00000186815	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
RUFY4(18117),CXCR2(16591)	VN1R84P(1934),ZNF100(802)	./.	./.	2:218108698	19:21721969	intergenic	intergenic	translocation	0	0	0	0	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC093627.22	PHRF1	-/.	+/.	7:117610	11:589569	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000287883	ENSG00000070047	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
FAT1(23082),AC108865.1(141165)	PHRF1	./.	+/.	4:186749804	11:589570	intergenic	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	.	ENSG00000070047	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
TOGARAM2	AC093627.22	+/.	-/.	2:29042539	7:117610	intron	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	ENSG00000189350	ENSG00000287883	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
AC188616.1(35384),AC226118.1(10803)	TTC17	./.	+/.	7:368556	11:43438946	intergenic	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	.	ENSG00000052841	.	.	upstream	downstream	mismatches(1)	.	.	.
TTLL3	PPP5D1	+/+	-/-	3:9809808	19:46529270	5'UTR	intron	translocation	0	0	0	52	0	low	.	.	.	.	.	ENSG00000214021	ENSG00000230510	.	.	downstream	downstream	duplicates(1),mismatches(1)	.	.	.
CYP3A7	AC010746.2(33572),NPM1P46(33389)	-/-	./+	7:99720484	2:197346312	exon	intergenic	translocation	0	0	0	0	1	low	.	.	Cytochrome_P450(7%)|	.	.	ENSG00000160870	.	.	.	upstream	upstream	mismatches(1)	.	.	.
CYP3A7	PRSS23	-/-	+/+	7:99720484	11:86940606	exon	intron	translocation	0	0	0	0	1	low	.	.	Cytochrome_P450(7%)|	.	.	ENSG00000160870	ENSG00000150687	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8213244	21:8394739	intron	intron	deletion/read-through	0	0	0	3	154	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ACSL3	PHKG2	+/.	+/.	2:222872805	16:30749088	intron	intron	translocation/5'-5'	0	0	0	0	221	low	.	.	.	.	.	ENSG00000123983	ENSG00000156873	.	.	downstream	downstream	mismatches(1)	.	.	.
AP003390.1(4506),AP001994.1(77175)	FRMD5(93118),GOLM2(330)	./.	./.	11:119744129	15:44288389	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
AP003390.1(4502),AP001994.1(77179)	FRMD5(93118),GOLM2(330)	./.	./.	11:119744125	15:44288389	intergenic	intergenic	translocation	0	0	0	3002	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
NOTCH2(12178),RNU6-465P(14017)	NF1	./.	+/.	1:120112957	17:31130977	intergenic	intron	translocation	0	0	0	4	0	low	.	.	.	.	.	.	ENSG00000196712	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02620	FRMD5(93118),GOLM2(330)	-/.	./.	10:104479914	15:44288389	intron	intergenic	translocation	0	0	0	1761	22	low	.	.	.	.	.	ENSG00000225768	.	.	.	downstream	upstream	mismatches	.	.	.
Y_RNA(70087),HNMT(178493)	LINC01220(12969),AF111167.2(112605)	./.	./.	2:137785527	14:75311078	intergenic	intergenic	translocation	0	0	0	2	0	low	.	.	.	.	.	.	.	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
AP003390.1(4495),AP001994.1(77186)	FRMD5(93118),GOLM2(330)	./.	./.	11:119744118	15:44288389	intergenic	intergenic	translocation	0	0	0	3583	22	low	.	.	.	.	.	.	.	.	.	downstream	upstream	mismatches	.	.	.
FP671120.4	Y_RNA(5812),MAP7D2(15742)	+/.	./.	21:8216871	X:19990971	intron	intergenic	translocation	0	0	0	1	21	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC073346.1(93989),AC073137.1(175370)	AP003390.1(4497),AP001994.1(77184)	./.	./.	7:113240319	11:119744120	intergenic	intergenic	translocation	0	0	0	5	3583	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
FP671120.4	Y_RNA(5806),MAP7D2(15748)	+/.	./.	21:8216871	X:19990965	intron	intergenic	translocation	0	0	0	1	21	low	.	.	.	.	.	ENSG00000278996	.	.	.	upstream	downstream	mismatches(1)	.	.	.
AC073346.1(93989),AC073137.1(175370)	AP003390.1(4499),AP001994.1(77182)	./.	./.	7:113240319	11:119744122	intergenic	intergenic	translocation	0	0	0	5	3002	low	.	.	.	.	.	.	.	.	.	downstream	downstream	mismatches	.	.	.
AL627316.1	AL627316.1	-/.	-/.	1:90392799	1:90392812	intron	intron	duplication/ITD	0	0	0	308	185	low	.	.	.	.	.	ENSG00000287372	ENSG00000287372	.	.	upstream	downstream	low_entropy(1),merge_adjacent	.	.	.
CFAP58	PAXBP1(173),C21orf62-AS1(135)	+/.	./.	10:104396374	21:32771965	intron	intergenic	translocation	0	0	0	558	122	low	.	.	.	.	.	ENSG00000120051	.	.	.	upstream	downstream	mismatches	.	.	.
FAM217B(5296),CDH26(4447)	PAXBP1(173),C21orf62-AS1(135)	./.	./.	20:59953976	21:32771965	intergenic	intergenic	translocation	0	0	0	9	122	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches	.	.	.
U3(104497),GPC1(41723)	NDUFA4L2(1285),STAC3(1453)	./.	./.	2:240393940	12:57242000	intergenic	intergenic	translocation	0	0	0	357	0	low	.	.	.	.	.	.	.	.	.	upstream	downstream	mismatches(2)	.	.	.
IPPK	NR5A1	-/.	-/.	9:92634160	9:124505034	intron	intron	inversion/3'-3'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000127080	ENSG00000136931	.	.	downstream	downstream	mismatches(1)	.	.	.
YIF1A	STK35	-/.	+/.	11:66287641	20:2128813	CDS	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000174851	ENSG00000125834	.	.	downstream	downstream	mismatches(1)	.	.	.
SAMD3	TMEM9B	-/.	-/.	6:130180681	11:8950661	intron	intron	translocation	0	0	0	0	0	low	.	.	.	.	.	ENSG00000164483	ENSG00000175348	.	.	upstream	downstream	duplicates(2),mismatches(3)	.	.	.
SPINT1(6175),RHOV(7832)	STK35	./.	+/.	15:40864382	20:2128814	intergenic	intron	translocation	0	0	0	0	3	low	.	.	.	.	.	.	ENSG00000125834	.	.	downstream	downstream	homopolymer(1)	.	.	.