#==================================================
#All numbers are READ count
#==================================================

Total records:                          2461609

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        163323
Unmapped reads:                         2265676
mapq < mapq_cut (non-unique):           25544

mapq >= mapq_cut (unique):              7066
Read-1:                                 3558
Read-2:                                 3508
Reads map to '+':                       3571
Reads map to '-':                       3495
Non-splice reads:                       6518
Splice reads:                           548
Reads mapped in proper pairs:           6436
Proper-paired reads map to different chrom:0