File Info
- Filename
- SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/arriba/SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv
- Size
- 7.3 KB
- Workflow Run
- dev_rna_exp0011_5f1fa793
- Published
- Mar 03, 2026 4:53 PM
Content
View in new tab| #gene1 | gene2 | strand1(gene/fusion) | strand2(gene/fusion) | breakpoint1 | breakpoint2 | site1 | site2 | type | split_reads1 | split_reads2 | discordant_mates | coverage1 | coverage2 | confidence | reading_frame | tags | retained_protein_domains | closest_genomic_breakpoint1 | closest_genomic_breakpoint2 | gene_id1 | gene_id2 | transcript_id1 | transcript_id2 | direction1 | direction2 | filters | fusion_transcript | peptide_sequence | read_identifiers |
| PTMS | RAMP3(65695),AC073968.2(16684) | +/+ | ./+ | 12:6769999 | 7:45251997 | CDS/splice-site | intergenic | translocation | 5 | 0 | 0 | 17383 | 112 | medium | out-of-frame | . | Prothymosin/parathymosin_family(66%)| | . | . | ENSG00000159335 | . | ENST00000309083 | . | downstream | upstream | duplicates(9) | GGgGAAGGCAAGCCGGAAAGAGCGAAAGAAAGAAGTGGTGGAG___GAGGAGGAGAACGGGGCTGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGATGAAGGGGAAGAAGAAG|ATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGG | gKASRKERKKEVVEEEENGAEEEEEETAEDGEEEDEGEEE|dkerlkkvkgt | LH00166:238:23LG7FLT4:5:1181:21128:21906,LH00166:238:23LG7FLT4:5:1370:24744:18473,LH00166:238:23LG7FLT4:5:2249:11598:5036,LH00166:238:23LG7FLT4:5:2485:43117:22943,LH00166:238:23LG7FLT4:6:2451:12520:4083,LH00166:238:23LG7FLT4:7:1315:10190:22887,LH00166:238:23LG7FLT4:7:1388:12245:18235,LH00166:238:23LG7FLT4:7:1422:51134:23938,LH00166:238:23LG7FLT4:7:1478:24364:10108,LH00166:238:23LG7FLT4:7:2181:29477:14956,LH00166:238:23LG7FLT4:7:2344:26362:27581,LH00166:238:23LG7FLT4:7:2387:25448:29669,LH00166:238:23LG7FLT4:8:1343:44484:13177 |
| MCAT | LINC02193 | -/- | +/+ | 22:43141162 | 16:90222244 | CDS/splice-site | exon/splice-site | translocation | 0 | 2 | 0 | 91 | 8 | medium | out-of-frame | . | Acyl_transferase_domain(39%)| | . | . | ENSG00000100294 | ENSG00000260923 | ENST00000290429 | ENST00000665776 | upstream | upstream | duplicates(6) | GGAGAGTTTGCAGCCCTAGTGTTTGCCGGAGCCATGGAATTTGCTGAAG|GAACAGTAAGAGGACCTTGTGCATGAATAATTTGTTTCCACAtTGCAGAGTGG___CAGAAGAATCCCAGACTTCTTAGAGAACCCAGTGACTTTTTGCACCTTAAATCTGTG | GEFAALVFAGAMEFAE|gtvrgpca* | LH00166:238:23LG7FLT4:5:2342:41264:16035,LH00166:238:23LG7FLT4:5:2367:50519:20323,LH00166:238:23LG7FLT4:5:2480:41935:8090,LH00166:238:23LG7FLT4:6:1493:31920:2569,LH00166:238:23LG7FLT4:7:1362:2586:6745,LH00166:238:23LG7FLT4:7:2284:19000:16848,LH00166:238:23LG7FLT4:8:1134:28911:8735,LH00166:238:23LG7FLT4:8:2320:43804:12784 |
| RNF168 | RNF168 | -/- | -/- | 3:196487455 | 3:196487499 | CDS | CDS | duplication/ITD | 5 | 5 | 0 | 398 | 398 | low | in-frame | . | Prokaryotic_RING_finger_family_4(100%)| | . | . | ENSG00000163961 | ENSG00000163961 | ENST00000318037 | ENST00000318037 | upstream | downstream | duplicates(28) | CGACGGGCCA___...AGAAAACAAAGCCAGTGAAGAATACATACAGAGGTTGTTGGCAGAGGAGGAAGAAGAGGAAAAAAGACAGGCAGAAAAAAGGCGAAGAGCGA|AGGAAGAAGAGGAAAAAAGACAGGCAGAAAAAAGGCGAAGAGCGAT | ENKASEEYIQRLLAEEEEEEKRQAEKRRRA|kEEEEKRQAEKRRRA | LH00166:238:23LG7FLT4:5:2496:38384:7179,LH00166:238:23LG7FLT4:6:1243:23612:3844,LH00166:238:23LG7FLT4:6:1405:46514:21262,LH00166:238:23LG7FLT4:6:2195:1777:5092,LH00166:238:23LG7FLT4:6:2222:33959:4447,LH00166:238:23LG7FLT4:7:2107:36442:14802,LH00166:238:23LG7FLT4:8:1108:29364:29361,LH00166:238:23LG7FLT4:8:1310:2756:25704,LH00166:238:23LG7FLT4:8:1319:1243:26418,LH00166:238:23LG7FLT4:8:2266:25618:1098,LH00166:238:23LG7FLT4:5:1104:6946:23546,LH00166:238:23LG7FLT4:5:1237:23442:4783,LH00166:238:23LG7FLT4:6:1139:35981:8483,LH00166:238:23LG7FLT4:6:2341:42372:27315,LH00166:238:23LG7FLT4:7:1268:30658:26166,LH00166:238:23LG7FLT4:7:2448:41167:21892,LH00166:238:23LG7FLT4:5:1213:41507:23294,LH00166:238:23LG7FLT4:5:2454:15206:7642,LH00166:238:23LG7FLT4:6:2122:26904:13443,LH00166:238:23LG7FLT4:5:2496:38384:7179,LH00166:238:23LG7FLT4:6:1243:23612:3844,LH00166:238:23LG7FLT4:6:1405:46514:21262,LH00166:238:23LG7FLT4:6:2195:1777:5092,LH00166:238:23LG7FLT4:6:2222:33959:4447,LH00166:238:23LG7FLT4:7:2107:36442:14802,LH00166:238:23LG7FLT4:8:1108:29364:29361,LH00166:238:23LG7FLT4:8:1310:2756:25704,LH00166:238:23LG7FLT4:8:1319:1243:26418,LH00166:238:23LG7FLT4:8:2266:25618:1098,LH00166:238:23LG7FLT4:5:1104:6946:23546,LH00166:238:23LG7FLT4:5:1237:23442:4783,LH00166:238:23LG7FLT4:6:1139:35981:8483,LH00166:238:23LG7FLT4:6:2341:42372:27315,LH00166:238:23LG7FLT4:7:1268:30658:26166,LH00166:238:23LG7FLT4:7:2448:41167:21892,LH00166:238:23LG7FLT4:5:1213:41507:23294,LH00166:238:23LG7FLT4:5:2454:15206:7642,LH00166:238:23LG7FLT4:6:2122:26904:13443 |
| WFS1 | LINGO2 | +/+ | -/+ | 4:6301313 | 9:28355293 | CDS | intron | translocation/5'-5' | 3 | 0 | 0 | 900 | 0 | low | out-of-frame | . | . | . | . | ENSG00000109501 | ENSG00000174482 | ENST00000226760 | . | downstream | upstream | duplicates(3),mismatches(1) | ATCGCTGCTGCCCTCCATGCCCTTGAATTGGCCCTACCTGAAGGTCCTTGGCCAGACCTTCATCACCGTGCCTGTCGGCCACCTGGTCGTCCTCAACGTCAGCGTCCCGTGCCTG|CTCTATGTCTCTCTCTCTCTCTCTCTCTCTC | SLLPSMPLNWPYLKVLGQTFITVPVGHLVVLNVSVPCL|lyvslslsls | LH00166:238:23LG7FLT4:5:1366:36248:11299,LH00166:238:23LG7FLT4:6:1137:11007:25367,LH00166:238:23LG7FLT4:6:1315:41377:13933,LH00166:238:23LG7FLT4:6:1315:41385:13947,LH00166:238:23LG7FLT4:8:1108:41183:12672,LH00166:238:23LG7FLT4:8:1249:31354:21066,LH00166:238:23LG7FLT4:8:1336:32041:9870 |
| ADPGK | NEO1 | -/- | +/+ | 15:72771783 | 15:73116540 | CDS/splice-site | CDS/splice-site | inversion | 0 | 2 | 0 | 113 | 623 | low | out-of-frame | . | ADP-specific_Phosphofructokinase/Glucokinase_conserved_region(24%)|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Neogenin_C-terminus(100%) | . | . | ENSG00000159322 | ENSG00000067141 | ENST00000311669 | ENST00000339362 | upstream | upstream | duplicates(5) | CAGAAATTTGCAGCCAACTCAGATTTAAAG|GAGCCAGCATTCGAACGTTCACTCCATTTTATTTTCTGGTGGAGCCGGTGGATACACTCTCAGTTAGAGGCTCTTCTGTTATATTAAACTGTTCAGCATATTCTGAGC | QKFAANSDLK|epaferslhfifwwsrwihsqleallly* | LH00166:238:23LG7FLT4:5:1334:30092:2289,LH00166:238:23LG7FLT4:5:2179:43392:8539,LH00166:238:23LG7FLT4:6:1164:37073:8609,LH00166:238:23LG7FLT4:7:1278:42202:29599,LH00166:238:23LG7FLT4:7:2350:45455:2079,LH00166:238:23LG7FLT4:8:1492:29161:19426,LH00166:238:23LG7FLT4:8:2205:18879:19468 |
| SBNO2 | GNA11 | -/- | +/+ | 19:1147309 | 19:3110149 | CDS/splice-site | CDS/splice-site | inversion | 1 | 0 | 0 | 1816 | 598 | low | out-of-frame | . | |G-protein_alpha_subunit(91%) | . | . | ENSG00000064932 | ENSG00000088256 | ENST00000361757 | ENST00000078429 | upstream | upstream | duplicates(3) | GCTATGCCCCCGTGGCCACCGCCTCCAGCTTGCCACCAAAGACCTGCGACTTTGCTCAG|GCACGGGCGAGAGCGGGAAGAGCACGTTCA | YAPVATASSLPPKTCDFAQ|araragrar | LH00166:238:23LG7FLT4:6:1490:11355:11145,LH00166:238:23LG7FLT4:6:2281:49435:1378,LH00166:238:23LG7FLT4:7:1320:24332:15741,LH00166:238:23LG7FLT4:7:1489:22309:15461 |
| SBNO2 | GNA11 | -/- | +/+ | 19:1174172 | 19:3110149 | 5'UTR/splice-site | CDS/splice-site | inversion | 0 | 1 | 0 | 98 | 598 | low | . | . | |G-protein_alpha_subunit(91%) | . | . | ENSG00000064932 | ENSG00000088256 | ENST00000361757 | ENST00000078429 | upstream | upstream | duplicates(6) | GAAACAGGCGCCGCGGGCTCCGCGCCCGGCCGGACCCGGGCCCGAG|GCACGGGCGAGAGCGGGAAGAGCACGTTCATCAAGCAGATGCGCATCATCCACGGCGCCGGCTACTCGGAGGAGGACAAGCGCGGCTTCACCAAGCTCGTCTACCAGAACATCTTCA | . | LH00166:238:23LG7FLT4:5:1268:43869:3004,LH00166:238:23LG7FLT4:5:2178:23086:27932,LH00166:238:23LG7FLT4:6:1203:6841:13023,LH00166:238:23LG7FLT4:6:1223:49726:13849,LH00166:238:23LG7FLT4:8:1157:45778:7151,LH00166:238:23LG7FLT4:8:1358:21112:1364,LH00166:238:23LG7FLT4:8:2460:45908:16736 |
| LINC00486 | AKT2 | +/+ | -/- | 2:32916559 | 19:40256964 | intron | CDS/splice-site | translocation | 0 | 0 | 0 | 65535 | 3871 | low | . | . | |PH_domain(60%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) | . | . | ENSG00000230876 | ENSG00000105221 | . | ENST00000424901 | downstream | downstream | inconsistently_clipped(1) | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGG|ATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAG___AATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATACGCTGCCTGCAGTGGACCACAGTCATCG | . | LH00166:238:23LG7FLT4:5:1198:12472:19608 |
9 rows