File Info
- Filename
- LungN_FFPE_L03_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/arriba/LungN_FFPE_L03_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv
- Size
- 8.5 KB
- Workflow Run
- dev_rna_exp0011_5f1fa793
- Published
- Mar 03, 2026 4:53 PM
Content
View in new tab| #gene1 | gene2 | strand1(gene/fusion) | strand2(gene/fusion) | breakpoint1 | breakpoint2 | site1 | site2 | type | split_reads1 | split_reads2 | discordant_mates | coverage1 | coverage2 | confidence | reading_frame | tags | retained_protein_domains | closest_genomic_breakpoint1 | closest_genomic_breakpoint2 | gene_id1 | gene_id2 | transcript_id1 | transcript_id2 | direction1 | direction2 | filters | fusion_transcript | peptide_sequence | read_identifiers |
| AP003049.2 | FOXO6 | -/- | +/+ | 11:109422146 | 1:41382204 | intron | CDS/splice-site | translocation | 0 | 4 | 0 | 0 | 210 | medium | . | . | . | . | . | ENSG00000255028 | ENSG00000204060 | . | ENST00000641094 | upstream | upstream | duplicates(6) | CCGCGCTGCTGCCGCCGCCGCCGCC|CGCGCCCAGGCCCGGCCCGGTGCTGGGTGCGCCGGGGGAGCTGGCGCTGGCGGGCGCAGCCGCCGCCTACCCCGGCAAAGGGGCGGCCCCGTACGCGCCGCCCGCGCCCTCGCGCAGTGtCTTAG | . | LH00166:238:23LG7FLT4:5:1331:33959:6297,LH00166:238:23LG7FLT4:5:1470:38910:3242,LH00166:238:23LG7FLT4:5:2210:33562:1575,LH00166:238:23LG7FLT4:6:2130:39330:12770,LH00166:238:23LG7FLT4:7:1171:36450:29669,LH00166:238:23LG7FLT4:7:1259:25683:12560,LH00166:238:23LG7FLT4:7:2138:13143:19650,LH00166:238:23LG7FLT4:8:1350:13022:9435,LH00166:238:23LG7FLT4:8:1368:21193:2681,LH00166:238:23LG7FLT4:8:2386:12811:11089 |
| AGAP3 | HOXD11 | +/+ | +/+ | 7:151086814 | 2:176107588 | CDS | CDS | translocation | 5 | 0 | 0 | 310 | 100 | low | in-frame | . | |Homeodomain(100%),Protein_of_unknown_function_(DUF3528)(57%) | . | . | ENSG00000133612 | ENSG00000128713 | ENST00000397238 | ENST00000249504 | downstream | upstream | duplicates(28),low_entropy(1),mismatches(5) | CGCGCCGCCCCGGGCCCGCCTCGGGCCCCACGGCTCCGAAGCCATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCG|GCGGCGGCGGCGGCAGCGCGGGGGGCGGC | MNFQAGGGQSPQQQQSLAAPGGGG|gGGGGSAGG | LH00166:238:23LG7FLT4:5:1182:44791:17997,LH00166:238:23LG7FLT4:5:1223:28344:25522,LH00166:238:23LG7FLT4:6:1135:26386:8146,LH00166:238:23LG7FLT4:6:1219:28385:5974,LH00166:238:23LG7FLT4:7:1354:38910:11117,LH00166:238:23LG7FLT4:7:2230:35075:17563,LH00166:238:23LG7FLT4:7:2480:6161:8174,LH00166:238:23LG7FLT4:5:1236:34921:27105,LH00166:238:23LG7FLT4:5:1257:50446:4951,LH00166:238:23LG7FLT4:5:1279:27268:27329,LH00166:238:23LG7FLT4:5:2110:30448:10136,LH00166:238:23LG7FLT4:5:2124:38521:28268,LH00166:238:23LG7FLT4:5:2185:48521:14003,LH00166:238:23LG7FLT4:5:2252:30213:16035,LH00166:238:23LG7FLT4:5:2328:50567:24415,LH00166:238:23LG7FLT4:5:2469:7545:17717,LH00166:238:23LG7FLT4:5:2486:20667:19734,LH00166:238:23LG7FLT4:6:1161:35925:27105,LH00166:238:23LG7FLT4:6:1296:46862:10290,LH00166:238:23LG7FLT4:6:1394:36159:9379,LH00166:238:23LG7FLT4:6:2122:32502:3522,LH00166:238:23LG7FLT4:6:2202:11274:8455,LH00166:238:23LG7FLT4:6:2340:17787:17156,LH00166:238:23LG7FLT4:6:2367:27187:14746,LH00166:238:23LG7FLT4:7:1287:35641:15601,LH00166:238:23LG7FLT4:7:1309:4899:20337,LH00166:238:23LG7FLT4:7:1331:46450:19692,LH00166:238:23LG7FLT4:7:1452:47898:2191,LH00166:238:23LG7FLT4:7:2248:3629:7432,LH00166:238:23LG7FLT4:7:2265:46709:2625,LH00166:238:23LG7FLT4:7:2335:31378:18445,LH00166:238:23LG7FLT4:7:2390:26297:19062,LH00166:238:23LG7FLT4:7:2461:51457:16988,LH00166:238:23LG7FLT4:8:1103:17633:12350,LH00166:238:23LG7FLT4:8:1105:28741:9814,LH00166:238:23LG7FLT4:8:1261:20732:13093,LH00166:238:23LG7FLT4:8:1455:44306:4181,LH00166:238:23LG7FLT4:8:2184:44128:22425,LH00166:238:23LG7FLT4:8:2324:32794:16442 |
| ZHX2 | CARS2 | +/+ | -/- | 8:122781946 | 13:110688018 | 5'UTR/splice-site | CDS/splice-site | translocation | 2 | 0 | 0 | 10 | 199 | low | . | . | |tRNA_synthetases_class_I_(C)_catalytic_domain(78%) | . | . | ENSG00000178764 | ENSG00000134905 | ENST00000314393 | ENST00000257347 | downstream | downstream | . | GGAGTGGGGAGTGGGTGGGGGGAGCCAGCAGAGTTCCATTTTGGAACGCCCGTGCCGCGTCTCCGCGTTCCCAGCCCGGGTCCCCGCGTTCAtAGCCCCAGCGCAG|ATGAATATTTCCCCCGCTTCCCTCGCCAGTCTTTATGAGGAAGACTTCAAGCAGGACATGGCAGCCCTGAAGGT | . | LH00166:238:23LG7FLT4:5:1276:30561:3718,LH00166:238:23LG7FLT4:7:1380:31532:23308 |
| FOXP4 | PLIN5 | +/+ | -/- | 6:41578081 | 19:4531822 | CDS/splice-site | CDS/splice-site | translocation | 2 | 0 | 0 | 305 | 257 | low | in-frame | . | |Perilipin_family(98%) | . | . | ENSG00000137166 | ENSG00000214456 | ENST00000373063 | ENST00000381848 | downstream | downstream | duplicates(2) | AGGCTCTCCAAGTGGCCCGGCAGTTCCTGCTGCAGCAGGCCTCAGGCCTGAGCTCCCCAGGGAACAATGACAGCAAACAGTCTGCCTCTGCTGTGCAG|AACGTGGTGCAGCGTGTGGTGGCTCTGCCCCTGGTCAGGGCCACGTGCACCGCGGTCTGCGATGTTTACAGTGCAGCCAAGGACAGGCACCC | ALQVARQFLLQQASGLSSPGNNDSKQSASAVQ|NVVQRVVALPLVRATCTAVCDVYSAAKDRH | LH00166:238:23LG7FLT4:5:2333:44468:29235,LH00166:238:23LG7FLT4:6:1130:18588:3494,LH00166:238:23LG7FLT4:6:1222:6461:13681,LH00166:238:23LG7FLT4:8:2455:40026:15040 |
| FOXP4 | AC011498.4 | +/+ | -/- | 6:41578081 | 19:4531822 | CDS/splice-site | CDS/splice-site | translocation | 2 | 0 | 0 | 305 | 257 | low | out-of-frame | . | . | . | . | ENSG00000137166 | ENSG00000267385 | ENST00000373063 | ENST00000586020 | downstream | downstream | duplicates(2) | AGGCTCTCCAAGTGGCCCGGCAGTTCCTGCTGCAGCAGGCCTCAGGCCTGAGCTCCCCAGGGAACAATGACAGCAAACAGTCTGCCTCTGCTGTGCAG|AACGTGGTGCAGCGTGTGGTGGCTCTGCCCCTGGTCAGGGCCACGTGCACCGCGGTCTGCGATGTTTACAGTGCAGCCAAGGACAGGCACCC | ALQVARQFLLQQASGLSSPGNNDSKQSASAVQ|nvvqrvvalplvratctavcdvysaakdrh | LH00166:238:23LG7FLT4:5:2333:44468:29235,LH00166:238:23LG7FLT4:6:1130:18588:3494,LH00166:238:23LG7FLT4:6:1222:6461:13681,LH00166:238:23LG7FLT4:8:2455:40026:15040 |
| ARMCX3 | FOXN3 | +/+ | -/- | X:101623276 | 14:89412490 | 5'UTR/splice-site | 5'UTR/splice-site | translocation | 0 | 2 | 0 | 1 | 924 | low | . | . | |Forkhead_domain(100%) | . | . | ENSG00000102401 | ENSG00000053254 | ENST00000341189 | ENST00000345097 | downstream | downstream | duplicates(1) | GTTGTTCCCGTCTGAGTACCAGCTCCCCACTGCCCTGAGGGCGGGCCGGCCTGCGGCGGAGGGAAAAAGGAAGAGGAGAAGGAAATTGTCCCGAATCCCTGCAG|GAGCCTTCACGTAAATGGGTCCAGTCATGCCTCCCAGTAAGAAGCCAGAAAGCTCAGGAATTAGTGTCTCtAGTGGACTGAGTCAGTGTTAtGGGGGCAGCGGTTTCTCCAAG | . | LH00166:238:23LG7FLT4:5:2203:46474:3901,LH00166:238:23LG7FLT4:5:2316:27948:22088,LH00166:238:23LG7FLT4:6:1120:8928:28576 |
| NFIC | NTNG2 | +/+ | +/+ | 19:3359685 | 9:132166349 | CDS/splice-site | 5'UTR/splice-site | translocation | 2 | 0 | 0 | 2237 | 0 | low | out-of-frame | . | |Laminin_EGF_domain(100%),Laminin_N-terminal_(Domain_VI)(100%) | . | . | ENSG00000141905 | ENSG00000196358 | ENST00000589123 | ENST00000393229 | downstream | upstream | duplicates(7) | GCGGCCCCCCCCTCGCCGGGGACCGAGCGCGCTCGCTCCGGCGCCGGCCTCGCCTCCTCGCAGCAGCGCCATG|GCTGGAGGGTTGTTTTGCCGTTGTGTTGAGCACGTCACCCA | M|agglfcrcvehvt | LH00166:238:23LG7FLT4:5:2141:21023:23181,LH00166:238:23LG7FLT4:5:2386:38311:1981,LH00166:238:23LG7FLT4:6:1353:25699:11944,LH00166:238:23LG7FLT4:6:2112:10231:9309,LH00166:238:23LG7FLT4:6:2360:48585:9604,LH00166:238:23LG7FLT4:6:2465:9551:16652,LH00166:238:23LG7FLT4:7:1240:12124:21976,LH00166:238:23LG7FLT4:8:1201:32341:6213,LH00166:238:23LG7FLT4:8:2103:3694:24779 |
| EFCAB12 | MBD4 | -/- | -/- | 3:129428440 | 3:129437950 | CDS/splice-site | CDS/splice-site | duplication | 2 | 0 | 0 | 478 | 789 | low | out-of-frame | . | |Methyl-CpG_binding_domain(100%) | . | . | ENSG00000172771 | ENSG00000129071 | ENST00000326085 | ENST00000393278 | upstream | downstream | duplicates(2) | TTCACACACGCCCTTCAGCACCCCCTCCCAGCACCACGACCATGGACGACGACTATGAAGCGTACCACAGTCTGTTCTTGTCGCTGCTCG|CAAAGAAGATGTTGCTATGGAATTGGAAAGAGTGGGAGAAGATGAG | MDDDYEAYHSLFLSLL|akkmllwnwkewekm | LH00166:238:23LG7FLT4:6:1146:12876:8651,LH00166:238:23LG7FLT4:6:1167:7868:20323,LH00166:238:23LG7FLT4:6:1493:43650:20449,LH00166:238:23LG7FLT4:7:2476:29995:15685 |
| MAEA | CTBP1 | +/+ | -/- | 4:1315600 | 4:1238337 | CDS/splice-site | CDS/splice-site | inversion | 1 | 1 | 0 | 504 | 2698 | low | out-of-frame | . | CTLH/CRA_C-terminal_to_LisH_motif_domain(0%)|D-isomer_specific_2-hydroxyacid_dehydrogenase__NAD_binding_domain(100%),D-isomer_specific_2-hydroxyacid_dehydrogenase__catalytic_domain(100%) | . | . | ENSG00000090316 | ENSG00000159692 | ENST00000303400 | ENST00000290921 | downstream | downstream | duplicates(9) | GCGCCGGATCGAGCACCTCAAAGAGCATAGCAGCGACCAGCCCGCGGCGGCCAGCGTGTGGAAGAGGAAGCGCATGGATCGCATGATGGTGGAGCACCTGCTGCGTTGCGGCTACTACAACACGGCTGTCAAGCTGGCGCGCCAGAGCGGCATCGAG|GCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCCATCC | RRIEHLKEHSSDQPAAASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE|asdlrs* | LH00166:238:23LG7FLT4:5:2280:32122:29347,LH00166:238:23LG7FLT4:5:2312:14988:6283,LH00166:238:23LG7FLT4:5:2445:44063:25479,LH00166:238:23LG7FLT4:6:2397:47170:20883,LH00166:238:23LG7FLT4:8:1158:2917:23125,LH00166:238:23LG7FLT4:8:2283:33635:22803,LH00166:238:23LG7FLT4:5:2278:18644:13989,LH00166:238:23LG7FLT4:5:2493:6307:11117,LH00166:238:23LG7FLT4:6:1478:13175:23574,LH00166:238:23LG7FLT4:7:1443:9664:9113,LH00166:238:23LG7FLT4:7:2225:38238:26180 |
| ARMCX3 | AL137230.2 | +/+ | -/- | X:101623276 | 14:89412490 | 5'UTR/splice-site | exon/splice-site | translocation | 0 | 2 | 0 | 1 | 924 | low | . | . | . | . | . | ENSG00000102401 | ENSG00000259053 | ENST00000341189 | ENST00000555070 | downstream | downstream | duplicates(1) | GTTGTTCCCGTCTGAGTACCAGCTCCCCACTGCCCTGAGGGCGGGCCGGCCTGCGGCGGAGGGAAAAAGGAAGAGGAGAAGGAAATTGTCCCGAATCCCTGCAG|GAGCCTTCACGTAAATGGGTCCAGTCATGCCTCCCAGTAAGAAGCCAGAAAGCTCAGGAATTAGTGTCTCtAGTGGACTGAGTCAGTGTTAtGGGGGCAGCGGTTTCTCCAAG | . | LH00166:238:23LG7FLT4:5:2203:46474:3901,LH00166:238:23LG7FLT4:5:2316:27948:22088,LH00166:238:23LG7FLT4:6:1120:8928:28576 |
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