File Info

Filename
OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/star_for_arriba/OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1.Log.final.out
Size
2.0 KB
Published
Mar 03, 2026 4:54 PM
                                 Started job on |	Mar 04 00:20:11
                             Started mapping on |	Mar 04 00:21:51
                                    Finished on |	Mar 04 00:50:56
       Mapping speed, Million of reads per hour |	203.60

                          Number of input reads |	98688482
                      Average input read length |	235
                                    UNIQUE READS:
                   Uniquely mapped reads number |	93812108
                        Uniquely mapped reads % |	95.06%
                          Average mapped length |	236.02
                       Number of splices: Total |	101675983
            Number of splices: Annotated (sjdb) |	100610902
                       Number of splices: GT/AG |	100599288
                       Number of splices: GC/AG |	668648
                       Number of splices: AT/AC |	77777
               Number of splices: Non-canonical |	330270
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	3398091
             % of reads mapped to multiple loci |	3.44%
        Number of reads mapped to too many loci |	21849
             % of reads mapped to too many loci |	0.02%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	91439
       % of reads unmapped: too many mismatches |	0.09%
            Number of reads unmapped: too short |	723670
                 % of reads unmapped: too short |	0.73%
                Number of reads unmapped: other |	90335
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	1108772
                            % of chimeric reads |	1.12%