File Info
- Filename
- EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/arriba/EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv
- Size
- 4.2 KB
- Workflow Run
- dev_rna_exp0011_5f1fa793
- Published
- Mar 03, 2026 4:56 PM
Content
View in new tab| #gene1 | gene2 | strand1(gene/fusion) | strand2(gene/fusion) | breakpoint1 | breakpoint2 | site1 | site2 | type | split_reads1 | split_reads2 | discordant_mates | coverage1 | coverage2 | confidence | reading_frame | tags | retained_protein_domains | closest_genomic_breakpoint1 | closest_genomic_breakpoint2 | gene_id1 | gene_id2 | transcript_id1 | transcript_id2 | direction1 | direction2 | filters | fusion_transcript | peptide_sequence | read_identifiers |
| AGAP3 | HOXD11 | +/+ | +/+ | 7:151086814 | 2:176107588 | CDS | CDS | translocation | 5 | 0 | 0 | 190 | 176 | low | in-frame | . | |Homeodomain(100%),Protein_of_unknown_function_(DUF3528)(57%) | . | . | ENSG00000133612 | ENSG00000128713 | ENST00000397238 | ENST00000249504 | downstream | upstream | duplicates(50),low_entropy(2),mismappers(2),mismatches(1) | CGGCTCCGAAGCCATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCG|GCGGCGGCGGCGGCAGCGCGGGGGGCGGC | MNFQAGGGQSPQQQQSLAAPGGGG|gGGGGSAGG | LH00166:238:23LG7FLT4:5:1143:11913:23153,LH00166:238:23LG7FLT4:5:1472:28449:23238,LH00166:238:23LG7FLT4:5:1493:7140:1350,LH00166:238:23LG7FLT4:5:2491:44063:22117,LH00166:238:23LG7FLT4:6:1174:21395:7964,LH00166:238:23LG7FLT4:7:2218:41393:24499,LH00166:238:23LG7FLT4:7:2469:5191:1336,LH00166:238:23LG7FLT4:8:1395:27066:7390,LH00166:238:23LG7FLT4:8:1470:46377:23966,LH00166:238:23LG7FLT4:5:1141:32033:11817,LH00166:238:23LG7FLT4:5:1150:6267:15867,LH00166:238:23LG7FLT4:5:1190:47938:17002,LH00166:238:23LG7FLT4:5:1262:40617:2191,LH00166:238:23LG7FLT4:5:1314:29275:11383,LH00166:238:23LG7FLT4:5:1490:21265:6759,LH00166:238:23LG7FLT4:5:2121:41612:10725,LH00166:238:23LG7FLT4:5:2128:20756:3466,LH00166:238:23LG7FLT4:5:2128:26378:19090,LH00166:238:23LG7FLT4:5:2146:19534:21864,LH00166:238:23LG7FLT4:5:2213:28474:23223,LH00166:238:23LG7FLT4:5:2273:39403:6647,LH00166:238:23LG7FLT4:5:2456:51918:12042,LH00166:238:23LG7FLT4:5:2493:5814:14802,LH00166:238:23LG7FLT4:5:2497:26977:22649,LH00166:238:23LG7FLT4:5:2497:32114:21654,LH00166:238:23LG7FLT4:6:1269:40487:21864,LH00166:238:23LG7FLT4:6:1297:43206:8749,LH00166:238:23LG7FLT4:6:1465:12375:16357,LH00166:238:23LG7FLT4:6:2219:10012:23476,LH00166:238:23LG7FLT4:6:2239:15303:18235,LH00166:238:23LG7FLT4:6:2242:30237:2934,LH00166:238:23LG7FLT4:6:2243:24348:11874,LH00166:238:23LG7FLT4:6:2271:46061:28912,LH00166:238:23LG7FLT4:6:2341:14672:8398,LH00166:238:23LG7FLT4:6:2390:35811:13765,LH00166:238:23LG7FLT4:7:1122:27818:10542,LH00166:238:23LG7FLT4:7:1296:38950:22929,LH00166:238:23LG7FLT4:7:1413:43723:23153,LH00166:238:23LG7FLT4:7:2140:34743:27665,LH00166:238:23LG7FLT4:7:2149:22398:3873,LH00166:238:23LG7FLT4:7:2181:31151:12784,LH00166:238:23LG7FLT4:7:2185:29218:23420,LH00166:238:23LG7FLT4:7:2194:18305:24863,LH00166:238:23LG7FLT4:7:2256:36127:15433,LH00166:238:23LG7FLT4:7:2357:24671:6521,LH00166:238:23LG7FLT4:7:2467:32478:2583,LH00166:238:23LG7FLT4:8:1112:29355:10178,LH00166:238:23LG7FLT4:8:1161:24607:7866,LH00166:238:23LG7FLT4:8:1273:36750:29403,LH00166:238:23LG7FLT4:8:1324:15829:1799,LH00166:238:23LG7FLT4:8:2103:30884:22803,LH00166:238:23LG7FLT4:8:2112:12277:8202,LH00166:238:23LG7FLT4:8:2182:38748:20029,LH00166:238:23LG7FLT4:8:2189:22390:15517,LH00166:238:23LG7FLT4:8:2279:20206:19048,LH00166:238:23LG7FLT4:8:2297:14802:21962,LH00166:238:23LG7FLT4:8:2329:22018:17226,LH00166:238:23LG7FLT4:8:2330:16468:13359,LH00166:238:23LG7FLT4:8:2387:10150:4125,LH00166:238:23LG7FLT4:8:2429:17698:13555 |
| ZDHHC1 | ITGA11 | -/- | -/- | 16:67413047 | 15:68432081 | intron | 5'UTR | translocation | 0 | 3 | 0 | 1 | 1371 | low | . | . | |FG-GAP_repeat(100%),Integrin_alpha(100%),von_Willebrand_factor_type_A_domain(100%) | . | . | ENSG00000159714 | ENSG00000137809 | . | ENST00000315757 | upstream | downstream | . | CCTGTCTCTTAAAAAAAAAAAAAATAGGCTGGGTGCAGTGGCTAGGAGGCCGAGGCGGG|GtCGTGCCGCGGGCCATGGACCTGCCCAGGGGCCTGGTGGTGGCCTGGGCGCTCAGCCTGTGGCCAGGTAGGTGCCCACCCTCTGCC | . | LH00166:238:23LG7FLT4:5:2325:33069:8903,LH00166:238:23LG7FLT4:7:1475:24073:13135,LH00166:238:23LG7FLT4:8:1359:41434:22831 |
| LINC00486 | APEX1 | +/+ | +/+ | 2:32916473 | 14:20457062 | intron | CDS/splice-site | translocation | 0 | 0 | 0 | 65535 | 992 | low | . | . | |Endonuclease/Exonuclease/phosphatase_family(56%) | . | . | ENSG00000230876 | ENSG00000100823 | . | ENST00000438886 | downstream | upstream | inconsistently_clipped(1) | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA|TATGTACCTAATGCAGGCCGAGGTCTGGTACGACTGGAGTACCGGCAGCGCTGGGATGAAGCCTTTCGCAAGTTCCTGAAGGGCCTGGCTTCCCGAAAGCCCCTTGTGCTGTGT | . | LH00166:238:23LG7FLT4:7:2457:28433:24611 |
4 rows