#gene1	gene2	strand1(gene/fusion)	strand2(gene/fusion)	breakpoint1	breakpoint2	site1	site2	type	split_reads1	split_reads2	discordant_mates	coverage1	coverage2	confidence	reading_frame	tags	retained_protein_domains	closest_genomic_breakpoint1	closest_genomic_breakpoint2	gene_id1	gene_id2	transcript_id1	transcript_id2	direction1	direction2	filters	fusion_transcript	peptide_sequence	read_identifiers
MON1B	AC106733.1(65533),MON1B(20005)	+/+	./+	16:77191633	16:77170830	CDS/splice-site	intergenic	duplication	17	11	0	1312	15	high	out-of-frame	.	First_Longin_domain_of_FUZ__MON1_and_HPS1(3%)|	.	.	ENSG00000103111	.	ENST00000248248	.	downstream	upstream	duplicates(13)	CCCGGGGGCGCGGAGGACTTGGAGGACACGCAGTTCCCCAGTGAGGAAGCTAGAGAAGGTGGAGGGGTTCACGCGGTCCCGCCGGATCCCGAAGACGAGGGCCTGGAGGAAACAG|GGATGCTGAGCTGCTGCAGGAAGCTCTTGAACATCAAGTTATGCCAGCAGAAAAAGACATCAGATTGGAAGAATGTGG	PGGAEDLEDTQFPSEEAREGGGVHAVPPDPEDEGLEET|gmlsccrkllniklcqqkktsdwknv	LH00166:238:23LG7FLT4:5:1139:8111:4041,LH00166:238:23LG7FLT4:5:1182:21241:24485,LH00166:238:23LG7FLT4:5:1194:25861:7207,LH00166:238:23LG7FLT4:5:1298:17204:22677,LH00166:238:23LG7FLT4:5:1420:24995:29333,LH00166:238:23LG7FLT4:5:1447:43092:23546,LH00166:238:23LG7FLT4:5:2343:28288:14242,LH00166:238:23LG7FLT4:5:2345:23215:23308,LH00166:238:23LG7FLT4:6:1481:13467:14438,LH00166:238:23LG7FLT4:6:2257:4422:27021,LH00166:238:23LG7FLT4:7:1475:45600:29011,LH00166:238:23LG7FLT4:7:2117:39581:11467,LH00166:238:23LG7FLT4:7:2438:42720:29011,LH00166:238:23LG7FLT4:7:2461:46215:22957,LH00166:238:23LG7FLT4:8:2405:20117:25339,LH00166:238:23LG7FLT4:5:1113:7933:26741,LH00166:238:23LG7FLT4:5:1160:43715:13611,LH00166:238:23LG7FLT4:5:2174:23231:24457,LH00166:238:23LG7FLT4:5:2237:19542:7249,LH00166:238:23LG7FLT4:5:2455:42316:6030,LH00166:238:23LG7FLT4:6:1202:27195:10781,LH00166:238:23LG7FLT4:6:1463:7116:2850,LH00166:238:23LG7FLT4:6:1497:34290:16063,LH00166:238:23LG7FLT4:6:2396:1793:12882,LH00166:238:23LG7FLT4:6:2483:35925:29711,LH00166:238:23LG7FLT4:7:1298:12771:21304,LH00166:238:23LG7FLT4:7:1328:26831:27609,LH00166:238:23LG7FLT4:7:1432:6525:9141,LH00166:238:23LG7FLT4:7:1450:1534:11705,LH00166:238:23LG7FLT4:7:1466:27301:14494,LH00166:238:23LG7FLT4:7:2322:17657:18669,LH00166:238:23LG7FLT4:7:2383:8597:20155,LH00166:238:23LG7FLT4:7:2483:23976:22074,LH00166:238:23LG7FLT4:7:2488:24898:26110,LH00166:238:23LG7FLT4:7:2496:9219:4251,LH00166:238:23LG7FLT4:8:1111:41005:3985,LH00166:238:23LG7FLT4:8:1147:7399:20519,LH00166:238:23LG7FLT4:8:1338:15586:6283,LH00166:238:23LG7FLT4:8:1347:41741:26867,LH00166:238:23LG7FLT4:8:1397:25537:29067,LH00166:238:23LG7FLT4:8:1416:16767:22817
OR6J1	SH3D19	-/+	-/-	14:22637117	4:151165696	intron	CDS/splice-site	translocation/3'-3'	6	8	0	21	1937	high	.	.	|SH3_domain(100%),Variant_SH3_domain(100%)	.	.	ENSG00000255804	ENSG00000109686	.	ENST00000604030	downstream	downstream	duplicates(15)	AGGAGCGTCTCTGCCCGGCCGCCCATGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGCCGCAACCCTGTCTGAGAG|ATCCCTTTCAGCTCCCTGCAAAAACAGAACCAATAAAAGAACGAGCAGTTCAACCAGCACCCACCAGGAAGCCCACTGTAATTCGAATTCCAG	.	LH00166:238:23LG7FLT4:5:1123:34428:27904,LH00166:238:23LG7FLT4:5:1361:32786:13597,LH00166:238:23LG7FLT4:5:1361:32802:13597,LH00166:238:23LG7FLT4:5:2367:34387:18641,LH00166:238:23LG7FLT4:5:2454:7601:29473,LH00166:238:23LG7FLT4:5:2482:22714:7053,LH00166:238:23LG7FLT4:6:1226:35229:29515,LH00166:238:23LG7FLT4:6:1279:12480:21808,LH00166:238:23LG7FLT4:6:1411:37073:13877,LH00166:238:23LG7FLT4:6:1476:47210:28016,LH00166:238:23LG7FLT4:6:2230:31329:20659,LH00166:238:23LG7FLT4:6:2280:22317:3648,LH00166:238:23LG7FLT4:6:2373:35771:1196,LH00166:238:23LG7FLT4:6:2456:10538:29683,LH00166:238:23LG7FLT4:6:2462:10328:3060,LH00166:238:23LG7FLT4:7:1250:9486:26572,LH00166:238:23LG7FLT4:7:2154:4196:3312,LH00166:238:23LG7FLT4:7:2225:47550:21066,LH00166:238:23LG7FLT4:8:1214:22649:27511,LH00166:238:23LG7FLT4:8:1424:31151:7460,LH00166:238:23LG7FLT4:8:2286:25108:24541,LH00166:238:23LG7FLT4:8:2398:11477:20295,LH00166:238:23LG7FLT4:5:2220:27883:26152,LH00166:238:23LG7FLT4:5:2242:42041:27441,LH00166:238:23LG7FLT4:6:1147:6186:19062,LH00166:238:23LG7FLT4:6:2295:30164:18978,LH00166:238:23LG7FLT4:6:2478:47873:4083,LH00166:238:23LG7FLT4:7:2106:51967:15208,LH00166:238:23LG7FLT4:8:2282:24170:23223
AGAP3	HOXD11	+/+	+/+	7:151086814	2:176107588	CDS	CDS	translocation	3	0	0	134	19	low	in-frame	.	|Homeodomain(100%),Protein_of_unknown_function_(DUF3528)(57%)	.	.	ENSG00000133612	ENSG00000128713	ENST00000397238	ENST00000249504	downstream	upstream	duplicates(6),low_entropy(2),mismappers(2),mismatches(1)	CTCGGGCCCCACGGCTCCGAAGCCATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCG|GCGGCGGCGGCGGCAGCGCGGGGGGCGGC	MNFQAGGGQSPQQQQSLAAPGGGG|gGGGGSAGG	LH00166:238:23LG7FLT4:6:2316:10732:6983,LH00166:238:23LG7FLT4:8:1237:23806:22117,LH00166:238:23LG7FLT4:5:1438:33344:9688,LH00166:238:23LG7FLT4:5:1492:12310:9576,LH00166:238:23LG7FLT4:5:2452:29889:22901,LH00166:238:23LG7FLT4:6:1226:17868:6171,LH00166:238:23LG7FLT4:6:2247:19057:20813,LH00166:238:23LG7FLT4:6:2305:26977:14073,LH00166:238:23LG7FLT4:7:2458:46304:17058,LH00166:238:23LG7FLT4:8:1122:23539:14368,LH00166:238:23LG7FLT4:8:1204:45260:20071,LH00166:238:23LG7FLT4:8:1355:36143:22383,LH00166:238:23LG7FLT4:8:1480:2691:28450,LH00166:238:23LG7FLT4:8:2393:2966:26040
NOL10	BMPR2	-/-	+/+	2:10644320	2:202464809	CDS/splice-site	CDS/splice-site	inversion	1	1	0	194	1624	low	stop-codon	.	|Activin_types_I_and_II_receptor_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000115761	ENSG00000204217	ENST00000381685	ENST00000374580	upstream	upstream	duplicates(1)	TGGAGCCAGAGCATGAtCTTAATGATGTTTGTCTCTACC--AACTCAG___GCATGCTTCTGACGGCCAATGAAAtCCCCAAGATGGGCATCTATTACATTCCA|CTTCGCAGAATCAAGAACGGCTATGTGCGTTTAAAGATCCGTATCAGCAAGACCTTGGGATAGGTGAGAGTAGAATCTCTCA	.	LH00166:238:23LG7FLT4:7:1138:1550:24765,LH00166:238:23LG7FLT4:6:1105:23231:15293,LH00166:238:23LG7FLT4:8:2378:48132:18796
ZMYND8	RIN3	-/-	+/+	20:47249287	14:92577360	CDS/splice-site	CDS/splice-site	translocation	0	1	0	203	288	low	out-of-frame	.	Bromodomain(100%),PHD-finger(100%),PWWP_domain(100%),Protein_kinase_C-binding_protein_1(76%)|Vacuolar_sorting_protein_9_(VPS9)_domain(100%)	.	.	ENSG00000101040	ENSG00000100599	ENST00000446994	ENST00000216487	upstream	upstream	.	AGCAGGTTCCAGCTGAATCTTGACAAGACCATAGAGAGTTGCAAAGCACAATTAG|ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGTGCTCTGTGTCCACTTTCCTTCTtTGAACGAAAG	SRFQLNLDKTIESCKAQL|dvpgspgqqleaagalcplsffer	LH00166:238:23LG7FLT4:6:1349:5053:27161
RIN3	ZMYND8	+/+	-/-	14:92577477	20:47262428	CDS/splice-site	CDS/splice-site	translocation	0	1	0	197	210	low	in-frame	.	|Protein_kinase_C-binding_protein_1(70%)	.	.	ENSG00000100599	ENSG00000101040	ENST00000216487	ENST00000446994	downstream	downstream	duplicates(4)	CTCGAATACACCATTAAGGAAGAAAAGTCG|c|CTTCACCAGCCTCCACCAAGACGGGACAAGCAGGGAGTTTATCCGGCAGCCCAAAGCCCTTCTCTCCTCAACTGTCAGCTCCT	LEYTIKEEKS|pSPASTKTGQAGSLSGSPKPFSPQLSA	LH00166:238:23LG7FLT4:5:1172:40536:26628,LH00166:238:23LG7FLT4:5:2338:43934:11271,LH00166:238:23LG7FLT4:6:2346:11258:13555,LH00166:238:23LG7FLT4:6:2442:25011:2878,LH00166:238:23LG7FLT4:8:1302:3532:16175