#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	SpliceType	LeftGene	LeftBreakpoint	RightGene	RightBreakpoint	JunctionReads	SpanningFrags	LargeAnchorSupport	FFPM	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	annots	breakpoint_ID	blacklisted	blacklist_reasons	CALL	filter_reason	FILTER	total_reads
STK25--IGH@-ext	32	0	30.21	0.0	INCL_NON_REF_SPLICE	STK25^ENSG00000115694.15	chr2:241495500:-	IGH@-ext^IGH.g@-ext	chr14:105708667:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:23434:19987,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:35383:13471,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:10142:21766,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1161:32260:4755,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:4996:9183,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:7440:20982,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1221:28174:17801,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1221:49645:20099,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1258:4632:27245,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1287:21662:14059,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1290:49160:24190,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1295:21524:3340,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1301:19963:29529,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1331:22341:3382,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1331:32438:23392,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:32494:22117,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1369:8718:28072,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1479:30140:24625,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2105:44516:19594,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2110:19033:18585,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2117:30253:12378,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2122:9850:20225,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2140:3225:28702,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2153:42898:28030,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2313:4543:9828,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1158:51514:28800,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1256:18620:25241,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1325:45034:25704,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2131:24671:24933,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2290:29161:19370,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2312:28110:10234,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2327:25375:25564	.	NO_LDAS	0.4416	TC	1.8892	TC	1.6402	"[""INTERCHROMOSOMAL[chr2--chr14]""]"	chr2:241495500-chr14:105708667	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	32
IGH-@-ext--TNFRSF10B	25	0	22.76	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708665:+	TNFRSF10B^ENSG00000120889.13	chr8:23028497:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:26484:17506,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1135:39088:27539,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1145:33400:24302,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1159:44492:27988,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1193:35285:14172,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1223:36208:23812,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:32219:28086,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1226:38157:2864,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1239:22439:6969,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1336:7893:1280,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1405:6242:12070,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1454:10473:26012,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1485:25076:11201,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2173:5830:14017,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2292:50640:17114,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2347:6299:27357,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2457:34873:17100,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1158:51514:28800,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1402:22972:4139,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2290:29161:19370,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2405:44120:10304,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1268:10603:22369,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1380:4535:17745,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1365:51223:2009,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2298:22107:21220	.	NO_LDAS	0.3327	TG	1.6729	GT	1.6402	"[""INTERCHROMOSOMAL[chr14--chr8]""]"	chr14:105708665-chr8:23028497	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	25
IGH-@-ext--GOLGA8G	19	0	19.0	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708667:+	GOLGA8G^ENSG00000183629.13	chr15:28525914:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:47008:17885,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:41134:19622,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:50915:20869,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1124:42728:9632,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1186:31249:25227,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1249:43141:21696,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1288:3322:5694,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1409:41280:24555,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1433:11331:1883,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1441:43804:5638,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2112:34056:15096,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:12399:3284,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1345:9114:21584,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2361:31621:20911,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2473:3799:15629,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1320:50689:16666,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1492:39662:22369,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1256:40997:19104,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1260:35196:28646	.	NO_LDAS	0.2777	GA	1.6402	GA	1.9086	"[""INTERCHROMOSOMAL[chr14--chr15]""]"	chr14:105708667-chr15:28525914	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	19
PLCXD1--IGH@-ext	18	0	14.66	0.0	INCL_NON_REF_SPLICE	PLCXD1^ENSG00000182378.15	chrX:293089:+	IGH@-ext^IGH.g@-ext	chr14:105708667:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1104:18207:13373,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1119:15174:22243,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:28045:20911,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1212:9770:23980,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1227:16897:25255,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:27422:5540,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1454:16614:19804,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:43545:3480,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:13726:27413,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2138:3362:15937,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2249:45357:7179,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2439:50389:4881,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2464:16816:7151,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2205:26403:12630,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2457:37858:20197,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1215:27713:3158,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1354:16039:3284,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:12925:18852	.	NO_LDAS	0.2143	AT	1.9086	TC	1.6402	"[""INTERCHROMOSOMAL[chrX--chr14]""]"	chrX:293089-chr14:105708667	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	18
TMEM51-AS1--IGH@-ext	16	0	6.07	0.0	INCL_NON_REF_SPLICE	TMEM51-AS1^ENSG00000175147.13	chr1:15114555:-	IGH@-ext^IGH.g@-ext	chr14:105708665:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:28045:20911,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:5110:18291,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1270:32867:17212,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1293:51643:13975,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:27422:5540,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1379:8127:17801,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:43545:3480,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:13726:27413,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2131:11833:7292,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2167:50228:6927,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1223:1146:1701,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1255:13200:24204,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1328:40180:28702,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2457:37858:20197,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1215:27713:3158,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:12925:18852	.	NO_LDAS	0.0887	AT	1.8892	CA	1.6729	"[""INTERCHROMOSOMAL[chr1--chr14]""]"	chr1:15114555-chr14:105708665	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	16
IGH-@-ext--KAZN	16	0	6.07	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708665:+	KAZN^ENSG00000189337.17	chr1:15114555:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:28045:20911,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:5110:18291,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1270:32867:17212,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1293:51643:13975,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:27422:5540,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1379:8127:17801,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:43545:3480,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:13726:27413,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2131:11833:7292,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2167:50228:6927,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1223:1146:1701,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1255:13200:24204,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1328:40180:28702,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2457:37858:20197,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1215:27713:3158,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:12925:18852	.	NO_LDAS	0.0887	TG	1.6729	AT	1.8892	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:105708665-chr1:15114555	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	16
STK25--IGH@-ext	15	0	12.47	0.0	INCL_NON_REF_SPLICE	STK25^ENSG00000115694.15	chr2:241495500:-	IGH@-ext^IGH.g@-ext	chr14:105644792:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1109:5903:3326,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:30140:27763,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:2505:7278,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:14260:27609,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1382:40204:26026,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1413:30318:11537,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1454:18580:1462,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2135:22665:22523,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2277:42809:10809,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:30634:19762,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2457:14381:16890,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1131:5773:11677,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1318:39177:10570,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1409:24129:11860,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2383:26176:28268	.	NO_LDAS	0.1823	TC	1.8892	TG	1.7465	"[""INTERCHROMOSOMAL[chr2--chr14]""]"	chr2:241495500-chr14:105644792	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	15
DHRSX--IGH@-ext	15	0	13.1	0.0	INCL_NON_REF_SPLICE	DHRSX^ENSG00000169084.15	chrX:2266785:-	IGH@-ext^IGH.g@-ext	chr14:105708663:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:51538:17268,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1210:37187:1434,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:20821:2878,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1246:51109:1701,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1279:25448:14536,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:31176:9716,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1397:43618:28296,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1405:6242:12070,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2118:42785:22873,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2214:24081:7460,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2347:6299:27357,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1322:7974:21962,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2212:35261:20939,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1380:4535:17745,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2131:42833:6143	.	NO_LDAS	0.1915	CA	1.6402	GC	1.5546	"[""INTERCHROMOSOMAL[chrY--chr14]""]"	chrX:2266785-chr14:105708663	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	15
C22orf39--IGH@-ext	13	0	12.55	0.0	INCL_NON_REF_SPLICE	C22orf39^ENSG00000242259.9	chr22:19356982:-	IGH@-ext^IGH.g@-ext	chr14:105708666:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1120:2756:5834,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:24283:16498,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1324:17892:25774,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1341:40868:29277,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:5676:26110,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1359:11865:21108,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1401:6655:6395,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2165:3298:28744,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2261:31629:6829,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1252:24485:1210,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2208:38165:27904,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2231:48262:26530,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1106:10271:27763	.	NO_LDAS	0.1835	TC	1.5301	CC	1.7465	"[""INTERCHROMOSOMAL[chr22--chr14]""]"	chr22:19356982-chr14:105708666	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	13
DHRSX--IGH@-ext	12	0	9.3	0.0	INCL_NON_REF_SPLICE	DHRSX^ENSG00000169084.15	chrX:2266788:-	IGH@-ext^IGH.g@-ext	chr14:105644791:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:24032:21444,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1152:16848:25395,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:2505:7278,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1234:14276:17044,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1441:18628:3957,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2270:46344:8048,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:30634:19762,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1131:5773:11677,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1234:13806:26488,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1467:14073:29081,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1104:45778:8777,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2244:26378:27273	.	NO_LDAS	0.1359	TG	1.7465	GC	1.8062	"[""INTERCHROMOSOMAL[chrY--chr14]""]"	chrX:2266788-chr14:105644791	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	12
C22orf39--IGH@-ext	11	0	10.45	0.0	INCL_NON_REF_SPLICE	C22orf39^ENSG00000242259.9	chr22:19356982:-	IGH@-ext^IGH.g@-ext	chr14:105588396:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1121:41418:5764,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:24073:7838,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1192:18701:1392,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1311:24137:1925,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1330:8402:4321,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2295:44743:24835,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2435:25100:12616,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1141:8613:1715,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2231:48262:26530,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1473:19437:10682,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2377:44354:3256	.	NO_LDAS	0.1528	TC	1.5301	CC	1.7465	"[""INTERCHROMOSOMAL[chr22--chr14]""]"	chr22:19356982-chr14:105588396	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	11
IGH-@-ext--Z82206.1	10	0	5.81	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708664:+	Z82206.1^ENSG00000225528.3	chr22:39964584:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1248:22997:29459,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1258:4632:27245,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1440:32810:7782,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:46757:26334,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2105:44516:19594,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2122:9850:20225,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2150:28385:16203,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2234:18046:3985,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2313:4543:9828,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2327:25375:25564	.	NO_LDAS	0.0849	CT	1.5546	GC	1.8323	"[""INTERCHROMOSOMAL[chr14--chr22]""]"	chr14:105708664-chr22:39964584	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	10
IGH-@-ext--TNFRSF10B	10	0	4.72	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105644791:+	TNFRSF10B^ENSG00000120889.13	chr8:23028496:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:2505:7278,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1413:30318:11537,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2141:19809:25872,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2270:46344:8048,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2381:12391:15236,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:30634:19762,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1131:5773:11677,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2383:26176:28268,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2244:26378:27273,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2265:4899:22243	.	NO_LDAS	0.069	GC	1.8062	TG	1.7465	"[""INTERCHROMOSOMAL[chr14--chr8]""]"	chr14:105644791-chr8:23028496	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	10
KRT13--TBCB	9	0	9.0	0.0	INCL_NON_REF_SPLICE	KRT13^ENSG00000171401.15	chr17:41502937:-	TBCB^ENSG00000105254.12	chr19:36115844:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:23183:16301,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:36014:8314,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2153:42356:13079,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2224:14664:25199,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2330:16193:9099,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2488:51344:17352,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1318:37842:10781,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1159:6097:21878,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2328:20723:15741	.	NO_LDAS	0.1316	GT	1.9656	AG	1.6895	"[""INTERCHROMOSOMAL[chr17--chr19]""]"	chr17:41502937-chr19:36115844	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	9
IGH-@-ext--FBXO2	9	0	9.0	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708667:+	FBXO2^ENSG00000116661.11	chr1:11654335:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:49613:6395,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1181:7399:13849,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:23134:9071,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:3548:22117,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1408:42744:7586,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1122:49936:4237,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2216:3370:1182,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2312:33311:27007,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2354:33392:15573	.	NO_LDAS	0.1316	GA	1.6402	GA	1.7819	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:105708667-chr1:11654335	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	9
HLA-C--MUC16	9	0	9.0	0.0	INCL_NON_REF_SPLICE	HLA-C^ENSG00000204525.17	chr6:31269489:-	MUC16^ENSG00000181143.15	chr19:8848985:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1247:3298:14508,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1378:50414:3214,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1414:31669:15587,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1455:40148:19174,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2371:38926:17002,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1113:35196:8917,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1276:13920:19650,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1182:20238:18824,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1224:43189:7600	.	NO_LDAS	0.1316	GT	1.9656	AG	1.8062	"[""GTEx_recurrent_StarF2019"",""INTERCHROMOSOMAL[chr6--chr19]""]"	chr6:31269489-chr19:8848985	False		0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	9
IGH-@-ext--Z82206.1	7	0	2.11	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105644792:+	Z82206.1^ENSG00000225528.3	chr22:39964587:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:30140:27763,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:2505:7278,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:14260:27609,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:49580:15867,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:30634:19762,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1131:5773:11677,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1184:29299:10977	.	NO_LDAS	0.0308	CA	1.7465	TA	1.8062	"[""INTERCHROMOSOMAL[chr14--chr22]""]"	chr14:105644792-chr22:39964587	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	7
IGH-@-ext--SEZ6L2	7	0	7.0	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708666:+	SEZ6L2^ENSG00000174938.14	chr16:29896882:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1240:36863:24807,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:41288:3943,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1271:12099:4503,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1369:8920:21808,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2348:9778:2695,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2358:16767:9982,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2427:2424:26362	.	NO_LDAS	0.1023	GG	1.7465	AG	1.5656	"[""INTERCHROMOSOMAL[chr14--chr16]""]"	chr14:105708666-chr16:29896882	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	7
IGH-@-ext--MICALL2	6	0	6.0	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708664:+	MICALL2^ENSG00000164877.19	chr7:1438317:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:27980:22285,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1136:12739:13233,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1423:9446:7922,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2173:39775:7656,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2231:1591:29011,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2458:7011:16680	.	NO_LDAS	0.0877	CT	1.5546	GC	1.8295	"[""INTERCHROMOSOMAL[chr14--chr7]""]"	chr14:105708664-chr7:1438317	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	6
HLA-A--C12orf40	6	0	6.0	0.0	INCL_NON_REF_SPLICE	HLA-A^ENSG00000206503.13	chr6:29942951:+	C12orf40^ENSG00000180116.15	chr12:39716794:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1151:43642:21108,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1295:5919:9576,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1443:20392:3648,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2192:37664:25662,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1135:47590:24779,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1382:12245:11117	.	NO_LDAS	0.0877	AT	1.5656	AC	1.7056	"[""INTERCHROMOSOMAL[chr6--chr12]""]"	chr6:29942951-chr12:39716794	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	6
KRT1--KRT4	5	0	5.0	0.0	INCL_NON_REF_SPLICE	KRT1^ENSG00000167768.4	chr12:52680030:-	KRT4^ENSG00000170477.13	chr12:52813823:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:22196:4335,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2321:18402:17128,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2477:2699:6241,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2255:21807:18824,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1125:37356:29109	.	YES_LDAS	0.0731	GT	1.2729	AG	1.7819	"[""DGD_PARALOGS"",""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr12:0.13Mb]""]"	chr12:52680030-chr12:52813823	False		0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	5
IGH-@-ext--CD81-AS1	5	0	5.0	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708667:+	CD81-AS1^ENSG00000238184.1	chr11:2329037:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:5967:2457,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1252:13758:18137,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2152:26451:15993,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1107:31823:23560,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1353:45956:28282	.	NO_LDAS	0.0731	GA	1.6402	AC	1.5656	"[""INTERCHROMOSOMAL[chr14--chr11]""]"	chr14:105708667-chr11:2329037	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	5
IGH-@-ext--AC026120.1	5	0	2.5	0.0	INCL_NON_REF_SPLICE	IGH-@-ext^IGH-.g@-ext	chr14:105708667:+	AC026120.1^ENSG00000278399.1	chr12:56985736:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1208:16242:27960,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1334:49807:2023,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1471:3589:17002,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1257:26370:14592,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1309:46927:21696	.	NO_LDAS	0.0365	GA	1.6402	GC	1.8892	"[""INTERCHROMOSOMAL[chr14--chr12]""]"	chr14:105708667-chr12:56985736	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	5
AFF3--HLA-C	4	0	4.0	0.0	INCL_NON_REF_SPLICE	AFF3^ENSG00000144218.20	chr2:100104512:-	HLA-C^ENSG00000204525.17	chr6:31270485:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:49613:23434,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1410:8014:3144,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2423:23628:9197,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1236:42591:4321	.	NO_LDAS	0.0585	GC	1.6895	AG	1.2867	"[""INTERCHROMOSOMAL[chr2--chr6]""]"	chr2:100104512-chr6:31270485	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	4
ZNF720--ZNF254	3	0	2.67	0.0	ONLY_REF_SPLICE	ZNF720^ENSG00000197302.10	chr16:31723353:+	ZNF254^ENSG00000213096.11	chr19:24105940:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1101:45115:7011,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1485:21201:23125,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2312:17245:12126	.	YES_LDAS	0.039	GT	1.8892	AG	1.8892	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr16--chr19]""]"	chr16:31723353-chr19:24105940	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	3
SETD2--EP300	3	0	3.0	0.0	INCL_NON_REF_SPLICE	SETD2^ENSG00000181555.21	chr3:47164012:-	EP300^ENSG00000100393.14	chr22:41092609:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:4996:28548,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2322:10732:15110,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1467:43966:23854	.	YES_LDAS	0.0439	GT	0.971	AG	1.5058	"[""INTERCHROMOSOMAL[chr3--chr22]""]"	chr3:47164012-chr22:41092609	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	3
PNMA6E--ZNF598	3	0	3.0	0.0	INCL_NON_REF_SPLICE	PNMA6E^ENSG00000214897.5	chrX:153397731:-	ZNF598^ENSG00000167962.14	chr16:1999895:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1382:44047:2023,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1459:26459:12252,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2387:5247:9365	.	NO_LDAS	0.0439	GT	1.7056	AG	1.231	"[""INTERCHROMOSOMAL[chrX--chr16]""]"	chrX:153397731-chr16:1999895	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	3
MRPS18A--PDC-AS1	3	0	3.0	0.0	INCL_NON_REF_SPLICE	MRPS18A^ENSG00000096080.12	chr6:43687668:-	PDC-AS1^ENSG00000229739.4	chr1:186459293:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2168:44557:17366,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2229:36434:6213,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2260:28773:21724	.	YES_LDAS	0.0439	GT	1.7232	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:43687668-chr1:186459293	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	3
ZNF720--AC098826.1	2	0	0.22	0.0	ONLY_REF_SPLICE	ZNF720^ENSG00000197302.10	chr16:31723353:+	AC098826.1^ENSG00000225594.1	chr2:132087289:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1485:21201:23125,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1191:21371:25550	.	YES_LDAS	0.0032	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr16--chr2]""]"	chr16:31723353-chr2:132087289	False		0	Read count too low: 2 < 5	FAIL	2
TBC1D27P--RPS4X	2	0	2.0	0.0	INCL_NON_REF_SPLICE	TBC1D27P^ENSG00000128438.10	chr17:16923225:-	RPS4X^ENSG00000198034.11	chrX:72272711:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1291:11379:14466,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2169:7553:28128	.	NO_LDAS	0.0292	GC	1.8892	AG	1.3383	"[""INTERCHROMOSOMAL[chr17--chrX]""]"	chr17:16923225-chrX:72272711	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
STUM--KCTD12	2	0	1.22	0.0	INCL_NON_REF_SPLICE	STUM^ENSG00000203685.10	chr1:226548952:+	KCTD12^ENSG00000178695.6	chr13:76886307:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:39686:25942,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1369:27058:17829	.	NO_LDAS	0.0178	GT	0.9183	AG	1.4256	"[""INTERCHROMOSOMAL[chr1--chr13]""]"	chr1:226548952-chr13:76886307	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
SPNS2--PARD3B	2	0	1.0	0.0	INCL_NON_REF_SPLICE	SPNS2^ENSG00000183018.9	chr17:4499153:+	PARD3B^ENSG00000116117.18	chr2:204546125:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:6008:3704,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1227:28749:5876	.	NO_LDAS	0.0146	GT	1.5546	AG	1.3383	"[""INTERCHROMOSOMAL[chr17--chr2]""]"	chr17:4499153-chr2:204546125	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
SHC2--ADGRE2	2	0	1.0	0.0	INCL_NON_REF_SPLICE	SHC2^ENSG00000129946.10	chr19:419719:-	ADGRE2^ENSG00000127507.18	chr19:14774054:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1352:16460:8917,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2148:43602:19804	.	NO_LDAS	0.0146	GT	1.9656	AG	1.5301	"[""INTRACHROMOSOMAL[chr19:14.27Mb]""]"	chr19:419719-chr19:14774054	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
RPL17--RPL17P12	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RPL17^ENSG00000265681.7	chr18:49491405:-	RPL17P12^ENSG00000230559.1	chr2:146194373:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1313:23167:17170,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2148:26904:14760	.	NO_LDAS	0.0292	GT	1.9219	AG	1.8892	"[""TCGA_StarF2019"",""CCLE_StarF2019"",""INTERCHROMOSOMAL[chr18--chr2]""]"	chr18:49491405-chr2:146194373	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	2
RN7SL674P--RN7SL494P	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RN7SL674P^ENSG00000239899.3	chr2:11584878:+	RN7SL494P^ENSG00000241175.3	chr15:50244810:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1218:24607:27567,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2176:31532:2822	.	YES_LDAS	0.0292	GT	1.9086	AG	1.9656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr2--chr15]""]"	chr2:11584878-chr15:50244810	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	2
PRDM8--EIF3J	2	0	2.0	0.0	INCL_NON_REF_SPLICE	PRDM8^ENSG00000152784.16	chr4:80202435:+	EIF3J^ENSG00000104131.13	chr15:44537195:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:12108:20519,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1489:35221:3718	.	NO_LDAS	0.0292	GT	1.1589	AG	1.4716	"[""INTERCHROMOSOMAL[chr4--chr15]""]"	chr4:80202435-chr15:44537195	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
PPM1A--STUM	2	0	1.0	0.0	INCL_NON_REF_SPLICE	PPM1A^ENSG00000100614.18	chr14:60249239:+	STUM^ENSG00000203685.10	chr1:226548932:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:51522:2583,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1310:37632:13443	.	NO_LDAS	0.0146	GT	0.9183	AG	1.231	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:60249239-chr1:226548932	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
POU5F1--TYW1	2	0	2.0	0.0	ONLY_REF_SPLICE	POU5F1^ENSG00000204531.20	chr6:31166534:-	TYW1^ENSG00000198874.13	chr7:67067285:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2214:15327:12896,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2394:24728:5302	.	YES_LDAS	0.0292	GT	1.9329	AG	1.9086	"[""INTERCHROMOSOMAL[chr6--chr7]""]"	chr6:31166534-chr7:67067285	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	2
POLE--ZC3H18	2	0	0.5	0.0	INCL_NON_REF_SPLICE	POLE^ENSG00000177084.18	chr12:132624499:-	ZC3H18^ENSG00000158545.16	chr16:88611291:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2374:37421:7334,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2416:41013:6577	.	NO_LDAS	0.0073	GT	1.6402	AG	1.5058	"[""INTERCHROMOSOMAL[chr12--chr16]""]"	chr12:132624499-chr16:88611291	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
MED13L--UBC	2	0	2.0	0.0	ONLY_REF_SPLICE	MED13L^ENSG00000123066.9	chr12:116277060:-	UBC^ENSG00000150991.15	chr12:124913774:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2119:4341:11215,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1173:41434:25718	.	YES_LDAS	0.0292	GT	1.8323	AG	1.9329	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr12:8.63Mb]""]"	chr12:116277060-chr12:124913774	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	2
LYRM4-AS1--NFATC2	2	0	2.0	0.0	INCL_NON_REF_SPLICE	LYRM4-AS1^ENSG00000272142.4	chr6:5033736:+	NFATC2^ENSG00000101096.20	chr20:51435314:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:19291:6563,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2464:27648:8819	.	NO_LDAS	0.0292	GT	1.8256	AG	1.7232	"[""INTERCHROMOSOMAL[chr6--chr20]""]"	chr6:5033736-chr20:51435314	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
LINC02785--SPRR3	2	0	2.0	0.0	INCL_NON_REF_SPLICE	LINC02785^ENSG00000226822.3	chr1:108075939:+	SPRR3^ENSG00000163209.15	chr1:153003039:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1269:44961:22607,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1142:20424:13961	.	NO_LDAS	0.0292	GT	1.9219	AG	1.9086	"[""INTRACHROMOSOMAL[chr1:44.93Mb]""]"	chr1:108075939-chr1:153003039	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
KRT77--KRT4	2	0	2.0	0.0	ONLY_REF_SPLICE	KRT77^ENSG00000189182.10	chr12:52702892:-	KRT4^ENSG00000170477.13	chr12:52811977:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2416:2715:1645,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2155:26030:12182	.	YES_LDAS	0.0292	GT	1.9329	AG	1.9086	"[""DGD_PARALOGS"",""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr12:0.10Mb]""]"	chr12:52702892-chr12:52811977	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	2
KRT4--RAB3IL1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	KRT4^ENSG00000170477.13	chr12:52813800:-	RAB3IL1^ENSG00000167994.13	chr11:61904607:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2214:48504:8258,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2325:19736:20729	.	NO_LDAS	0.0146	GT	1.4295	AG	1.7819	"[""INTERCHROMOSOMAL[chr12--chr11]""]"	chr12:52813800-chr11:61904607	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
HLA-C--NUMA1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	HLA-C^ENSG00000204525.17	chr6:31269493:-	NUMA1^ENSG00000137497.18	chr11:72013673:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:49241:17633,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1148:40592:18235	.	NO_LDAS	0.0292	GT	1.8256	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr11]""]"	chr6:31269493-chr11:72013673	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	2
HLA-B--ZBTB43	2	0	2.0	0.0	INCL_NON_REF_SPLICE	HLA-B^ENSG00000234745.13	chr6:31354629:-	ZBTB43^ENSG00000169155.10	chr9:126833169:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1450:5441:28170,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2256:35253:17927	.	NO_LDAS	0.0292	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr6--chr9]""]"	chr6:31354629-chr9:126833169	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
HLA-B--HLA-V	2	0	1.0	0.0	ONLY_REF_SPLICE	HLA-B^ENSG00000234745.13	chr6:31357086:-	HLA-V^ENSG00000181126.13	chr6:29792437:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:47623:3564,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1308:12957:8146	.	YES_LDAS	0.0146	GT	1.7056	AG	1.8323	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr6:1.56Mb]""]"	chr6:31357086-chr6:29792437	True	"pair|MHC complexes|HLA-V	HLA-B; pair|recurrent breakpoints"	0	Blacklisted	FAIL	2
GZMM--SRCAP	2	0	2.0	0.0	INCL_NON_REF_SPLICE	GZMM^ENSG00000197540.8	chr19:544126:+	SRCAP^ENSG00000080603.17	chr16:30725836:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2493:18313:5064,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2143:2383:29683	.	YES_LDAS	0.0292	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:544126-chr16:30725836	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
FMNL3--CYBRD1	2	0	0.5	0.0	INCL_NON_REF_SPLICE	FMNL3^ENSG00000161791.14	chr12:49644112:-	CYBRD1^ENSG00000071967.12	chr2:171522488:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1109:43319:10262,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2133:38335:10066	.	NO_LDAS	0.0073	GT	1.8323	AG	1.3996	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:49644112-chr2:171522488	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
FLI1--ETS1	2	0	2.0	0.0	ONLY_REF_SPLICE	FLI1^ENSG00000151702.17	chr11:128694276:+	ETS1^ENSG00000134954.14	chr11:128490576:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1158:13192:27049,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2432:45851:1448	.	YES_LDAS	0.0292	GT	1.9086	AG	1.8256	"[""INTRACHROMOSOMAL[chr11:0.10Mb]"",""LOCAL_INVERSION:+:-:[98977]""]"	chr11:128694276-chr11:128490576	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	2
FAF1--STUM	2	0	1.0	0.0	INCL_NON_REF_SPLICE	FAF1^ENSG00000185104.20	chr1:50959894:-	STUM^ENSG00000203685.10	chr1:226548932:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:51522:2583,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1310:37632:13443	.	NO_LDAS	0.0146	GT	0.9183	AG	1.231	"[""INTRACHROMOSOMAL[chr1:175.59Mb]""]"	chr1:50959894-chr1:226548932	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
COL7A1--COL4A5	2	0	2.0	0.0	INCL_NON_REF_SPLICE	COL7A1^ENSG00000114270.18	chr3:48583938:-	COL4A5^ENSG00000188153.14	chrX:108597453:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1350:38562:25592,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2322:33627:16315	.	NO_LDAS	0.0292	GT	1.7968	AG	1.7056	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr3--chrX]""]"	chr3:48583938-chrX:108597453	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	2
CBX8--RBM25	2	0	2.0	0.0	INCL_NON_REF_SPLICE	CBX8^ENSG00000141570.11	chr17:79795264:-	RBM25^ENSG00000119707.14	chr14:73105901:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1187:35884:26166,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1226:49419:23378	.	NO_LDAS	0.0292	GT	1.3383	AG	0.9968	"[""INTERCHROMOSOMAL[chr17--chr14]""]"	chr17:79795264-chr14:73105901	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
ACTG1P16--ACTBP11	2	0	2.0	0.0	INCL_NON_REF_SPLICE	ACTG1P16^ENSG00000260298.2	chr16:50059046:-	ACTBP11^ENSG00000188460.4	chr1:223864666:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1280:8734:19917,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1362:14260:16764	.	NO_LDAS	0.0292	GT	1.585	AG	1.9219	"[""INTERCHROMOSOMAL[chr16--chr1]""]"	chr16:50059046-chr1:223864666	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
AC078883.1--AC079776.1	2	0	0.67	0.0	INCL_NON_REF_SPLICE	AC078883.1^ENSG00000225205.5	chr2:172512334:-	AC079776.1^ENSG00000217289.3	chr2:129993386:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2191:23142:19987,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2426:30253:3382	.	YES_LDAS	0.0098	GT	1.9219	AG	1.8892	"[""INTRACHROMOSOMAL[chr2:42.49Mb]""]"	chr2:172512334-chr2:129993386	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
AC055716.1--KRT4	2	0	2.0	0.0	ONLY_REF_SPLICE	AC055716.1^ENSG00000257343.1	chr12:52747353:-	KRT4^ENSG00000170477.13	chr12:52807864:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2332:10805:15236,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2441:49508:27792	.	YES_LDAS	0.0292	GT	1.6402	AG	1.9656	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr12:0.06Mb]"",""LOCAL_REARRANGEMENT:-:[58241]""]"	chr12:52747353-chr12:52807864	False		0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	2
ZNF865--ZNF8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF865^ENSG00000261221.4	chr19:55615317:+	ZNF8^ENSG00000278129.2	chr19:58294715:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1303:26572:13793	.	NO_LDAS	0.0146	GC	1.8256	AG	1.8892	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:2.66Mb]""]"	chr19:55615317-chr19:58294715	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF730--ENDOG	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF730^ENSG00000183850.14	chr19:23143980:+	ENDOG^ENSG00000167136.7	chr9:128822628:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1252:26637:24947	.	NO_LDAS	0.0146	GT	1.7819	AG	1.6895	"[""INTERCHROMOSOMAL[chr19--chr9]""]"	chr19:23143980-chr9:128822628	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF718--CARD8	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF718^ENSG00000250312.8	chr4:131505:+	CARD8^ENSG00000105483.18	chr19:48241063:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:45689:5568	.	YES_LDAS	0.0146	GT	1.4566	AG	1.5546	"[""INTERCHROMOSOMAL[chr4--chr19]""]"	chr4:131505-chr19:48241063	False		0	Read count too low: 1 < 5	FAIL	1
ZNF669--ZNF136	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF669^ENSG00000188295.15	chr1:247103939:-	ZNF136^ENSG00000196646.12	chr19:12185785:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2377:50478:20757	.	NO_LDAS	0.0146	GT	1.7232	AG	1.7819	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:247103939-chr19:12185785	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF586--AC005702.5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF586^ENSG00000083828.16	chr19:57769832:+	AC005702.5^ENSG00000287664.1	chr17:60019144:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1161:5393:19987	.	NO_LDAS	0.0146	GC	1.1033	AG	1.7819	"[""INTERCHROMOSOMAL[chr19--chr17]""]"	chr19:57769832-chr17:60019144	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF432--PDIA3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF432^ENSG00000256087.7	chr19:52046854:-	PDIA3^ENSG00000167004.13	chr15:43772027:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2437:46134:4545	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9899	"[""INTERCHROMOSOMAL[chr19--chr15]""]"	chr19:52046854-chr15:43772027	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF418--ZSCAN30	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF418^ENSG00000196724.13	chr19:57926547:-	ZSCAN30^ENSG00000186814.14	chr18:35253758:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2368:23927:27763	.	NO_LDAS	0.0146	GT	1.5219	AG	1.8323	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr19--chr18]""]"	chr19:57926547-chr18:35253758	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF407--ZNF774	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF407^ENSG00000215421.9	chr18:74881119:+	ZNF774^ENSG00000196391.11	chr15:90360943:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2182:23587:25830	.	NO_LDAS	0.0146	GT	1.5656	AG	1.9329	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr18--chr15]""]"	chr18:74881119-chr15:90360943	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF202--PACRGL	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF202^ENSG00000166261.11	chr11:123741538:-	PACRGL^ENSG00000163138.19	chr4:20704466:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1461:23684:20029	.	NO_LDAS	0.0146	GT	1.9656	AG	1.5628	"[""INTERCHROMOSOMAL[chr11--chr4]""]"	chr11:123741538-chr4:20704466	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF195--FCHSD2	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF195^ENSG00000005801.18	chr11:3370975:-	FCHSD2^ENSG00000137478.15	chr11:73083740:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2158:49047:12532	.	NO_LDAS	0.0146	GT	1.8256	AG	1.9219	"[""INTRACHROMOSOMAL[chr11:69.46Mb]""]"	chr11:3370975-chr11:73083740	False		0	Read count too low: 1 < 5	FAIL	1
ZNF185--LINC01808	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF185^ENSG00000147394.18	chrX:152970541:+	LINC01808^ENSG00000237992.3	chr2:19519575:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1121:35601:20043	.	NO_LDAS	0.0146	GT	1.9899	AG	1.4256	"[""INTERCHROMOSOMAL[chrX--chr2]""]"	chrX:152970541-chr2:19519575	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF154--ZNF132	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ZNF154^ENSG00000179909.15	chr19:57708939:-	ZNF132^ENSG00000131849.12	chr19:58437173:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2456:1890:9519	.	YES_LDAS	0.0073	GT	1.8256	AG	1.9656	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:0.72Mb]""]"	chr19:57708939-chr19:58437173	False		0	Excluded annotation pattern: DGD_PARALOGS	FAIL	1
ZNF101--AC008543.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF101^ENSG00000181896.12	chr19:19680340:+	AC008543.2^ENSG00000220949.2	chr19:11759933:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1391:9244:13289	.	YES_LDAS	0.0146	GT	1.8892	AG	1.9329	"[""INTRACHROMOSOMAL[chr19:7.91Mb]""]"	chr19:19680340-chr19:11759933	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZKSCAN5--FASN	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZKSCAN5^ENSG00000196652.12	chr7:99512536:+	FASN^ENSG00000169710.9	chr17:82085802:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2251:11905:9716	.	NO_LDAS	0.0146	GT	1.4256	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr17]""]"	chr7:99512536-chr17:82085802	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZKSCAN1--ZNF655	1	0	1.0	0.0	ONLY_REF_SPLICE	ZKSCAN1^ENSG00000106261.17	chr7:100024307:+	ZNF655^ENSG00000197343.11	chr7:99560533:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1409:49500:1490	.	NO_LDAS	0.0146	GT	1.9899	AG	1.8892	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr7:0.44Mb]""]"	chr7:100024307-chr7:99560533	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZHX2--DCAF5	1	0	1.0	0.0	ONLY_REF_SPLICE	ZHX2^ENSG00000178764.8	chr8:122781946:+	DCAF5^ENSG00000139990.18	chr14:69122360:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1408:32187:7516	.	YES_LDAS	0.0146	GT	1.5301	AG	1.8062	"[""INTERCHROMOSOMAL[chr8--chr14]""]"	chr8:122781946-chr14:69122360	False		0	Read count too low: 1 < 5	FAIL	1
ZFHX4--SGSM2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZFHX4^ENSG00000091656.19	chr8:76851872:+	SGSM2^ENSG00000141258.13	chr17:2373472:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1480:9948:26054	.	NO_LDAS	0.0146	AT	1.8295	AC	1.8892	"[""INTERCHROMOSOMAL[chr8--chr17]""]"	chr8:76851872-chr17:2373472	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZCCHC8--LIG1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZCCHC8^ENSG00000033030.15	chr12:122499302:-	LIG1^ENSG00000105486.14	chr19:48151334:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1112:35399:6157	.	YES_LDAS	0.0146	GT	1.7465	AG	1.5301	"[""INTERCHROMOSOMAL[chr12--chr19]""]"	chr12:122499302-chr19:48151334	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZBTB5--ITPR2	1	0	1.0	0.0	ONLY_REF_SPLICE	ZBTB5^ENSG00000168795.5	chr9:37465215:-	ITPR2^ENSG00000123104.12	chr12:26632059:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2169:7779:20897	.	NO_LDAS	0.0146	GT	1.7819	AG	1.7465	"[""INTERCHROMOSOMAL[chr9--chr12]""]"	chr9:37465215-chr12:26632059	False		0	Read count too low: 1 < 5	FAIL	1
ZBTB20--UNC50	1	0	1.0	0.0	ONLY_REF_SPLICE	ZBTB20^ENSG00000181722.17	chr3:115071219:-	UNC50^ENSG00000115446.12	chr2:98609756:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2179:49694:16624	.	YES_LDAS	0.0146	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr3--chr2]""]"	chr3:115071219-chr2:98609756	False		0	Read count too low: 1 < 5	FAIL	1
YBX1--FYN	1	0	1.0	0.0	ONLY_REF_SPLICE	YBX1^ENSG00000065978.19	chr1:42683466:+	FYN^ENSG00000010810.17	chr6:111720062:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1391:7116:3999	.	NO_LDAS	0.0146	GT	1.9656	AG	1.5656	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:42683466-chr6:111720062	False		0	Read count too low: 1 < 5	FAIL	1
WSB1--S100A3	1	0	1.0	0.0	ONLY_REF_SPLICE	WSB1^ENSG00000109046.15	chr17:27297308:+	S100A3^ENSG00000188015.10	chr1:153548490:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1392:40722:14003	.	NO_LDAS	0.0146	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:27297308-chr1:153548490	False		0	Read count too low: 1 < 5	FAIL	1
WDSUB1--SOS1	1	0	1.0	0.0	ONLY_REF_SPLICE	WDSUB1^ENSG00000196151.11	chr2:159286583:-	SOS1^ENSG00000115904.14	chr2:39067753:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1313:29574:15236	.	YES_LDAS	0.0146	GT	1.5546	AG	1.9219	"[""INTRACHROMOSOMAL[chr2:120.11Mb]""]"	chr2:159286583-chr2:39067753	False		0	Read count too low: 1 < 5	FAIL	1
WDR44--IL13RA1	1	0	1.0	0.0	ONLY_REF_SPLICE	WDR44^ENSG00000131725.14	chrX:118346580:+	IL13RA1^ENSG00000131724.11	chrX:118741017:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1188:29906:9730	.	NO_LDAS	0.0146	GT	1.7056	AG	1.8323	"[""INTRACHROMOSOMAL[chrX:0.28Mb]""]"	chrX:118346580-chrX:118741017	False		0	Read count too low: 1 < 5	FAIL	1
WDPCP--NEMP2	1	0	1.0	0.0	ONLY_REF_SPLICE	WDPCP^ENSG00000143951.16	chr2:63259307:-	NEMP2^ENSG00000189362.12	chr2:190525378:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1253:2262:6801	.	YES_LDAS	0.0146	GT	1.9086	AG	1.8256	"[""INTRACHROMOSOMAL[chr2:126.68Mb]""]"	chr2:63259307-chr2:190525378	False		0	Read count too low: 1 < 5	FAIL	1
VWA5A--RPS19BP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	VWA5A^ENSG00000110002.16	chr11:124136297:+	RPS19BP1^ENSG00000187051.9	chr22:39531638:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1160:51263:24330	.	NO_LDAS	0.0146	GT	1.7968	AG	1.6402	"[""INTERCHROMOSOMAL[chr11--chr22]""]"	chr11:124136297-chr22:39531638	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VTI1A--AL158212.1	1	0	1.0	0.0	ONLY_REF_SPLICE	VTI1A^ENSG00000151532.14	chr10:112668998:+	AL158212.1^ENSG00000225292.2	chr10:112888735:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1230:31240:22355	.	YES_LDAS	0.0146	GT	1.7465	AG	1.8892	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr10:0.07Mb]"",""NEIGHBORS[69991]""]"	chr10:112668998-chr10:112888735	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
VPS26C--TTC3	1	0	1.0	0.0	ONLY_REF_SPLICE	VPS26C^ENSG00000157538.14	chr21:37267238:-	TTC3^ENSG00000182670.13	chr21:37108392:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1120:5369:23812	.	NO_LDAS	0.0146	GT	1.9329	AG	1.9656	"[""INTRACHROMOSOMAL[chr21:0.02Mb]"",""LOCAL_INVERSION:-:+:[20308]""]"	chr21:37267238-chr21:37108392	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
VPS13D--AL161935.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	VPS13D^ENSG00000048707.15	chr1:12327787:+	AL161935.3^ENSG00000286694.1	chr10:31608792:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1446:34185:2794	.	NO_LDAS	0.0146	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr10]""]"	chr1:12327787-chr10:31608792	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VPS13A--DNMT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	VPS13A^ENSG00000197969.14	chr9:77206079:+	DNMT1^ENSG00000130816.17	chr19:10160017:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2369:23539:26614	.	NO_LDAS	0.0146	GT	1.8062	AG	1.9899	"[""INTERCHROMOSOMAL[chr9--chr19]""]"	chr9:77206079-chr19:10160017	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VCPKMT--SOS2	1	0	1.0	0.0	ONLY_REF_SPLICE	VCPKMT^ENSG00000100483.14	chr14:50116080:-	SOS2^ENSG00000100485.12	chr14:50150230:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1223:47145:19580	.	YES_LDAS	0.0146	GT	1.9899	AG	1.6402	"[""INTRACHROMOSOMAL[chr14:0.00Mb]"",""LOCAL_REARRANGEMENT:-:[530]""]"	chr14:50116080-chr14:50150230	False		0	Read count too low: 1 < 5	FAIL	1
VCP--AP1G2	1	0	0.2	0.0	INCL_NON_REF_SPLICE	VCP^ENSG00000165280.18	chr9:35072575:-	AP1G2^ENSG00000213983.12	chr14:23567711:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1195:20238:14900	.	NO_LDAS	0.0029	GC	1.5058	AG	1.5656	"[""INTERCHROMOSOMAL[chr9--chr14]""]"	chr9:35072575-chr14:23567711	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VASP--CSPG4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	VASP^ENSG00000125753.14	chr19:45526972:+	CSPG4^ENSG00000173546.7	chr15:75676607:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2409:24299:8062	.	NO_LDAS	0.0146	GT	1.8295	AG	1.7465	"[""INTERCHROMOSOMAL[chr19--chr15]""]"	chr19:45526972-chr15:75676607	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VAMP2--SCNN1A	1	0	1.0	0.0	ONLY_REF_SPLICE	VAMP2^ENSG00000220205.9	chr17:8161473:-	SCNN1A^ENSG00000111319.13	chr12:6349405:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1270:15910:13905	.	YES_LDAS	0.0146	GT	1.8256	AG	1.9656	"[""INTERCHROMOSOMAL[chr17--chr12]""]"	chr17:8161473-chr12:6349405	False		0	Read count too low: 1 < 5	FAIL	1
UTP6--UBE2G2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UTP6^ENSG00000108651.10	chr17:31866655:-	UBE2G2^ENSG00000184787.19	chr21:44770527:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2123:47687:12616	.	NO_LDAS	0.0146	GT	1.7968	AG	1.9656	"[""INTERCHROMOSOMAL[chr17--chr21]""]"	chr17:31866655-chr21:44770527	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
USP24--RNA5-8SP2	1	0	0.14	0.0	INCL_NON_REF_SPLICE	USP24^ENSG00000162402.14	chr1:55214790:-	RNA5-8SP2^ENSG00000200434.1	chr16:34163018:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:43861:7670	.	NO_LDAS	0.002	GT	1.6049	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:55214790-chr16:34163018	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
USP24--5_8S_rRNA	1	0	0.14	0.0	INCL_NON_REF_SPLICE	USP24^ENSG00000162402.14	chr1:55214790:-	5_8S_rRNA^ENSG00000277739.1	chr21:8256840:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:43861:7670	.	NO_LDAS	0.002	GT	1.6049	AG	1.5219	"[""INTERCHROMOSOMAL[chr1--chr20]""]"	chr1:55214790-chr21:8256840	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
USP24--5_8S_rRNA	1	0	0.14	0.0	INCL_NON_REF_SPLICE	USP24^ENSG00000162402.14	chr1:55214790:-	5_8S_rRNA^ENSG00000283568.1	chr20:29297187:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:43861:7670	.	NO_LDAS	0.002	GT	1.6049	AG	1.5219	"[""INTERCHROMOSOMAL[chr1--chr20]""]"	chr1:55214790-chr20:29297187	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
USP11--ORC1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	USP11^ENSG00000102226.10	chrX:47242306:+	ORC1^ENSG00000085840.13	chr1:52383500:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1341:4050:7179	.	NO_LDAS	0.0146	GT	1.585	AG	1.5656	"[""INTERCHROMOSOMAL[chrX--chr1]""]"	chrX:47242306-chr1:52383500	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UQCC1--WDR26	1	0	1.0	0.0	ONLY_REF_SPLICE	UQCC1^ENSG00000101019.22	chr20:35409345:-	WDR26^ENSG00000162923.17	chr1:224389860:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1232:39201:14172	.	YES_LDAS	0.0146	GC	1.9329	AG	1.8323	"[""INTERCHROMOSOMAL[chr20--chr1]""]"	chr20:35409345-chr1:224389860	False		0	Read count too low: 1 < 5	FAIL	1
UNC93B1--RNU5A-1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UNC93B1^ENSG00000110057.8	chr11:68003948:-	RNU5A-1^ENSG00000199568.1	chr15:65296071:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1191:51247:27806	.	YES_LDAS	0.0146	GT	1.2867	AG	1.7819	"[""INTERCHROMOSOMAL[chr11--chr15]""]"	chr11:68003948-chr15:65296071	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UFD1--PPP4C	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UFD1^ENSG00000070010.19	chr22:19479148:-	PPP4C^ENSG00000149923.14	chr16:30076002:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1465:21775:21598	.	NO_LDAS	0.0146	GT	1.5546	AG	1.5546	"[""INTERCHROMOSOMAL[chr22--chr16]""]"	chr22:19479148-chr16:30076002	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UBXN6--TAB1	1	0	1.0	0.0	ONLY_REF_SPLICE	UBXN6^ENSG00000167671.12	chr19:4457615:-	TAB1^ENSG00000100324.14	chr22:39426703:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2219:50478:17478	.	YES_LDAS	0.0146	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr22]""]"	chr19:4457615-chr22:39426703	False		0	Read count too low: 1 < 5	FAIL	1
UBXN2A--SURF4	1	0	1.0	0.0	ONLY_REF_SPLICE	UBXN2A^ENSG00000173960.14	chr2:23940648:+	SURF4^ENSG00000148248.14	chr9:133367445:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2217:8046:10346	.	YES_LDAS	0.0146	GT	1.6895	AG	1.8323	"[""INTERCHROMOSOMAL[chr2--chr9]""]"	chr2:23940648-chr9:133367445	False		0	Read count too low: 1 < 5	FAIL	1
UBAP2--CTCFL	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UBAP2^ENSG00000137073.23	chr9:33932562:-	CTCFL^ENSG00000124092.12	chr20:57518772:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1171:13709:13541	.	NO_LDAS	0.0146	GT	1.7056	AG	1.8892	"[""INTERCHROMOSOMAL[chr9--chr20]""]"	chr9:33932562-chr20:57518772	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TYMP--HBB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TYMP^ENSG00000025708.14	chr22:50529527:-	HBB^ENSG00000244734.4	chr11:5226967:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2463:16015:14788	.	NO_LDAS	0.0146	GT	1.5656	AG	1.7819	"[""INTERCHROMOSOMAL[chr22--chr11]""]"	chr22:50529527-chr11:5226967	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TXNDC11--BBX	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TXNDC11^ENSG00000153066.13	chr16:11733982:-	BBX^ENSG00000114439.19	chr3:107807474:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1417:16509:6899	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr16--chr3]""]"	chr16:11733982-chr3:107807474	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TXLNA--SALL4P2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TXLNA^ENSG00000084652.16	chr1:32194160:+	SALL4P2^ENSG00000238040.1	chrX:129872782:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1388:38319:5358	.	NO_LDAS	0.0146	GT	1.6402	AG	1.5058	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:32194160-chrX:129872782	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TUBA1C--RUFY2	1	0	1.0	0.0	ONLY_REF_SPLICE	TUBA1C^ENSG00000167553.16	chr12:49258001:+	RUFY2^ENSG00000204130.14	chr10:68346084:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1381:1809:7193	.	YES_LDAS	0.0146	GT	1.9329	AG	1.6895	"[""INTERCHROMOSOMAL[chr12--chr10]""]"	chr12:49258001-chr10:68346084	False		0	Read count too low: 1 < 5	FAIL	1
TSTD3--CAAP1	1	0	1.0	0.0	ONLY_REF_SPLICE	TSTD3^ENSG00000279170.3	chr6:99531790:+	CAAP1^ENSG00000120159.13	chr9:26887513:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1357:47162:12910	.	NO_LDAS	0.0146	GT	1.9329	AG	1.5329	"[""INTERCHROMOSOMAL[chr6--chr9]""]"	chr6:99531790-chr9:26887513	False		0	Read count too low: 1 < 5	FAIL	1
TSR3--MIR663AHG	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TSR3^ENSG00000007520.4	chr16:1349473:-	MIR663AHG^ENSG00000227195.11	chr20:26208395:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2217:7213:20982	.	NO_LDAS	0.0146	GT	1.6895	AG	1.8323	"[""INTERCHROMOSOMAL[chr16--chr20]""]"	chr16:1349473-chr20:26208395	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TSR2--CRNN	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TSR2^ENSG00000158526.8	chrX:54444805:+	CRNN^ENSG00000143536.7	chr1:152409655:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2109:30351:18655	.	YES_LDAS	0.0146	GT	1.9656	AG	1.4295	"[""INTERCHROMOSOMAL[chrX--chr1]""]"	chrX:54444805-chr1:152409655	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TSC22D2--SLC20A2	1	0	1.0	0.0	ONLY_REF_SPLICE	TSC22D2^ENSG00000196428.12	chr3:150411308:+	SLC20A2^ENSG00000168575.10	chr8:42535335:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2152:13904:3200	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9899	"[""INTERCHROMOSOMAL[chr3--chr8]""]"	chr3:150411308-chr8:42535335	False		0	Read count too low: 1 < 5	FAIL	1
TRRAP--MEX3B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRRAP^ENSG00000196367.14	chr7:98949506:+	MEX3B^ENSG00000183496.6	chr15:82045989:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1120:46628:15741	.	NO_LDAS	0.0146	GC	1.4566	AG	1.5329	"[""INTERCHROMOSOMAL[chr7--chr15]""]"	chr7:98949506-chr15:82045989	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRRAP--CRLS1	1	0	1.0	0.0	ONLY_REF_SPLICE	TRRAP^ENSG00000196367.14	chr7:98893881:+	CRLS1^ENSG00000088766.12	chr20:6015361:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2329:32446:3620	.	YES_LDAS	0.0146	GT	1.6895	AG	1.4566	"[""INTERCHROMOSOMAL[chr7--chr20]""]"	chr7:98893881-chr20:6015361	False		0	Read count too low: 1 < 5	FAIL	1
TRRAP--CRCP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRRAP^ENSG00000196367.14	chr7:98912213:+	CRCP^ENSG00000241258.7	chr7:66153105:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2125:40350:24681	.	NO_LDAS	0.0146	GT	1.7968	AG	1.8062	"[""INTRACHROMOSOMAL[chr7:32.72Mb]""]"	chr7:98912213-chr7:66153105	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRPS1--WWP1	1	0	1.0	0.0	ONLY_REF_SPLICE	TRPS1^ENSG00000104447.13	chr8:115587001:-	WWP1^ENSG00000123124.14	chr8:86374030:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2288:16379:19034	.	YES_LDAS	0.0146	GT	1.9329	AG	1.6729	"[""INTRACHROMOSOMAL[chr8:28.93Mb]""]"	chr8:115587001-chr8:86374030	False		0	Read count too low: 1 < 5	FAIL	1
TRIP13--DUSP9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRIP13^ENSG00000071539.14	chr5:893090:+	DUSP9^ENSG00000130829.18	chrX:153647508:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1369:12504:18459	.	NO_LDAS	0.0146	GT	1.7819	AG	1.6402	"[""INTERCHROMOSOMAL[chr5--chrX]""]"	chr5:893090-chrX:153647508	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRIM52--ZNF207	1	0	1.0	0.0	ONLY_REF_SPLICE	TRIM52^ENSG00000183718.5	chr5:181260001:-	ZNF207^ENSG00000010244.19	chr17:32369295:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:45196:2864	.	YES_LDAS	0.0146	GT	1.8892	AG	1.2867	"[""INTERCHROMOSOMAL[chr5--chr17]""]"	chr5:181260001-chr17:32369295	False		0	Read count too low: 1 < 5	FAIL	1
TRIM38--RBMS3-AS3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRIM38^ENSG00000112343.11	chr6:25972099:+	RBMS3-AS3^ENSG00000235904.3	chr3:29261045:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2274:47712:19524	.	NO_LDAS	0.0146	GT	1.9656	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr3]""]"	chr6:25972099-chr3:29261045	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRIM38--OSBPL2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRIM38^ENSG00000112343.11	chr6:25973285:+	OSBPL2^ENSG00000130703.17	chr20:62284586:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1269:14243:7768	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr6--chr20]""]"	chr6:25973285-chr20:62284586	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRAPPC9--ITFG2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRAPPC9^ENSG00000167632.18	chr8:140275674:-	ITFG2^ENSG00000111203.13	chr12:2820092:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1233:17730:27988	.	YES_LDAS	0.0146	GT	1.9329	AG	1.7968	"[""INTERCHROMOSOMAL[chr8--chr12]""]"	chr8:140275674-chr12:2820092	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPT1-AS1--NPAS2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TPT1-AS1^ENSG00000170919.16	chr13:45370092:+	NPAS2^ENSG00000170485.17	chr2:100937753:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:36151:9898	.	YES_LDAS	0.0146	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr13--chr2]""]"	chr13:45370092-chr2:100937753	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPRN--SLC16A1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TPRN^ENSG00000176058.13	chr9:137193633:-	SLC16A1^ENSG00000155380.13	chr1:112956191:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2316:34938:25956	.	NO_LDAS	0.0146	GT	1.6402	AG	1.8295	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:137193633-chr1:112956191	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPM3--INO80D	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TPM3^ENSG00000143549.21	chr1:154176115:-	INO80D^ENSG00000114933.16	chr2:206009778:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2184:45705:16049	.	YES_LDAS	0.0146	GT	1.5058	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:154176115-chr2:206009778	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPI1--NCOA6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TPI1^ENSG00000111669.15	chr12:6868845:+	NCOA6^ENSG00000198646.14	chr20:34740972:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2222:47857:12490	.	NO_LDAS	0.0146	GT	1.6895	AG	1.7465	"[""INTERCHROMOSOMAL[chr12--chr20]""]"	chr12:6868845-chr20:34740972	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPGS1--LMF1	1	0	1.0	0.0	ONLY_REF_SPLICE	TPGS1^ENSG00000141933.9	chr19:507844:+	LMF1^ENSG00000103227.19	chr16:954666:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:44524:24373	.	YES_LDAS	0.0146	GT	1.6402	AG	1.8256	"[""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:507844-chr16:954666	False		0	Read count too low: 1 < 5	FAIL	1
TP63--ITPR2	1	0	1.0	0.0	ONLY_REF_SPLICE	TP63^ENSG00000073282.14	chr3:189808526:+	ITPR2^ENSG00000123104.12	chr12:26790227:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1108:17164:27623	.	YES_LDAS	0.0146	GT	1.8323	AG	1.8062	"[""INTERCHROMOSOMAL[chr3--chr12]""]"	chr3:189808526-chr12:26790227	False		0	Read count too low: 1 < 5	FAIL	1
TOP3A--SMCR8	1	0	1.0	0.0	ONLY_REF_SPLICE	TOP3A^ENSG00000177302.15	chr17:18292645:-	SMCR8^ENSG00000176994.11	chr17:18322617:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1280:46692:28492	.	YES_LDAS	0.0146	GT	1.6895	AG	1.7465	"[""INTRACHROMOSOMAL[chr17:0.00Mb]"",""LOCAL_INVERSION:-:+:[286]""]"	chr17:18292645-chr17:18322617	False		0	Read count too low: 1 < 5	FAIL	1
TNIP1--GTF2I	1	0	0.5	0.0	ONLY_REF_SPLICE	TNIP1^ENSG00000145901.16	chr5:151032287:-	GTF2I^ENSG00000263001.7	chr7:74756820:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1252:18005:28212	.	YES_LDAS	0.0073	GT	1.8256	AG	1.9329	"[""INTERCHROMOSOMAL[chr5--chr7]""]"	chr5:151032287-chr7:74756820	False		0	Read count too low: 1 < 5	FAIL	1
TMEM259--VASH1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TMEM259^ENSG00000182087.14	chr19:1014456:-	VASH1^ENSG00000071246.11	chr14:76776049:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2347:11549:20449	.	NO_LDAS	0.0146	GT	1.4566	AG	1.2419	"[""INTERCHROMOSOMAL[chr19--chr14]""]"	chr19:1014456-chr14:76776049	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMEM156--ATP8A1	1	0	1.0	0.0	ONLY_REF_SPLICE	TMEM156^ENSG00000121895.8	chr4:38986336:-	ATP8A1^ENSG00000124406.16	chr4:42507154:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1166:41264:7235	.	YES_LDAS	0.0146	GT	1.8892	AG	1.8062	"[""INTRACHROMOSOMAL[chr4:3.38Mb]""]"	chr4:38986336-chr4:42507154	False		0	Read count too low: 1 < 5	FAIL	1
TIMELESS--THBS3	1	0	0.5	0.0	ONLY_REF_SPLICE	TIMELESS^ENSG00000111602.12	chr12:56421727:-	THBS3^ENSG00000169231.13	chr1:155198220:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1334:8896:16161	.	NO_LDAS	0.0073	GT	1.9656	AG	1.7968	"[""INTERCHROMOSOMAL[chr12--chr1]""]"	chr12:56421727-chr1:155198220	False		0	Read count too low: 1 < 5	FAIL	1
TIAM1--USP16	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TIAM1^ENSG00000156299.13	chr21:31164962:-	USP16^ENSG00000156256.15	chr21:29052695:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1366:26030:13387	.	NO_LDAS	0.0146	GT	1.8062	AG	1.7819	"[""INTRACHROMOSOMAL[chr21:2.06Mb]""]"	chr21:31164962-chr21:29052695	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
THOC6--TBC1D29P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	THOC6^ENSG00000131652.14	chr16:3026288:+	TBC1D29P^ENSG00000266733.7	chr17:30560570:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2493:43650:26671	.	NO_LDAS	0.0146	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr16--chr17]""]"	chr16:3026288-chr17:30560570	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TGM4--TGM1	1	0	1.0	0.0	ONLY_REF_SPLICE	TGM4^ENSG00000163810.12	chr3:44901931:+	TGM1^ENSG00000092295.12	chr14:24258388:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1398:41466:16554	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr3--chr14]""]"	chr3:44901931-chr14:24258388	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
TGFA--FAM107A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TGFA^ENSG00000163235.16	chr2:70453218:-	FAM107A^ENSG00000168309.18	chr3:58565356:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1274:1607:23097	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9899	"[""INTERCHROMOSOMAL[chr2--chr3]""]"	chr2:70453218-chr3:58565356	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TENT5C--MYL9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TENT5C^ENSG00000183508.5	chr1:117627758:+	MYL9^ENSG00000101335.10	chr20:36548032:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2477:11857:20617	.	NO_LDAS	0.0146	GT	1.0389	AG	1.5656	"[""INTERCHROMOSOMAL[chr1--chr20]""]"	chr1:117627758-chr20:36548032	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TCF3--PPM1F	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TCF3^ENSG00000071564.17	chr19:1652326:-	PPM1F^ENSG00000100034.14	chr22:21922955:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1394:11557:12392	.	NO_LDAS	0.0146	GC	0.9056	AG	1.6402	"[""INTERCHROMOSOMAL[chr19--chr22]""]"	chr19:1652326-chr22:21922955	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TCAF2C--SLC19A1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TCAF2C^ENSG00000283528.2	chr7:143644548:-	SLC19A1^ENSG00000173638.19	chr21:45498416:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2388:16031:8342	.	NO_LDAS	0.0048	GT	1.7465	AG	1.6402	"[""INTERCHROMOSOMAL[chr7--chr21]""]"	chr7:143644548-chr21:45498416	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TCAF2--SLC19A1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TCAF2^ENSG00000170379.20	chr7:143722789:+	SLC19A1^ENSG00000173638.19	chr21:45498416:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2388:16031:8342	.	NO_LDAS	0.0048	GT	1.7465	AG	1.6402	"[""INTERCHROMOSOMAL[chr7--chr21]""]"	chr7:143722789-chr21:45498416	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TBP--PKN1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	TBP^ENSG00000112592.14	chr6:170562024:+	PKN1^ENSG00000123143.13	chr19:14451968:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2495:1647:23280	.	NO_LDAS	0.0073	GT	1.5656	AG	1.8256	"[""INTERCHROMOSOMAL[chr6--chr19]""]"	chr6:170562024-chr19:14451968	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TBP--GUCD1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	TBP^ENSG00000112592.14	chr6:170562024:+	GUCD1^ENSG00000138867.17	chr22:24555053:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2495:1647:23280	.	NO_LDAS	0.0073	GT	1.5656	AG	1.8062	"[""INTERCHROMOSOMAL[chr6--chr22]""]"	chr6:170562024-chr22:24555053	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TBP--DHX29	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TBP^ENSG00000112592.14	chr6:170562024:+	DHX29^ENSG00000067248.10	chr5:55283664:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1212:38004:6353	.	NO_LDAS	0.0146	GT	1.5656	AG	1.5058	"[""INTERCHROMOSOMAL[chr6--chr5]""]"	chr6:170562024-chr5:55283664	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TBCK--BANK1	1	0	1.0	0.0	ONLY_REF_SPLICE	TBCK^ENSG00000145348.17	chr4:106095482:-	BANK1^ENSG00000153064.12	chr4:101917993:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2315:21484:21430	.	NO_LDAS	0.0146	GT	1.7465	AG	1.7819	"[""INTRACHROMOSOMAL[chr4:3.97Mb]""]"	chr4:106095482-chr4:101917993	False		0	Read count too low: 1 < 5	FAIL	1
TBC1D24--AC068389.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TBC1D24^ENSG00000162065.14	chr16:2485289:+	AC068389.1^ENSG00000228862.4	chr8:60631506:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1187:13717:9716	.	NO_LDAS	0.0146	GT	1.053	AG	0.8366	"[""INTERCHROMOSOMAL[chr16--chr8]""]"	chr16:2485289-chr8:60631506	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TACC1--HLA-DPA1	1	0	1.0	0.0	ONLY_REF_SPLICE	TACC1^ENSG00000147526.20	chr8:38827375:+	HLA-DPA1^ENSG00000231389.7	chr6:33069886:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2420:22010:10122	.	NO_LDAS	0.0146	GT	1.9086	AG	1.9899	"[""INTERCHROMOSOMAL[chr8--chr6]""]"	chr8:38827375-chr6:33069886	False		0	Read count too low: 1 < 5	FAIL	1
SYPL1--AL049844.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SYPL1^ENSG00000008282.9	chr7:106112152:-	AL049844.2^ENSG00000270890.1	chr6:143858673:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1165:33053:10837	.	YES_LDAS	0.0146	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr7--chr6]""]"	chr7:106112152-chr6:143858673	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SYNGAP1--AGT	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SYNGAP1^ENSG00000197283.17	chr6:33447933:+	AGT^ENSG00000135744.9	chr1:230694364:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:26718:9758	.	NO_LDAS	0.0146	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:33447933-chr1:230694364	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SYNE3--CLN8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SYNE3^ENSG00000176438.12	chr14:95444485:-	CLN8^ENSG00000182372.10	chr8:1786219:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1291:25755:7614	.	NO_LDAS	0.0146	GT	1.9899	AG	1.5546	"[""INTERCHROMOSOMAL[chr14--chr8]""]"	chr14:95444485-chr8:1786219	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SYNE2--CD207	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SYNE2^ENSG00000054654.19	chr14:64024459:+	CD207^ENSG00000116031.9	chr2:70830974:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1428:42607:9029	.	NO_LDAS	0.0146	GT	1.9329	AG	1.9899	"[""INTERCHROMOSOMAL[chr14--chr2]""]"	chr14:64024459-chr2:70830974	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SVIL--CES1P1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SVIL^ENSG00000197321.15	chr10:29480563:-	CES1P1^ENSG00000228695.10	chr16:55774839:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:23466:3060	.	NO_LDAS	0.0073	GT	1.9656	AG	1.6895	"[""INTERCHROMOSOMAL[chr10--chr16]""]"	chr10:29480563-chr16:55774839	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SV2A--POLR3E	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SV2A^ENSG00000159164.10	chr1:149908191:-	POLR3E^ENSG00000058600.16	chr16:22316601:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2166:45681:22453	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:149908191-chr16:22316601	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SUN1--SMC6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SUN1^ENSG00000164828.18	chr7:843232:+	SMC6^ENSG00000163029.16	chr2:17670562:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1428:29145:16680	.	NO_LDAS	0.0146	GT	1.8256	AG	1.6402	"[""INTERCHROMOSOMAL[chr7--chr2]""]"	chr7:843232-chr2:17670562	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STK25--TMEM175	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STK25^ENSG00000115694.15	chr2:241495177:-	TMEM175^ENSG00000127419.17	chr4:947767:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2271:16217:10318	.	YES_LDAS	0.0146	GT	1.6895	AG	1.9329	"[""INTERCHROMOSOMAL[chr2--chr4]""]"	chr2:241495177-chr4:947767	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STK17A--TPK1	1	0	1.0	0.0	ONLY_REF_SPLICE	STK17A^ENSG00000164543.7	chr7:43583449:+	TPK1^ENSG00000196511.14	chr7:144648879:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1124:51813:5778	.	YES_LDAS	0.0146	GT	1.6402	AG	1.7232	"[""INTRACHROMOSOMAL[chr7:100.80Mb]""]"	chr7:43583449-chr7:144648879	False		0	Read count too low: 1 < 5	FAIL	1
ST8SIA2--AP1G2	1	0	0.2	0.0	INCL_NON_REF_SPLICE	ST8SIA2^ENSG00000140557.12	chr15:92393910:+	AP1G2^ENSG00000213983.12	chr14:23567711:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1195:20238:14900	.	NO_LDAS	0.0029	GC	1.5058	AG	1.5656	"[""INTERCHROMOSOMAL[chr15--chr14]""]"	chr15:92393910-chr14:23567711	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SRP14--NMT2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SRP14^ENSG00000140319.11	chr15:40039109:-	NMT2^ENSG00000152465.18	chr10:15168603:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1425:22714:7221	.	NO_LDAS	0.0146	GT	1.8062	AG	1.8892	"[""INTERCHROMOSOMAL[chr15--chr10]""]"	chr15:40039109-chr10:15168603	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SRCAP--TRIM29	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SRCAP^ENSG00000080603.17	chr16:30698391:+	TRIM29^ENSG00000137699.17	chr11:120128495:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:18936:18501	.	NO_LDAS	0.0146	GT	1.5301	AG	1.9656	"[""INTERCHROMOSOMAL[chr16--chr11]""]"	chr16:30698391-chr11:120128495	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SPPL3--TPCN1	1	0	1.0	0.0	ONLY_REF_SPLICE	SPPL3^ENSG00000157837.16	chr12:120903845:-	TPCN1^ENSG00000186815.13	chr12:113260368:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1312:25561:19917	.	YES_LDAS	0.0146	GT	1.9656	AG	1.9219	"[""INTRACHROMOSOMAL[chr12:7.46Mb]""]"	chr12:120903845-chr12:113260368	False		0	Read count too low: 1 < 5	FAIL	1
SPINT2--AC010642.2	1	0	1.0	0.0	ONLY_REF_SPLICE	SPINT2^ENSG00000167642.13	chr19:38264998:+	AC010642.2^ENSG00000283103.3	chr19:58315036:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2447:28571:1532	.	YES_LDAS	0.0146	GT	1.7819	AG	1.7465	"[""INTRACHROMOSOMAL[chr19:20.02Mb]""]"	chr19:38264998-chr19:58315036	False		0	Read count too low: 1 < 5	FAIL	1
SPDYE16--CTLA4	1	0	0.17	0.0	INCL_NON_REF_SPLICE	SPDYE16^ENSG00000185040.13	chr7:76532607:-	CTLA4^ENSG00000163599.17	chr2:203867979:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2232:25310:27245	.	NO_LDAS	0.0025	GT	0.6998	AG	1.9219	"[""INTERCHROMOSOMAL[chr7--chr2]""]"	chr7:76532607-chr2:203867979	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SOBP--YWHAZ	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SOBP^ENSG00000112320.12	chr6:107506427:+	YWHAZ^ENSG00000164924.18	chr8:100918879:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:34638:6605	.	NO_LDAS	0.0146	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr6--chr8]""]"	chr6:107506427-chr8:100918879	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
SNX1--HOXB-AS4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SNX1^ENSG00000028528.15	chr15:64118244:+	HOXB-AS4^ENSG00000242207.1	chr17:48628813:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2293:41434:12070	.	NO_LDAS	0.0146	GT	1.9329	AG	1.3996	"[""INTERCHROMOSOMAL[chr15--chr17]""]"	chr15:64118244-chr17:48628813	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SMARCC1--IFI44L	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SMARCC1^ENSG00000173473.11	chr3:47610314:-	IFI44L^ENSG00000137959.17	chr1:78629631:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1467:22439:23280	.	NO_LDAS	0.0073	GC	1.7465	AG	1.7968	"[""INTERCHROMOSOMAL[chr3--chr1]""]"	chr3:47610314-chr1:78629631	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLFN5--TRAPPC10	1	0	1.0	0.0	ONLY_REF_SPLICE	SLFN5^ENSG00000166750.10	chr17:35261096:+	TRAPPC10^ENSG00000160218.13	chr21:44082788:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:40010:26194	.	YES_LDAS	0.0146	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr17--chr21]""]"	chr17:35261096-chr21:44082788	False		0	Read count too low: 1 < 5	FAIL	1
SLC9A9--FAF1	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC9A9^ENSG00000181804.15	chr3:143467037:-	FAF1^ENSG00000185104.20	chr1:50705891:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1455:45624:7193	.	YES_LDAS	0.0146	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr3--chr1]""]"	chr3:143467037-chr1:50705891	False		0	Read count too low: 1 < 5	FAIL	1
SLC7A6OS--PDE6A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SLC7A6OS^ENSG00000103061.13	chr16:68299190:-	PDE6A^ENSG00000132915.11	chr5:149867234:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1377:26330:6563	.	NO_LDAS	0.0073	GT	1.7232	AG	1.7465	"[""INTERCHROMOSOMAL[chr16--chr5]""]"	chr16:68299190-chr5:149867234	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC6A11--ARCN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC6A11^ENSG00000132164.10	chr3:10940211:+	ARCN1^ENSG00000095139.14	chr11:118597707:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:7998:17184	.	NO_LDAS	0.0146	GT	1.371	AG	1.5301	"[""INTERCHROMOSOMAL[chr3--chr11]""]"	chr3:10940211-chr11:118597707	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC31A1--RACK1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC31A1^ENSG00000136868.11	chr9:113262180:+	RACK1^ENSG00000204628.12	chr5:181237042:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2249:16395:1939	.	NO_LDAS	0.0146	GT	1.8323	AG	1.8062	"[""INTERCHROMOSOMAL[chr9--chr5]""]"	chr9:113262180-chr5:181237042	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC25A45--VPS13C	1	0	0.33	0.0	INCL_NON_REF_SPLICE	SLC25A45^ENSG00000162241.12	chr11:65375323:-	VPS13C^ENSG00000129003.19	chr15:61910305:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1339:7553:6773	.	NO_LDAS	0.0048	GT	1.9086	AG	1.7465	"[""INTERCHROMOSOMAL[chr11--chr15]""]"	chr11:65375323-chr15:61910305	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC24A3--RBMS3	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC24A3^ENSG00000185052.13	chr20:19281087:+	RBMS3^ENSG00000144642.22	chr3:29587114:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:46158:11817	.	YES_LDAS	0.0146	GT	1.7819	AG	1.3996	"[""INTERCHROMOSOMAL[chr20--chr3]""]"	chr20:19281087-chr3:29587114	False		0	Read count too low: 1 < 5	FAIL	1
SLC17A9--CRELD1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC17A9^ENSG00000101194.18	chr20:62968488:+	CRELD1^ENSG00000163703.19	chr3:9940850:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2342:41199:29151	.	NO_LDAS	0.0146	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr20--chr3]""]"	chr20:62968488-chr3:9940850	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC16A2--ANKRD17	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC16A2^ENSG00000147100.11	chrX:74531705:+	ANKRD17^ENSG00000132466.19	chr4:73092245:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2149:2391:16161	.	NO_LDAS	0.0146	GT	1.9329	AG	1.6729	"[""INTERCHROMOSOMAL[chrX--chr4]""]"	chrX:74531705-chr4:73092245	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLBP--SMARCAD1	1	0	1.0	0.0	ONLY_REF_SPLICE	SLBP^ENSG00000163950.13	chr4:1703596:-	SMARCAD1^ENSG00000163104.18	chr4:94226119:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2222:15845:19594	.	NO_LDAS	0.0146	GT	1.6402	AG	1.8892	"[""INTRACHROMOSOMAL[chr4:92.50Mb]""]"	chr4:1703596-chr4:94226119	False		0	Read count too low: 1 < 5	FAIL	1
SIN3A--MAGEB10	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SIN3A^ENSG00000169375.16	chr15:75412763:-	MAGEB10^ENSG00000177689.10	chrX:27822333:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2157:1809:14116	.	NO_LDAS	0.0146	GT	1.8062	AG	1.8295	"[""INTERCHROMOSOMAL[chr15--chrX]""]"	chr15:75412763-chrX:27822333	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SH3BP5L--PLAC8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SH3BP5L^ENSG00000175137.11	chr1:248811935:-	PLAC8^ENSG00000145287.11	chr4:83105020:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2413:41596:16806	.	NO_LDAS	0.0146	GT	1.4295	AG	1.9329	"[""INTERCHROMOSOMAL[chr1--chr4]""]"	chr1:248811935-chr4:83105020	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SH3BP2--TLE2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SH3BP2^ENSG00000087266.17	chr4:2829910:+	TLE2^ENSG00000065717.15	chr19:3009596:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1105:11460:28086	.	NO_LDAS	0.0146	GT	1.8892	AG	1.3753	"[""INTERCHROMOSOMAL[chr4--chr19]""]"	chr4:2829910-chr19:3009596	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SFN--TMUB1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SFN^ENSG00000175793.12	chr1:26863621:+	TMUB1^ENSG00000164897.14	chr7:151081841:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1198:8637:12686	.	YES_LDAS	0.0146	GT	1.7056	AG	1.5656	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:26863621-chr7:151081841	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SETD2--TMEM161A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SETD2^ENSG00000181555.21	chr3:47164012:-	TMEM161A^ENSG00000064545.15	chr19:19130271:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2239:50478:1084	.	NO_LDAS	0.0146	GT	0.971	AG	1.2419	"[""INTERCHROMOSOMAL[chr3--chr19]""]"	chr3:47164012-chr19:19130271	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SETD2--SRRT	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SETD2^ENSG00000181555.21	chr3:47164012:-	SRRT^ENSG00000087087.20	chr7:100886857:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2184:5660:17759	.	NO_LDAS	0.0146	GT	0.971	AG	1.4566	"[""INTERCHROMOSOMAL[chr3--chr7]""]"	chr3:47164012-chr7:100886857	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SERBP1--NCL	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SERBP1^ENSG00000142864.15	chr1:67425192:-	NCL^ENSG00000115053.17	chr2:231461963:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1310:1882:24695	.	YES_LDAS	0.0146	GT	1.9086	AG	1.8256	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:67425192-chr2:231461963	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SEMA4D--ABCC1	1	0	1.0	0.0	ONLY_REF_SPLICE	SEMA4D^ENSG00000187764.12	chr9:89497919:-	ABCC1^ENSG00000103222.20	chr16:16007816:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1463:49411:11761	.	YES_LDAS	0.0146	GT	1.6895	AG	1.9656	"[""INTERCHROMOSOMAL[chr9--chr16]""]"	chr9:89497919-chr16:16007816	False		0	Read count too low: 1 < 5	FAIL	1
SCPEP1--MIR4426	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SCPEP1^ENSG00000121064.13	chr17:56997055:+	MIR4426^ENSG00000283795.1	chr1:192716372:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1253:2707:10963	.	YES_LDAS	0.0073	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:56997055-chr1:192716372	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SCN1B--ZSWIM1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SCN1B^ENSG00000105711.13	chr19:35038129:+	ZSWIM1^ENSG00000168612.5	chr20:45883608:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:9624:22551	.	NO_LDAS	0.0146	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr20]""]"	chr19:35038129-chr20:45883608	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SCN1A--CUL4B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SCN1A^ENSG00000144285.22	chr2:165989139:-	CUL4B^ENSG00000158290.19	chrX:120560625:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1380:22123:13625	.	NO_LDAS	0.0146	GT	1.8323	AG	1.5628	"[""INTERCHROMOSOMAL[chr2--chrX]""]"	chr2:165989139-chrX:120560625	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SCLY--ARID5B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SCLY^ENSG00000132330.18	chr2:238098949:+	ARID5B^ENSG00000150347.17	chr10:62091112:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2107:18960:24120	.	NO_LDAS	0.0073	GT	1.7465	AG	1.8295	"[""INTERCHROMOSOMAL[chr2--chr10]""]"	chr2:238098949-chr10:62091112	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SCEL--LMO7	1	0	1.0	0.0	ONLY_REF_SPLICE	SCEL^ENSG00000136155.17	chr13:77535824:+	LMO7^ENSG00000136153.20	chr13:75795401:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2116:13095:13065	.	YES_LDAS	0.0146	GT	1.9656	AG	1.6895	"[""DEEPEST2019"",""INTRACHROMOSOMAL[chr13:1.68Mb]""]"	chr13:77535824-chr13:75795401	False		0	Read count too low: 1 < 5	FAIL	1
SCAMP1-AS1--NDEL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SCAMP1-AS1^ENSG00000245556.3	chr5:78356553:-	NDEL1^ENSG00000166579.16	chr17:8466189:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1116:25116:13989	.	NO_LDAS	0.0146	GT	1.7819	AG	1.6729	"[""INTERCHROMOSOMAL[chr5--chr17]""]"	chr5:78356553-chr17:8466189	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SAMD8--AC003681.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SAMD8^ENSG00000156671.15	chr10:75151106:+	AC003681.1^ENSG00000279159.1	chr22:29990230:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1389:4018:28002	.	NO_LDAS	0.0146	GT	1.8323	AG	1.7968	"[""INTERCHROMOSOMAL[chr10--chr22]""]"	chr10:75151106-chr22:29990230	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SAMD5--SASH1	1	0	1.0	0.0	ONLY_REF_SPLICE	SAMD5^ENSG00000203727.4	chr6:147509387:+	SASH1^ENSG00000111961.18	chr6:148390134:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2238:6186:27721	.	YES_LDAS	0.0146	GT	1.8295	AG	1.9219	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr6:0.70Mb]""]"	chr6:147509387-chr6:148390134	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
RSRP1--DPP9	1	0	1.0	0.0	ONLY_REF_SPLICE	RSRP1^ENSG00000117616.18	chr1:25245150:-	DPP9^ENSG00000142002.18	chr19:4694823:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2496:2391:24344	.	YES_LDAS	0.0146	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:25245150-chr19:4694823	False		0	Read count too low: 1 < 5	FAIL	1
RPSA--FAM149A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPSA^ENSG00000168028.14	chr3:39410999:+	FAM149A^ENSG00000109794.13	chr4:186158377:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2433:35900:5792	.	NO_LDAS	0.0146	GT	1.6895	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr4]""]"	chr3:39410999-chr4:186158377	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPS23P8--NASP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS23P8^ENSG00000230629.2	chrX:70963233:+	NASP^ENSG00000132780.17	chr1:45612878:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1473:51223:16778	.	NO_LDAS	0.0146	GT	1.7819	AG	1.8295	"[""INTERCHROMOSOMAL[chrX--chr1]""]"	chrX:70963233-chr1:45612878	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPN1--L3MBTL4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPN1^ENSG00000163902.12	chr3:128650534:-	L3MBTL4^ENSG00000154655.16	chr18:6030994:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1397:28506:7446	.	NO_LDAS	0.0146	GT	1.7232	AG	1.5058	"[""INTERCHROMOSOMAL[chr3--chr18]""]"	chr3:128650534-chr18:6030994	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL39--FLNA	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL39^ENSG00000198918.8	chrX:119786552:-	FLNA^ENSG00000196924.19	chrX:154367951:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1234:47784:5218	.	NO_LDAS	0.0146	GT	1.9086	AG	1.8062	"[""INTRACHROMOSOMAL[chrX:34.56Mb]""]"	chrX:119786552-chrX:154367951	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL32P3--RPL32P25	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL32P3^ENSG00000251474.6	chr3:129397040:-	RPL32P25^ENSG00000242993.1	chr11:95963312:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1365:41013:13135	.	NO_LDAS	0.0146	GT	1.7968	AG	1.8256	"[""INTERCHROMOSOMAL[chr3--chr11]""]"	chr3:129397040-chr11:95963312	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL26--HBG1	1	0	0.12	0.0	INCL_NON_REF_SPLICE	RPL26^ENSG00000161970.15	chr17:8379796:-	HBG1^ENSG00000213934.9	chr11:5249750:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1278:20950:9604	.	NO_LDAS	0.0018	GT	1.8323	AG	1.5656	"[""INTERCHROMOSOMAL[chr17--chr11]""]"	chr17:8379796-chr11:5249750	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL22P10--RPL22P19	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RPL22P10^ENSG00000213295.3	chr2:106247524:+	RPL22P19^ENSG00000241129.3	chr12:124935706:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2390:13232:4979	.	YES_LDAS	0.0073	GT	1.4716	AG	1.8323	"[""INTERCHROMOSOMAL[chr2--chr12]""]"	chr2:106247524-chr12:124935706	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPA2--GEMIN7	1	0	1.0	0.0	ONLY_REF_SPLICE	RPA2^ENSG00000117748.10	chr1:27894012:-	GEMIN7^ENSG00000142252.11	chr19:45090107:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2457:19316:16217	.	YES_LDAS	0.0146	GT	1.8256	AG	1.6402	"[""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:27894012-chr19:45090107	False		0	Read count too low: 1 < 5	FAIL	1
RNU6-13P--NACA3P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNU6-13P^ENSG00000206975.1	chr8:56917190:+	NACA3P^ENSG00000121089.4	chr4:164943327:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2406:8063:14270	.	YES_LDAS	0.0146	GT	1.7232	AG	1.8892	"[""INTERCHROMOSOMAL[chr8--chr4]""]"	chr8:56917190-chr4:164943327	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNU1-83P--BICD1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNU1-83P^ENSG00000200296.1	chr12:62850846:-	BICD1^ENSG00000151746.15	chr12:32216340:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2444:29695:6955	.	YES_LDAS	0.0146	GT	1.9329	AG	1.9086	"[""INTRACHROMOSOMAL[chr12:30.47Mb]""]"	chr12:62850846-chr12:32216340	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNFT1--GPM6A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNFT1^ENSG00000189050.16	chr17:59964608:-	GPM6A^ENSG00000150625.16	chr4:175906770:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1426:25213:11635	.	NO_LDAS	0.0146	GT	1.9086	AG	1.9329	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:59964608-chr4:175906770	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNF40--ANO9	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RNF40^ENSG00000103549.22	chr16:30768015:+	ANO9^ENSG00000185101.13	chr11:420053:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1133:27398:13513	.	NO_LDAS	0.0073	GT	1.8892	AG	1.8256	"[""INTERCHROMOSOMAL[chr16--chr11]""]"	chr16:30768015-chr11:420053	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNF165--RNH1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNF165^ENSG00000141622.14	chr18:46433394:+	RNH1^ENSG00000023191.17	chr11:499923:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2275:7488:4671	.	NO_LDAS	0.0146	GT	1.7232	AG	1.8892	"[""INTERCHROMOSOMAL[chr18--chr11]""]"	chr18:46433394-chr11:499923	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNF145--PIK3AP1	1	0	1.0	0.0	ONLY_REF_SPLICE	RNF145^ENSG00000145860.12	chr5:159203434:-	PIK3AP1^ENSG00000155629.15	chr10:96595634:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1167:7496:7123	.	NO_LDAS	0.0146	GT	1.7819	AG	1.7819	"[""INTERCHROMOSOMAL[chr5--chr10]""]"	chr5:159203434-chr10:96595634	False		0	Read count too low: 1 < 5	FAIL	1
RNF144A--CBLB	1	0	1.0	0.0	ONLY_REF_SPLICE	RNF144A^ENSG00000151692.15	chr2:6941147:+	CBLB^ENSG00000114423.23	chr3:105704173:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:15700:1575	.	YES_LDAS	0.0146	GT	1.9656	AG	1.9329	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr2--chr3]""]"	chr2:6941147-chr3:105704173	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
RN7SL417P--RN7SL752P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RN7SL417P^ENSG00000244056.3	chr15:84394176:+	RN7SL752P^ENSG00000239437.3	chr3:129591475:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2316:23345:4167	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr15--chr3]""]"	chr15:84394176-chr3:129591475	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
RIOK1--SNX33	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RIOK1^ENSG00000124784.9	chr6:7393276:+	SNX33^ENSG00000173548.9	chr15:75649436:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2337:9373:6423	.	NO_LDAS	0.0146	GT	1.9899	AG	1.8256	"[""INTERCHROMOSOMAL[chr6--chr15]""]"	chr6:7393276-chr15:75649436	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RIC1--SETD5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RIC1^ENSG00000107036.12	chr9:5629224:+	SETD5^ENSG00000168137.18	chr3:9397650:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2249:2456:10668	.	YES_LDAS	0.0146	GT	1.5329	AG	1.231	"[""INTERCHROMOSOMAL[chr9--chr3]""]"	chr9:5629224-chr3:9397650	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RHCG--RHBG	1	0	1.0	0.0	ONLY_REF_SPLICE	RHCG^ENSG00000140519.14	chr15:89496361:-	RHBG^ENSG00000132677.13	chr1:156377301:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:50656:15040	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9086	"[""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr15--chr1]""]"	chr15:89496361-chr1:156377301	False		0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	1
RHBDD1--OSBPL3	1	0	1.0	0.0	ONLY_REF_SPLICE	RHBDD1^ENSG00000144468.17	chr2:226914351:+	OSBPL3^ENSG00000070882.13	chr7:24834736:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2476:16314:7768	.	YES_LDAS	0.0146	GT	1.8323	AG	1.9329	"[""INTERCHROMOSOMAL[chr2--chr7]""]"	chr2:226914351-chr7:24834736	False		0	Read count too low: 1 < 5	FAIL	1
RFX3--HCN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RFX3^ENSG00000080298.15	chr9:3525983:-	HCN2^ENSG00000099822.3	chr19:616797:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1274:41887:29473	.	NO_LDAS	0.0146	GT	0.6998	AG	1.7056	"[""INTERCHROMOSOMAL[chr9--chr19]""]"	chr9:3525983-chr19:616797	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RFT1--CACNA1D	1	0	1.0	0.0	ONLY_REF_SPLICE	RFT1^ENSG00000163933.10	chr3:53130338:-	CACNA1D^ENSG00000157388.19	chr3:53702641:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1241:27891:21374	.	YES_LDAS	0.0146	GT	1.8062	AG	1.8295	"[""INTRACHROMOSOMAL[chr3:0.20Mb]""]"	chr3:53130338-chr3:53702641	False		0	Read count too low: 1 < 5	FAIL	1
RFESD--PALLD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RFESD^ENSG00000175449.14	chr5:95646757:+	PALLD^ENSG00000129116.19	chr4:168877982:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1311:5077:3802	.	NO_LDAS	0.0146	GT	1.4295	AG	1.6895	"[""INTERCHROMOSOMAL[chr5--chr4]""]"	chr5:95646757-chr4:168877982	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RELCH--MED13L	1	0	1.0	0.0	ONLY_REF_SPLICE	RELCH^ENSG00000134444.15	chr18:62188031:+	MED13L^ENSG00000123066.9	chr12:116096752:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1162:31831:23013	.	YES_LDAS	0.0146	GT	1.7465	AG	1.9329	"[""INTERCHROMOSOMAL[chr18--chr12]""]"	chr18:62188031-chr12:116096752	False		0	Read count too low: 1 < 5	FAIL	1
RBMS2--DEAF1	1	0	1.0	0.0	ONLY_REF_SPLICE	RBMS2^ENSG00000076067.13	chr12:56569990:+	DEAF1^ENSG00000177030.17	chr11:688460:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1455:15044:15881	.	YES_LDAS	0.0146	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr11]""]"	chr12:56569990-chr11:688460	False		0	Read count too low: 1 < 5	FAIL	1
RBM39--CCDC136	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RBM39^ENSG00000131051.24	chr20:35729312:-	CCDC136^ENSG00000128596.17	chr7:128815701:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1161:49532:13093	.	NO_LDAS	0.0146	GT	1.9329	AG	1.1589	"[""INTERCHROMOSOMAL[chr20--chr7]""]"	chr20:35729312-chr7:128815701	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RBM33--IPO5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RBM33^ENSG00000184863.11	chr7:155644919:+	IPO5^ENSG00000065150.21	chr13:97997603:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:42534:21374	.	NO_LDAS	0.0146	GT	1.4566	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr13]""]"	chr7:155644919-chr13:97997603	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RASSF1--AL049629.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RASSF1^ENSG00000068028.17	chr3:50330152:-	AL049629.2^ENSG00000284969.1	chr11:33710178:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:3014:25704	.	NO_LDAS	0.0146	GT	1.9329	AG	1.7465	"[""INTERCHROMOSOMAL[chr3--chr11]""]"	chr3:50330152-chr11:33710178	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RARG--PDE1B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RARG^ENSG00000172819.17	chr12:53215724:-	PDE1B^ENSG00000123360.12	chr12:54549603:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1290:21856:4391	.	NO_LDAS	0.0146	GT	1.371	AG	0.971	"[""INTRACHROMOSOMAL[chr12:1.32Mb]""]"	chr12:53215724-chr12:54549603	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAPGEF1--ZNF609	1	0	1.0	0.0	ONLY_REF_SPLICE	RAPGEF1^ENSG00000107263.18	chr9:131739770:-	ZNF609^ENSG00000180357.9	chr15:64622827:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2177:21565:5008	.	YES_LDAS	0.0146	GT	1.6895	AG	1.9329	"[""INTERCHROMOSOMAL[chr9--chr15]""]"	chr9:131739770-chr15:64622827	False		0	Read count too low: 1 < 5	FAIL	1
RAP1A--KDM1A	1	0	1.0	0.0	ONLY_REF_SPLICE	RAP1A^ENSG00000116473.14	chr1:111619934:+	KDM1A^ENSG00000004487.17	chr1:23050387:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:37931:24106	.	NO_LDAS	0.0146	GT	1.231	AG	1.6049	"[""INTRACHROMOSOMAL[chr1:88.46Mb]""]"	chr1:111619934-chr1:23050387	False		0	Read count too low: 1 < 5	FAIL	1
RALGAPB--NTRK2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RALGAPB^ENSG00000170471.15	chr20:38576933:+	NTRK2^ENSG00000148053.17	chr9:84811415:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2196:20513:2934	.	NO_LDAS	0.0146	GT	1.5329	AG	1.8062	"[""INTERCHROMOSOMAL[chr20--chr9]""]"	chr20:38576933-chr9:84811415	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RALGAPA1--HNRNPC	1	0	1.0	0.0	ONLY_REF_SPLICE	RALGAPA1^ENSG00000174373.17	chr14:35634574:-	HNRNPC^ENSG00000092199.18	chr14:21234229:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2274:46450:28184	.	YES_LDAS	0.0146	GT	1.7465	AG	1.6402	"[""INTRACHROMOSOMAL[chr14:14.27Mb]""]"	chr14:35634574-chr14:21234229	False		0	Read count too low: 1 < 5	FAIL	1
RAI1--NAPSB	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RAI1^ENSG00000108557.19	chr17:17810289:+	NAPSB^ENSG00000131401.11	chr19:50337282:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2249:1065:1336	.	NO_LDAS	0.0048	GC	1.6895	AG	1.5546	"[""INTERCHROMOSOMAL[chr17--chr19]""]"	chr17:17810289-chr19:50337282	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAD51B--CNTRL	1	0	1.0	0.0	ONLY_REF_SPLICE	RAD51B^ENSG00000182185.18	chr14:67887204:+	CNTRL^ENSG00000119397.18	chr9:121088296:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2196:13572:16918	.	NO_LDAS	0.0146	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr9]""]"	chr14:67887204-chr9:121088296	False		0	Read count too low: 1 < 5	FAIL	1
RAC2--ARID5B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RAC2^ENSG00000128340.15	chr22:37225526:-	ARID5B^ENSG00000150347.17	chr10:62091112:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2107:18960:24120	.	NO_LDAS	0.0073	GT	1.7465	AG	1.8295	"[""INTERCHROMOSOMAL[chr22--chr10]""]"	chr22:37225526-chr10:62091112	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RABL6--FAM126B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RABL6^ENSG00000196642.19	chr9:136832349:+	FAM126B^ENSG00000155744.9	chr2:200977252:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1377:43626:25816	.	NO_LDAS	0.0146	AT	1.7819	AC	1.7232	"[""INTERCHROMOSOMAL[chr9--chr2]""]"	chr9:136832349-chr2:200977252	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAB7A--RGP1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RAB7A^ENSG00000075785.14	chr3:128813429:+	RGP1^ENSG00000107185.10	chr9:35750294:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:14680:7432	.	NO_LDAS	0.0073	GT	1.7232	AG	1.8892	"[""INTERCHROMOSOMAL[chr3--chr9]""]"	chr3:128813429-chr9:35750294	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAB7A--PIGS	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RAB7A^ENSG00000075785.14	chr3:128813429:+	PIGS^ENSG00000087111.21	chr17:28556220:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:14680:7432	.	NO_LDAS	0.0073	GT	1.7232	AG	1.6729	"[""INTERCHROMOSOMAL[chr3--chr17]""]"	chr3:128813429-chr17:28556220	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAB33B--RAB8B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RAB33B^ENSG00000172007.7	chr4:139454444:+	RAB8B^ENSG00000166128.13	chr15:63244806:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:43497:19790	.	NO_LDAS	0.0146	GT	1.7465	AG	1.9086	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr4--chr15]""]"	chr4:139454444-chr15:63244806	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
RAB29--NOMO1	1	0	0.5	0.0	ONLY_REF_SPLICE	RAB29^ENSG00000117280.13	chr1:205774833:-	NOMO1^ENSG00000103512.15	chr16:14863013:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:17714:5092	.	YES_LDAS	0.0073	GT	1.8295	AG	1.7056	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:205774833-chr16:14863013	False		0	Read count too low: 1 < 5	FAIL	1
RAB11B--RN7SL634P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RAB11B^ENSG00000185236.12	chr19:8402873:+	RN7SL634P^ENSG00000242894.3	chr14:104013715:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1402:2076:29711	.	NO_LDAS	0.0146	GT	1.9899	AG	1.8323	"[""INTERCHROMOSOMAL[chr19--chr14]""]"	chr19:8402873-chr14:104013715	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTK2B--TGFBR2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PTK2B^ENSG00000120899.18	chr8:27454611:+	TGFBR2^ENSG00000163513.19	chr3:30688468:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2449:29574:26390	.	NO_LDAS	0.0146	GT	1.9899	AG	1.8062	"[""INTERCHROMOSOMAL[chr8--chr3]""]"	chr8:27454611-chr3:30688468	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTENP1-AS--PGR	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PTENP1-AS^ENSG00000281128.2	chr9:33677038:+	PGR^ENSG00000082175.15	chr11:101129236:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2334:26306:29557	.	NO_LDAS	0.0073	GT	1.231	AG	1.053	"[""INTERCHROMOSOMAL[chr9--chr11]""]"	chr9:33677038-chr11:101129236	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTBP3--MBP	1	0	1.0	0.0	ONLY_REF_SPLICE	PTBP3^ENSG00000119314.16	chr9:112297832:-	MBP^ENSG00000197971.16	chr18:77105286:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1123:34031:17717	.	NO_LDAS	0.0146	GT	1.9086	AG	1.9086	"[""INTERCHROMOSOMAL[chr9--chr18]""]"	chr9:112297832-chr18:77105286	False		0	Read count too low: 1 < 5	FAIL	1
PSMG2--CREB3L2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PSMG2^ENSG00000128789.21	chr18:12703028:+	CREB3L2^ENSG00000182158.15	chr7:138001690:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1340:20367:11033	.	NO_LDAS	0.0146	GT	1.5628	AG	1.371	"[""INTERCHROMOSOMAL[chr18--chr7]""]"	chr18:12703028-chr7:138001690	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PRSS36--SPRR2A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PRSS36^ENSG00000178226.11	chr16:31140564:-	SPRR2A^ENSG00000241794.2	chr1:153056591:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1148:21079:17703	.	NO_LDAS	0.0073	GT	1.7232	AG	1.8062	"[""INTERCHROMOSOMAL[chr16--chr1]""]"	chr16:31140564-chr1:153056591	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PRSS23--KDM3B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PRSS23^ENSG00000150687.12	chr11:86807965:+	KDM3B^ENSG00000120733.14	chr5:138393171:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:36863:3284	.	NO_LDAS	0.0146	GT	1.8062	AG	1.9329	"[""INTERCHROMOSOMAL[chr11--chr5]""]"	chr11:86807965-chr5:138393171	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PRRC2C--FN3K	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PRRC2C^ENSG00000117523.16	chr1:171568339:+	FN3K^ENSG00000167363.14	chr17:82750756:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:20610:16133	.	NO_LDAS	0.0146	GT	1.6895	AG	1.2419	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:171568339-chr17:82750756	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PRRC2A--CRAMP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PRRC2A^ENSG00000204469.13	chr6:31637136:+	CRAMP1^ENSG00000007545.16	chr16:1676731:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1436:32915:1154	.	NO_LDAS	0.0146	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr16]""]"	chr6:31637136-chr16:1676731	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PRKCZ--PANK4	1	0	1.0	0.0	ONLY_REF_SPLICE	PRKCZ^ENSG00000067606.17	chr1:2059591:+	PANK4^ENSG00000157881.16	chr1:2521800:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2136:11630:2289	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9656	"[""INTRACHROMOSOMAL[chr1:0.32Mb]""]"	chr1:2059591-chr1:2521800	False		0	Read count too low: 1 < 5	FAIL	1
PPP6R3--UBE4B	1	0	1.0	0.0	ONLY_REF_SPLICE	PPP6R3^ENSG00000110075.15	chr11:68460827:+	UBE4B^ENSG00000130939.20	chr1:10095461:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:47922:16526	.	NO_LDAS	0.0146	GT	1.8323	AG	1.9329	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:68460827-chr1:10095461	False		0	Read count too low: 1 < 5	FAIL	1
PPP6C--RPL35	1	0	1.0	0.0	ONLY_REF_SPLICE	PPP6C^ENSG00000119414.12	chr9:125153533:-	RPL35^ENSG00000136942.15	chr9:124860264:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1461:37041:1266	.	NO_LDAS	0.0146	GT	1.7968	AG	1.9086	"[""INTRACHROMOSOMAL[chr9:0.28Mb]""]"	chr9:125153533-chr9:124860264	True	read_through|ribosomal genes|RPL35	0	Blacklisted	FAIL	1
PPP3CA--PVT1	1	0	1.0	0.0	ONLY_REF_SPLICE	PPP3CA^ENSG00000138814.17	chr4:101195916:-	PVT1^ENSG00000249859.12	chr8:127989162:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2130:17156:24695	.	NO_LDAS	0.0146	GT	1.9656	AG	1.8256	"[""INTERCHROMOSOMAL[chr4--chr8]""]"	chr4:101195916-chr8:127989162	False		0	Read count too low: 1 < 5	FAIL	1
PPM1G--PRPF6	1	0	1.0	0.0	ONLY_REF_SPLICE	PPM1G^ENSG00000115241.11	chr2:27409303:-	PRPF6^ENSG00000101161.8	chr20:64016723:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1144:5296:5274	.	YES_LDAS	0.0146	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr20]""]"	chr2:27409303-chr20:64016723	False		0	Read count too low: 1 < 5	FAIL	1
POTEKP--SLFNL1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	POTEKP^ENSG00000204434.6	chr2:131626421:+	SLFNL1^ENSG00000171790.15	chr1:41020321:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1158:45770:12378	.	NO_LDAS	0.0048	GT	1.9899	AG	1.7465	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:131626421-chr1:41020321	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PNPT1--TRIM22	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PNPT1^ENSG00000138035.15	chr2:55636312:-	TRIM22^ENSG00000132274.16	chr11:5698315:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1123:23814:23980	.	NO_LDAS	0.0146	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr2--chr11]""]"	chr2:55636312-chr11:5698315	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PNN--SRXN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PNN^ENSG00000100941.9	chr14:39181594:+	SRXN1^ENSG00000271303.2	chr20:647530:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2116:43416:12168	.	NO_LDAS	0.0146	GT	1.9329	AG	1.4295	"[""INTERCHROMOSOMAL[chr14--chr20]""]"	chr14:39181594-chr20:647530	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PLEKHA8--HERC2	1	0	0.25	0.0	ONLY_REF_SPLICE	PLEKHA8^ENSG00000106086.20	chr7:30028802:+	HERC2^ENSG00000128731.18	chr15:28299516:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1127:23862:16357	.	YES_LDAS	0.0037	GT	1.9656	AG	1.9329	"[""INTERCHROMOSOMAL[chr7--chr15]""]"	chr7:30028802-chr15:28299516	False		0	Read count too low: 1 < 5	FAIL	1
PLAG1--RUFY1	1	0	0.25	0.0	INCL_NON_REF_SPLICE	PLAG1^ENSG00000181690.8	chr8:56167307:-	RUFY1^ENSG00000176783.15	chr5:179598805:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1326:20853:11173	.	NO_LDAS	0.0037	GT	1.9086	AG	1.6895	"[""INTERCHROMOSOMAL[chr8--chr5]""]"	chr8:56167307-chr5:179598805	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PKD1--TAF1C	1	0	0.14	0.0	ONLY_REF_SPLICE	PKD1^ENSG00000008710.20	chr16:2118676:-	TAF1C^ENSG00000103168.17	chr16:84184989:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2365:30423:5274	.	YES_LDAS	0.002	GT	1.7968	AG	1.9656	"[""INTRACHROMOSOMAL[chr16:82.04Mb]""]"	chr16:2118676-chr16:84184989	False		0	Read count too low: 1 < 5	FAIL	1
PKD1--CTSB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PKD1^ENSG00000008710.20	chr16:2091018:-	CTSB^ENSG00000164733.22	chr8:11847875:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2201:43157:22453	.	NO_LDAS	0.0146	GT	1.6895	AG	1.5656	"[""INTERCHROMOSOMAL[chr16--chr8]""]"	chr16:2091018-chr8:11847875	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
PIP4K2A--DOCK8	1	0	1.0	0.0	ONLY_REF_SPLICE	PIP4K2A^ENSG00000150867.14	chr10:22714183:-	DOCK8^ENSG00000107099.16	chr9:325671:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1208:50689:4895	.	YES_LDAS	0.0146	GT	1.9329	AG	1.8256	"[""INTERCHROMOSOMAL[chr10--chr9]""]"	chr10:22714183-chr9:325671	False		0	Read count too low: 1 < 5	FAIL	1
PIP4K2A--ATRNL1	1	0	1.0	0.0	ONLY_REF_SPLICE	PIP4K2A^ENSG00000150867.14	chr10:22714183:-	ATRNL1^ENSG00000107518.18	chr10:115426250:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2252:16015:22719	.	YES_LDAS	0.0146	GT	1.9329	AG	1.8892	"[""INTRACHROMOSOMAL[chr10:92.38Mb]""]"	chr10:22714183-chr10:115426250	False		0	Read count too low: 1 < 5	FAIL	1
PIKFYVE--IWS1	1	0	1.0	0.0	ONLY_REF_SPLICE	PIKFYVE^ENSG00000115020.17	chr2:208276830:+	IWS1^ENSG00000163166.15	chr2:127505752:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1330:42502:11789	.	YES_LDAS	0.0146	GT	1.4295	AG	1.7465	"[""INTRACHROMOSOMAL[chr2:80.74Mb]""]"	chr2:208276830-chr2:127505752	False		0	Read count too low: 1 < 5	FAIL	1
PIEZO1--NUPR1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	PIEZO1^ENSG00000103335.22	chr16:88727159:-	NUPR1^ENSG00000176046.9	chr16:28538868:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1189:22908:21878	.	NO_LDAS	0.0048	GT	1.7968	AG	1.3996	"[""INTRACHROMOSOMAL[chr16:60.18Mb]""]"	chr16:88727159-chr16:28538868	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PHF3--PNMA8A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PHF3^ENSG00000118482.12	chr6:63680161:+	PNMA8A^ENSG00000182013.18	chr19:46468527:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:49419:1911	.	NO_LDAS	0.0146	GT	1.9329	AG	1.4716	"[""INTERCHROMOSOMAL[chr6--chr19]""]"	chr6:63680161-chr19:46468527	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PHF3--PAK1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PHF3^ENSG00000118482.12	chr6:63636090:+	PAK1^ENSG00000149269.10	chr11:77473682:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2375:5166:17464	.	NO_LDAS	0.0146	GC	1.5058	AG	0.971	"[""INTERCHROMOSOMAL[chr6--chr11]""]"	chr6:63636090-chr11:77473682	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PHF12--SLC12A5	1	0	1.0	0.0	ONLY_REF_SPLICE	PHF12^ENSG00000109118.14	chr17:28950065:-	SLC12A5^ENSG00000124140.14	chr20:46038224:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1301:26225:23756	.	NO_LDAS	0.0146	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr20]""]"	chr17:28950065-chr20:46038224	False		0	Read count too low: 1 < 5	FAIL	1
PHETA1--RDH16	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PHETA1^ENSG00000198324.13	chr12:111365560:-	RDH16^ENSG00000139547.8	chr12:56954924:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2131:5361:2583	.	NO_LDAS	0.0146	GT	1.7968	AG	1.5329	"[""INTRACHROMOSOMAL[chr12:54.40Mb]""]"	chr12:111365560-chr12:56954924	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PFN1--GDF9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PFN1^ENSG00000108518.8	chr17:4948263:-	GDF9^ENSG00000164404.8	chr5:132861865:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1124:41126:12854	.	NO_LDAS	0.0146	GT	1.9329	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr5]""]"	chr17:4948263-chr5:132861865	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PFKFB3--ENTPD1	1	0	1.0	0.0	ONLY_REF_SPLICE	PFKFB3^ENSG00000170525.21	chr10:6226365:+	ENTPD1^ENSG00000138185.20	chr10:95823237:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2453:27786:16287	.	NO_LDAS	0.0146	GT	1.9329	AG	1.8892	"[""INTRACHROMOSOMAL[chr10:89.46Mb]""]"	chr10:6226365-chr10:95823237	False		0	Read count too low: 1 < 5	FAIL	1
PEPD--CCSER2	1	0	1.0	0.0	ONLY_REF_SPLICE	PEPD^ENSG00000124299.15	chr19:33462995:-	CCSER2^ENSG00000107771.17	chr10:84513449:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:7998:12084	.	YES_LDAS	0.0146	GT	1.5656	AG	1.9086	"[""INTERCHROMOSOMAL[chr19--chr10]""]"	chr19:33462995-chr10:84513449	False		0	Read count too low: 1 < 5	FAIL	1
PDLIM7--STARD13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PDLIM7^ENSG00000196923.14	chr5:177490870:-	STARD13^ENSG00000133121.21	chr13:33285630:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2254:33344:18375	.	YES_LDAS	0.0146	GT	1.8295	AG	1.9086	"[""INTERCHROMOSOMAL[chr5--chr13]""]"	chr5:177490870-chr13:33285630	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PDLIM7--GRK6	1	0	1.0	0.0	ONLY_REF_SPLICE	PDLIM7^ENSG00000196923.14	chr5:177492405:-	GRK6^ENSG00000198055.11	chr5:177441737:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2198:49888:14186	.	NO_LDAS	0.0146	GT	1.5301	AG	1.9329	"[""INTRACHROMOSOMAL[chr5:0.04Mb]"",""LOCAL_INVERSION:-:+:[40493]""]"	chr5:177492405-chr5:177441737	False		0	Read count too low: 1 < 5	FAIL	1
PDE4DIP--NCAPD3	1	0	1.0	0.0	ONLY_REF_SPLICE	PDE4DIP^ENSG00000178104.19	chr1:149032049:+	NCAPD3^ENSG00000151503.13	chr11:134204971:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1181:13305:23209	.	YES_LDAS	0.0146	GT	1.3383	AG	1.9329	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:149032049-chr11:134204971	False		0	Read count too low: 1 < 5	FAIL	1
PDE4DIP--GRIP2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PDE4DIP^ENSG00000178104.19	chr1:148966644:+	GRIP2^ENSG00000144596.13	chr3:14556044:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1373:37276:5792	.	NO_LDAS	0.0073	GT	1.7968	AG	1.7968	"[""INTERCHROMOSOMAL[chr1--chr3]""]"	chr1:148966644-chr3:14556044	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PCNX1--TATDN2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PCNX1^ENSG00000100731.16	chr14:70995791:+	TATDN2^ENSG00000157014.11	chr3:10248400:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2438:45139:19076	.	NO_LDAS	0.0073	GT	1.9086	AG	1.371	"[""INTERCHROMOSOMAL[chr14--chr3]""]"	chr14:70995791-chr3:10248400	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PCNT--PHC2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PCNT^ENSG00000160299.17	chr21:46432181:+	PHC2^ENSG00000134686.18	chr1:33430995:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2351:47736:29627	.	NO_LDAS	0.0146	GT	1.7465	AG	1.4566	"[""INTERCHROMOSOMAL[chr21--chr1]""]"	chr21:46432181-chr1:33430995	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PCED1B--FCHSD2	1	0	1.0	0.0	ONLY_REF_SPLICE	PCED1B^ENSG00000179715.13	chr12:47216689:+	FCHSD2^ENSG00000137478.15	chr11:72840959:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1467:20181:3256	.	YES_LDAS	0.0146	GT	1.8323	AG	1.8295	"[""INTERCHROMOSOMAL[chr12--chr11]""]"	chr12:47216689-chr11:72840959	False		0	Read count too low: 1 < 5	FAIL	1
PCDH11X--TMEM249	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PCDH11X^ENSG00000102290.22	chrX:92620494:+	TMEM249^ENSG00000261587.2	chr8:144354623:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2495:19809:1855	.	NO_LDAS	0.0146	GT	0.6998	AG	1.7819	"[""INTERCHROMOSOMAL[chrX--chr8]""]"	chrX:92620494-chr8:144354623	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PAX5--EBLN3P	1	0	1.0	0.0	ONLY_REF_SPLICE	PAX5^ENSG00000196092.14	chr9:36966549:-	EBLN3P^ENSG00000281649.2	chr9:37086668:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1190:29355:2864	.	NO_LDAS	0.0146	GT	1.8256	AG	1.9086	"[""INTRACHROMOSOMAL[chr9:0.05Mb]"",""LOCAL_INVERSION:-:+:[45377]""]"	chr9:36966549-chr9:37086668	False		0	Read count too low: 1 < 5	FAIL	1
PAX5--AL137026.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PAX5^ENSG00000196092.14	chr9:36882004:-	AL137026.3^ENSG00000287901.1	chr10:44310145:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1412:36960:11075	.	NO_LDAS	0.0146	GT	1.8295	AG	1.7232	"[""INTERCHROMOSOMAL[chr9--chr10]""]"	chr9:36882004-chr10:44310145	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PARP9--MTMR2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PARP9^ENSG00000138496.16	chr3:122555282:-	MTMR2^ENSG00000087053.20	chr11:95830556:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2277:42032:1420	.	NO_LDAS	0.0146	GT	1.8323	AG	1.5656	"[""INTERCHROMOSOMAL[chr3--chr11]""]"	chr3:122555282-chr11:95830556	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PARP10--FLII	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PARP10^ENSG00000178685.14	chr8:143983646:-	FLII^ENSG00000177731.16	chr17:18246725:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:2375:4895	.	NO_LDAS	0.0146	GT	1.8892	AG	1.5219	"[""INTERCHROMOSOMAL[chr8--chr17]""]"	chr8:143983646-chr17:18246725	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PARD3B--SMARCE1P6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PARD3B^ENSG00000116117.18	chr2:205193320:+	SMARCE1P6^ENSG00000214465.3	chr2:26149694:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1254:9341:25872	.	NO_LDAS	0.0146	GT	1.9656	AG	1.7819	"[""INTRACHROMOSOMAL[chr2:178.39Mb]""]"	chr2:205193320-chr2:26149694	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PABPN1P2--TAF5L	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PABPN1P2^ENSG00000255875.2	chr19:52809847:+	TAF5L^ENSG00000135801.10	chr1:229625925:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1365:51417:27848	.	NO_LDAS	0.0146	GT	1.2419	AG	0.8366	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:52809847-chr1:229625925	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PABPN1P2--KCTD12	1	0	0.33	0.0	INCL_NON_REF_SPLICE	PABPN1P2^ENSG00000255875.2	chr19:52809847:+	KCTD12^ENSG00000178695.6	chr13:76886304:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1349:2893:26306	.	NO_LDAS	0.0048	GT	1.2419	AG	1.2419	"[""INTERCHROMOSOMAL[chr19--chr13]""]"	chr19:52809847-chr13:76886304	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
OSBPL2--PHACTR4	1	0	1.0	0.0	ONLY_REF_SPLICE	OSBPL2^ENSG00000130703.17	chr20:62272259:+	PHACTR4^ENSG00000204138.13	chr1:28476107:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1336:16897:27385	.	YES_LDAS	0.0146	GT	1.7968	AG	1.8892	"[""INTERCHROMOSOMAL[chr20--chr1]""]"	chr20:62272259-chr1:28476107	False		0	Read count too low: 1 < 5	FAIL	1
OR56A1--VPS13C	1	0	0.33	0.0	INCL_NON_REF_SPLICE	OR56A1^ENSG00000180934.7	chr11:6022596:-	VPS13C^ENSG00000129003.19	chr15:61910305:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1339:7553:6773	.	NO_LDAS	0.0048	GT	1.7232	AG	1.7465	"[""INTERCHROMOSOMAL[chr11--chr15]""]"	chr11:6022596-chr15:61910305	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
OCA2--AC021979.2	1	0	1.0	0.0	ONLY_REF_SPLICE	OCA2^ENSG00000104044.16	chr15:27844959:-	AC021979.2^ENSG00000258853.1	chr15:27685768:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1293:37818:23378	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9086	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr15:0.07Mb]"",""NEIGHBORS[69107]""]"	chr15:27844959-chr15:27685768	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
OBSCN--SCO2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	OBSCN^ENSG00000154358.23	chr1:228215098:+	SCO2^ENSG00000284194.3	chr22:50523777:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2151:24283:17983	.	NO_LDAS	0.0146	GT	1.9086	AG	1.8062	"[""INTERCHROMOSOMAL[chr1--chr22]""]"	chr1:228215098-chr22:50523777	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
OBSCN--C6orf132	1	0	1.0	0.0	INCL_NON_REF_SPLICE	OBSCN^ENSG00000154358.23	chr1:228302810:+	C6orf132^ENSG00000188112.9	chr6:42105993:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:16225:23532	.	NO_LDAS	0.0146	GT	1.9899	AG	1.6895	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:228302810-chr6:42105993	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
OAZ1--PPP1R12C	1	0	1.0	0.0	ONLY_REF_SPLICE	OAZ1^ENSG00000104904.12	chr19:2269744:+	PPP1R12C^ENSG00000125503.13	chr19:55096335:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:37955:13191	.	NO_LDAS	0.0146	GT	1.7819	AG	1.7968	"[""INTRACHROMOSOMAL[chr19:52.82Mb]""]"	chr19:2269744-chr19:55096335	False		0	Read count too low: 1 < 5	FAIL	1
NUDCD3--AKAP9	1	0	1.0	0.0	ONLY_REF_SPLICE	NUDCD3^ENSG00000015676.18	chr7:44484968:-	AKAP9^ENSG00000127914.19	chr7:91992885:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:37130:18375	.	YES_LDAS	0.0146	GT	1.8062	AG	1.5656	"[""INTRACHROMOSOMAL[chr7:47.45Mb]""]"	chr7:44484968-chr7:91992885	False		0	Read count too low: 1 < 5	FAIL	1
NSD3--CACNA2D1	1	0	1.0	0.0	ONLY_REF_SPLICE	NSD3^ENSG00000147548.17	chr8:38331431:-	CACNA2D1^ENSG00000153956.16	chr7:81982627:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1342:31588:8553	.	NO_LDAS	0.0146	GT	1.7232	AG	1.9656	"[""INTERCHROMOSOMAL[chr8--chr7]""]"	chr8:38331431-chr7:81982627	False		0	Read count too low: 1 < 5	FAIL	1
NSD1--MGAT4C	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NSD1^ENSG00000165671.21	chr5:177238507:+	MGAT4C^ENSG00000182050.13	chr12:85977101:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1388:4066:1098	.	NO_LDAS	0.0146	GT	1.9219	AG	1.5546	"[""INTERCHROMOSOMAL[chr5--chr12]""]"	chr5:177238507-chr12:85977101	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NRDE2--MIDN	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NRDE2^ENSG00000119720.18	chr14:90278610:-	MIDN^ENSG00000167470.12	chr19:1254384:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2260:10239:3774	.	NO_LDAS	0.0146	GT	1.7968	AG	1.5546	"[""INTERCHROMOSOMAL[chr14--chr19]""]"	chr14:90278610-chr19:1254384	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NPB--SEPTIN6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NPB^ENSG00000183979.8	chr17:81901886:+	SEPTIN6^ENSG00000125354.24	chrX:119637195:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1304:51603:29543	.	NO_LDAS	0.0146	GT	1.8295	AG	1.9329	"[""INTERCHROMOSOMAL[chr17--chrX]""]"	chr17:81901886-chrX:119637195	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NOTCH2NLA--EPB41	1	0	0.33	0.0	INCL_NON_REF_SPLICE	NOTCH2NLA^ENSG00000264343.6	chr1:146156139:-	EPB41^ENSG00000159023.22	chr1:28987431:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1194:30561:26194	.	YES_LDAS	0.0048	GT	1.8295	AG	1.6895	"[""INTRACHROMOSOMAL[chr1:117.03Mb]""]"	chr1:146156139-chr1:28987431	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NIT2--TMEM231	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NIT2^ENSG00000114021.12	chr3:100335056:+	TMEM231^ENSG00000205084.11	chr16:75556040:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1246:28967:8749	.	NO_LDAS	0.0146	GT	1.231	AG	1.2729	"[""INTERCHROMOSOMAL[chr3--chr16]""]"	chr3:100335056-chr16:75556040	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NFX1--RNF38	1	0	1.0	0.0	ONLY_REF_SPLICE	NFX1^ENSG00000086102.19	chr9:33290597:+	RNF38^ENSG00000137075.18	chr9:36376127:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2257:39428:20253	.	NO_LDAS	0.0146	GT	1.7465	AG	1.8892	"[""INTRACHROMOSOMAL[chr9:2.97Mb]""]"	chr9:33290597-chr9:36376127	False		0	Read count too low: 1 < 5	FAIL	1
NEK4--RN7SL49P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NEK4^ENSG00000114904.13	chr3:52749760:-	RN7SL49P^ENSG00000265802.2	chr13:45002205:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1121:40811:8160	.	YES_LDAS	0.0146	GT	1.6729	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr13]""]"	chr3:52749760-chr13:45002205	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
NEK1--SEPSECS	1	0	1.0	0.0	ONLY_REF_SPLICE	NEK1^ENSG00000137601.17	chr4:169576928:-	SEPSECS^ENSG00000109618.13	chr4:25159107:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1321:24930:23055	.	NO_LDAS	0.0146	GT	1.3753	AG	1.8892	"[""INTRACHROMOSOMAL[chr4:144.23Mb]""]"	chr4:169576928-chr4:25159107	False		0	Read count too low: 1 < 5	FAIL	1
NDOR1--TRPM4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NDOR1^ENSG00000188566.14	chr9:137206309:+	TRPM4^ENSG00000130529.16	chr19:49159214:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2442:7148:24485	.	YES_LDAS	0.0146	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr9--chr19]""]"	chr9:137206309-chr19:49159214	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NCSTN--PACRG-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NCSTN^ENSG00000162736.17	chr1:160343468:+	PACRG-AS1^ENSG00000281692.2	chr6:163308789:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1439:32260:16526	.	NO_LDAS	0.0146	GT	1.3996	AG	1.7056	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:160343468-chr6:163308789	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NCLN--LZTFL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NCLN^ENSG00000125912.11	chr19:3186126:+	LZTFL1^ENSG00000163818.18	chr3:45842013:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1132:24291:12672	.	NO_LDAS	0.0146	GT	1.5656	AG	1.3996	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:3186126-chr3:45842013	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NAV1--KLC1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NAV1^ENSG00000134369.15	chr1:201783852:+	KLC1^ENSG00000126214.21	chr14:103709674:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2358:25294:8356	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr1--chr14]""]"	chr1:201783852-chr14:103709674	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NAPA--ARHGAP35	1	0	1.0	0.0	ONLY_REF_SPLICE	NAPA^ENSG00000105402.8	chr19:47514843:-	ARHGAP35^ENSG00000160007.19	chr19:46999304:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2308:26645:12826	.	YES_LDAS	0.0146	GT	1.5656	AG	1.8062	"[""INTRACHROMOSOMAL[chr19:0.48Mb]""]"	chr19:47514843-chr19:46999304	False		0	Read count too low: 1 < 5	FAIL	1
NAP1L1--NFATC3	1	0	1.0	0.0	ONLY_REF_SPLICE	NAP1L1^ENSG00000187109.15	chr12:76074203:-	NFATC3^ENSG00000072736.19	chr16:68121987:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1310:46717:17633	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9899	"[""INTERCHROMOSOMAL[chr12--chr16]""]"	chr12:76074203-chr16:68121987	False		0	Read count too low: 1 < 5	FAIL	1
N4BP2L2--ARHGAP24	1	0	1.0	0.0	ONLY_REF_SPLICE	N4BP2L2^ENSG00000244754.9	chr13:32517857:-	ARHGAP24^ENSG00000138639.18	chr4:85923648:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2210:36378:1546	.	YES_LDAS	0.0146	GT	1.4295	AG	1.8892	"[""INTERCHROMOSOMAL[chr13--chr4]""]"	chr13:32517857-chr4:85923648	False		0	Read count too low: 1 < 5	FAIL	1
MYBL2--KL	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MYBL2^ENSG00000101057.16	chr20:43673899:+	KL^ENSG00000133116.8	chr13:33061726:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2452:46239:19692	.	NO_LDAS	0.0146	GT	1.8892	AG	1.8062	"[""INTERCHROMOSOMAL[chr20--chr13]""]"	chr20:43673899-chr13:33061726	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MYBBP1A--BAZ2A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MYBBP1A^ENSG00000132382.15	chr17:4545136:-	BAZ2A^ENSG00000076108.12	chr12:56613192:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2262:40034:1182	.	NO_LDAS	0.0146	GT	1.7465	AG	1.8295	"[""INTERCHROMOSOMAL[chr17--chr12]""]"	chr17:4545136-chr12:56613192	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MTMR3--PTK2	1	0	1.0	0.0	ONLY_REF_SPLICE	MTMR3^ENSG00000100330.16	chr22:29883359:+	PTK2^ENSG00000169398.19	chr8:140764290:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1141:11371:19552	.	YES_LDAS	0.0146	GT	1.8062	AG	1.7465	"[""INTERCHROMOSOMAL[chr22--chr8]""]"	chr22:29883359-chr8:140764290	False		0	Read count too low: 1 < 5	FAIL	1
MTMR10--SCAPER	1	0	1.0	0.0	ONLY_REF_SPLICE	MTMR10^ENSG00000166912.17	chr15:30990777:-	SCAPER^ENSG00000140386.13	chr15:76804633:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2268:51797:3873	.	NO_LDAS	0.0146	GT	1.9086	AG	1.8062	"[""INTRACHROMOSOMAL[chr15:45.36Mb]""]"	chr15:30990777-chr15:76804633	False		0	Read count too low: 1 < 5	FAIL	1
MTAP--KDM4C	1	0	1.0	0.0	ONLY_REF_SPLICE	MTAP^ENSG00000099810.21	chr9:21859425:+	KDM4C^ENSG00000107077.19	chr9:6849507:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1156:36507:20883	.	NO_LDAS	0.0146	GT	1.9086	AG	1.4566	"[""INTRACHROMOSOMAL[chr9:14.63Mb]""]"	chr9:21859425-chr9:6849507	False		0	Read count too low: 1 < 5	FAIL	1
MTA1--CRLF3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MTA1^ENSG00000182979.18	chr14:105454315:+	CRLF3^ENSG00000176390.12	chr17:30793518:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1157:35188:24821	.	NO_LDAS	0.0146	GT	1.5058	AG	1.7465	"[""INTERCHROMOSOMAL[chr14--chr17]""]"	chr14:105454315-chr17:30793518	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MRPS11--RUNDC3B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MRPS11^ENSG00000181991.16	chr15:88475239:+	RUNDC3B^ENSG00000105784.15	chr7:87770711:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1204:26386:3802	.	NO_LDAS	0.0146	GT	1.7819	AG	1.5546	"[""INTERCHROMOSOMAL[chr15--chr7]""]"	chr15:88475239-chr7:87770711	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MRPL23--SLC9A3R2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MRPL23^ENSG00000214026.11	chr11:1956554:+	SLC9A3R2^ENSG00000065054.14	chr16:2032802:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1398:14001:29347	.	NO_LDAS	0.0146	GC	1.7232	AG	1.6402	"[""INTERCHROMOSOMAL[chr11--chr16]""]"	chr11:1956554-chr16:2032802	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MRI1--FAM189A1	1	0	1.0	0.0	ONLY_REF_SPLICE	MRI1^ENSG00000037757.14	chr19:13768447:+	FAM189A1^ENSG00000104059.4	chr15:29252478:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:4018:16147	.	YES_LDAS	0.0146	GT	1.7465	AG	1.7465	"[""INTERCHROMOSOMAL[chr19--chr15]""]"	chr19:13768447-chr15:29252478	False		0	Read count too low: 1 < 5	FAIL	1
MLLT10--MLLT6	1	0	1.0	0.0	ONLY_REF_SPLICE	MLLT10^ENSG00000078403.17	chr10:21534804:+	MLLT6^ENSG00000275023.5	chr17:38706950:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1112:36984:28632	.	YES_LDAS	0.0146	GT	1.9656	AG	1.9329	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr10--chr17]""]"	chr10:21534804-chr17:38706950	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
MIR29B2CHG--IRF6	1	0	1.0	0.0	ONLY_REF_SPLICE	MIR29B2CHG^ENSG00000203709.12	chr1:207817239:-	IRF6^ENSG00000117595.12	chr1:209796552:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2365:45705:6157	.	YES_LDAS	0.0146	GT	1.6729	AG	1.8295	"[""INTRACHROMOSOMAL[chr1:1.91Mb]""]"	chr1:207817239-chr1:209796552	False		0	Read count too low: 1 < 5	FAIL	1
MIDEAS--TMEM127	1	0	0.5	0.0	INCL_NON_REF_SPLICE	MIDEAS^ENSG00000156030.13	chr14:73721399:-	TMEM127^ENSG00000135956.9	chr2:96250196:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1380:37356:20589	.	NO_LDAS	0.0073	GT	0.8366	AG	1.5656	"[""INTERCHROMOSOMAL[chr14--chr2]""]"	chr14:73721399-chr2:96250196	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MGAT4B--G0S2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MGAT4B^ENSG00000161013.17	chr5:179800514:-	G0S2^ENSG00000123689.6	chr1:209675673:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:12366:11523	.	NO_LDAS	0.0146	GT	1.7232	AG	1.8256	"[""INTERCHROMOSOMAL[chr5--chr1]""]"	chr5:179800514-chr1:209675673	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
METTL22--ZNF283	1	0	1.0	0.0	ONLY_REF_SPLICE	METTL22^ENSG00000067365.15	chr16:8644725:+	ZNF283^ENSG00000167637.18	chr19:43833505:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2401:49629:29599	.	YES_LDAS	0.0146	GT	1.8295	AG	1.9329	"[""INTERCHROMOSOMAL[chr16--chr19]""]"	chr16:8644725-chr19:43833505	False		0	Read count too low: 1 < 5	FAIL	1
METRNL--NOC4L	1	0	1.0	0.0	ONLY_REF_SPLICE	METRNL^ENSG00000176845.13	chr17:83079985:+	NOC4L^ENSG00000184967.7	chr12:132150981:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1373:21128:28436	.	YES_LDAS	0.0146	GT	1.6402	AG	1.5628	"[""INTERCHROMOSOMAL[chr17--chr12]""]"	chr17:83079985-chr12:132150981	False		0	Read count too low: 1 < 5	FAIL	1
MESD--AC114488.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MESD^ENSG00000117899.11	chr15:80948780:-	AC114488.1^ENSG00000229167.2	chr1:31572121:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2249:1178:5876	.	NO_LDAS	0.0146	GT	1.6402	AG	1.7819	"[""INTERCHROMOSOMAL[chr15--chr1]""]"	chr15:80948780-chr1:31572121	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MDFIC--PCCA	1	0	1.0	0.0	ONLY_REF_SPLICE	MDFIC^ENSG00000135272.12	chr7:114979781:+	PCCA^ENSG00000175198.17	chr13:100209332:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2330:15667:7432	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr7--chr13]""]"	chr7:114979781-chr13:100209332	False		0	Read count too low: 1 < 5	FAIL	1
MDFIC--CCDC91	1	0	1.0	0.0	ONLY_REF_SPLICE	MDFIC^ENSG00000135272.12	chr7:114942397:+	CCDC91^ENSG00000123106.10	chr12:28484052:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2187:7432:6759	.	YES_LDAS	0.0146	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr12]""]"	chr7:114942397-chr12:28484052	False		0	Read count too low: 1 < 5	FAIL	1
MCRIP1--C11orf49	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MCRIP1^ENSG00000225663.8	chr17:81823455:-	C11orf49^ENSG00000149179.14	chr11:47164250:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1129:30795:29067	.	NO_LDAS	0.0146	GT	1.4716	AG	1.6402	"[""INTERCHROMOSOMAL[chr17--chr11]""]"	chr17:81823455-chr11:47164250	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MCPH1--ELMO1	1	0	1.0	0.0	ONLY_REF_SPLICE	MCPH1^ENSG00000147316.13	chr8:6499929:+	ELMO1^ENSG00000155849.16	chr7:36895017:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1265:51029:16750	.	YES_LDAS	0.0146	GT	1.6402	AG	1.7465	"[""INTERCHROMOSOMAL[chr8--chr7]""]"	chr8:6499929-chr7:36895017	False		0	Read count too low: 1 < 5	FAIL	1
MCPH1--CHAF1A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MCPH1^ENSG00000147316.13	chr8:6414883:+	CHAF1A^ENSG00000167670.16	chr19:4409460:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2229:40293:18782	.	NO_LDAS	0.0146	GT	1.8892	AG	1.7968	"[""INTERCHROMOSOMAL[chr8--chr19]""]"	chr8:6414883-chr19:4409460	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MC2R--HNRNPH1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MC2R^ENSG00000185231.5	chr18:13885063:-	HNRNPH1^ENSG00000169045.17	chr5:179617110:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1271:29954:28422	.	NO_LDAS	0.0146	GT	1.6895	AG	1.8295	"[""INTERCHROMOSOMAL[chr18--chr5]""]"	chr18:13885063-chr5:179617110	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MBD3--DPP9	1	0	1.0	0.0	ONLY_REF_SPLICE	MBD3^ENSG00000071655.18	chr19:1585055:-	DPP9^ENSG00000142002.18	chr19:4700277:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1114:46150:15671	.	YES_LDAS	0.0146	GT	1.9086	AG	1.7819	"[""INTRACHROMOSOMAL[chr19:3.08Mb]""]"	chr19:1585055-chr19:4700277	False		0	Read count too low: 1 < 5	FAIL	1
MAP4K4--SMG1P1	1	0	1.0	0.0	ONLY_REF_SPLICE	MAP4K4^ENSG00000071054.16	chr2:101698538:+	SMG1P1^ENSG00000237296.9	chr16:22451620:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1273:14963:22271	.	YES_LDAS	0.0146	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr2--chr16]""]"	chr2:101698538-chr16:22451620	False		0	Read count too low: 1 < 5	FAIL	1
MAP3K4-AS1--AHDC1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	MAP3K4-AS1^ENSG00000272841.1	chr6:160991701:-	AHDC1^ENSG00000126705.15	chr1:27604136:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1464:51579:20141	.	NO_LDAS	0.0048	GC	0.9183	AG	0.9183	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:160991701-chr1:27604136	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAP3K11--MATK	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAP3K11^ENSG00000173327.8	chr11:65608268:-	MATK^ENSG00000007264.15	chr19:3778566:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1276:50090:19524	.	NO_LDAS	0.0146	GT	1.9219	AG	1.4295	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:65608268-chr19:3778566	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAP2K1--SESN1	1	0	1.0	0.0	ONLY_REF_SPLICE	MAP2K1^ENSG00000169032.10	chr15:66444707:+	SESN1^ENSG00000080546.13	chr6:109002343:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1264:31459:28226	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr15--chr6]""]"	chr15:66444707-chr6:109002343	False		0	Read count too low: 1 < 5	FAIL	1
MAP2K1--HTT	1	0	1.0	0.0	ONLY_REF_SPLICE	MAP2K1^ENSG00000169032.10	chr15:66444707:+	HTT^ENSG00000197386.13	chr4:3086939:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:33222:8973	.	NO_LDAS	0.0146	GT	1.8892	AG	1.7232	"[""INTERCHROMOSOMAL[chr15--chr4]""]"	chr15:66444707-chr4:3086939	False		0	Read count too low: 1 < 5	FAIL	1
MAD1L1--AC003102.1	1	0	1.0	0.0	ONLY_REF_SPLICE	MAD1L1^ENSG00000002822.16	chr7:1898200:-	AC003102.1^ENSG00000260793.2	chr17:44222462:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1249:51109:7362	.	NO_LDAS	0.0146	GT	1.9086	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr17]""]"	chr7:1898200-chr17:44222462	False		0	Read count too low: 1 < 5	FAIL	1
MACO1--ETS2	1	0	1.0	0.0	ONLY_REF_SPLICE	MACO1^ENSG00000204178.11	chr1:25431178:+	ETS2^ENSG00000157557.13	chr21:38819503:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1175:47178:23392	.	YES_LDAS	0.0146	GT	1.9219	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr21]""]"	chr1:25431178-chr21:38819503	False		0	Read count too low: 1 < 5	FAIL	1
MACF1--DST	1	0	1.0	0.0	ONLY_REF_SPLICE	MACF1^ENSG00000127603.30	chr1:39254375:+	DST^ENSG00000151914.21	chr6:56699745:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1464:10441:6703	.	NO_LDAS	0.0146	GT	1.8062	AG	1.5656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:39254375-chr6:56699745	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
LYPLA1--SPIRE1	1	0	1.0	0.0	ONLY_REF_SPLICE	LYPLA1^ENSG00000120992.18	chr8:54100908:-	SPIRE1^ENSG00000134278.15	chr18:12635096:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2186:51385:21990	.	YES_LDAS	0.0146	GT	1.8062	AG	1.5656	"[""INTERCHROMOSOMAL[chr8--chr18]""]"	chr8:54100908-chr18:12635096	False		0	Read count too low: 1 < 5	FAIL	1
LUC7L3--MALAT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LUC7L3^ENSG00000108848.16	chr17:50750878:+	MALAT1^ENSG00000251562.8	chr11:65499082:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2218:48618:28044	.	YES_LDAS	0.0146	GT	1.7232	AG	1.5546	"[""INTERCHROMOSOMAL[chr17--chr11]""]"	chr17:50750878-chr11:65499082	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LUC7L2--SNED1	1	0	1.0	0.0	ONLY_REF_SPLICE	LUC7L2^ENSG00000146963.18	chr7:139417729:+	SNED1^ENSG00000162804.14	chr2:241030284:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2357:15028:18067	.	YES_LDAS	0.0146	GT	1.7819	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr2]""]"	chr7:139417729-chr2:241030284	False		0	Read count too low: 1 < 5	FAIL	1
LRBA--IRS4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	LRBA^ENSG00000198589.14	chr4:150851929:-	IRS4^ENSG00000133124.12	chrX:108730536:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2161:8103:16217	.	NO_LDAS	0.0073	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr4--chrX]""]"	chr4:150851929-chrX:108730536	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LPCAT1--LMO7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LPCAT1^ENSG00000153395.10	chr5:1501470:-	LMO7^ENSG00000136153.20	chr13:75841728:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2281:15360:15839	.	NO_LDAS	0.0146	GT	1.4716	AG	1.5301	"[""INTERCHROMOSOMAL[chr5--chr13]""]"	chr5:1501470-chr13:75841728	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC02802--UBAC2	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC02802^ENSG00000232527.8	chr1:144250225:-	UBAC2^ENSG00000134882.16	chr13:99238427:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:27568:2597	.	NO_LDAS	0.0146	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr13]""]"	chr1:144250225-chr13:99238427	False		0	Read count too low: 1 < 5	FAIL	1
LINC02693--TXNIP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC02693^ENSG00000212719.13	chr17:21551066:-	TXNIP^ENSG00000265972.6	chr1:145994345:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1308:46789:9435	.	YES_LDAS	0.0146	GT	1.8892	AG	1.8062	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:21551066-chr1:145994345	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC02506--SNX4	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC02506^ENSG00000251129.2	chr4:32155406:+	SNX4^ENSG00000114520.11	chr3:125504744:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2145:26386:11369	.	YES_LDAS	0.0146	GT	1.9329	AG	1.6729	"[""INTERCHROMOSOMAL[chr4--chr3]""]"	chr4:32155406-chr3:125504744	False		0	Read count too low: 1 < 5	FAIL	1
LINC02031--HECTD1	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC02031^ENSG00000238837.3	chr3:182645024:+	HECTD1^ENSG00000092148.13	chr14:31133675:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1327:17075:7067	.	YES_LDAS	0.0146	GT	1.7465	AG	1.9899	"[""INTERCHROMOSOMAL[chr3--chr14]""]"	chr3:182645024-chr14:31133675	False		0	Read count too low: 1 < 5	FAIL	1
LINC01741--LTB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01741^ENSG00000236720.2	chr1:177700800:+	LTB^ENSG00000227507.3	chr6:31581619:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1169:39824:14270	.	NO_LDAS	0.0146	GT	1.9656	AG	1.7465	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:177700800-chr6:31581619	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01278--HDAC8	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC01278^ENSG00000235437.8	chrX:63399781:-	HDAC8^ENSG00000147099.21	chrX:72495268:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1268:9729:23994	.	NO_LDAS	0.0146	GT	1.9899	AG	1.9086	"[""INTRACHROMOSOMAL[chrX:8.77Mb]""]"	chrX:63399781-chrX:72495268	False		0	Read count too low: 1 < 5	FAIL	1
LINC00683--GPAA1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC00683^ENSG00000266256.3	chr18:76619975:+	GPAA1^ENSG00000197858.11	chr8:144085117:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1377:38926:6857	.	NO_LDAS	0.0146	GT	1.5546	AG	1.4716	"[""INTERCHROMOSOMAL[chr18--chr8]""]"	chr18:76619975-chr8:144085117	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC00299--RBM33	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC00299^ENSG00000236790.6	chr2:8287338:-	RBM33^ENSG00000184863.11	chr7:155763809:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1133:20732:5246	.	YES_LDAS	0.0146	GT	1.9656	AG	1.3996	"[""INTERCHROMOSOMAL[chr2--chr7]""]"	chr2:8287338-chr7:155763809	False		0	Read count too low: 1 < 5	FAIL	1
LINC00271--ANXA11	1	0	0.5	0.0	INCL_NON_REF_SPLICE	LINC00271^ENSG00000231028.9	chr6:135525936:+	ANXA11^ENSG00000122359.18	chr10:80157756:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2407:44557:23027	.	NO_LDAS	0.0073	GT	1.8062	AG	1.5058	"[""INTERCHROMOSOMAL[chr6--chr10]""]"	chr6:135525936-chr10:80157756	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LAMP2--TMEM132B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	LAMP2^ENSG00000005893.16	chrX:120438698:-	TMEM132B^ENSG00000139364.10	chr12:125587205:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1169:5296:13849	.	YES_LDAS	0.0073	GT	0.9968	AG	1.2867	"[""INTERCHROMOSOMAL[chrX--chr12]""]"	chrX:120438698-chr12:125587205	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LAMA5--ZBTB48	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LAMA5^ENSG00000130702.15	chr20:62366949:-	ZBTB48^ENSG00000204859.13	chr1:6580676:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1497:10239:10640	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9086	"[""INTERCHROMOSOMAL[chr20--chr1]""]"	chr20:62366949-chr1:6580676	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
KRT6A--KRT8P10	1	0	0.14	0.0	INCL_NON_REF_SPLICE	KRT6A^ENSG00000205420.11	chr12:52491112:-	KRT8P10^ENSG00000231203.1	chr2:183071980:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1222:44435:3873	.	NO_LDAS	0.002	GT	1.9086	AG	1.6049	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:52491112-chr2:183071980	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KLHDC8A--AC025040.2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	KLHDC8A^ENSG00000162873.15	chr1:205343225:-	AC025040.2^ENSG00000259388.1	chr15:49794769:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1152:23110:17717	.	NO_LDAS	0.0073	GT	1.5656	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr15]""]"	chr1:205343225-chr15:49794769	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KLF7--KLF6	1	0	1.0	0.0	ONLY_REF_SPLICE	KLF7^ENSG00000118263.15	chr2:207088458:-	KLF6^ENSG00000067082.15	chr10:3779590:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:46781:27946	.	NO_LDAS	0.0146	GT	1.7819	AG	1.7465	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr2--chr10]""]"	chr2:207088458-chr10:3779590	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
KLF3P1--CLUH	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KLF3P1^ENSG00000253218.1	chr5:172255052:-	CLUH^ENSG00000132361.18	chr17:2696538:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1276:14389:25143	.	NO_LDAS	0.0146	GC	1.9329	AG	1.7465	"[""INTERCHROMOSOMAL[chr5--chr17]""]"	chr5:172255052-chr17:2696538	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KLF10--PPP1R9B	1	0	0.17	0.0	INCL_NON_REF_SPLICE	KLF10^ENSG00000155090.15	chr8:102654010:-	PPP1R9B^ENSG00000108819.11	chr17:50149259:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:13620:25942	.	NO_LDAS	0.0025	GT	1.3383	AG	1.6729	"[""INTERCHROMOSOMAL[chr8--chr17]""]"	chr8:102654010-chr17:50149259	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KIAA1143--CRELD2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KIAA1143^ENSG00000163807.6	chr3:44751277:-	CRELD2^ENSG00000184164.15	chr22:49920160:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2275:4325:15671	.	NO_LDAS	0.0146	GT	1.8256	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr22]""]"	chr3:44751277-chr22:49920160	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KDM7A--SND1	1	0	1.0	0.0	ONLY_REF_SPLICE	KDM7A^ENSG00000006459.11	chr7:140176744:-	SND1^ENSG00000197157.11	chr7:127721287:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2232:30197:10430	.	YES_LDAS	0.0146	GT	1.9086	AG	1.8323	"[""DEEPEST2019"",""INTRACHROMOSOMAL[chr7:11.99Mb]""]"	chr7:140176744-chr7:127721287	False		0	Read count too low: 1 < 5	FAIL	1
KDM6B--NPHP4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KDM6B^ENSG00000132510.11	chr17:7849482:+	NPHP4^ENSG00000131697.18	chr1:5866121:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1444:47760:28660	.	NO_LDAS	0.0146	GT	1.053	AG	1.6402	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:7849482-chr1:5866121	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KDM5C--AP001107.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KDM5C^ENSG00000126012.12	chrX:53192871:-	AP001107.2^ENSG00000254452.1	chr11:66276866:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2296:25861:23238	.	NO_LDAS	0.0146	GT	1.053	AG	1.6049	"[""INTERCHROMOSOMAL[chrX--chr11]""]"	chrX:53192871-chr11:66276866	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCTD21--CYCS	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KCTD21^ENSG00000188997.8	chr11:78176904:-	CYCS^ENSG00000172115.9	chr7:25121816:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1420:29307:25928	.	YES_LDAS	0.0146	GT	1.6402	AG	1.9656	"[""INTERCHROMOSOMAL[chr11--chr7]""]"	chr11:78176904-chr7:25121816	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCNK6--PLP2	1	0	1.0	0.0	ONLY_REF_SPLICE	KCNK6^ENSG00000099337.5	chr19:38320272:+	PLP2^ENSG00000102007.11	chrX:49174335:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1485:18280:9519	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9899	"[""INTERCHROMOSOMAL[chr19--chrX]""]"	chr19:38320272-chrX:49174335	False		0	Read count too low: 1 < 5	FAIL	1
KCNG3--NXF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KCNG3^ENSG00000171126.8	chr2:42443170:-	NXF1^ENSG00000162231.14	chr11:62794943:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1325:36944:10374	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr2--chr11]""]"	chr2:42443170-chr11:62794943	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCNAB2--AC018685.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KCNAB2^ENSG00000069424.15	chr1:6087515:+	AC018685.2^ENSG00000234929.2	chr2:2639486:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2229:15967:9884	.	NO_LDAS	0.0146	GT	1.6402	AG	1.7232	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:6087515-chr2:2639486	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
JAG1--YPEL3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	JAG1^ENSG00000101384.12	chr20:10651592:-	YPEL3^ENSG00000090238.12	chr16:30096008:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2310:12544:21836	.	YES_LDAS	0.0146	AT	1.6402	AC	1.4716	"[""INTERCHROMOSOMAL[chr20--chr16]""]"	chr20:10651592-chr16:30096008	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IYD--TAF12	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IYD^ENSG00000009765.15	chr6:150369076:+	TAF12^ENSG00000120656.12	chr1:28605460:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2173:12698:3326	.	NO_LDAS	0.0146	GT	1.7232	AG	1.8256	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:150369076-chr1:28605460	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ITSN2--CCDC91	1	0	1.0	0.0	ONLY_REF_SPLICE	ITSN2^ENSG00000198399.15	chr2:24313460:-	CCDC91^ENSG00000123106.10	chr12:28391304:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1141:26103:15166	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9656	"[""INTERCHROMOSOMAL[chr2--chr12]""]"	chr2:24313460-chr12:28391304	False		0	Read count too low: 1 < 5	FAIL	1
IRF5P1--ARPC2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IRF5P1^ENSG00000251347.2	chr8:92974029:+	ARPC2^ENSG00000163466.16	chr2:218249821:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1376:13014:5246	.	NO_LDAS	0.0146	GT	1.9329	AG	1.8256	"[""INTERCHROMOSOMAL[chr8--chr2]""]"	chr8:92974029-chr2:218249821	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IRAK1--AC093702.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IRAK1^ENSG00000184216.14	chrX:154018971:-	AC093702.1^ENSG00000231156.1	chr2:45013385:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1204:44193:11832	.	NO_LDAS	0.0146	GT	1.9899	AG	1.8062	"[""INTERCHROMOSOMAL[chrX--chr2]""]"	chrX:154018971-chr2:45013385	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IQGAP1--CDH19	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IQGAP1^ENSG00000140575.13	chr15:90452816:+	CDH19^ENSG00000071991.9	chr18:66604070:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2333:8710:27161	.	NO_LDAS	0.0146	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr15--chr18]""]"	chr15:90452816-chr18:66604070	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IPO4--COL1A1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IPO4^ENSG00000196497.17	chr14:24188445:-	COL1A1^ENSG00000108821.14	chr17:50195072:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1187:8249:20925	.	NO_LDAS	0.0146	GT	1.5546	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr17]""]"	chr14:24188445-chr17:50195072	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
INVS--HABP4	1	0	1.0	0.0	ONLY_REF_SPLICE	INVS^ENSG00000119509.13	chr9:100264928:+	HABP4^ENSG00000130956.14	chr9:96484462:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2127:17067:2457	.	YES_LDAS	0.0146	GT	1.4716	AG	1.9086	"[""INTRACHROMOSOMAL[chr9:3.61Mb]""]"	chr9:100264928-chr9:96484462	False		0	Read count too low: 1 < 5	FAIL	1
INPP5D--SRSF5	1	0	0.5	0.0	INCL_NON_REF_SPLICE	INPP5D^ENSG00000168918.14	chr2:233125886:+	SRSF5^ENSG00000100650.16	chr14:69766919:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:43748:26558	.	NO_LDAS	0.0073	GT	1.8892	AG	1.5301	"[""INTERCHROMOSOMAL[chr2--chr14]""]"	chr2:233125886-chr14:69766919	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
INPP5D--ADRA2A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	INPP5D^ENSG00000168918.14	chr2:233125886:+	ADRA2A^ENSG00000150594.7	chr10:111078588:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:43748:26558	.	NO_LDAS	0.0073	GT	1.8892	AG	1.2729	"[""INTERCHROMOSOMAL[chr2--chr10]""]"	chr2:233125886-chr10:111078588	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IL17D--WBP2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IL17D^ENSG00000172458.4	chr13:20721765:+	WBP2^ENSG00000132471.12	chr17:75846787:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2386:48060:7600	.	NO_LDAS	0.0146	GT	1.8295	AG	1.4566	"[""INTERCHROMOSOMAL[chr13--chr17]""]"	chr13:20721765-chr17:75846787	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IKZF3--CNTNAP4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IKZF3^ENSG00000161405.17	chr17:39832098:-	CNTNAP4^ENSG00000152910.19	chr16:76559368:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:24299:23840	.	NO_LDAS	0.0146	GT	1.9086	AG	1.8062	"[""INTERCHROMOSOMAL[chr17--chr16]""]"	chr17:39832098-chr16:76559368	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HUWE1--EPS15L1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HUWE1^ENSG00000086758.16	chrX:53603492:-	EPS15L1^ENSG00000127527.14	chr19:16471991:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1338:32082:16862	.	NO_LDAS	0.0146	GT	1.9329	AG	1.1033	"[""INTERCHROMOSOMAL[chrX--chr19]""]"	chrX:53603492-chr19:16471991	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HTRA2--TNRC6C	1	0	0.12	0.0	INCL_NON_REF_SPLICE	HTRA2^ENSG00000115317.12	chr2:74530362:+	TNRC6C^ENSG00000078687.17	chr17:78049790:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1483:30391:22397	.	NO_LDAS	0.0018	GT	1.6402	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:74530362-chr17:78049790	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HSD17B4--FYTTD1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HSD17B4^ENSG00000133835.17	chr5:119472576:+	FYTTD1^ENSG00000122068.13	chr3:197770154:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:22244:27651	.	YES_LDAS	0.0146	GT	1.9329	AG	1.5058	"[""INTERCHROMOSOMAL[chr5--chr3]""]"	chr5:119472576-chr3:197770154	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HOXA6--HOXA10	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HOXA6^ENSG00000106006.6	chr7:27145842:-	HOXA10^ENSG00000253293.5	chr7:27172069:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2192:51474:1462	.	NO_LDAS	0.0146	GT	1.5329	AG	1.7232	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr7:0.02Mb]"",""LOCAL_REARRANGEMENT:-:[19989]""]"	chr7:27145842-chr7:27172069	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
HNRNPR--KDM5A	1	0	1.0	0.0	ONLY_REF_SPLICE	HNRNPR^ENSG00000125944.21	chr1:23333518:-	KDM5A^ENSG00000073614.13	chr12:352324:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1355:13750:15657	.	NO_LDAS	0.0146	GT	1.6895	AG	1.9219	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:23333518-chr12:352324	False		0	Read count too low: 1 < 5	FAIL	1
HNRNPL--RASSF4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HNRNPL^ENSG00000104824.18	chr19:38840135:-	RASSF4^ENSG00000107551.21	chr10:44984680:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1130:39694:6843	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr19--chr10]""]"	chr19:38840135-chr10:44984680	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HNRNPA3--PLCD4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HNRNPA3^ENSG00000170144.21	chr2:177222657:+	PLCD4^ENSG00000115556.14	chr2:218629022:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1462:23094:6143	.	NO_LDAS	0.0146	GT	1.053	AG	1.9656	"[""INTRACHROMOSOMAL[chr2:41.38Mb]""]"	chr2:177222657-chr2:218629022	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HMX1--RUFY1	1	0	0.25	0.0	INCL_NON_REF_SPLICE	HMX1^ENSG00000215612.8	chr4:8867970:-	RUFY1^ENSG00000176783.15	chr5:179598805:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1326:20853:11173	.	NO_LDAS	0.0037	GT	1.5219	AG	1.6895	"[""INTERCHROMOSOMAL[chr4--chr5]""]"	chr4:8867970-chr5:179598805	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HM13--TRIO	1	0	0.5	0.0	INCL_NON_REF_SPLICE	HM13^ENSG00000101294.18	chr20:31568193:+	TRIO^ENSG00000038382.20	chr5:14143371:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2369:8321:26516	.	NO_LDAS	0.0073	GC	1.8892	AG	1.2729	"[""INTERCHROMOSOMAL[chr20--chr5]""]"	chr20:31568193-chr5:14143371	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HM13--NUDT18	1	0	0.5	0.0	INCL_NON_REF_SPLICE	HM13^ENSG00000101294.18	chr20:31568193:+	NUDT18^ENSG00000275074.2	chr8:22109207:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2369:8321:26516	.	NO_LDAS	0.0073	GC	1.8892	AG	1.2729	"[""INTERCHROMOSOMAL[chr20--chr8]""]"	chr20:31568193-chr8:22109207	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HLA-J--HLA-W	1	0	1.0	0.0	ONLY_REF_SPLICE	HLA-J^ENSG00000204622.11	chr6:30007593:+	HLA-W^ENSG00000235290.1	chr6:29957439:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2259:15740:4195	.	YES_LDAS	0.0146	GT	1.5628	AG	1.5628	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr6:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[47401]""]"	chr6:30007593-chr6:29957439	True	"pair|MHC complexes|HLA-W	HLA-J"	0	Blacklisted	FAIL	1
HLA-E--FOXN3P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HLA-E^ENSG00000204592.9	chr6:30489995:+	FOXN3P1^ENSG00000176318.8	chrX:102547682:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1135:38958:6100	.	NO_LDAS	0.0146	GT	1.8062	AG	1.8062	"[""INTERCHROMOSOMAL[chr6--chrX]""]"	chr6:30489995-chrX:102547682	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HLA-DRA--HLA-DQA1	1	0	1.0	0.0	ONLY_REF_SPLICE	HLA-DRA^ENSG00000204287.14	chr6:32443466:+	HLA-DQA1^ENSG00000196735.13	chr6:32642610:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1111:36701:17352	.	YES_LDAS	0.0146	GT	1.9899	AG	1.9899	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr6:0.18Mb]""]"	chr6:32443466-chr6:32642610	True	"pair|MHC complexes|HLA-DRA	HLA-DQA1; pair|recurrent breakpoints"	0	Blacklisted	FAIL	1
HLA-C--HLA-S	1	0	1.0	0.0	ONLY_REF_SPLICE	HLA-C^ENSG00000204525.17	chr6:31269338:-	HLA-S^ENSG00000225851.1	chr6:31382078:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1487:7715:14872	.	NO_LDAS	0.0146	GT	1.9086	AG	1.9086	"[""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr6:0.11Mb]""]"	chr6:31269338-chr6:31382078	True	"pair|recurrent breakpoints; pair|MHC complexes|HLA-S	HLA-C"	0	Blacklisted	FAIL	1
HLA-C--AC009884.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HLA-C^ENSG00000204525.17	chr6:31269493:-	AC009884.2^ENSG00000270255.1	chr8:19001925:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2275:51344:29627	.	NO_LDAS	0.0146	GT	1.8256	AG	1.7465	"[""INTERCHROMOSOMAL[chr6--chr8]""]"	chr6:31269493-chr8:19001925	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
HIF1A--ADAMTSL4-AS2	1	0	1.0	0.0	ONLY_REF_SPLICE	HIF1A^ENSG00000100644.17	chr14:61695839:+	ADAMTSL4-AS2^ENSG00000237781.3	chr1:150557724:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1440:23636:9744	.	YES_LDAS	0.0146	GT	1.2419	AG	1.9219	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:61695839-chr1:150557724	False		0	Read count too low: 1 < 5	FAIL	1
HERC5--UBAP2L	1	0	0.5	0.0	INCL_NON_REF_SPLICE	HERC5^ENSG00000138646.9	chr4:88500985:+	UBAP2L^ENSG00000143569.19	chr1:154270260:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:27390:27231	.	NO_LDAS	0.0073	GT	1.5329	AG	1.8892	"[""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:88500985-chr1:154270260	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HAX1--SSTR2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HAX1^ENSG00000143575.15	chr1:154275264:+	SSTR2^ENSG00000180616.9	chr17:73174361:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2170:41903:2037	.	NO_LDAS	0.0146	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:154275264-chr17:73174361	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HARS1--SERPINF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HARS1^ENSG00000170445.16	chr5:140691509:-	SERPINF1^ENSG00000132386.11	chr17:1775058:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2405:37866:13569	.	NO_LDAS	0.0146	GT	1.8892	AG	1.8323	"[""INTERCHROMOSOMAL[chr5--chr17]""]"	chr5:140691509-chr17:1775058	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GTF2E2--KCTD1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GTF2E2^ENSG00000197265.9	chr8:30658137:-	KCTD1^ENSG00000134504.14	chr18:26549042:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:10813:3985	.	NO_LDAS	0.0146	GT	1.2419	AG	1.053	"[""INTERCHROMOSOMAL[chr8--chr18]""]"	chr8:30658137-chr18:26549042	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GSPT1--SNX29	1	0	1.0	0.0	ONLY_REF_SPLICE	GSPT1^ENSG00000103342.13	chr16:11915369:-	SNX29^ENSG00000048471.14	chr16:12126633:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1116:42761:20982	.	YES_LDAS	0.0146	GT	1.4716	AG	1.8892	"[""INTRACHROMOSOMAL[chr16:0.06Mb]"",""LOCAL_INVERSION:-:+:[60652]""]"	chr16:11915369-chr16:12126633	False		0	Read count too low: 1 < 5	FAIL	1
GSDMB--HEG1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GSDMB^ENSG00000073605.18	chr17:39919305:-	HEG1^ENSG00000173706.14	chr3:125019356:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1465:27592:28366	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9899	"[""INTERCHROMOSOMAL[chr17--chr3]""]"	chr17:39919305-chr3:125019356	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GRK2--PCAT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GRK2^ENSG00000173020.11	chr11:67279519:+	PCAT1^ENSG00000253438.4	chr8:126713798:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2206:31928:21528	.	NO_LDAS	0.0146	GT	1.8062	AG	1.9329	"[""INTERCHROMOSOMAL[chr11--chr8]""]"	chr11:67279519-chr8:126713798	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GRK2--AKT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GRK2^ENSG00000173020.11	chr11:67285385:+	AKT1^ENSG00000142208.17	chr14:104774467:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:7852:22845	.	NO_LDAS	0.0146	GC	1.8062	AG	1.8892	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr11--chr14]""]"	chr11:67285385-chr14:104774467	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
GRAMD1B--RBM6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GRAMD1B^ENSG00000023171.18	chr11:123358478:+	RBM6^ENSG00000004534.15	chr3:50066312:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1378:35601:21472	.	NO_LDAS	0.0146	GT	1.3383	AG	1.2729	"[""INTERCHROMOSOMAL[chr11--chr3]""]"	chr11:123358478-chr3:50066312	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GPSM3--TLL2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GPSM3^ENSG00000213654.10	chr6:32192148:-	TLL2^ENSG00000095587.9	chr10:96432931:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1437:13620:10612	.	NO_LDAS	0.0146	GT	1.5301	AG	1.8892	"[""INTERCHROMOSOMAL[chr6--chr10]""]"	chr6:32192148-chr10:96432931	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GOLGA3--DNAJC27-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GOLGA3^ENSG00000090615.15	chr12:132774157:-	DNAJC27-AS1^ENSG00000224165.6	chr2:25036816:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1268:50689:22383	.	NO_LDAS	0.0146	GT	1.7968	AG	1.5656	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:132774157-chr2:25036816	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GMIP--TTC12	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GMIP^ENSG00000089639.11	chr19:19638427:-	TTC12^ENSG00000149292.17	chr11:113323350:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2366:32535:27175	.	NO_LDAS	0.0146	GT	1.8323	AG	1.5546	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:19638427-chr11:113323350	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GLG1--CUL5	1	0	1.0	0.0	ONLY_REF_SPLICE	GLG1^ENSG00000090863.12	chr16:74606657:-	CUL5^ENSG00000166266.14	chr11:108033802:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1129:51724:15265	.	YES_LDAS	0.0146	GT	1.6402	AG	1.8323	"[""INTERCHROMOSOMAL[chr16--chr11]""]"	chr16:74606657-chr11:108033802	False		0	Read count too low: 1 < 5	FAIL	1
GJB7--SH3GL1P2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GJB7^ENSG00000164411.12	chr6:87329138:-	SH3GL1P2^ENSG00000264943.1	chr17:30624418:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1423:34242:6423	.	NO_LDAS	0.0146	GT	1.8062	AG	1.8323	"[""INTERCHROMOSOMAL[chr6--chr17]""]"	chr6:87329138-chr17:30624418	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GET4--DVL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GET4^ENSG00000239857.7	chr7:893815:+	DVL1^ENSG00000107404.20	chr1:1338570:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2202:26637:13373	.	NO_LDAS	0.0146	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:893815-chr1:1338570	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GDF11--RAPGEF6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GDF11^ENSG00000135414.10	chr12:55752395:+	RAPGEF6^ENSG00000158987.22	chr5:131429121:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:6873:6745	.	NO_LDAS	0.0146	GT	0.6998	AG	1.5219	"[""INTERCHROMOSOMAL[chr12--chr5]""]"	chr12:55752395-chr5:131429121	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GDF11--PIEZO1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GDF11^ENSG00000135414.10	chr12:55750097:+	PIEZO1^ENSG00000103335.22	chr16:88736785:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1259:48205:27469	.	NO_LDAS	0.0146	GT	1.6729	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr16]""]"	chr12:55750097-chr16:88736785	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GALNT7--KLHL2	1	0	1.0	0.0	ONLY_REF_SPLICE	GALNT7^ENSG00000109586.12	chr4:173168961:+	KLHL2^ENSG00000109466.14	chr4:165219934:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1389:47129:5568	.	NO_LDAS	0.0146	GT	1.7968	AG	1.7819	"[""INTRACHROMOSOMAL[chr4:7.85Mb]""]"	chr4:173168961-chr4:165219934	False		0	Read count too low: 1 < 5	FAIL	1
GALNT2--CD46	1	0	1.0	0.0	ONLY_REF_SPLICE	GALNT2^ENSG00000143641.10	chr1:230067406:+	CD46^ENSG00000117335.20	chr1:207757014:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2194:17010:28898	.	NO_LDAS	0.0146	GT	1.4566	AG	1.9219	"[""INTRACHROMOSOMAL[chr1:22.26Mb]""]"	chr1:230067406-chr1:207757014	False		0	Read count too low: 1 < 5	FAIL	1
GAK--MAP2K2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GAK^ENSG00000178950.17	chr4:866406:-	MAP2K2^ENSG00000126934.14	chr19:4104754:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1113:40107:10416	.	NO_LDAS	0.0146	GT	1.7232	AG	1.2419	"[""INTERCHROMOSOMAL[chr4--chr19]""]"	chr4:866406-chr19:4104754	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GABBR1--TCEAL3	1	0	0.33	0.0	INCL_NON_REF_SPLICE	GABBR1^ENSG00000204681.11	chr6:29556097:-	TCEAL3^ENSG00000196507.11	chrX:103609224:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2229:44395:4951	.	NO_LDAS	0.0048	GT	1.6402	AG	1.7968	"[""INTERCHROMOSOMAL[chr6--chrX]""]"	chr6:29556097-chrX:103609224	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GAB3--JAKMIP2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GAB3^ENSG00000160219.12	chrX:154712229:-	JAKMIP2^ENSG00000176049.16	chr5:147587887:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1308:17431:26376	.	NO_LDAS	0.0146	GT	1.8323	AG	1.9656	"[""INTERCHROMOSOMAL[chrX--chr5]""]"	chrX:154712229-chr5:147587887	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FXYD5--GRIN2B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FXYD5^ENSG00000089327.15	chr19:35160801:+	GRIN2B^ENSG00000273079.7	chr12:13544262:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2113:48658:5274	.	NO_LDAS	0.0146	GT	1.5301	AG	1.9656	"[""INTERCHROMOSOMAL[chr19--chr12]""]"	chr19:35160801-chr12:13544262	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FOXN4--SCRIB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FOXN4^ENSG00000139445.18	chr12:109287848:-	SCRIB^ENSG00000180900.20	chr8:143792771:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2412:50155:17759	.	NO_LDAS	0.0146	GC	1.4716	AG	1.6402	"[""INTERCHROMOSOMAL[chr12--chr8]""]"	chr12:109287848-chr8:143792771	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FNIP1--RAPGEF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FNIP1^ENSG00000217128.12	chr5:131642746:-	RAPGEF1^ENSG00000107263.18	chr9:131626422:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2317:43885:7207	.	YES_LDAS	0.0146	GT	1.9329	AG	1.8892	"[""INTERCHROMOSOMAL[chr5--chr9]""]"	chr5:131642746-chr9:131626422	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FLYWCH1--JPT2	1	0	1.0	0.0	ONLY_REF_SPLICE	FLYWCH1^ENSG00000059122.17	chr16:2940092:+	JPT2^ENSG00000206053.13	chr16:1685439:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2254:38885:24471	.	YES_LDAS	0.0146	GT	1.9899	AG	1.7465	"[""INTRACHROMOSOMAL[chr16:1.21Mb]""]"	chr16:2940092-chr16:1685439	False		0	Read count too low: 1 < 5	FAIL	1
FLNA--NDUFS2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FLNA^ENSG00000196924.19	chrX:154366024:-	NDUFS2^ENSG00000158864.13	chr1:161202574:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1166:3217:24457	.	NO_LDAS	0.0146	GT	1.9899	AG	1.8892	"[""INTERCHROMOSOMAL[chrX--chr1]""]"	chrX:154366024-chr1:161202574	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FLII--AC027130.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FLII^ENSG00000177731.16	chr17:18253611:-	AC027130.1^ENSG00000261195.1	chr16:19761447:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1151:19267:28856	.	NO_LDAS	0.0146	GT	1.8892	AG	1.6729	"[""INTERCHROMOSOMAL[chr17--chr16]""]"	chr17:18253611-chr16:19761447	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FLI1--L3MBTL3	1	0	1.0	0.0	ONLY_REF_SPLICE	FLI1^ENSG00000151702.17	chr11:128758326:+	L3MBTL3^ENSG00000198945.8	chr6:130022227:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1154:36604:23910	.	YES_LDAS	0.0146	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr11--chr6]""]"	chr11:128758326-chr6:130022227	False		0	Read count too low: 1 < 5	FAIL	1
FGFR3--DDX5	1	0	1.0	0.0	ONLY_REF_SPLICE	FGFR3^ENSG00000068078.20	chr4:1794043:+	DDX5^ENSG00000108654.16	chr17:64504842:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:15602:25451	.	YES_LDAS	0.0146	GT	1.5546	AG	1.8256	"[""INTERCHROMOSOMAL[chr4--chr17]""]"	chr4:1794043-chr17:64504842	False		0	Read count too low: 1 < 5	FAIL	1
FCGBP--PDHX	1	0	0.5	0.0	ONLY_REF_SPLICE	FCGBP^ENSG00000275395.6	chr19:39905731:-	PDHX^ENSG00000110435.12	chr11:35020208:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2233:38562:18641	.	YES_LDAS	0.0073	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:39905731-chr11:35020208	False		0	Read count too low: 1 < 5	FAIL	1
FCGBP--PDHX	1	0	0.5	0.0	ONLY_REF_SPLICE	FCGBP^ENSG00000275395.6	chr19:39889479:-	PDHX^ENSG00000110435.12	chr11:35020208:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2233:38562:18641	.	YES_LDAS	0.0073	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:39889479-chr11:35020208	False		0	Read count too low: 1 < 5	FAIL	1
FBXO34--USP48	1	0	1.0	0.0	ONLY_REF_SPLICE	FBXO34^ENSG00000178974.11	chr14:55278829:+	USP48^ENSG00000090686.16	chr1:21715457:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:49920:26572	.	YES_LDAS	0.0146	GT	1.9329	AG	1.6402	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:55278829-chr1:21715457	False		0	Read count too low: 1 < 5	FAIL	1
FARSA--EIF3C	1	0	0.5	0.0	ONLY_REF_SPLICE	FARSA^ENSG00000179115.11	chr19:12924151:-	EIF3C^ENSG00000184110.15	chr16:28723164:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2168:27584:10865	.	YES_LDAS	0.0073	GT	1.7465	AG	1.5058	"[""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:12924151-chr16:28723164	False		0	Read count too low: 1 < 5	FAIL	1
FAM98A--SYNRG	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAM98A^ENSG00000119812.19	chr2:33585246:-	SYNRG^ENSG00000275066.5	chr17:37539245:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1385:29501:12868	.	NO_LDAS	0.0146	GT	1.5546	AG	1.4566	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:33585246-chr17:37539245	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM71D--PKMYT1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	FAM71D^ENSG00000172717.16	chr14:67200170:+	PKMYT1^ENSG00000127564.17	chr16:2971712:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2193:31936:3718	.	NO_LDAS	0.0073	AT	1.7968	AC	1.3753	"[""INTERCHROMOSOMAL[chr14--chr16]""]"	chr14:67200170-chr16:2971712	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM171B--ATRX	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAM171B^ENSG00000144369.13	chr2:186761692:+	ATRX^ENSG00000085224.23	chrX:77676298:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2164:36378:1715	.	NO_LDAS	0.0146	GT	1.1589	AG	1.9329	"[""INTERCHROMOSOMAL[chr2--chrX]""]"	chr2:186761692-chrX:77676298	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM169A--ZNF318	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAM169A^ENSG00000198780.12	chr5:74866327:-	ZNF318^ENSG00000171467.16	chr6:43369412:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:44290:14746	.	NO_LDAS	0.0146	GT	1.4566	AG	1.5628	"[""INTERCHROMOSOMAL[chr5--chr6]""]"	chr5:74866327-chr6:43369412	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM168A--GPR22	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAM168A^ENSG00000054965.11	chr11:73411495:-	GPR22^ENSG00000172209.6	chr7:107474387:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2187:29922:25676	.	NO_LDAS	0.0146	GT	1.6402	AG	1.8256	"[""INTERCHROMOSOMAL[chr11--chr7]""]"	chr11:73411495-chr7:107474387	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM160A1--BTRC	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM160A1^ENSG00000164142.16	chr4:151454808:+	BTRC^ENSG00000166167.18	chr10:101461981:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1105:30156:27035	.	YES_LDAS	0.0146	GT	1.7819	AG	1.9219	"[""INTERCHROMOSOMAL[chr4--chr10]""]"	chr4:151454808-chr10:101461981	False		0	Read count too low: 1 < 5	FAIL	1
FAM135A--MTMR14	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAM135A^ENSG00000082269.17	chr6:70525470:+	MTMR14^ENSG00000163719.20	chr3:9668719:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1172:41782:17268	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9899	"[""INTERCHROMOSOMAL[chr6--chr3]""]"	chr6:70525470-chr3:9668719	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EXPH5--SEC61A1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EXPH5^ENSG00000110723.12	chr11:108506866:-	SEC61A1^ENSG00000058262.10	chr3:128066954:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2413:17269:15054	.	YES_LDAS	0.0146	GT	1.9329	AG	1.8892	"[""INTERCHROMOSOMAL[chr11--chr3]""]"	chr11:108506866-chr3:128066954	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EVL--PYCR2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EVL^ENSG00000196405.13	chr14:99972013:+	PYCR2^ENSG00000143811.19	chr1:225920410:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2385:28660:18557	.	NO_LDAS	0.0146	GT	0.971	AG	1.2419	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:99972013-chr1:225920410	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ERMAP--USP44	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ERMAP^ENSG00000164010.15	chr1:42824492:+	USP44^ENSG00000136014.12	chr12:95524746:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2361:9891:23069	.	NO_LDAS	0.0146	GT	1.8323	AG	1.3996	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:42824492-chr12:95524746	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ERGIC3--GRAMD1C	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ERGIC3^ENSG00000125991.20	chr20:35542941:+	GRAMD1C^ENSG00000178075.20	chr3:113946593:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1492:39670:26306	.	NO_LDAS	0.0146	GT	1.8295	AG	1.5656	"[""INTERCHROMOSOMAL[chr20--chr3]""]"	chr20:35542941-chr3:113946593	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ERCC1--AC103718.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ERCC1^ENSG00000012061.16	chr19:45449173:-	AC103718.1^ENSG00000285108.1	chr8:129686659:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2252:35876:8721	.	YES_LDAS	0.0146	GT	1.9656	AG	1.7968	"[""INTERCHROMOSOMAL[chr19--chr8]""]"	chr19:45449173-chr8:129686659	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ERBB2--PITX2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ERBB2^ENSG00000141736.14	chr17:39726659:+	PITX2^ENSG00000164093.17	chr4:110621343:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2317:28425:28464	.	NO_LDAS	0.0146	GT	1.8892	AG	1.7968	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:39726659-chr4:110621343	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EPS8L3--SPTAN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EPS8L3^ENSG00000198758.11	chr1:109757821:-	SPTAN1^ENSG00000197694.18	chr9:128615749:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2404:26119:28114	.	NO_LDAS	0.0146	GC	1.8892	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr9]""]"	chr1:109757821-chr9:128615749	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EPN3--EPN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EPN3^ENSG00000049283.18	chr17:50536922:+	EPN1^ENSG00000063245.15	chr19:55685489:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2153:38853:9898	.	NO_LDAS	0.0146	GT	1.8256	AG	1.9899	"[""INTERCHROMOSOMAL[chr17--chr19]""]"	chr17:50536922-chr19:55685489	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EPHA1--HSPG2	1	0	1.0	0.0	ONLY_REF_SPLICE	EPHA1^ENSG00000146904.9	chr7:143393671:-	HSPG2^ENSG00000142798.20	chr1:21850498:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1207:10473:25255	.	YES_LDAS	0.0146	GT	1.8892	AG	1.7232	"[""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:143393671-chr1:21850498	False		0	Read count too low: 1 < 5	FAIL	1
EPB41L1--LRP10	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EPB41L1^ENSG00000088367.23	chr20:36232732:+	LRP10^ENSG00000197324.9	chr14:22872318:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1321:19453:21724	.	NO_LDAS	0.0146	AT	1.8256	AC	0.9183	"[""INTERCHROMOSOMAL[chr20--chr14]""]"	chr20:36232732-chr14:22872318	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ENTPD3--UGGT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ENTPD3^ENSG00000168032.10	chr3:40416073:+	UGGT1^ENSG00000136731.13	chr2:128121279:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1364:24688:16806	.	NO_LDAS	0.0146	GT	1.9656	AG	1.5656	"[""INTERCHROMOSOMAL[chr3--chr2]""]"	chr3:40416073-chr2:128121279	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EMX2--ROR1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EMX2^ENSG00000170370.12	chr10:117543445:+	ROR1^ENSG00000185483.12	chr1:63774055:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2489:31912:19734	.	NO_LDAS	0.0146	GT	0.9183	AG	1.1589	"[""INTERCHROMOSOMAL[chr10--chr1]""]"	chr10:117543445-chr1:63774055	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EML4--USP16	1	0	1.0	0.0	ONLY_REF_SPLICE	EML4^ENSG00000143924.19	chr2:42169636:+	USP16^ENSG00000156256.15	chr21:29027873:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2219:51563:24709	.	YES_LDAS	0.0146	GT	1.7819	AG	1.2419	"[""INTERCHROMOSOMAL[chr2--chr21]""]"	chr2:42169636-chr21:29027873	False		0	Read count too low: 1 < 5	FAIL	1
ELP4--ZNRD1ASP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ELP4^ENSG00000109911.19	chr11:31784416:+	ZNRD1ASP^ENSG00000204623.9	chr6:30007593:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1385:43594:25928	.	NO_LDAS	0.0146	AT	1.5628	AC	1.5628	"[""INTERCHROMOSOMAL[chr11--chr6]""]"	chr11:31784416-chr6:30007593	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ELF1--KLC1	1	0	1.0	0.0	ONLY_REF_SPLICE	ELF1^ENSG00000120690.16	chr13:41019228:-	KLC1^ENSG00000126214.21	chr14:103700655:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2396:37397:22060	.	YES_LDAS	0.0146	GT	1.6729	AG	1.7819	"[""INTERCHROMOSOMAL[chr13--chr14]""]"	chr13:41019228-chr14:103700655	False		0	Read count too low: 1 < 5	FAIL	1
ELDR--HNRNPUL2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ELDR^ENSG00000280890.1	chr7:55238273:-	HNRNPUL2^ENSG00000214753.4	chr11:62726832:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2217:22981:22201	.	NO_LDAS	0.0146	GT	1.7819	AG	1.231	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:55238273-chr11:62726832	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EIF5A--MED24	1	0	0.5	0.0	INCL_NON_REF_SPLICE	EIF5A^ENSG00000132507.18	chr17:7311651:+	MED24^ENSG00000008838.20	chr17:40026828:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1135:28894:16918	.	NO_LDAS	0.0073	GT	1.9656	AG	1.1033	"[""INTRACHROMOSOMAL[chr17:32.71Mb]""]"	chr17:7311651-chr17:40026828	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EIF4A1--EIF4A2	1	0	0.5	0.0	ONLY_REF_SPLICE	EIF4A1^ENSG00000161960.16	chr17:7577916:+	EIF4A2^ENSG00000156976.17	chr3:186784962:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1307:2432:13513	.	NO_LDAS	0.0073	GT	1.9219	AG	1.5219	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr17--chr3]""]"	chr17:7577916-chr3:186784962	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
EIF2AK2--DICER1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EIF2AK2^ENSG00000055332.19	chr2:37156908:-	DICER1^ENSG00000100697.15	chr14:95157406:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2465:9786:20449	.	YES_LDAS	0.0146	GT	1.231	AG	1.8323	"[""INTERCHROMOSOMAL[chr2--chr14]""]"	chr2:37156908-chr14:95157406	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EEF1DP7--EEF1D	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EEF1DP7^ENSG00000263883.1	chr17:63636699:+	EEF1D^ENSG00000104529.17	chr8:143580681:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1187:20189:1813	.	NO_LDAS	0.0146	GC	1.5058	AG	1.5656	"[""INTERCHROMOSOMAL[chr17--chr8]""]"	chr17:63636699-chr8:143580681	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EEF1A1--RPLP0	1	0	0.14	0.0	ONLY_REF_SPLICE	EEF1A1^ENSG00000156508.19	chr6:73518698:-	RPLP0^ENSG00000089157.16	chr12:120197462:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2240:18580:14634	.	YES_LDAS	0.002	GT	1.9086	AG	1.9086	"[""TCGA_StarF2019"",""CCLE_StarF2019"",""INTERCHROMOSOMAL[chr6--chr12]""]"	chr6:73518698-chr12:120197462	False		0	Read count too low: 1 < 5	FAIL	1
EDEM1--EXOG	1	0	1.0	0.0	ONLY_REF_SPLICE	EDEM1^ENSG00000134109.11	chr3:5188314:+	EXOG^ENSG00000157036.13	chr3:38523901:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1152:49297:10444	.	YES_LDAS	0.0146	GT	1.4295	AG	1.8295	"[""INTRACHROMOSOMAL[chr3:33.28Mb]""]"	chr3:5188314-chr3:38523901	False		0	Read count too low: 1 < 5	FAIL	1
E2F4--ARID3BP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	E2F4^ENSG00000205250.9	chr16:67195950:+	ARID3BP1^ENSG00000227288.3	chr1:81501788:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2302:13645:11663	.	YES_LDAS	0.0146	GT	1.9656	AG	1.585	"[""INTERCHROMOSOMAL[chr16--chr1]""]"	chr16:67195950-chr1:81501788	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DYRK1A--TTC3	1	0	0.5	0.0	ONLY_REF_SPLICE	DYRK1A^ENSG00000157540.22	chr21:37367628:+	TTC3^ENSG00000182670.13	chr21:37108392:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2183:33902:28562	.	YES_LDAS	0.0073	GT	1.5546	AG	1.9656	"[""GUO2018CR_TCGA"",""DEEPEST2019"",""TumorFusionsNAR2018"",""ChimerSeq"",""INTRACHROMOSOMAL[chr21:0.16Mb]""]"	chr21:37367628-chr21:37108392	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
DVL2--RCOR1	1	0	1.0	0.0	ONLY_REF_SPLICE	DVL2^ENSG00000004975.12	chr17:7234069:-	RCOR1^ENSG00000089902.10	chr14:102726468:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1288:5458:14550	.	YES_LDAS	0.0146	GT	1.8892	AG	1.8062	"[""INTERCHROMOSOMAL[chr17--chr14]""]"	chr17:7234069-chr14:102726468	False		0	Read count too low: 1 < 5	FAIL	1
DVL2--H4C14	1	0	0.5	0.0	INCL_NON_REF_SPLICE	DVL2^ENSG00000004975.12	chr17:7226421:-	H4C14^ENSG00000270882.2	chr1:149833115:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1120:9236:10220	.	NO_LDAS	0.0073	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:7226421-chr1:149833115	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DUX4--ZNF544	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DUX4^ENSG00000260596.5	chr4:190175870:+	ZNF544^ENSG00000198131.14	chr19:58261426:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2475:7383:11775	.	NO_LDAS	0.0146	GT	1.6402	AG	1.9656	"[""INTERCHROMOSOMAL[chr4--chr19]""]"	chr4:190175870-chr19:58261426	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DTX1--DTX2	1	0	1.0	0.0	ONLY_REF_SPLICE	DTX1^ENSG00000135144.7	chr12:113095203:+	DTX2^ENSG00000091073.19	chr7:76504356:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1265:13297:23083	.	YES_LDAS	0.0146	GT	1.7465	AG	1.6402	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:113095203-chr7:76504356	False		0	Read count too low: 1 < 5	FAIL	1
DRP2--FTH1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DRP2^ENSG00000102385.13	chrX:101261275:+	FTH1^ENSG00000167996.16	chr11:61965112:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2365:49281:29305	.	NO_LDAS	0.0146	GT	1.8323	AG	1.9219	"[""INTERCHROMOSOMAL[chrX--chr11]""]"	chrX:101261275-chr11:61965112	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DOCK8--DOCK6	1	0	1.0	0.0	ONLY_REF_SPLICE	DOCK8^ENSG00000107099.16	chr9:368135:+	DOCK6^ENSG00000130158.14	chr19:11245878:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2185:36523:22649	.	NO_LDAS	0.0146	GT	1.9329	AG	1.8256	"[""INTERCHROMOSOMAL[chr9--chr19]""]"	chr9:368135-chr19:11245878	False		0	Read count too low: 1 < 5	FAIL	1
DOCK6--ING1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DOCK6^ENSG00000130158.14	chr19:11227337:-	ING1^ENSG00000153487.13	chr13:110721307:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2136:48278:17338	.	YES_LDAS	0.0146	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr13]""]"	chr19:11227337-chr13:110721307	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DOCK2--AC009495.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DOCK2^ENSG00000134516.18	chr5:170056768:+	AC009495.3^ENSG00000235192.1	chr2:165801412:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1256:28644:18389	.	NO_LDAS	0.0146	GT	1.8256	AG	1.8295	"[""INTERCHROMOSOMAL[chr5--chr2]""]"	chr5:170056768-chr2:165801412	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DNASE1L1--PLK1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DNASE1L1^ENSG00000013563.14	chrX:154402723:-	PLK1^ENSG00000166851.15	chr16:23687477:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1224:51190:21458	.	NO_LDAS	0.0146	GT	1.6402	AG	1.8295	"[""INTERCHROMOSOMAL[chrX--chr16]""]"	chrX:154402723-chr16:23687477	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DNAJC10--UBAP2L	1	0	0.5	0.0	INCL_NON_REF_SPLICE	DNAJC10^ENSG00000077232.19	chr2:182794001:+	UBAP2L^ENSG00000143569.19	chr1:154270260:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:27390:27231	.	NO_LDAS	0.0073	GT	1.6895	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:182794001-chr1:154270260	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DMWD--AFAP1L2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DMWD^ENSG00000185800.12	chr19:45785818:-	AFAP1L2^ENSG00000169129.15	chr10:114313960:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2120:8702:28240	.	NO_LDAS	0.0146	GT	1.7232	AG	1.7819	"[""INTERCHROMOSOMAL[chr19--chr10]""]"	chr19:45785818-chr10:114313960	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DMD--CPXM2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DMD^ENSG00000198947.17	chrX:33020139:-	CPXM2^ENSG00000121898.13	chr10:123746838:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1384:48035:5764	.	NO_LDAS	0.0146	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chrX--chr10]""]"	chrX:33020139-chr10:123746838	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DIP2C--RXRB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DIP2C^ENSG00000151240.17	chr10:689660:-	RXRB^ENSG00000204231.11	chr6:33200337:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2150:34031:1659	.	NO_LDAS	0.0146	GT	1.5301	AG	0.9183	"[""INTERCHROMOSOMAL[chr10--chr6]""]"	chr10:689660-chr6:33200337	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DIP2C--CHD5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DIP2C^ENSG00000151240.17	chr10:689660:-	CHD5^ENSG00000116254.18	chr1:6154782:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1134:39929:23364	.	NO_LDAS	0.0146	GT	1.5301	AG	1.231	"[""INTERCHROMOSOMAL[chr10--chr1]""]"	chr10:689660-chr1:6154782	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DIDO1--TRBV29-1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	DIDO1^ENSG00000101191.17	chr20:62882134:-	TRBV29-1^ENSG00000232869.2	chr7:142740607:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1169:7618:20617	.	NO_LDAS	0.0073	GT	1.9086	AG	1.8323	"[""INTERCHROMOSOMAL[chr20--chr7]""]"	chr20:62882134-chr7:142740607	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DGKQ--IRF7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DGKQ^ENSG00000145214.14	chr4:970987:-	IRF7^ENSG00000185507.21	chr11:612800:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1497:25505:8216	.	NO_LDAS	0.0146	GT	1.7465	AG	1.9086	"[""INTERCHROMOSOMAL[chr4--chr11]""]"	chr4:970987-chr11:612800	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DENND4B--MLLT3	1	0	0.5	0.0	INCL_NON_REF_SPLICE	DENND4B^ENSG00000198837.10	chr1:153934797:-	MLLT3^ENSG00000171843.17	chr9:20414378:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2288:33465:4265	.	YES_LDAS	0.0073	GT	1.5656	AG	1.8256	"[""INTERCHROMOSOMAL[chr1--chr9]""]"	chr1:153934797-chr9:20414378	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DENND4B--JCAD	1	0	0.5	0.0	INCL_NON_REF_SPLICE	DENND4B^ENSG00000198837.10	chr1:153934797:-	JCAD^ENSG00000165757.9	chr10:30027598:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2288:33465:4265	.	YES_LDAS	0.0073	GT	1.5656	AG	1.8256	"[""INTERCHROMOSOMAL[chr1--chr10]""]"	chr1:153934797-chr10:30027598	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DENND4B--GLS	1	0	0.5	0.0	INCL_NON_REF_SPLICE	DENND4B^ENSG00000198837.10	chr1:153934797:-	GLS^ENSG00000115419.13	chr2:190880895:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2396:45293:12224	.	YES_LDAS	0.0073	GT	1.5656	AG	1.585	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:153934797-chr2:190880895	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DEK--KDM1B	1	0	1.0	0.0	ONLY_REF_SPLICE	DEK^ENSG00000124795.17	chr6:18236452:-	KDM1B^ENSG00000165097.16	chr6:18205537:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1297:12415:1715	.	YES_LDAS	0.0146	GT	1.8295	AG	1.053	"[""INTRACHROMOSOMAL[chr6:0.00Mb]"",""LOCAL_INVERSION:-:+:[6]""]"	chr6:18236452-chr6:18205537	False		0	Read count too low: 1 < 5	FAIL	1
DDX19B--FAU	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DDX19B^ENSG00000157349.17	chr16:70299146:+	FAU^ENSG00000149806.11	chr11:65120791:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1464:21767:28002	.	NO_LDAS	0.0146	GT	1.7819	AG	0.9183	"[""INTERCHROMOSOMAL[chr16--chr11]""]"	chr16:70299146-chr11:65120791	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DBI--CNPY4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DBI^ENSG00000155368.16	chr2:119370802:+	CNPY4^ENSG00000166997.8	chr7:100125259:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1463:18782:17675	.	NO_LDAS	0.0146	GT	1.7056	AG	1.9086	"[""INTERCHROMOSOMAL[chr2--chr7]""]"	chr2:119370802-chr7:100125259	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DACT3--USP54	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DACT3^ENSG00000197380.11	chr19:46647980:-	USP54^ENSG00000166348.19	chr10:73499033:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2432:15869:23364	.	NO_LDAS	0.0146	GT	1.9899	AG	1.9656	"[""INTERCHROMOSOMAL[chr19--chr10]""]"	chr19:46647980-chr10:73499033	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DAAM2--NEAT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DAAM2^ENSG00000146122.17	chr6:39901472:+	NEAT1^ENSG00000245532.9	chr11:65423480:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2443:52137:7460	.	YES_LDAS	0.0146	GT	1.9329	AG	1.4716	"[""INTERCHROMOSOMAL[chr6--chr11]""]"	chr6:39901472-chr11:65423480	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CYP4V2--TSC22D2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CYP4V2^ENSG00000145476.16	chr4:186203693:+	TSC22D2^ENSG00000196428.12	chr3:150410647:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:11080:16890	.	NO_LDAS	0.0146	GT	1.8256	AG	1.8062	"[""INTERCHROMOSOMAL[chr4--chr3]""]"	chr4:186203693-chr3:150410647	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CYP4B1--CYP4X1	1	0	1.0	0.0	ONLY_REF_SPLICE	CYP4B1^ENSG00000142973.14	chr1:46815264:+	CYP4X1^ENSG00000186377.8	chr1:47029990:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2257:2343:7502	.	YES_LDAS	0.0146	GT	1.9329	AG	1.7465	"[""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""ChimerSeq"",""INTRACHROMOSOMAL[chr1:0.20Mb]""]"	chr1:46815264-chr1:47029990	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
CXCR5--ZBTB34	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CXCR5^ENSG00000160683.5	chr11:118895650:+	ZBTB34^ENSG00000177125.5	chr9:126879850:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1260:38424:28576	.	NO_LDAS	0.0146	GT	1.8062	AG	1.8323	"[""INTERCHROMOSOMAL[chr11--chr9]""]"	chr11:118895650-chr9:126879850	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CUL7--TMEM167B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CUL7^ENSG00000044090.11	chr6:43037866:-	TMEM167B^ENSG00000215717.7	chr1:109092890:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1308:48666:22579	.	NO_LDAS	0.0146	GC	1.8062	AG	1.8892	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:43037866-chr1:109092890	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CUL2--PIP4K2A	1	0	1.0	0.0	ONLY_REF_SPLICE	CUL2^ENSG00000108094.16	chr10:35032435:-	PIP4K2A^ENSG00000150867.14	chr10:22591781:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2308:28514:11243	.	YES_LDAS	0.0146	GT	1.8892	AG	1.9656	"[""INTRACHROMOSOMAL[chr10:12.29Mb]""]"	chr10:35032435-chr10:22591781	False		0	Read count too low: 1 < 5	FAIL	1
CTSD--AC022387.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CTSD^ENSG00000117984.15	chr11:1763797:-	AC022387.1^ENSG00000270352.1	chr10:63658381:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2483:27252:2023	.	YES_LDAS	0.0146	GT	1.2419	AG	1.9329	"[""INTERCHROMOSOMAL[chr11--chr10]""]"	chr11:1763797-chr10:63658381	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CSPP1--TPD52	1	0	1.0	0.0	ONLY_REF_SPLICE	CSPP1^ENSG00000104218.16	chr8:67137603:+	TPD52^ENSG00000076554.15	chr8:80064593:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2160:10158:6661	.	NO_LDAS	0.0146	GT	1.6729	AG	1.9656	"[""INTRACHROMOSOMAL[chr8:12.84Mb]""]"	chr8:67137603-chr8:80064593	False		0	Read count too low: 1 < 5	FAIL	1
CRYL1--MYCBP2	1	0	1.0	0.0	ONLY_REF_SPLICE	CRYL1^ENSG00000165475.15	chr13:20489370:-	MYCBP2^ENSG00000005810.18	chr13:77296674:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1412:41094:19861	.	NO_LDAS	0.0146	GT	1.9656	AG	1.3996	"[""INTRACHROMOSOMAL[chr13:56.52Mb]""]"	chr13:20489370-chr13:77296674	False		0	Read count too low: 1 < 5	FAIL	1
CREBL2--EIF2B3	1	0	1.0	0.0	ONLY_REF_SPLICE	CREBL2^ENSG00000111269.3	chr12:12612187:+	EIF2B3^ENSG00000070785.17	chr1:44972574:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1484:15457:20127	.	NO_LDAS	0.0146	GT	1.7819	AG	1.8295	"[""INTERCHROMOSOMAL[chr12--chr1]""]"	chr12:12612187-chr1:44972574	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
CR2--NBAS	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CR2^ENSG00000117322.18	chr1:207471499:+	NBAS^ENSG00000151779.13	chr2:15238533:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1389:2861:21486	.	NO_LDAS	0.0146	GT	1.8295	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:207471499-chr2:15238533	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CPT1B--AL929472.4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CPT1B^ENSG00000205560.13	chr22:50571154:-	AL929472.4^ENSG00000235673.1	chr1:37841148:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:11404:20645	.	NO_LDAS	0.0146	GT	1.9086	AG	1.6895	"[""INTERCHROMOSOMAL[chr22--chr1]""]"	chr22:50571154-chr1:37841148	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CPSF6--GRM8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CPSF6^ENSG00000111605.18	chr12:69262562:+	GRM8^ENSG00000179603.18	chr7:126445313:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1219:24809:20939	.	NO_LDAS	0.0146	GT	1.9899	AG	1.8256	"[""DEEPEST2019"",""TumorFusionsNAR2018"",""ChimerSeq"",""TCGA_StarF2019"",""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:69262562-chr7:126445313	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CPSF1--OR51L1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CPSF1^ENSG00000071894.17	chr8:144397487:-	OR51L1^ENSG00000176798.3	chr11:5000522:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1114:39508:25550	.	NO_LDAS	0.0146	GT	1.9086	AG	1.7819	"[""INTERCHROMOSOMAL[chr8--chr11]""]"	chr8:144397487-chr11:5000522	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CPPED1--SNX29	1	0	1.0	0.0	ONLY_REF_SPLICE	CPPED1^ENSG00000103381.12	chr16:12781185:-	SNX29^ENSG00000048471.14	chr16:12277933:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2272:43011:19342	.	NO_LDAS	0.0146	GT	1.8295	AG	1.9656	"[""INTRACHROMOSOMAL[chr16:0.09Mb]"",""LOCAL_INVERSION:-:+:[85512]""]"	chr16:12781185-chr16:12277933	False		0	Read count too low: 1 < 5	FAIL	1
CPNE8--ANKRD36	1	0	0.5	0.0	ONLY_REF_SPLICE	CPNE8^ENSG00000139117.14	chr12:38693657:-	ANKRD36^ENSG00000135976.20	chr2:97164283:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1141:39961:23111	.	NO_LDAS	0.0073	GT	1.9219	AG	1.9656	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:38693657-chr2:97164283	False		0	Read count too low: 1 < 5	FAIL	1
COX6B1P5--COX6B1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	COX6B1P5^ENSG00000249047.2	chr4:2234457:+	COX6B1^ENSG00000126267.11	chr19:35658594:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1127:47526:9393	.	NO_LDAS	0.0146	GT	1.8323	AG	1.9656	"[""INTERCHROMOSOMAL[chr4--chr19]""]"	chr4:2234457-chr19:35658594	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
COL4A4--ZDHHC16	1	0	1.0	0.0	ONLY_REF_SPLICE	COL4A4^ENSG00000081052.13	chr2:227114628:-	ZDHHC16^ENSG00000171307.19	chr10:97454714:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2438:26241:24288	.	YES_LDAS	0.0146	GT	1.8256	AG	1.7819	"[""INTERCHROMOSOMAL[chr2--chr10]""]"	chr2:227114628-chr10:97454714	False		0	Read count too low: 1 < 5	FAIL	1
COL1A2--COL5A2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	COL1A2^ENSG00000164692.18	chr7:94425846:+	COL5A2^ENSG00000204262.14	chr2:189062902:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:24914:26418	.	YES_LDAS	0.0146	GT	1.7465	AG	1.7819	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr7--chr2]""]"	chr7:94425846-chr2:189062902	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
COL1A1--POMT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	COL1A1^ENSG00000108821.14	chr17:50196314:-	POMT1^ENSG00000130714.18	chr9:131511098:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1325:36903:1673	.	NO_LDAS	0.0146	GT	1.4566	AG	1.6049	"[""INTERCHROMOSOMAL[chr17--chr9]""]"	chr17:50196314-chr9:131511098	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
COL1A1--BRD9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	COL1A1^ENSG00000108821.14	chr17:50195923:-	BRD9^ENSG00000028310.18	chr5:866156:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:20643:9688	.	NO_LDAS	0.0146	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr5]""]"	chr17:50195923-chr5:866156	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
COL18A1--FUS	1	0	1.0	0.0	ONLY_REF_SPLICE	COL18A1^ENSG00000182871.16	chr21:45473981:+	FUS^ENSG00000089280.19	chr16:31183858:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1226:35439:28226	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9899	"[""INTERCHROMOSOMAL[chr21--chr16]""]"	chr21:45473981-chr16:31183858	False		0	Read count too low: 1 < 5	FAIL	1
CNOT3--AC025614.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CNOT3^ENSG00000088038.19	chr19:54148747:+	AC025614.2^ENSG00000287774.1	chr3:30304671:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2188:3071:11453	.	NO_LDAS	0.0146	GT	1.8295	AG	1.9656	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:54148747-chr3:30304671	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CMSS1--CRYBG3	1	0	1.0	0.0	ONLY_REF_SPLICE	CMSS1^ENSG00000184220.12	chr3:99818043:+	CRYBG3^ENSG00000080200.10	chr3:97864217:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:25132:17549	.	YES_LDAS	0.0146	GT	1.5656	AG	1.9656	"[""INTRACHROMOSOMAL[chr3:1.87Mb]""]"	chr3:99818043-chr3:97864217	False		0	Read count too low: 1 < 5	FAIL	1
CLTC--MIR183	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CLTC^ENSG00000141367.12	chr17:59647551:+	MIR183^ENSG00000207691.1	chr7:129774958:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1135:40180:4293	.	NO_LDAS	0.0146	GT	1.4295	AG	1.9656	"[""INTERCHROMOSOMAL[chr17--chr7]""]"	chr17:59647551-chr7:129774958	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CLN5--SEPTIN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CLN5^ENSG00000102805.16	chr13:76990959:+	SEPTIN2^ENSG00000168385.18	chr2:241335975:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1186:12860:1785	.	NO_LDAS	0.0146	GT	1.8062	AG	1.1033	"[""INTERCHROMOSOMAL[chr13--chr2]""]"	chr13:76990959-chr2:241335975	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CLIC6--TSC2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CLIC6^ENSG00000159212.13	chr21:34669826:+	TSC2^ENSG00000103197.18	chr16:2062500:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1410:20634:15755	.	NO_LDAS	0.0146	GT	1.7465	AG	1.6402	"[""INTERCHROMOSOMAL[chr21--chr16]""]"	chr21:34669826-chr16:2062500	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CLIC3--MSL3P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CLIC3^ENSG00000169583.13	chr9:136994664:-	MSL3P1^ENSG00000224287.2	chr2:233868415:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1130:37316:17352	.	NO_LDAS	0.0146	GT	1.4256	AG	1.3996	"[""INTERCHROMOSOMAL[chr9--chr2]""]"	chr9:136994664-chr2:233868415	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CILP--TECR	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CILP^ENSG00000138615.6	chr15:65197338:-	TECR^ENSG00000099797.15	chr19:14564182:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2418:20958:19847	.	NO_LDAS	0.0146	GC	1.6895	AG	1.7465	"[""INTERCHROMOSOMAL[chr15--chr19]""]"	chr15:65197338-chr19:14564182	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CICP1--KIF7	1	0	0.07	0.0	INCL_NON_REF_SPLICE	CICP1^ENSG00000233652.1	chrY:25389016:+	KIF7^ENSG00000166813.16	chr15:89652891:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2135:27891:15405	.	NO_LDAS	0.001	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chrY--chr15]""]"	chrY:25389016-chr15:89652891	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHSY1--AC090907.2	1	0	1.0	0.0	ONLY_REF_SPLICE	CHSY1^ENSG00000131873.7	chr15:101235082:-	AC090907.2^ENSG00000259755.1	chr15:101065664:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1129:40714:14242	.	YES_LDAS	0.0146	GT	1.8323	AG	1.9329	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr15:0.09Mb]"",""NEIGHBORS[89661]""]"	chr15:101235082-chr15:101065664	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
CHMP3--MTRNR2L3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHMP3^ENSG00000115561.16	chr2:86542292:-	MTRNR2L3^ENSG00000256222.3	chr20:57358555:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1314:49961:8090	.	NO_LDAS	0.0146	AT	1.8062	AC	1.6402	"[""INTERCHROMOSOMAL[chr2--chr20]""]"	chr2:86542292-chr20:57358555	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHD3--CYP2J2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHD3^ENSG00000170004.17	chr17:7910591:+	CYP2J2^ENSG00000134716.11	chr1:59926623:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2217:49589:20057	.	NO_LDAS	0.0146	GT	1.3753	AG	1.7819	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:7910591-chr1:59926623	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CEPT1--ATM	1	0	1.0	0.0	ONLY_REF_SPLICE	CEPT1^ENSG00000134255.14	chr1:111174963:+	ATM^ENSG00000149311.19	chr11:108243953:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2154:8532:3816	.	YES_LDAS	0.0146	GT	1.8295	AG	1.7232	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:111174963-chr11:108243953	False		0	Read count too low: 1 < 5	FAIL	1
CEP164P1--RPL30	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CEP164P1^ENSG00000226937.9	chr10:45075912:-	RPL30^ENSG00000156482.11	chr8:98045001:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2241:33587:7642	.	NO_LDAS	0.0146	GT	1.4295	AG	1.8892	"[""INTERCHROMOSOMAL[chr10--chr8]""]"	chr10:45075912-chr8:98045001	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CEACAM5--CEACAM4	1	0	0.5	0.0	ONLY_REF_SPLICE	CEACAM5^ENSG00000105388.16	chr19:41708795:+	CEACAM4^ENSG00000105352.10	chr19:41625960:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2324:8184:3186	.	NO_LDAS	0.0073	GT	1.8892	AG	1.5219	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:0.08Mb]"",""LOCAL_INVERSION:+:-:[81511]""]"	chr19:41708795-chr19:41625960	False		0	Excluded annotation pattern: DGD_PARALOGS	FAIL	1
CEACAM1--CEACAMP4	1	0	1.0	0.0	ONLY_REF_SPLICE	CEACAM1^ENSG00000079385.23	chr19:42528311:-	CEACAMP4^ENSG00000230681.1	chr19:43303536:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2486:44896:22383	.	YES_LDAS	0.0146	GT	1.9329	AG	1.5219	"[""INTRACHROMOSOMAL[chr19:0.74Mb]""]"	chr19:42528311-chr19:43303536	False		0	Read count too low: 1 < 5	FAIL	1
CDV3--ARID4A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CDV3^ENSG00000091527.16	chr3:133575115:+	ARID4A^ENSG00000032219.19	chr14:58323512:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1466:42429:1518	.	NO_LDAS	0.0146	GT	1.7968	AG	1.5628	"[""INTERCHROMOSOMAL[chr3--chr14]""]"	chr3:133575115-chr14:58323512	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CDK13--ACER3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CDK13^ENSG00000065883.16	chr7:39951852:+	ACER3^ENSG00000078124.13	chr11:76926623:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1283:16144:22411	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:39951852-chr11:76926623	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CDIN1--RACK1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CDIN1^ENSG00000186073.14	chr15:36746951:+	RACK1^ENSG00000204628.12	chr5:181241639:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:7561:18025	.	NO_LDAS	0.0146	GT	1.9656	AG	1.5656	"[""INTERCHROMOSOMAL[chr15--chr5]""]"	chr15:36746951-chr5:181241639	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CDC42SE2--MRPS6	1	0	1.0	0.0	ONLY_REF_SPLICE	CDC42SE2^ENSG00000158985.14	chr5:131264166:+	MRPS6^ENSG00000243927.6	chr21:34125341:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1456:47809:14144	.	YES_LDAS	0.0146	GT	1.5219	AG	1.9656	"[""INTERCHROMOSOMAL[chr5--chr21]""]"	chr5:131264166-chr21:34125341	False		0	Read count too low: 1 < 5	FAIL	1
CD3G--CCSAP	1	0	1.0	0.0	ONLY_REF_SPLICE	CD3G^ENSG00000160654.11	chr11:118344478:+	CCSAP^ENSG00000154429.11	chr1:229327006:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2436:30084:18810	.	YES_LDAS	0.0146	GT	1.7465	AG	1.9329	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:118344478-chr1:229327006	False		0	Read count too low: 1 < 5	FAIL	1
CD19--SF3A3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CD19^ENSG00000177455.15	chr16:28937136:+	SF3A3^ENSG00000183431.12	chr1:37969677:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2392:44840:2359	.	NO_LDAS	0.0146	GT	1.5329	AG	1.2867	"[""INTERCHROMOSOMAL[chr16--chr1]""]"	chr16:28937136-chr1:37969677	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCZ1--HP1BP3	1	0	0.5	0.0	ONLY_REF_SPLICE	CCZ1^ENSG00000122674.12	chr7:5900932:+	HP1BP3^ENSG00000127483.19	chr1:20773610:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2329:18571:6465	.	NO_LDAS	0.0073	GT	1.4566	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:5900932-chr1:20773610	False		0	Read count too low: 1 < 5	FAIL	1
CCL19--SH3BP5-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CCL19^ENSG00000172724.12	chr9:34690300:-	SH3BP5-AS1^ENSG00000224660.2	chr3:15260505:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1442:21985:7390	.	NO_LDAS	0.0146	GT	1.9899	AG	1.6895	"[""INTERCHROMOSOMAL[chr9--chr3]""]"	chr9:34690300-chr3:15260505	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCDC91--COTL1	1	0	1.0	0.0	ONLY_REF_SPLICE	CCDC91^ENSG00000123106.10	chr12:28190641:+	COTL1^ENSG00000103187.8	chr16:84590262:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1423:23482:3929	.	YES_LDAS	0.0146	GT	1.231	AG	1.9086	"[""INTERCHROMOSOMAL[chr12--chr16]""]"	chr12:28190641-chr16:84590262	False		0	Read count too low: 1 < 5	FAIL	1
CCDC88C--ILDR2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CCDC88C^ENSG00000015133.19	chr14:91338005:-	ILDR2^ENSG00000143195.13	chr1:166920802:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2290:8661:2443	.	NO_LDAS	0.0146	GT	1.8062	AG	1.8323	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:91338005-chr1:166920802	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCDC88B--SLC44A2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CCDC88B^ENSG00000168071.22	chr11:64353240:+	SLC44A2^ENSG00000129353.15	chr19:10644170:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1390:34582:4994	.	NO_LDAS	0.0146	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:64353240-chr19:10644170	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCAR2--SLC7A11-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CCAR2^ENSG00000158941.16	chr8:22613136:+	SLC7A11-AS1^ENSG00000250033.5	chr4:138098420:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2161:46668:5806	.	NO_LDAS	0.0146	GT	1.9899	AG	1.6402	"[""INTERCHROMOSOMAL[chr8--chr4]""]"	chr8:22613136-chr4:138098420	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CATSPERG--CARD19	1	0	1.0	0.0	ONLY_REF_SPLICE	CATSPERG^ENSG00000099338.23	chr19:38361861:+	CARD19^ENSG00000165233.18	chr9:93112218:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1251:29590:3102	.	YES_LDAS	0.0146	GT	1.9899	AG	1.9219	"[""INTERCHROMOSOMAL[chr19--chr9]""]"	chr19:38361861-chr9:93112218	False		0	Read count too low: 1 < 5	FAIL	1
CASP8AP2--MTRNR2L3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CASP8AP2^ENSG00000118412.13	chr6:89863120:+	MTRNR2L3^ENSG00000256222.3	chr20:57358555:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1391:36604:19566	.	NO_LDAS	0.0146	AT	1.7968	AC	1.6402	"[""INTERCHROMOSOMAL[chr6--chr20]""]"	chr6:89863120-chr20:57358555	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CARMIL1--PTCH1	1	0	1.0	0.0	ONLY_REF_SPLICE	CARMIL1^ENSG00000079691.18	chr6:25435604:+	PTCH1^ENSG00000185920.16	chr9:95485874:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1177:15263:26180	.	YES_LDAS	0.0146	GT	1.7819	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr9]""]"	chr6:25435604-chr9:95485874	False		0	Read count too low: 1 < 5	FAIL	1
CARD8--SAMHD1	1	0	1.0	0.0	ONLY_REF_SPLICE	CARD8^ENSG00000105483.18	chr19:48221730:-	SAMHD1^ENSG00000101347.10	chr20:36893066:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1463:44589:13163	.	NO_LDAS	0.0146	GT	1.8295	AG	1.8256	"[""INTERCHROMOSOMAL[chr19--chr20]""]"	chr19:48221730-chr20:36893066	False		0	Read count too low: 1 < 5	FAIL	1
CAPZA1--CAPZA2	1	0	1.0	0.0	ONLY_REF_SPLICE	CAPZA1^ENSG00000116489.13	chr1:112659779:+	CAPZA2^ENSG00000198898.14	chr7:116912069:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2425:48488:4503	.	NO_LDAS	0.0146	GT	1.9329	AG	1.6895	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:112659779-chr7:116912069	False		0	Read count too low: 1 < 5	FAIL	1
CAMK1D--LINC02161	1	0	1.0	0.0	ONLY_REF_SPLICE	CAMK1D^ENSG00000183049.13	chr10:12553356:+	LINC02161^ENSG00000250437.1	chr5:89677450:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:1995:8833	.	NO_LDAS	0.0146	GT	1.9329	AG	1.7465	"[""INTERCHROMOSOMAL[chr10--chr5]""]"	chr10:12553356-chr5:89677450	False		0	Read count too low: 1 < 5	FAIL	1
CAMK1D--AOAH	1	0	1.0	0.0	ONLY_REF_SPLICE	CAMK1D^ENSG00000183049.13	chr10:12349910:+	AOAH^ENSG00000136250.12	chr7:36637910:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2173:19745:19678	.	NO_LDAS	0.0146	GT	1.8256	AG	1.8062	"[""INTERCHROMOSOMAL[chr10--chr7]""]"	chr10:12349910-chr7:36637910	False		0	Read count too low: 1 < 5	FAIL	1
CACNA1I--LARP1B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	CACNA1I^ENSG00000100346.18	chr22:39686162:+	LARP1B^ENSG00000138709.19	chr4:128062003:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2401:2383:25367	.	NO_LDAS	0.0073	GC	1.053	AG	1.2419	"[""INTERCHROMOSOMAL[chr22--chr4]""]"	chr22:39686162-chr4:128062003	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CACNA1F--ERCC2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CACNA1F^ENSG00000102001.13	chrX:49217993:-	ERCC2^ENSG00000104884.16	chr19:45363804:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:42032:23980	.	NO_LDAS	0.0146	GT	1.8892	AG	1.5546	"[""INTERCHROMOSOMAL[chrX--chr19]""]"	chrX:49217993-chr19:45363804	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CACNA1A--GSTP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CACNA1A^ENSG00000141837.22	chr19:13371259:-	GSTP1^ENSG00000084207.18	chr11:67585138:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:9082:1631	.	NO_LDAS	0.0146	GT	1.9086	AG	1.8295	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:13371259-chr11:67585138	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C1orf43--STX8	1	0	0.5	0.0	ONLY_REF_SPLICE	C1orf43^ENSG00000143612.21	chr1:154213182:-	STX8^ENSG00000170310.15	chr17:9378653:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1173:16347:2247	.	YES_LDAS	0.0073	GT	1.9329	AG	1.9219	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:154213182-chr17:9378653	False		0	Read count too low: 1 < 5	FAIL	1
C19orf12--LHX6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C19orf12^ENSG00000131943.18	chr19:29699374:-	LHX6^ENSG00000106852.15	chr9:122228121:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1498:2537:26951	.	YES_LDAS	0.0146	GT	1.7232	AG	0.8366	"[""INTERCHROMOSOMAL[chr19--chr9]""]"	chr19:29699374-chr9:122228121	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C17orf77--TBC1D10A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C17orf77^ENSG00000182352.8	chr17:74593630:+	TBC1D10A^ENSG00000099992.16	chr22:30307865:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:12650:10837	.	YES_LDAS	0.0146	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr22]""]"	chr17:74593630-chr22:30307865	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C17orf77--AC145207.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C17orf77^ENSG00000182352.8	chr17:74584803:+	AC145207.2^ENSG00000262413.1	chr17:81868403:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1164:36046:27595	.	NO_LDAS	0.0146	GT	1.3996	AG	1.5546	"[""INTRACHROMOSOMAL[chr17:7.27Mb]""]"	chr17:74584803-chr17:81868403	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C12orf65--THEM4	1	0	1.0	0.0	ONLY_REF_SPLICE	C12orf65^ENSG00000130921.9	chr12:123248480:+	THEM4^ENSG00000159445.13	chr1:151895194:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1470:28312:6353	.	NO_LDAS	0.0146	GT	1.8295	AG	1.7232	"[""INTERCHROMOSOMAL[chr12--chr1]""]"	chr12:123248480-chr1:151895194	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
C11orf80--CMTR2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C11orf80^ENSG00000173715.18	chr11:66759096:+	CMTR2^ENSG00000180917.18	chr16:71281439:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2242:41280:8384	.	NO_LDAS	0.0146	GT	1.8295	AG	1.371	"[""INTERCHROMOSOMAL[chr11--chr16]""]"	chr11:66759096-chr16:71281439	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BZW2--HERPUD2	1	0	1.0	0.0	ONLY_REF_SPLICE	BZW2^ENSG00000136261.15	chr7:16646288:+	HERPUD2^ENSG00000122557.11	chr7:35638472:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2492:2691:12924	.	YES_LDAS	0.0146	GT	1.9219	AG	1.7232	"[""INTRACHROMOSOMAL[chr7:18.93Mb]""]"	chr7:16646288-chr7:35638472	False		0	Read count too low: 1 < 5	FAIL	1
BMS1--AL845331.1	1	0	0.07	0.0	INCL_NON_REF_SPLICE	BMS1^ENSG00000165733.8	chr10:42823784:+	AL845331.1^ENSG00000259916.1	chr2:94588497:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1280:32527:4937	.	NO_LDAS	0.001	GT	1.9656	AG	1.8062	"[""INTERCHROMOSOMAL[chr10--chr2]""]"	chr10:42823784-chr2:94588497	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BIRC6--ST3GAL5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BIRC6^ENSG00000115760.14	chr2:32431090:+	ST3GAL5^ENSG00000115525.18	chr2:85849998:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2201:35795:15391	.	NO_LDAS	0.0146	GT	1.7819	AG	1.8062	"[""INTRACHROMOSOMAL[chr2:53.22Mb]""]"	chr2:32431090-chr2:85849998	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BHLHE40--TRANK1	1	0	1.0	0.0	ONLY_REF_SPLICE	BHLHE40^ENSG00000134107.5	chr3:4981515:+	TRANK1^ENSG00000168016.15	chr3:36864480:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2266:33862:24597	.	NO_LDAS	0.0146	GT	1.9086	AG	1.9329	"[""INTRACHROMOSOMAL[chr3:31.84Mb]""]"	chr3:4981515-chr3:36864480	False		0	Read count too low: 1 < 5	FAIL	1
BEST1--CYBA	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BEST1^ENSG00000167995.17	chr11:61962242:+	CYBA^ENSG00000051523.11	chr16:88646197:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1264:35318:16273	.	NO_LDAS	0.0146	GT	1.7968	AG	1.5058	"[""INTERCHROMOSOMAL[chr11--chr16]""]"	chr11:61962242-chr16:88646197	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BCL11B--THRB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BCL11B^ENSG00000127152.18	chr14:99173324:-	THRB^ENSG00000151090.20	chr3:24119534:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2258:27236:14886	.	NO_LDAS	0.0146	GC	1.4295	AG	1.4716	"[""INTERCHROMOSOMAL[chr14--chr3]""]"	chr14:99173324-chr3:24119534	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BCAR1--NEDD9	1	0	1.0	0.0	ONLY_REF_SPLICE	BCAR1^ENSG00000050820.17	chr16:75234889:-	NEDD9^ENSG00000111859.17	chr6:11188307:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2350:24429:9463	.	YES_LDAS	0.0146	GT	1.8892	AG	1.5301	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr16--chr6]""]"	chr16:75234889-chr6:11188307	False		0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
BCAM--RN7SL865P	1	0	0.5	0.0	INCL_NON_REF_SPLICE	BCAM^ENSG00000187244.12	chr19:44814288:+	RN7SL865P^ENSG00000240205.3	chr12:115717762:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2262:29032:13317	.	NO_LDAS	0.0073	GT	1.7056	AG	1.6895	"[""INTERCHROMOSOMAL[chr19--chr12]""]"	chr19:44814288-chr12:115717762	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BACE1--BLCAP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BACE1^ENSG00000186318.17	chr11:117290564:-	BLCAP^ENSG00000166619.15	chr20:37524389:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2218:19267:17815	.	NO_LDAS	0.0146	GT	1.9086	AG	1.8323	"[""INTERCHROMOSOMAL[chr11--chr20]""]"	chr11:117290564-chr20:37524389	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
B4GALT1--DPYD	1	0	1.0	0.0	ONLY_REF_SPLICE	B4GALT1^ENSG00000086062.13	chr9:33166758:-	DPYD^ENSG00000188641.14	chr1:97515941:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:30270:10136	.	NO_LDAS	0.0146	GT	1.8062	AG	1.9656	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:33166758-chr1:97515941	False		0	Read count too low: 1 < 5	FAIL	1
B3GALT6--ZXDB	1	0	0.5	0.0	INCL_NON_REF_SPLICE	B3GALT6^ENSG00000176022.7	chr1:1232311:+	ZXDB^ENSG00000198455.5	chrX:57592294:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2109:10522:8272	.	NO_LDAS	0.0073	GC	1.1589	AG	0.9183	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:1232311-chrX:57592294	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AZIN1--XRN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AZIN1^ENSG00000155096.14	chr8:102843547:-	XRN2^ENSG00000088930.8	chr20:21333937:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1479:22422:22103	.	NO_LDAS	0.0146	GT	1.8892	AG	1.7465	"[""INTERCHROMOSOMAL[chr8--chr20]""]"	chr8:102843547-chr20:21333937	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AVL9--BBS9	1	0	1.0	0.0	ONLY_REF_SPLICE	AVL9^ENSG00000105778.19	chr7:32495802:+	BBS9^ENSG00000122507.21	chr7:33336441:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2265:2691:29039	.	YES_LDAS	0.0146	GT	1.7819	AG	1.585	"[""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr7:0.52Mb]""]"	chr7:32495802-chr7:33336441	False		0	Read count too low: 1 < 5	FAIL	1
AUTS2--CPEB4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AUTS2^ENSG00000158321.18	chr7:69598407:+	CPEB4^ENSG00000113742.14	chr5:173888409:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1288:48642:11159	.	NO_LDAS	0.0146	GT	0.9183	AG	1.1589	"[""INTERCHROMOSOMAL[chr7--chr5]""]"	chr7:69598407-chr5:173888409	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATP8B1--NEDD4L	1	0	1.0	0.0	ONLY_REF_SPLICE	ATP8B1^ENSG00000081923.15	chr18:57802998:-	NEDD4L^ENSG00000049759.20	chr18:58165788:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1239:19745:12896	.	NO_LDAS	0.0146	GT	1.5301	AG	1.9656	"[""INTRACHROMOSOMAL[chr18:0.24Mb]""]"	chr18:57802998-chr18:58165788	False		0	Read count too low: 1 < 5	FAIL	1
ATP5F1D--VRK1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATP5F1D^ENSG00000099624.8	chr19:1241991:+	VRK1^ENSG00000100749.9	chr14:96884915:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2260:15991:11159	.	NO_LDAS	0.0146	GT	1.7232	AG	1.8295	"[""INTERCHROMOSOMAL[chr19--chr14]""]"	chr19:1241991-chr14:96884915	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATP5F1D--MYH13	1	0	1.0	0.0	ONLY_REF_SPLICE	ATP5F1D^ENSG00000099624.8	chr19:1241991:+	MYH13^ENSG00000006788.14	chr17:10330523:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1416:8524:5400	.	NO_LDAS	0.0146	GT	1.7232	AG	1.8295	"[""INTERCHROMOSOMAL[chr19--chr17]""]"	chr19:1241991-chr17:10330523	False		0	Read count too low: 1 < 5	FAIL	1
ATP5F1B--CALR	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATP5F1B^ENSG00000110955.9	chr12:56645220:-	CALR^ENSG00000179218.15	chr19:12938587:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:42097:5288	.	NO_LDAS	0.0146	GT	1.9656	AG	1.6402	"[""INTERCHROMOSOMAL[chr12--chr19]""]"	chr12:56645220-chr19:12938587	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATP10B--THBS3	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ATP10B^ENSG00000118322.14	chr5:160632329:-	THBS3^ENSG00000169231.13	chr1:155198220:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1334:8896:16161	.	NO_LDAS	0.0073	GT	1.9656	AG	1.7968	"[""INTERCHROMOSOMAL[chr5--chr1]""]"	chr5:160632329-chr1:155198220	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATG2B--EMP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATG2B^ENSG00000066739.12	chr14:96343207:-	EMP1^ENSG00000134531.10	chr12:13211488:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1332:26427:17128	.	NO_LDAS	0.0146	GT	1.8892	AG	1.1033	"[""INTERCHROMOSOMAL[chr14--chr12]""]"	chr14:96343207-chr12:13211488	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATG13--SLC25A42	1	0	1.0	0.0	ONLY_REF_SPLICE	ATG13^ENSG00000175224.16	chr11:46630100:+	SLC25A42^ENSG00000181035.14	chr19:19096091:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2152:2222:6311	.	YES_LDAS	0.0146	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:46630100-chr19:19096091	False		0	Read count too low: 1 < 5	FAIL	1
ASB16--NLRC5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ASB16^ENSG00000161664.7	chr17:44170501:+	NLRC5^ENSG00000140853.16	chr16:57028084:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:28158:19987	.	NO_LDAS	0.0146	GT	1.3383	AG	1.6729	"[""INTERCHROMOSOMAL[chr17--chr16]""]"	chr17:44170501-chr16:57028084	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARRB1--SBNO2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARRB1^ENSG00000137486.17	chr11:75265261:-	SBNO2^ENSG00000064932.16	chr19:1123606:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1277:2262:2822	.	NO_LDAS	0.0146	GT	1.1589	AG	1.6402	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:75265261-chr19:1123606	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARRB1--POLR3E	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARRB1^ENSG00000137486.17	chr11:75265261:-	POLR3E^ENSG00000058600.16	chr16:22325937:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2172:17787:29459	.	NO_LDAS	0.0146	GT	1.1589	AG	1.3996	"[""INTERCHROMOSOMAL[chr11--chr16]""]"	chr11:75265261-chr16:22325937	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARRB1--KRI1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARRB1^ENSG00000137486.17	chr11:75265261:-	KRI1^ENSG00000129347.21	chr19:10561237:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:22908:9912	.	NO_LDAS	0.0146	GT	1.1589	AG	1.7465	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:75265261-chr19:10561237	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARRB1--ITPRID2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARRB1^ENSG00000137486.17	chr11:75265261:-	ITPRID2^ENSG00000138434.17	chr2:181892226:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2430:24307:8777	.	NO_LDAS	0.0146	GT	1.1589	AG	1.3996	"[""INTERCHROMOSOMAL[chr11--chr2]""]"	chr11:75265261-chr2:181892226	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARPC1B--C9orf116	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARPC1B^ENSG00000130429.15	chr7:99392876:+	C9orf116^ENSG00000160345.13	chr9:135500287:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2205:21985:15629	.	NO_LDAS	0.0146	GT	1.8062	AG	1.9329	"[""INTERCHROMOSOMAL[chr7--chr9]""]"	chr7:99392876-chr9:135500287	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARMH3--BACH2	1	0	1.0	0.0	ONLY_REF_SPLICE	ARMH3^ENSG00000120029.13	chr10:101956597:-	BACH2^ENSG00000112182.15	chr6:89951862:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1384:28571:28324	.	YES_LDAS	0.0146	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr10--chr6]""]"	chr10:101956597-chr6:89951862	False		0	Read count too low: 1 < 5	FAIL	1
ARL4C--LAMA5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARL4C^ENSG00000188042.8	chr2:234496612:-	LAMA5^ENSG00000130702.15	chr20:62311286:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1333:8087:4811	.	NO_LDAS	0.0146	GT	1.3383	AG	1.5546	"[""INTERCHROMOSOMAL[chr2--chr20]""]"	chr2:234496612-chr20:62311286	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARHGAP35--YWHAE	1	0	1.0	0.0	ONLY_REF_SPLICE	ARHGAP35^ENSG00000160007.19	chr19:46861209:+	YWHAE^ENSG00000108953.17	chr17:1365058:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2209:7828:9407	.	YES_LDAS	0.0146	GT	1.6895	AG	1.7819	"[""INTERCHROMOSOMAL[chr19--chr17]""]"	chr19:46861209-chr17:1365058	False		0	Read count too low: 1 < 5	FAIL	1
ARHGAP35--TP73	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ARHGAP35^ENSG00000160007.19	chr19:47000612:+	TP73^ENSG00000078900.15	chr1:3733812:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:37373:16301	.	NO_LDAS	0.0073	GT	1.5546	AG	1.5301	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:47000612-chr1:3733812	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARHGAP35--NR2F2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ARHGAP35^ENSG00000160007.19	chr19:47000612:+	NR2F2^ENSG00000185551.15	chr15:96331529:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:37373:16301	.	NO_LDAS	0.0073	GT	1.5546	AG	1.231	"[""INTERCHROMOSOMAL[chr19--chr15]""]"	chr19:47000612-chr15:96331529	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARHGAP27--FOXP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARHGAP27^ENSG00000159314.11	chr17:45405676:-	FOXP1^ENSG00000114861.23	chr3:71582084:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1108:7674:4377	.	NO_LDAS	0.0146	GT	1.4295	AG	1.4256	"[""INTERCHROMOSOMAL[chr17--chr3]""]"	chr17:45405676-chr3:71582084	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARHGAP25--SESTD1	1	0	1.0	0.0	ONLY_REF_SPLICE	ARHGAP25^ENSG00000163219.12	chr2:68735260:+	SESTD1^ENSG00000187231.14	chr2:179191866:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2138:33522:15909	.	YES_LDAS	0.0146	GT	1.8323	AG	1.7465	"[""INTRACHROMOSOMAL[chr2:110.27Mb]""]"	chr2:68735260-chr2:179191866	False		0	Read count too low: 1 < 5	FAIL	1
APBB1IP--CLIC4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	APBB1IP^ENSG00000077420.16	chr10:26503274:+	CLIC4^ENSG00000169504.15	chr1:24745614:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1307:48731:17591	.	NO_LDAS	0.0146	GT	1.8323	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr1]""]"	chr10:26503274-chr1:24745614	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANXA2P2--ASPHD2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ANXA2P2^ENSG00000231991.4	chr9:33624802:+	ASPHD2^ENSG00000128203.7	chr22:26443097:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1379:15748:13709	.	NO_LDAS	0.0146	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr9--chr22]""]"	chr9:33624802-chr22:26443097	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANTXR2--FBXO8	1	0	1.0	0.0	ONLY_REF_SPLICE	ANTXR2^ENSG00000163297.18	chr4:79977621:-	FBXO8^ENSG00000164117.14	chr4:174263100:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1184:34428:11453	.	YES_LDAS	0.0146	GT	1.5628	AG	1.8892	"[""INTRACHROMOSOMAL[chr4:94.11Mb]""]"	chr4:79977621-chr4:174263100	False		0	Read count too low: 1 < 5	FAIL	1
ANO8--TNFRSF11A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ANO8^ENSG00000074855.11	chr19:17327438:-	TNFRSF11A^ENSG00000141655.17	chr18:62387033:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2235:45972:4713	.	NO_LDAS	0.0146	GT	1.7968	AG	1.5329	"[""INTERCHROMOSOMAL[chr19--chr18]""]"	chr19:17327438-chr18:62387033	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANO6--CLASP1	1	0	1.0	0.0	ONLY_REF_SPLICE	ANO6^ENSG00000177119.17	chr12:45302093:+	CLASP1^ENSG00000074054.20	chr2:121606180:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1112:3775:27469	.	YES_LDAS	0.0146	GT	1.9656	AG	1.9329	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:45302093-chr2:121606180	False		0	Read count too low: 1 < 5	FAIL	1
ANKRD44--CCDC141	1	0	1.0	0.0	ONLY_REF_SPLICE	ANKRD44^ENSG00000065413.20	chr2:197025196:-	CCDC141^ENSG00000163492.15	chr2:178978675:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2407:20804:16638	.	YES_LDAS	0.0146	GT	1.7465	AG	1.8892	"[""INTRACHROMOSOMAL[chr2:17.92Mb]""]"	chr2:197025196-chr2:178978675	False		0	Read count too low: 1 < 5	FAIL	1
ANKRD36--SIDT2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ANKRD36^ENSG00000135976.20	chr2:97204096:+	SIDT2^ENSG00000149577.16	chr11:117188322:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2342:30448:2962	.	NO_LDAS	0.0146	GT	1.9329	AG	1.9086	"[""INTERCHROMOSOMAL[chr2--chr11]""]"	chr2:97204096-chr11:117188322	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANKRD26--ANKRD36BP2	1	0	1.0	0.0	ONLY_REF_SPLICE	ANKRD26^ENSG00000107890.17	chr10:27053320:-	ANKRD36BP2^ENSG00000230006.7	chr2:88782734:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1489:35625:23083	.	NO_LDAS	0.0146	GT	1.6895	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr2]""]"	chr10:27053320-chr2:88782734	False		0	Read count too low: 1 < 5	FAIL	1
ANKLE2--TMEM132B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ANKLE2^ENSG00000176915.15	chr12:132742187:-	TMEM132B^ENSG00000139364.10	chr12:125587205:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1169:5296:13849	.	YES_LDAS	0.0073	GT	0.9968	AG	1.2867	"[""INTRACHROMOSOMAL[chr12:7.06Mb]""]"	chr12:132742187-chr12:125587205	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AMOTL1--GNAI3	1	0	1.0	0.0	ONLY_REF_SPLICE	AMOTL1^ENSG00000166025.18	chr11:94768560:+	GNAI3^ENSG00000065135.12	chr1:109573737:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2118:8888:19510	.	YES_LDAS	0.0146	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:94768560-chr1:109573737	False		0	Read count too low: 1 < 5	FAIL	1
ALS2--ERCC5	1	0	1.0	0.0	ONLY_REF_SPLICE	ALS2^ENSG00000003393.16	chr2:201753146:-	ERCC5^ENSG00000134899.23	chr13:102853757:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2276:13426:10332	.	NO_LDAS	0.0146	GT	1.9086	AG	1.5628	"[""INTERCHROMOSOMAL[chr2--chr13]""]"	chr2:201753146-chr13:102853757	False		0	Read count too low: 1 < 5	FAIL	1
AL645638.1--UBE2D2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL645638.1^ENSG00000232576.2	chrX:88908526:+	UBE2D2^ENSG00000131508.16	chr5:139614861:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1284:6461:18277	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9086	"[""INTERCHROMOSOMAL[chrX--chr5]""]"	chrX:88908526-chr5:139614861	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL390957.1--POU2F1	1	0	1.0	0.0	ONLY_REF_SPLICE	AL390957.1^ENSG00000285280.2	chr1:192925612:-	POU2F1^ENSG00000143190.23	chr1:167332470:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1316:28506:26699	.	NO_LDAS	0.0146	GT	1.7819	AG	1.7232	"[""INTRACHROMOSOMAL[chr1:24.74Mb]""]"	chr1:192925612-chr1:167332470	False		0	Read count too low: 1 < 5	FAIL	1
AL365258.2--RPL24P7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL365258.2^ENSG00000235582.2	chr1:197735996:+	RPL24P7^ENSG00000215016.2	chr3:23134667:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1123:22843:18768	.	NO_LDAS	0.0146	GT	1.5546	AG	1.8892	"[""TCGA_StarF2019"",""INTERCHROMOSOMAL[chr1--chr3]""]"	chr1:197735996-chr3:23134667	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL354993.1--VPS13C	1	0	0.33	0.0	INCL_NON_REF_SPLICE	AL354993.1^ENSG00000231703.2	chr20:53399565:-	VPS13C^ENSG00000129003.19	chr15:61910305:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1339:7553:6773	.	NO_LDAS	0.0048	GT	1.7232	AG	1.7465	"[""INTERCHROMOSOMAL[chr20--chr15]""]"	chr20:53399565-chr15:61910305	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL354821.1--KLHDC3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL354821.1^ENSG00000274090.1	chr13:55536181:-	KLHDC3^ENSG00000124702.18	chr6:43019288:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1261:49411:28072	.	NO_LDAS	0.0146	GT	1.6402	AG	1.9899	"[""INTERCHROMOSOMAL[chr13--chr6]""]"	chr13:55536181-chr6:43019288	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL121761.1--RPL19	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL121761.1^ENSG00000268628.2	chr20:19757816:-	RPL19^ENSG00000108298.12	chr17:39203047:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1278:6784:28758	.	NO_LDAS	0.0146	GT	1.5058	AG	1.8256	"[""INTERCHROMOSOMAL[chr20--chr17]""]"	chr20:19757816-chr17:39203047	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL049874.2--AC004223.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL049874.2^ENSG00000244756.1	chr14:60572181:-	AC004223.1^ENSG00000243423.1	chr17:35076852:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:51999:28212	.	YES_LDAS	0.0146	GT	1.5058	AG	1.9899	"[""INTERCHROMOSOMAL[chr14--chr17]""]"	chr14:60572181-chr17:35076852	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL034546.1--RAP1GDS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL034546.1^ENSG00000280395.1	chr22:50095054:+	RAP1GDS1^ENSG00000138698.15	chr4:98261478:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2120:32009:3480	.	YES_LDAS	0.0146	GT	0.7219	AG	1.5329	"[""INTERCHROMOSOMAL[chr22--chr4]""]"	chr22:50095054-chr4:98261478	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL008729.1--STX8	1	0	0.5	0.0	ONLY_REF_SPLICE	AL008729.1^ENSG00000215022.7	chr6:13281429:-	STX8^ENSG00000170310.15	chr17:9378653:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1173:16347:2247	.	YES_LDAS	0.0073	GT	1.9329	AG	1.9219	"[""INTERCHROMOSOMAL[chr6--chr17]""]"	chr6:13281429-chr17:9378653	False		0	Read count too low: 1 < 5	FAIL	1
AKR1B1--CLASRP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AKR1B1^ENSG00000085662.14	chr7:134451366:-	CLASRP^ENSG00000104859.15	chr19:45064035:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2326:17787:26068	.	NO_LDAS	0.0146	GT	1.9656	AG	1.6729	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:134451366-chr19:45064035	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AKNA--SCAF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AKNA^ENSG00000106948.17	chr9:114361704:-	SCAF1^ENSG00000126461.15	chr19:49653513:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1306:14340:10767	.	NO_LDAS	0.0146	GT	1.8295	AG	1.7232	"[""INTERCHROMOSOMAL[chr9--chr19]""]"	chr9:114361704-chr19:49653513	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AK8--SURF4	1	0	1.0	0.0	ONLY_REF_SPLICE	AK8^ENSG00000165695.10	chr9:132854857:-	SURF4^ENSG00000148248.14	chr9:133363759:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2104:29558:3859	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9329	"[""INTRACHROMOSOMAL[chr9:0.48Mb]""]"	chr9:132854857-chr9:133363759	False		0	Read count too low: 1 < 5	FAIL	1
AIFM2--SAR1A	1	0	1.0	0.0	ONLY_REF_SPLICE	AIFM2^ENSG00000042286.15	chr10:70114920:-	SAR1A^ENSG00000079332.15	chr10:70161931:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1290:14357:1603	.	YES_LDAS	0.0146	GT	1.8256	AG	1.7819	"[""INTRACHROMOSOMAL[chr10:0.01Mb]"",""LOCAL_REARRANGEMENT:-:[14355]""]"	chr10:70114920-chr10:70161931	False		0	Read count too low: 1 < 5	FAIL	1
AHCYP3--LTF	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AHCYP3^ENSG00000233955.1	chr2:104396110:-	LTF^ENSG00000012223.13	chr3:46459794:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2389:11630:12322	.	NO_LDAS	0.0146	GT	1.9329	AG	1.6895	"[""INTERCHROMOSOMAL[chr2--chr3]""]"	chr2:104396110-chr3:46459794	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AHCYL2--ANKRD44	1	0	1.0	0.0	ONLY_REF_SPLICE	AHCYL2^ENSG00000158467.16	chr7:129225439:+	ANKRD44^ENSG00000065413.20	chr2:197187106:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2270:30553:13933	.	NO_LDAS	0.0146	GT	1.8062	AG	1.9656	"[""INTERCHROMOSOMAL[chr7--chr2]""]"	chr7:129225439-chr2:197187106	False		0	Read count too low: 1 < 5	FAIL	1
AGPS--STAM2	1	0	1.0	0.0	ONLY_REF_SPLICE	AGPS^ENSG00000018510.18	chr2:177420358:+	STAM2^ENSG00000115145.10	chr2:152150229:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1453:15133:27497	.	YES_LDAS	0.0146	GT	1.7819	AG	1.6729	"[""INTRACHROMOSOMAL[chr2:25.22Mb]""]"	chr2:177420358-chr2:152150229	False		0	Read count too low: 1 < 5	FAIL	1
AGAP4--RET	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AGAP4^ENSG00000188234.14	chr10:45825938:-	RET^ENSG00000165731.20	chr10:43112894:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2380:48310:19580	.	NO_LDAS	0.0146	GC	1.9329	AG	1.6402	"[""INTRACHROMOSOMAL[chr10:2.70Mb]""]"	chr10:45825938-chr10:43112894	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AGAP3--TSNARE1	1	0	1.0	0.0	ONLY_REF_SPLICE	AGAP3^ENSG00000133612.19	chr7:151087072:+	TSNARE1^ENSG00000171045.16	chr8:142315089:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1367:9365:9015	.	YES_LDAS	0.0146	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr8]""]"	chr7:151087072-chr8:142315089	False		0	Read count too low: 1 < 5	FAIL	1
AGAP10P--AC022400.4	1	0	0.12	0.0	INCL_NON_REF_SPLICE	AGAP10P^ENSG00000230869.1	chr10:45684520:+	AC022400.4^ENSG00000272140.2	chr10:73713332:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1201:28652:28997	.	YES_LDAS	0.0018	GT	1.7465	AG	1.9086	"[""INTRACHROMOSOMAL[chr10:28.00Mb]""]"	chr10:45684520-chr10:73713332	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
ADGRF1--TOX2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ADGRF1^ENSG00000153292.16	chr6:47013520:-	TOX2^ENSG00000124191.18	chr20:44054368:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1473:29072:14256	.	NO_LDAS	0.0146	GT	1.9329	AG	1.8062	"[""INTERCHROMOSOMAL[chr6--chr20]""]"	chr6:47013520-chr20:44054368	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ADARB2--UBAC2	1	0	1.0	0.0	ONLY_REF_SPLICE	ADARB2^ENSG00000185736.16	chr10:1737051:-	UBAC2^ENSG00000134882.16	chr13:99238427:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1474:51514:26418	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9656	"[""INTERCHROMOSOMAL[chr10--chr13]""]"	chr10:1737051-chr13:99238427	False		0	Read count too low: 1 < 5	FAIL	1
ADARB1--AC106798.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ADARB1^ENSG00000197381.16	chr21:45128577:+	AC106798.1^ENSG00000250421.5	chr5:67824042:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2183:5959:12644	.	NO_LDAS	0.0146	GT	1.7465	AG	1.5628	"[""INTERCHROMOSOMAL[chr21--chr5]""]"	chr21:45128577-chr5:67824042	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ADAR--CELF1	1	0	1.0	0.0	ONLY_REF_SPLICE	ADAR^ENSG00000160710.18	chr1:154601041:-	CELF1^ENSG00000149187.18	chr11:47483532:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2244:28474:6941	.	YES_LDAS	0.0146	GT	1.7968	AG	1.6895	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:154601041-chr11:47483532	False		0	Read count too low: 1 < 5	FAIL	1
ADAP1--ARHGEF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ADAP1^ENSG00000105963.15	chr7:899241:-	ARHGEF1^ENSG00000076928.18	chr19:41888192:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2304:42227:24653	.	NO_LDAS	0.0146	GT	1.8892	AG	1.3753	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:899241-chr19:41888192	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ADAMTS7P4--CAPN7	1	0	1.0	0.0	ONLY_REF_SPLICE	ADAMTS7P4^ENSG00000218052.5	chr15:85273992:-	CAPN7^ENSG00000131375.10	chr3:15212104:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1267:7351:5078	.	YES_LDAS	0.0146	GT	1.9329	AG	1.8256	"[""INTERCHROMOSOMAL[chr15--chr3]""]"	chr15:85273992-chr3:15212104	False		0	Read count too low: 1 < 5	FAIL	1
ADAMTS10--CST2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ADAMTS10^ENSG00000142303.14	chr19:8580438:-	CST2^ENSG00000170369.4	chr20:23823778:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1462:28069:5540	.	NO_LDAS	0.0146	GT	0.9056	AG	1.7465	"[""INTERCHROMOSOMAL[chr19--chr20]""]"	chr19:8580438-chr20:23823778	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ADAM10--SPNS2	1	0	1.0	0.0	ONLY_REF_SPLICE	ADAM10^ENSG00000137845.15	chr15:58749480:-	SPNS2^ENSG00000183018.9	chr17:4513247:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1408:45705:24541	.	YES_LDAS	0.0146	GT	1.4256	AG	1.9329	"[""INTERCHROMOSOMAL[chr15--chr17]""]"	chr15:58749480-chr17:4513247	False		0	Read count too low: 1 < 5	FAIL	1
ACVR1B--STX6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ACVR1B^ENSG00000135503.13	chr12:51986852:+	STX6^ENSG00000135823.14	chr1:181002700:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2482:21840:8090	.	NO_LDAS	0.0146	AT	1.8323	AC	1.8892	"[""INTERCHROMOSOMAL[chr12--chr1]""]"	chr12:51986852-chr1:181002700	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ACVR1B--PRKCI	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ACVR1B^ENSG00000135503.13	chr12:51951737:+	PRKCI^ENSG00000163558.13	chr3:170222716:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1190:28935:9814	.	NO_LDAS	0.0146	GT	1.1589	AG	1.1589	"[""INTERCHROMOSOMAL[chr12--chr3]""]"	chr12:51951737-chr3:170222716	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ACP1--CYRIA	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ACP1^ENSG00000143727.16	chr2:272150:+	CYRIA^ENSG00000197872.11	chr2:16624016:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2276:34476:7530	.	YES_LDAS	0.0146	GT	1.8323	AG	1.9329	"[""INTRACHROMOSOMAL[chr2:16.27Mb]""]"	chr2:272150-chr2:16624016	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ACAT1--RPL13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ACAT1^ENSG00000075239.14	chr11:108138900:+	RPL13^ENSG00000167526.14	chr16:89560940:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2410:6720:12252	.	NO_LDAS	0.0146	GT	1.9086	AG	1.6895	"[""INTERCHROMOSOMAL[chr11--chr16]""]"	chr11:108138900-chr16:89560940	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC241585.1--EXOC4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC241585.1^ENSG00000223612.3	chr1:145233191:+	EXOC4^ENSG00000131558.15	chr7:133630045:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2209:35633:14073	.	YES_LDAS	0.0073	GT	1.7819	AG	1.9219	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:145233191-chr7:133630045	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC138393.1--SEPTIN14	1	0	0.33	0.0	ONLY_REF_SPLICE	AC138393.1^ENSG00000229930.1	chr1:224030704:-	SEPTIN14^ENSG00000154997.9	chr7:55796092:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1417:2205:15755	.	NO_LDAS	0.0048	GT	1.7819	AG	1.9899	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:224030704-chr7:55796092	False		0	Read count too low: 1 < 5	FAIL	1
AC130509.1--PGK1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC130509.1^ENSG00000243596.1	chr3:146344158:-	PGK1^ENSG00000102144.15	chrX:78125790:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:51255:25101	.	NO_LDAS	0.0146	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chrX]""]"	chr3:146344158-chrX:78125790	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC124016.1--VNN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC124016.1^ENSG00000273156.2	chr4:82345626:-	VNN2^ENSG00000112303.14	chr6:132749865:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1465:20942:6955	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr4--chr6]""]"	chr4:82345626-chr6:132749865	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC105020.3--ASAH1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC105020.3^ENSG00000260235.1	chr15:75625696:+	ASAH1^ENSG00000104763.20	chr8:18075587:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2346:18571:27147	.	NO_LDAS	0.0146	GC	1.5329	AG	1.8892	"[""INTERCHROMOSOMAL[chr15--chr8]""]"	chr15:75625696-chr8:18075587	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC092828.1--JMJD7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC092828.1^ENSG00000253284.2	chr12:19153992:+	JMJD7^ENSG00000243789.11	chr15:41836148:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1256:20020:17773	.	NO_LDAS	0.0146	GT	1.8295	AG	1.9086	"[""INTERCHROMOSOMAL[chr12--chr15]""]"	chr12:19153992-chr15:41836148	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC092068.3--SPG11	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC092068.3^ENSG00000267749.1	chr19:2642235:-	SPG11^ENSG00000104133.15	chr15:44584087:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1333:21929:2948	.	NO_LDAS	0.0146	GT	1.9899	AG	1.7968	"[""INTERCHROMOSOMAL[chr19--chr15]""]"	chr19:2642235-chr15:44584087	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC083906.3--C3orf33	1	0	1.0	0.0	ONLY_REF_SPLICE	AC083906.3^ENSG00000250643.1	chr3:129969198:-	C3orf33^ENSG00000174928.16	chr3:155802591:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:23523:3522	.	NO_LDAS	0.0146	GT	1.7819	AG	1.8892	"[""INTRACHROMOSOMAL[chr3:25.79Mb]""]"	chr3:129969198-chr3:155802591	False		0	Read count too low: 1 < 5	FAIL	1
AC083864.5--AL512310.8	1	0	0.25	0.0	INCL_NON_REF_SPLICE	AC083864.5^ENSG00000287893.1	chr7:36011879:-	AL512310.8^ENSG00000258324.2	chr14:19653735:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2256:34557:13359	.	NO_LDAS	0.0037	GT	1.8892	AG	1.9899	"[""INTERCHROMOSOMAL[chr7--chr14]""]"	chr7:36011879-chr14:19653735	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC078845.1--LRBA	1	0	1.0	0.0	ONLY_REF_SPLICE	AC078845.1^ENSG00000232053.7	chr7:136117188:+	LRBA^ENSG00000198589.14	chr4:150808398:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1453:43723:12728	.	YES_LDAS	0.0146	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr7--chr4]""]"	chr7:136117188-chr4:150808398	False		0	Read count too low: 1 < 5	FAIL	1
AC027129.1--SH3RF2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC027129.1^ENSG00000288077.1	chr3:15503696:+	SH3RF2^ENSG00000156463.18	chr5:146055981:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1387:37632:28492	.	NO_LDAS	0.0146	GT	1.7819	AG	1.9086	"[""INTERCHROMOSOMAL[chr3--chr5]""]"	chr3:15503696-chr5:146055981	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC026765.3--BCORL1	1	0	1.0	0.0	ONLY_REF_SPLICE	AC026765.3^ENSG00000257817.2	chr12:114748210:+	BCORL1^ENSG00000085185.16	chrX:130012578:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1148:6259:9211	.	NO_LDAS	0.0146	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr12--chrX]""]"	chr12:114748210-chrX:130012578	False		0	Read count too low: 1 < 5	FAIL	1
AC025178.1--GOLPH3	1	0	1.0	0.0	ONLY_REF_SPLICE	AC025178.1^ENSG00000250764.1	chr5:32106124:-	GOLPH3^ENSG00000113384.14	chr5:32143880:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1181:11307:15377	.	YES_LDAS	0.0146	GT	1.9329	AG	1.8892	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr5:0.00Mb]"",""LOCAL_REARRANGEMENT:-:[2775]""]"	chr5:32106124-chr5:32143880	False		0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	1
AC023442.1--NACA	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC023442.1^ENSG00000254668.1	chr11:41797679:+	NACA^ENSG00000196531.14	chr12:56714648:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1462:29533:26797	.	NO_LDAS	0.0073	GT	1.7819	AG	1.8323	"[""INTERCHROMOSOMAL[chr11--chr12]""]"	chr11:41797679-chr12:56714648	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC016831.6--PLXND1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC016831.6^ENSG00000285106.2	chr7:131108216:-	PLXND1^ENSG00000004399.13	chr3:129606583:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2450:24364:1729	.	NO_LDAS	0.0146	GT	1.231	AG	1.4256	"[""INTERCHROMOSOMAL[chr7--chr3]""]"	chr7:131108216-chr3:129606583	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC012443.1--RPL22	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC012443.1^ENSG00000270776.1	chr2:152539305:-	RPL22^ENSG00000116251.11	chr1:6193051:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:2909:22495	.	NO_LDAS	0.0073	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:152539305-chr1:6193051	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC009093.8--AC138512.1	1	0	1.0	0.0	ONLY_REF_SPLICE	AC009093.8^ENSG00000284649.1	chr16:29116326:+	AC138512.1^ENSG00000261273.1	chr16:88276474:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1154:52121:23013	.	NO_LDAS	0.0146	GT	1.8892	AG	1.9086	"[""INTRACHROMOSOMAL[chr16:59.12Mb]""]"	chr16:29116326-chr16:88276474	False		0	Read count too low: 1 < 5	FAIL	1
AC007384.1--SCAF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC007384.1^ENSG00000237513.2	chr7:105000584:+	SCAF1^ENSG00000126461.15	chr19:49652349:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2345:27996:12336	.	YES_LDAS	0.0146	GT	1.9656	AG	1.6729	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:105000584-chr19:49652349	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC005884.1--EHD4	1	0	0.33	0.0	INCL_NON_REF_SPLICE	AC005884.1^ENSG00000267207.1	chr17:61070025:-	EHD4^ENSG00000103966.11	chr15:41899650:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2475:51522:27918	.	NO_LDAS	0.0048	GT	1.9656	AG	1.5656	"[""INTERCHROMOSOMAL[chr17--chr15]""]"	chr17:61070025-chr15:41899650	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC005759.1--MGRN1	1	0	1.0	0.0	ONLY_REF_SPLICE	AC005759.1^ENSG00000268650.3	chr19:18217307:+	MGRN1^ENSG00000102858.13	chr16:4650365:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2114:43408:9155	.	NO_LDAS	0.0146	GT	1.8256	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:18217307-chr16:4650365	False		0	Read count too low: 1 < 5	FAIL	1
AC005332.4--C5orf24	1	0	1.0	0.0	ONLY_REF_SPLICE	AC005332.4^ENSG00000274712.2	chr17:68206238:+	C5orf24^ENSG00000181904.9	chr5:134854898:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1428:29275:13541	.	NO_LDAS	0.0146	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr5]""]"	chr17:68206238-chr5:134854898	False		0	Read count too low: 1 < 5	FAIL	1
AC005034.6--SUMO2P17	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC005034.6^ENSG00000286045.1	chr2:75725664:+	SUMO2P17^ENSG00000248278.1	chr17:48892389:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2120:46579:23280	.	NO_LDAS	0.0146	GT	1.3383	AG	1.2419	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:75725664-chr17:48892389	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC004923.1--ENPP7P4	1	0	0.5	0.0	ONLY_REF_SPLICE	AC004923.1^ENSG00000254610.3	chr11:67955482:-	ENPP7P4^ENSG00000241278.1	chr3:125909203:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1353:7877:14536	.	YES_LDAS	0.0073	GT	1.4566	AG	1.5219	"[""TCGA_StarF2019"",""CCLE_StarF2019"",""INTERCHROMOSOMAL[chr11--chr3]""]"	chr11:67955482-chr3:125909203	False		0	Read count too low: 1 < 5	FAIL	1
ABLIM3--PTPRB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ABLIM3^ENSG00000173210.20	chr5:149251419:+	PTPRB^ENSG00000127329.16	chr12:70558894:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2297:39355:28338	.	NO_LDAS	0.0146	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr5--chr12]""]"	chr5:149251419-chr12:70558894	True	pair|recurrent breakpoints	0	Blacklisted	FAIL	1
ABCD3--ACSM2A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ABCD3^ENSG00000117528.14	chr1:94464873:+	ACSM2A^ENSG00000183747.12	chr16:20487100:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2263:2432:7235	.	NO_LDAS	0.0073	GT	1.7819	AG	0.9183	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:94464873-chr16:20487100	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ABCC5--SNX31	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ABCC5^ENSG00000114770.17	chr3:183977517:-	SNX31^ENSG00000174226.9	chr8:100573609:-	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2379:35933:6941	.	NO_LDAS	0.0146	GT	1.8256	AG	1.371	"[""INTERCHROMOSOMAL[chr3--chr8]""]"	chr3:183977517-chr8:100573609	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AAK1--AC104257.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AAK1^ENSG00000115977.21	chr2:69465439:-	AC104257.1^ENSG00000253507.5	chr8:131315760:+	&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2468:34307:10542	.	NO_LDAS	0.0073	GC	1.8256	AG	1.7232	"[""INTERCHROMOSOMAL[chr2--chr8]""]"	chr2:69465439-chr8:131315760	False		0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1