File Info

Filename
OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/star_for_arriba/OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1.Log.final.out
Size
2.0 KB
Published
Mar 03, 2026 4:57 PM
                                 Started job on |	Mar 04 00:18:36
                             Started mapping on |	Mar 04 00:20:19
                                    Finished on |	Mar 04 00:53:38
       Mapping speed, Million of reads per hour |	177.55

                          Number of input reads |	98587816
                      Average input read length |	234
                                    UNIQUE READS:
                   Uniquely mapped reads number |	93769287
                        Uniquely mapped reads % |	95.11%
                          Average mapped length |	235.01
                       Number of splices: Total |	102598021
            Number of splices: Annotated (sjdb) |	101625401
                       Number of splices: GT/AG |	101527390
                       Number of splices: GC/AG |	682885
                       Number of splices: AT/AC |	79438
               Number of splices: Non-canonical |	308308
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.10
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.59
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	3424477
             % of reads mapped to multiple loci |	3.47%
        Number of reads mapped to too many loci |	24605
             % of reads mapped to too many loci |	0.02%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	61907
       % of reads unmapped: too many mismatches |	0.06%
            Number of reads unmapped: too short |	719139
                 % of reads unmapped: too short |	0.73%
                Number of reads unmapped: other |	92108
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	1044215
                            % of chimeric reads |	1.06%