File Info
- Filename
- EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/QC/picard/EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Size
- 6.0 KB
- Workflow Run
- dev_rna_exp0011_5f1fa793
- Published
- Mar 03, 2026 4:57 PM
Content
View in new tab## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics --Histogram_FILE EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1_collectinsertsize.pdf --INPUT EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false ## htsjdk.samtools.metrics.StringHeader # Started on: Wed Mar 04 00:51:52 GMT 2026 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 112 86 37 7 1098109 122.187582 75.22143 94298059 FR 15 29 43 59 75 99 145 687 3385 8963 61171 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 7 1 8 1 9 2 10 2 11 2 12 24 13 17 14 501 15 1671 16 2916 17 2729 18 2840 19 2991 20 3332 21 4306 22 4476 23 3492 24 3383 25 4412 26 6776 27 8614 28 10290 29 14178 30 16295 31 20196 32 24564 33 26163 34 31001 35 37257 36 45914 37 54767 38 65263 39 78479 40 88546 41 104847 42 118449 43 128792 44 141992 45 156076 46 171748 47 191537 48 208937 49 224350 50 243225 51 263556 52 286410 53 304005 54 323895 55 353422 56 363730 57 378465 58 399826 59 424005 60 447848 61 477160 62 503189 63 525137 64 549141 65 578998 66 603333 67 621693 68 641921 69 655207 70 683313 71 699396 72 730618 73 757588 74 790156 75 809957 76 825389 77 836408 78 846875 79 856651 80 876284 81 890228 82 899620 83 908798 84 925325 85 937353 86 954397 87 946565 88 945954 89 949476 90 933789 91 932215 92 925354 93 937368 94 926893 95 922907 96 924392 97 911796 98 901182 99 880349 100 870315 101 848517 102 831274 103 817341 104 799601 105 784112 106 766650 107 759434 108 746307 109 735540 110 699259 111 684950 112 659347 113 642405 114 622133 115 610919 116 603404 117 581930 118 565222 119 557689 120 534232 121 517552 122 503076 123 484679 124 469024 125 454413 126 438897 127 427786 128 414894 129 404628 130 386557 131 378022 132 361390 133 349567 134 332195 135 321939 136 314153 137 305198 138 293141 139 285477 140 276052 141 273340 142 257701 143 251815 144 238350 145 233843 146 223698 147 214338 148 210807 149 207065 150 200235 151 194843 152 189272 153 181012 154 178358 155 171450 156 165077 157 161570 158 156701 159 152411 160 155825 161 145574 162 146228 163 141260 164 134748 165 133600 166 130721 167 126322 168 121743 169 122376 170 120682 171 117324 172 115655 173 116687 174 113764 175 110605 176 107558 177 110113 178 106392 179 105689 180 101347 181 103979 182 103406 183 98450 184 97868 185 95637 186 96291 187 95807 188 92846 189 89766 190 88361 191 87247 192 87239 193 86320 194 80177 195 83098 196 83091 197 82089 198 76605 199 78661 200 78707 201 75415 202 75490 203 75876 204 77130 205 77992 206 75229 207 71925 208 72231 209 72999 210 71725 211 68770 212 67579 213 66537 214 64598 215 68502 216 63809 217 63397 218 59793 219 60040 220 58373 221 56336 222 54822 223 55264 224 54683 225 53299 226 53561 227 52054 228 52648 229 50415 230 52716 231 50187 232 50145 233 51558 234 47918 235 48006 236 47829 237 45600 238 46573 239 44513 240 46759 241 44282 242 42044 243 42780 244 41242 245 40559 246 41491 247 39617 248 39037 249 38359 250 38841 251 38910 252 39580 253 38742 254 35624 255 37145 256 35164 257 35561 258 35936 259 36013 260 35115 261 34048 262 32583 263 33705 264 31325 265 31496 266 31682 267 30718 268 30460 269 28534 270 30014 271 28936 272 28871 273 28304 274 27834 275 26948 276 25871 277 26853 278 27431 279 26959 280 26873 281 26097 282 24716 283 25645 284 26714 285 26065 286 25344 287 25019 288 25027 289 25594 290 25908 291 24813 292 25698 293 27226 294 26293 295 26364 296 27656 297 25839 298 25932 299 25779 300 23391 301 26914 302 25425 303 27650 304 26480 305 25268 306 25058 307 24866 308 26852 309 25855 310 25353 311 25694 312 25802 313 26525 314 27632 315 26037 316 26207 317 25550 318 26659 319 26808 320 25808 321 26446 322 27137 323 26374 324 25220 325 26482 326 26267 327 23454 328 22528 329 24889 330 24361 331 24553 332 25918 333 23883 334 24484 335 25991 336 26389 337 27478 338 24987 339 25821 340 24712 341 26011 342 25829 343 25614 344 23516 345 23970 346 24312 347 23865 348 24287 349 24183 350 23045 351 23748 352 22059 353 23878 354 21988 355 21984 356 23150 357 22371 358 21661 359 21383 360 22020 361 23296 362 22033 363 21702 364 20954 365 21999 366 21921 367 22576 368 20856 369 20213 370 23263 371 21244 372 21546 373 22390 374 21003 375 20003 376 21451 377 24377 378 22818 379 22363 380 21589 381 20044 382 19298 383 20173 384 20806 385 19796 386 20266 387 19376 388 19890 389 18752 390 19903 391 18553 392 18526 393 18255 394 19755 395 18831 396 18052 397 18074 398 18199 399 18306 400 18478 401 17475 402 18490 403 17418 404 20701 405 19696 406 18572 407 17825 408 17286 409 18276 410 17620 411 17636 412 17484 413 17018 414 18152 415 17774 416 16691 417 18605 418 16376 419 18267 420 17055 421 17368 422 17000 423 17031 424 17668 425 17348 426 16530 427 17768 428 17032 429 17884 430 18116 431 16468 432 17045 433 15756 434 17244 435 16216 436 16687 437 15752 438 15771 439 16587 440 17111 441 17209 442 17875 443 17268 444 16658 445 17397 446 17367 447 18671 448 16283 449 17281 450 15963 451 16481 452 18550 453 17807 454 17750 455 16488 456 17130 457 17338 458 16018 459 16284 460 17037 461 18671 462 16573 463 17366 464 17229 465 16891 466 15870 467 18176 468 16740 469 16190 470 16221 471 16433 472 15217 473 16181 474 15073 475 14225 476 15008 477 15836 478 14307 479 15473 480 14786 481 14704 482 16098