File Info

Filename
HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/star_for_starfusion/HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1.Log.final.out
Size
2.0 KB
Published
Mar 03, 2026 4:58 PM
                                 Started job on |	Mar 03 23:59:33
                             Started mapping on |	Mar 04 00:21:59
                                    Finished on |	Mar 04 00:55:40
       Mapping speed, Million of reads per hour |	173.98

                          Number of input reads |	97667842
                      Average input read length |	224
                                    UNIQUE READS:
                   Uniquely mapped reads number |	91292858
                        Uniquely mapped reads % |	93.47%
                          Average mapped length |	224.16
                       Number of splices: Total |	66069636
            Number of splices: Annotated (sjdb) |	65924763
                       Number of splices: GT/AG |	65491118
                       Number of splices: GC/AG |	434717
                       Number of splices: AT/AC |	39800
               Number of splices: Non-canonical |	104001
                      Mismatch rate per base, % |	0.60%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.62
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	3605545
             % of reads mapped to multiple loci |	3.69%
        Number of reads mapped to too many loci |	102913
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	449856
       % of reads unmapped: too many mismatches |	0.46%
            Number of reads unmapped: too short |	1281999
                 % of reads unmapped: too short |	1.31%
                Number of reads unmapped: other |	206774
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	1382128
                            % of chimeric reads |	1.42%