File Info
- Filename
- OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/arriba/OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv
- Size
- 7.7 KB
- Workflow Run
- dev_rna_exp0011_5f1fa793
- Published
- Mar 03, 2026 4:58 PM
Content
View in new tab| #gene1 | gene2 | strand1(gene/fusion) | strand2(gene/fusion) | breakpoint1 | breakpoint2 | site1 | site2 | type | split_reads1 | split_reads2 | discordant_mates | coverage1 | coverage2 | confidence | reading_frame | tags | retained_protein_domains | closest_genomic_breakpoint1 | closest_genomic_breakpoint2 | gene_id1 | gene_id2 | transcript_id1 | transcript_id2 | direction1 | direction2 | filters | fusion_transcript | peptide_sequence | read_identifiers |
| NR4A1 | FP236383.3 | +/+ | +/+ | 12:52054411 | 21:8397822 | CDS | intron | translocation | 17 | 1 | 0 | 62133 | 1829 | medium | out-of-frame | . | . | . | . | ENSG00000123358 | ENSG00000280441 | ENST00000360284 | . | downstream | upstream | duplicates(9) | AGATGCCCTGTATCCAAGCCCAATATGGGACACCAGCACCGAGTCCGGGACCCCGTGACCACCTGGCAAGCGACCCCCTGACCCC|CGAGTGTTACAGCCCCCCCGGCAGC | MPCIQAQYGTPAPSPGPRDHLASDPLTp|ecysppg | LH00166:238:23LG7FLT4:5:1151:49888:6647,LH00166:238:23LG7FLT4:5:1186:36507:28646,LH00166:238:23LG7FLT4:5:1241:5094:14508,LH00166:238:23LG7FLT4:5:1303:8346:27595,LH00166:238:23LG7FLT4:5:1444:15125:10977,LH00166:238:23LG7FLT4:5:1480:13790:18866,LH00166:238:23LG7FLT4:5:2367:16751:2331,LH00166:238:23LG7FLT4:6:1250:13175:27133,LH00166:238:23LG7FLT4:6:1311:4438:18249,LH00166:238:23LG7FLT4:6:1486:5288:4503,LH00166:238:23LG7FLT4:6:2185:50576:5344,LH00166:238:23LG7FLT4:6:2240:52096:7446,LH00166:238:23LG7FLT4:6:2370:8516:23854,LH00166:238:23LG7FLT4:7:1241:19817:9491,LH00166:238:23LG7FLT4:7:1361:11614:9800,LH00166:238:23LG7FLT4:7:2237:3079:4069,LH00166:238:23LG7FLT4:7:2286:10045:21178,LH00166:238:23LG7FLT4:7:2363:18774:17492,LH00166:238:23LG7FLT4:7:2401:46482:12238,LH00166:238:23LG7FLT4:8:1385:33303:15447,LH00166:238:23LG7FLT4:8:1466:39039:26586,LH00166:238:23LG7FLT4:8:2210:49872:17605,LH00166:238:23LG7FLT4:8:2251:32535:6044,LH00166:238:23LG7FLT4:8:2267:1785:14158,LH00166:238:23LG7FLT4:8:2321:3039:26446,LH00166:238:23LG7FLT4:8:2336:45754:10753 |
| MAPK8IP1P1(3115),AC005829.2(11392) | WDR55 | ./+ | +/+ | 17:46248159 | 5:140671322 | intergenic | 3'UTR/splice-site | translocation | 4 | 3 | 0 | 94 | 1387 | medium | . | . | . | . | . | . | ENSG00000120314 | . | ENST00000504897 | downstream | upstream | duplicates(1) | ACTGGCATTAAAATATCT___AGACGTGGGAACAACGCAAGTCCCACTTACAACACTTAAGAACATTCTCATGATGACCGTTGAACTGGAAAAACT|t|CCCAGCAGACCACAGGAGGTTGGCCCCAGACTCACTGAGTGCCTGCAGCAGCCGTACAGAC | . | LH00166:238:23LG7FLT4:5:1339:3799:8679,LH00166:238:23LG7FLT4:6:2194:22608:18473,LH00166:238:23LG7FLT4:7:2135:3120:14508,LH00166:238:23LG7FLT4:5:2262:41450:3074,LH00166:238:23LG7FLT4:6:2253:32535:7249,LH00166:238:23LG7FLT4:6:2496:1704:13821,LH00166:238:23LG7FLT4:7:2333:6995:11243,LH00166:238:23LG7FLT4:8:1350:19437:26040 |
| ATN1 | FP236383.3 | +/+ | +/+ | 12:6936485 | 21:8399955 | CDS | intron | translocation | 28 | 0 | 0 | 10215 | 2334 | low | out-of-frame | . | Atrophin-1_family(16%)| | . | . | ENSG00000111676 | ENSG00000280441 | ENST00000356654 | . | downstream | upstream | duplicates(7),mismatches(2) | CTCTCTGCCTCCTGCTTCCTCTTCTGCTCCAGCGCCCCCCATGAGGTTTCCTTATTCATCCTCTAGTAGTAGCTCTGCAGCAGCCTCCTCTTCCAGTTCTTCCTCCTCTTCCTCTGCCTCCCCCTTCCCAGCTTCCCAGGCATTGCCC|CGCGCCCTCTCTCTCTCTCTCTCCC | SLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALP|ralslsls | LH00166:238:23LG7FLT4:5:1101:16921:2822,LH00166:238:23LG7FLT4:5:1335:13297:19132,LH00166:238:23LG7FLT4:5:1401:49330:26306,LH00166:238:23LG7FLT4:5:1416:40698:18417,LH00166:238:23LG7FLT4:5:2244:48262:25325,LH00166:238:23LG7FLT4:5:2282:47283:4657,LH00166:238:23LG7FLT4:5:2315:31928:11719,LH00166:238:23LG7FLT4:5:2338:2934:13205,LH00166:238:23LG7FLT4:5:2377:24922:16820,LH00166:238:23LG7FLT4:6:1104:48205:6955,LH00166:238:23LG7FLT4:6:1438:2925:24961,LH00166:238:23LG7FLT4:6:2166:15392:24330,LH00166:238:23LG7FLT4:6:2414:2731:11397,LH00166:238:23LG7FLT4:6:2460:4932:3326,LH00166:238:23LG7FLT4:7:1146:28134:14003,LH00166:238:23LG7FLT4:7:1255:47129:17030,LH00166:238:23LG7FLT4:7:1259:19825:3873,LH00166:238:23LG7FLT4:7:1410:4503:14101,LH00166:238:23LG7FLT4:7:1439:11679:23195,LH00166:238:23LG7FLT4:7:1479:9592:16133,LH00166:238:23LG7FLT4:7:2410:19728:18361,LH00166:238:23LG7FLT4:8:1128:14551:6955,LH00166:238:23LG7FLT4:8:1134:23652:3186,LH00166:238:23LG7FLT4:8:1222:6016:5568,LH00166:238:23LG7FLT4:8:1303:18288:2780,LH00166:238:23LG7FLT4:8:1313:35892:13569,LH00166:238:23LG7FLT4:8:1463:4171:12910,LH00166:238:23LG7FLT4:8:1476:35666:1687,LH00166:238:23LG7FLT4:8:2117:46951:6381,LH00166:238:23LG7FLT4:8:2130:50381:9688,LH00166:238:23LG7FLT4:8:2250:48310:10556,LH00166:238:23LG7FLT4:8:2258:50406:1406,LH00166:238:23LG7FLT4:8:2264:40261:9562,LH00166:238:23LG7FLT4:8:2314:23984:2527,LH00166:238:23LG7FLT4:8:2375:31839:27007,LH00166:238:23LG7FLT4:8:2393:5029:18319,LH00166:238:23LG7FLT4:8:2409:7302:12028 |
| CRTC2 | FP236383.3 | -/- | +/+ | 1:153951483 | 21:8399953 | CDS | intron | translocation | 26 | 0 | 0 | 4468 | 2334 | low | out-of-frame | . | Transducer_of_regulated_CREB_activity__N_terminus(100%),Transducer_of_regulated_CREB_activity_middle_domain(100%)| | . | . | ENSG00000160741 | ENSG00000280441 | ENST00000368633 | . | upstream | upstream | duplicates(14) | TCCAGGCTTCCCTGAGCAGTCCTCAGCCCCAGCTTCAGGGCTCCCACAGCCACCCCTCTCTGCCTGCCTCCTCCTTGGCCCGCCATGTACTGCCCACCACCTCCCTGGGCCACCCCTCACTCAGTGC|CCCGCGCCCTCTCTCTCTCTCTCTCCCC | QASLSSPQPQLQGSHSHPSLPASSLARHVLPTTSLGHPSLSa|prplslsl | LH00166:238:23LG7FLT4:5:1239:26079:8875,LH00166:238:23LG7FLT4:5:1334:1858:27483,LH00166:238:23LG7FLT4:5:2121:26548:12574,LH00166:238:23LG7FLT4:5:2341:6760:20645,LH00166:238:23LG7FLT4:6:1188:48351:20407,LH00166:238:23LG7FLT4:6:2115:45042:6717,LH00166:238:23LG7FLT4:6:2159:51813:15839,LH00166:238:23LG7FLT4:6:2288:46094:8595,LH00166:238:23LG7FLT4:6:2312:14696:24134,LH00166:238:23LG7FLT4:6:2334:32009:5862,LH00166:238:23LG7FLT4:6:2383:1324:11033,LH00166:238:23LG7FLT4:6:2415:2828:15657,LH00166:238:23LG7FLT4:6:2438:32316:9253,LH00166:238:23LG7FLT4:7:1124:32729:2794,LH00166:238:23LG7FLT4:7:1141:25666:7936,LH00166:238:23LG7FLT4:7:1451:11687:25704,LH00166:238:23LG7FLT4:7:1460:23005:10164,LH00166:238:23LG7FLT4:7:2143:50535:20407,LH00166:238:23LG7FLT4:7:2285:2480:21220,LH00166:238:23LG7FLT4:7:2286:42672:23462,LH00166:238:23LG7FLT4:7:2409:29080:27806,LH00166:238:23LG7FLT4:7:2415:43351:19762,LH00166:238:23LG7FLT4:8:1114:12164:2037,LH00166:238:23LG7FLT4:8:1176:27640:25648,LH00166:238:23LG7FLT4:8:1185:48804:21640,LH00166:238:23LG7FLT4:8:1291:9632:18389,LH00166:238:23LG7FLT4:8:1292:1938:11089,LH00166:238:23LG7FLT4:8:1309:14462:14676,LH00166:238:23LG7FLT4:8:1380:9470:9898,LH00166:238:23LG7FLT4:8:1397:50713:29039,LH00166:238:23LG7FLT4:8:2163:45487:2163,LH00166:238:23LG7FLT4:8:2201:47825:10640,LH00166:238:23LG7FLT4:8:2211:31265:6955,LH00166:238:23LG7FLT4:8:2219:31499:2457,LH00166:238:23LG7FLT4:8:2259:30852:4867,LH00166:238:23LG7FLT4:8:2277:26281:22649,LH00166:238:23LG7FLT4:8:2320:40859:15335,LH00166:238:23LG7FLT4:8:2355:25052:24807,LH00166:238:23LG7FLT4:8:2393:33109:6815,LH00166:238:23LG7FLT4:8:2467:46652:14382 |
| H2AC18 | H3C13(55),H4C14(18911) | -/- | ./- | 1:149842321 | 1:149813748 | CDS | intergenic | deletion/read-through | 4 | 0 | 0 | 1402 | 12 | low | out-of-frame | . | C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(100%)| | . | . | ENSG00000203812 | . | ENST00000369159 | . | upstream | downstream | low_entropy(2) | CCCTCGTCACCTCCAGCTGGCCATCCGCAACGACGAGGAACTGAACAAGCTGCTGGGCAAAGTCACCATCGCCCAGGGCGGCGTCTTGCCTAACATCCAGGCCGTACTGCTCCCTAAGAAGACGGAGAGTCACCACAAG|GCCCAATCAAGAGGAGACTATGTCTATAAATATGACTGCCTAGACCCTCT | PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK|aqsrgdyvykydcldp | LH00166:238:23LG7FLT4:5:2285:15481:9043,LH00166:238:23LG7FLT4:6:1209:44047:5750,LH00166:238:23LG7FLT4:6:1249:13693:4937,LH00166:238:23LG7FLT4:6:1326:22074:5862,LH00166:238:23LG7FLT4:8:1465:4972:22649,LH00166:238:23LG7FLT4:8:1468:2173:10907 |
| SLC7A14-AS1 | CLDN11 | +/+ | +/+ | 3:170460412 | 3:170432524 | exon/splice-site | CDS/splice-site | duplication | 2 | 1 | 0 | 11 | 3284 | low | . | . | |PMP-22/EMP/MP20/Claudin_family(25%) | . | . | ENSG00000285051 | ENSG00000013297 | ENST00000643719 | ENST00000064724 | downstream | upstream | . | CCTGTCATCAGATGATGTGACTACATGGAATGAGGACTATAGCTGCTCTCTTAAAAACCTGCAGCCCCCTCTCTCAGCCCAGACAGTTGAG|CTCTCTGCGCCCTTGTTGCCACCATCTGGTTCCCTGTGTGCGCCCACCGTGAG | . | LH00166:238:23LG7FLT4:8:2494:13200:6661,LH00166:238:23LG7FLT4:5:2196:40568:5442,LH00166:238:23LG7FLT4:8:2139:47995:21276 |
7 rows