File Info
- Filename
- ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/QC/picard/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Size
- 5.4 KB
- Workflow Run
- dev_rna_exp0011_5f1fa793
- Published
- Mar 03, 2026 4:59 PM
Content
View in new tab## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics --Histogram_FILE ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1_collectinsertsize.pdf --INPUT ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false ## htsjdk.samtools.metrics.StringHeader # Started on: Wed Mar 04 00:55:24 GMT 2026 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 107 88 32 8 597598 110.873678 58.218273 90469822 FR 13 25 37 49 65 83 113 369 3105 8741 64173 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 8 1 10 2 11 3 12 36 13 51 14 1870 15 6412 16 10550 17 10422 18 10627 19 10442 20 10307 21 11837 22 10913 23 7574 24 7390 25 8752 26 11589 27 13132 28 15684 29 20232 30 24723 31 29346 32 34087 33 35183 34 41952 35 49747 36 59349 37 70373 38 82619 39 93465 40 111606 41 125396 42 140852 43 156026 44 170723 45 186369 46 205615 47 223951 48 237289 49 253986 50 276883 51 296366 52 320462 53 343780 54 361294 55 385207 56 397784 57 419551 58 440983 59 470080 60 489599 61 508403 62 538109 63 560363 64 585070 65 605549 66 633423 67 654093 68 674959 69 693651 70 714035 71 730884 72 762869 73 783828 74 813122 75 840687 76 845993 77 871875 78 878605 79 887351 80 902374 81 903279 82 930862 83 939478 84 953394 85 964936 86 964227 87 971389 88 983676 89 980440 90 975356 91 971852 92 968664 93 944353 94 955710 95 942690 96 936699 97 941622 98 930481 99 915027 100 905008 101 890149 102 865607 103 838638 104 821895 105 813090 106 804452 107 785573 108 769060 109 753209 110 727679 111 714593 112 679406 113 665361 114 644555 115 631659 116 612606 117 598911 118 577822 119 569899 120 545170 121 530525 122 503678 123 488972 124 472467 125 457134 126 440720 127 430037 128 413754 129 404380 130 388098 131 375462 132 357362 133 345895 134 335819 135 322713 136 310816 137 295387 138 293555 139 282427 140 269719 141 259497 142 254714 143 241755 144 227865 145 225730 146 216856 147 203911 148 205378 149 197923 150 189583 151 184252 152 177029 153 172543 154 165195 155 164040 156 153204 157 151393 158 149133 159 145102 160 134780 161 130245 162 130079 163 124985 164 121485 165 116064 166 116520 167 110302 168 111794 169 104811 170 108262 171 102767 172 99493 173 96235 174 95243 175 93922 176 91898 177 85574 178 86042 179 80648 180 82364 181 80011 182 78411 183 78582 184 75264 185 76391 186 74655 187 75498 188 70511 189 66269 190 70477 191 67553 192 62111 193 65925 194 62508 195 65053 196 62645 197 58661 198 58444 199 58524 200 60659 201 55895 202 55217 203 53450 204 53948 205 55057 206 53382 207 52121 208 52157 209 50813 210 50766 211 49052 212 49628 213 49128 214 43267 215 47230 216 47576 217 45152 218 42730 219 41656 220 42191 221 42441 222 42088 223 41020 224 39094 225 38679 226 37622 227 36804 228 38248 229 37392 230 35915 231 36695 232 35923 233 35920 234 34906 235 33009 236 33341 237 31311 238 30542 239 31263 240 31132 241 31771 242 29906 243 29290 244 30972 245 29186 246 27843 247 28393 248 27420 249 27783 250 27688 251 27504 252 26542 253 25904 254 27907 255 26277 256 26459 257 27099 258 25085 259 25062 260 24935 261 24599 262 23719 263 23457 264 22748 265 21988 266 23369 267 23035 268 23832 269 22066 270 21917 271 21405 272 20657 273 22950 274 20289 275 19900 276 20583 277 19585 278 20047 279 19765 280 21742 281 20277 282 19437 283 20046 284 19815 285 19180 286 18858 287 18867 288 19784 289 19170 290 18841 291 18668 292 18978 293 17566 294 19655 295 17012 296 18042 297 19503 298 19701 299 19095 300 18240 301 18102 302 19517 303 18776 304 18152 305 17549 306 17465 307 18777 308 20277 309 18971 310 17918 311 17310 312 17608 313 17364 314 17130 315 17690 316 18012 317 18742 318 17156 319 19277 320 17091 321 17874 322 15689 323 16893 324 16703 325 17194 326 16515 327 16717 328 15924 329 18228 330 16327 331 17453 332 16000 333 16971 334 16867 335 16119 336 16655 337 16947 338 16212 339 15310 340 16319 341 14735 342 15264 343 15401 344 15374 345 15897 346 15436 347 16137 348 14228 349 13791 350 14908 351 15539 352 16280 353 15448 354 14101 355 15145 356 14889 357 15157 358 14731 359 13792 360 14205 361 14819 362 15270 363 13915 364 14302 365 14975 366 13041 367 14664 368 14497 369 15374 370 15014 371 11904 372 15691 373 13363 374 12419 375 13192 376 12685 377 13377 378 13652 379 13541 380 16015 381 13487 382 13729 383 13817 384 14478 385 14745 386 12916 387 13503 388 13183 389 12816 390 13101 391 12574 392 12449 393 13339 394 12680 395 11525 396 13639 397 13167 398 13548 399 12812 400 11873 401 13752 402 12671 403 11896 404 11778 405 12916 406 11520 407 12622 408 10810 409 11930 410 11277 411 12097 412 10967 413 11465 414 12193 415 11832 416 12556 417 11028 418 12423 419 11383 420 11398 421 11104 422 11406 423 12016 424 10934 425 11523 426 11021 427 11664