[W::hts_idx_load3] The index file is older than the data file: EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	61230645
Known Splicing Events:	60119964
Partial Novel Splicing Events:	316604
Novel Splicing Events:	690550
Filtered Splicing Events:	103527

Total splicing  Junctions:	202052
Known Splicing Junctions:	162156
Partial Novel Splicing Junctions:	14307
Novel Splicing Junctions:	25589

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Create BED file ...
Create Interact file ...