Processes

COPY_INPUT_TO_OUTDIR
1
RNAFUSION:CAT_FASTQ
RNAFUSION:SEQTK_SAMPLE
46 2 2
RNAFUSION:FASTQC
46
TRIM_WORKFLOW:FASTP
46
TRIM_WORKFLOW:FASTQC_FOR_FASTP
46
RNAFUSION:KALLISTO_INDEX
1
RNAFUSION:KALLISTO_QUANT
46
RNAFUSION:KALLISTO_TO_TX2GENE_QC
46
RNAFUSION:KALLISTO_TO_MULTIQC
46
RNAFUSION:GTF2BED
1
ARRIBA_WORKFLOW:STAR_FOR_ARRIBA
46
ARRIBA_WORKFLOW:ARRIBA
44 2
ARRIBA_WORKFLOW:ARRIBA_FILTER_SAME_GENE
44
ARRIBA_WORKFLOW:SAMTOOLS_SORT_FOR_ARRIBA
44 2
ARRIBA_WORKFLOW:SAMTOOLS_VIEW_FOR_ARRIBA
41 3
ARRIBA_WORKFLOW:SAMTOOLS_INDEX_FOR_ARRIBA
41
STARFUSION_WORKFLOW:STAR_FOR_STARFUSION
25 21
STARFUSION_WORKFLOW:SAMTOOLS_INDEX_FOR_STARFUSION
25
STARFUSION_WORKFLOW:SAMTOOLS_VIEW_FOR_STARFUSION
25
STARFUSION_WORKFLOW:SAMTOOLS_INDEX_FOR_STARFUSION_CRAM
24 1
STARFUSION_WORKFLOW:STARFUSION
21 4
STARFUSION_WORKFLOW:STARFUSION_FILTER
21
FUSIONREPORT_WORKFLOW:FUSIONREPORT
21
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR
10 1 2 1
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV
10
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT
10
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION
9 1
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS
24 1
RNAFUSION:CANCER_INTRONS_TO_VCF
24
QC_WORKFLOW:GATK4_MARKDUPLICATES
22 3
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS
20 5
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS
24 1
BAM_RSEQC:RSEQC_BAMSTAT
23 2
BAM_RSEQC:RSEQC_INNERDISTANCE
25
BAM_RSEQC:RSEQC_INFEREXPERIMENT
25
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION
23 2
BAM_RSEQC:RSEQC_JUNCTIONSATURATION
22 3
BAM_RSEQC:RSEQC_READDISTRIBUTION
22 3
BAM_RSEQC:RSEQC_READDUPLICATION
22 3
QC_WORKFLOW:SEQTOOL_QC
21 1
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION
22
QC_WORKFLOW:SEQTOOL_TO_MULTIQC
21
QC_WORKFLOW:PRESEQ_LCEXTRAP
21 4
QC_WORKFLOW:PRESEQ_TO_MULTIQC
21
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE
23 2
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES
23
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION
23
RNAFUSION:CONTAMINATION_TO_MULTIQC
23
RNAFUSION:MULTIQC
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV