File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0012_exp0013/A23WKFTLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0012_exp0013-2cae617
- Published
- May 16, 2026 9:07 AM
Content
View in new tab| sample_id | TOTAL_READS | EXPECTED_DISTINCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | IS_CONTAMINATED | CONTAMINATION_PCT | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_13_A23WKFTLT4_1 | 9999000000.0 | 599780006.0 | 191.2 | 173.0 | 0.01 | 1.96 | 0.84 | 0.0 | 0.02 | 5.75 | 1.19 | 0.0 | 590547446.0 | 0.005263 | 0.401187 | 353627217.0 | 0.944558 | 0.97758 | 0.046654 | 0.02242 | 334021284.0 | 169842305.0 | 16498024.0 | 3895257.0 | 776.126939 | 307.0 | 0.721328 | 0.626265 | 0.976782 | 0.0 | Yes | 62.41 | 398 | 1140.108403 | 0.40331 | 0.0 | 97.5192 | 90.60505979659976 | 96.11 | 283782754.0 | 31.0233 | 0.975928 | 80924631069.0 | 590547446.0 | 0.543734 | 98.42457433333334 | 31.577037166666667 | |||||||||
| NTC_0001_0001_A23WKFTLT4_1 | 9999000000.0 | 1202.0 | 141.0 | 133.0 | 0.49 | 0.31 | 0.0 | 0.0 | 0.35 | 1.19 | 0.0 | 0.0 | 2660.0 | 0.50188 | 0.278196 | 1920.0 | 0.085417 | 0.303887 | 0.219271 | 0.696113 | 164.0 | 86.0 | 421.0 | 197.0 | 0.000231 | 0.0 | 0.0 | 0.0 | 0.953054 | 0.0 | Skipped | N/A | 80 | 122.323944 | 0.558491 | 0.0453 | 57.750299999999996 | 8.34371108343711 | 24.36 | 324.0 | 41.306799999999996 | 0.878879 | 262645.0 | 2660.0 | 0.694798 | 3.1181131898532377 | 50.0281333520889 |
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