File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0012_exp0013/A23WKFTLT4/nfcore_rnafusion__73d51683--20260607-225254/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0012_exp0013-73d51683
- Published
- Jun 08, 2026 6:52 AM
Content
View in new tab| sample_id | AFTER_FILTERING_Q30_RATE | CONTAMINATION_PCT | FRAC_ANTISENSE | FRAC_UNMAPPED | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | IS_CONTAMINATED | N_Q30 | PERCENT_DUPLICATION | PCT_MITO_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE | UNIQUE_READS_RSEQC | UNIQUELY_MAPPED_PERCENT | GC_BIAS | PCT_ADAPTER | PCT_DUPLICATION | PCT_HK_EST_COUNTS | PCT_HK_TPM | PCT_MALE_EST_COUNTS | PCT_MALE_TPM | PCT_RIBO_EST_COUNTS | RIBOSOMAL_CONTAMINATION | PCT_SURVIVING | PERCENT_GC | READS | MAPPED_READS | AVG_SEQUENCE_LENGTH | PERCENT_DUPLICATES | PERCENT_FAILS | TOTAL_SEQUENCES | FRAC_BASES_GT30X | FRAC_READS_OFF_TARGET | FRAC_READS_ON_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT100X | FRAC_PAIRS_OFF_TARGET | FRAC_PAIRS_ON_TARGET | PAIRS_OFF_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | READS_ON_TARGET | EXPECTED_DISTINCT | FRAC_DUPES | UNIQUE_READS | TOTAL_READS | AFTER_FILTERING_GC_CONTENT | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | FRAGMENT_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_ALIGNED | PROPER_PAIRS_PERCENT | PSEUDOALIGNED_READS |
| FFPE_HD789_01_RNA_13_A23WKFTLT4_1 | 0.976257 | 61.46 | 0.947 | 0.005283 | 190.3 | 172.0 | Yes | 0.977111 | 0.400584 | 0.008 | 0.017 | 4.005 | 572053443.0 | 96.11 | 0.0 | 31.746830666666664 | 30.6475 | 0.841 | 1.194 | 0.0 | 0.0 | 1.967 | 5.752 | 98.41295 | 590477700.0 | 283752121.0 | 0.721804 | 0.046602 | 0.944616 | 779.747058 | 309.0 | 0.626889 | 0.022407 | 0.977593 | 3910401.0 | 170605181.0 | 16552720.0 | 335519408.0 | 595408904.0 | 0.398468 | 355191479.0 | 9999000000.0 | 0.543652 | 80912189880.0 | 590477700.0 | 90.6096851465216 | |||||||||
| NTC_0001_0001_A23WKFTLT4_1 | 0.878879 | N/A | 0.4304 | 0.50188 | 141.0 | 133.0 | Skipped | 0.953054 | 0.558491 | 0.487 | 0.35 | 0.0 | 685.0 | 24.36 | 0.0 | 50.0281333520889 | 41.306799999999996 | 0.0 | 0.0 | 0.0 | 0.0 | 0.309 | 1.192 | 3.1181131898532377 | 2660.0 | 324.0 | 0.0 | 0.219271 | 0.085417 | 0.000231 | 0.0 | 0.0 | 0.696113 | 0.303887 | 197.0 | 86.0 | 421.0 | 164.0 | 1202.0 | 0.278196 | 1920.0 | 9999000000.0 | 0.694798 | 262645.0 | 2660.0 | 8.34371108343711 |
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