Runs
dev_rna_exp0..13-73d51683
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NFCORE_RNAFUSION:GENERATE_SAMPLE_TYPE_MAP
1
DEMULTIPLEX:BCLCONVERT
8
DEMULTIPLEX:FLOWCELL_QC
1
DEMULTIPLEX:AGGREGATE_DEMUX_STATS
1
DEMULTIPLEX:SAMPLESHEET_CHECK
1
DEMULTIPLEX:CAT_FASTQ
96
DEMULTIPLEX:SAMPLESHEET_FROM_MERGED
1
RNAFUSION:FASTQC
96
2
TRIM_WORKFLOW:FASTP
96
TRIM_WORKFLOW:FASTQC_FOR_FASTP
96
3
RNAFUSION:KALLISTO_INDEX
1
RNAFUSION:KALLISTO_QUANT
96
RNAFUSION:KALLISTO_TO_TX2GENE_QC
96
RNAFUSION:KALLISTO_TO_MULTIQC
96
RNAFUSION:GTF2BED
1
FASTQ_ALIGN_STAR:STAR_ALIGNMENT
96
3
FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT
96
RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM
96
RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM
96
ARRIBA_WORKFLOW:ARRIBA
96
ARRIBA_WORKFLOW:ARRIBA_FILTER
96
STARFUSION_WORKFLOW:STARFUSION
96
2
STARFUSION_WORKFLOW:STARFUSION_FILTER
96
FUSIONREPORT_WORKFLOW:FUSIONREPORT
96
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR
89
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV
89
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT
89
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION
89
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS
96
58
RNAFUSION:CANCER_INTRONS_TO_VCF
96
QC_WORKFLOW:GATK4_MARKDUPLICATES
96
3
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS
BAM_RSEQC:RSEQC_BAMSTAT
96
BAM_RSEQC:RSEQC_INNERDISTANCE
96
BAM_RSEQC:RSEQC_INFEREXPERIMENT
96
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION
96
2
BAM_RSEQC:RSEQC_JUNCTIONSATURATION
96
1
BAM_RSEQC:RSEQC_READDISTRIBUTION
96
3
BAM_RSEQC:RSEQC_READDUPLICATION
96
1
QC_WORKFLOW:SEQTOOL_QC
96
1
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION
96
QC_WORKFLOW:RSEQC_TO_MULTIQC
96
QC_WORKFLOW:SEQTOOL_TO_MULTIQC
96
QC_WORKFLOW:PRESEQ_LCEXTRAP
96
3
QC_WORKFLOW:PRESEQ_TO_MULTIQC
96
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE
95
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES
95
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION
95
RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS
1
RNAFUSION:CONTAMINATION_TO_MULTIQC
95
RNAFUSION:MULTIQC
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV
1
RNAFUSION:MULTIQC_EXTRACT_CONTROLS
1
RNAFUSION:RUN_LEVEL_INTERMEDIATE
1
RNAFUSION:RUN_LEVEL_METRICS
1