Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e3996a49f7eb33bbd0a971493313d2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/4a46979556701739f2068d9b8bbb33/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e3996a49f7eb33bbd0a971493313d2/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 221657566
unpaired = 4457316
MERGED PAIRED END READS = 221657566
MATES PROCESSED = 447772448
TOTAL READS     = 226114882
DISTINCT READS  = 3.65925e+07
DISTINCT COUNTS = 964
MAX COUNT       = 952236
COUNTS OF 1     = 7.48179e+06
MAX TERMS       = 100
OBSERVED COUNTS (952237)
1	7481789
2	4530256
3	3849534
4	3374032
5	2921117
6	2489160
7	2090119
8	1733257
9	1421477
10	1158122
11	941484
12	760583
13	616266
14	498266
15	404360
16	330326
17	270405
18	223401
19	184965
20	155208
21	130930
22	111703
23	95696
24	81801
25	71350
26	62328
27	54585
28	47901
29	42588
30	37623
31	33760
32	30051
33	27027
34	24325
35	22221
36	20130
37	18168
38	16515
39	15077
40	13552
41	12536
42	11560
43	10423
44	9672
45	8835
46	8127
47	7382
48	6883
49	6294
50	5649
51	5336
52	4896
53	4457
54	4236
55	3903
56	3715
57	3365
58	3249
59	3099
60	2837
61	2681
62	2540
63	2346
64	2246
65	2191
66	1991
67	1912
68	1851
69	1797
70	1612
71	1621
72	1533
73	1523
74	1387
75	1365
76	1311
77	1227
78	1108
79	1184
80	1101
81	997
82	1003
83	1014
84	933
85	924
86	857
87	856
88	759
89	699
90	751
91	691
92	705
93	675
94	680
95	627
96	569
97	575
98	589
99	554
100	542
101	509
102	493
103	470
104	460
105	484
106	482
107	436
108	411
109	411
110	404
111	367
112	388
113	369
114	353
115	344
116	351
117	299
118	283
119	296
120	279
121	286
122	286
123	276
124	269
125	261
126	268
127	263
128	246
129	225
130	248
131	201
132	244
133	238
134	190
135	209
136	220
137	183
138	178
139	198
140	200
141	177
142	186
143	175
144	193
145	178
146	170
147	174
148	140
149	164
150	157
151	153
152	141
153	143
154	140
155	138
156	135
157	131
158	123
159	130
160	122
161	127
162	110
163	113
164	118
165	126
166	114
167	113
168	82
169	114
170	103
171	103
172	85
173	106
174	116
175	82
176	94
177	98
178	84
179	82
180	81
181	83
182	77
183	90
184	82
185	82
186	99
187	78
188	72
189	76
190	64
191	72
192	71
193	68
194	64
195	60
196	61
197	77
198	72
199	54
200	70
201	51
202	66
203	56
204	69
205	63
206	67
207	64
208	46
209	54
210	50
211	41
212	52
213	48
214	56
215	52
216	38
217	59
218	50
219	63
220	59
221	37
222	37
223	60
224	34
225	51
226	35
227	49
228	47
229	44
230	48
231	28
232	45
233	47
234	37
235	24
236	25
237	37
238	47
239	41
240	41
241	45
242	21
243	25
244	34
245	31
246	41
247	27
248	27
249	27
250	42
251	34
252	31
253	31
254	19
255	32
256	37
257	22
258	25
259	25
260	27
261	33
262	34
263	21
264	33
265	23
266	29
267	40
268	23
269	16
270	26
271	29
272	20
273	21
274	17
275	27
276	25
277	25
278	30
279	24
280	27
281	23
282	20
283	27
284	18
285	25
286	20
287	16
288	19
289	19
290	27
291	20
292	32
293	15
294	24
295	21
296	23
297	15
298	19
299	20
300	16
301	16
302	20
303	14
304	17
305	12
306	11
307	12
308	20
309	18
310	23
311	24
312	18
313	18
314	18
315	12
316	14
317	20
318	19
319	13
320	11
321	13
322	18
323	12
324	13
325	7
326	11
327	11
328	11
329	16
330	11
331	20
332	13
333	11
334	10
335	13
336	16
337	9
338	12
339	12
340	9
341	6
342	15
343	9
344	10
345	10
346	15
347	11
348	9
349	12
350	10
351	11
352	9
353	12
354	9
355	8
356	11
357	8
358	13
359	9
360	17
361	13
362	12
363	17
364	9
365	11
366	7
367	5
368	9
369	13
370	13
371	9
372	9
373	8
374	8
375	6
376	10
377	4
378	8
379	7
380	5
381	4
382	12
383	9
384	9
385	11
386	11
387	11
388	7
389	6
390	6
391	6
392	10
393	5
394	8
395	9
396	5
397	6
398	13
399	5
400	7
401	5
402	6
403	5
404	5
405	6
406	5
407	9
408	10
409	4
410	4
411	5
412	4
413	7
414	7
415	8
416	3
417	2
418	13
419	7
420	8
421	5
422	5
423	3
424	5
425	8
426	7
427	4
428	4
429	7
430	8
431	10
432	8
433	6
434	3
435	12
436	6
437	4
438	4
439	5
440	6
441	7
442	8
443	9
444	9
445	4
446	1
447	3
448	4
449	4
450	3
451	2
452	5
453	3
454	4
455	3
456	6
457	7
458	1
459	4
460	5
461	4
462	4
463	7
464	6
465	4
466	10
467	2
468	5
469	4
470	3
471	1
472	8
473	4
474	12
475	4
476	8
477	4
478	5
479	4
480	1
481	2
482	2
483	3
484	2
485	6
486	3
487	2
488	4
489	5
490	4
491	8
492	4
493	1
494	1
495	3
496	5
497	1
498	4
499	5
500	3
501	5
502	3
503	3
504	2
506	5
507	5
508	4
509	3
510	2
511	1
512	2
513	1
514	3
515	2
516	1
517	3
518	3
519	4
520	3
521	3
522	4
523	3
524	1
525	2
526	3
527	1
528	1
529	1
530	2
531	6
532	1
533	2
534	1
535	4
536	6
537	7
538	1
539	3
540	2
541	5
542	5
543	3
544	5
545	2
546	4
547	3
548	3
550	2
551	1
552	4
553	2
554	2
555	6
556	3
557	1
558	2
559	2
560	2
561	8
562	2
563	4
564	1
565	4
566	1
567	3
568	1
569	3
570	1
572	1
573	2
574	4
575	2
576	1
577	3
578	2
579	3
581	2
583	4
584	2
585	2
586	1
587	6
588	1
589	1
590	1
591	1
592	3
593	2
594	3
595	3
596	3
598	1
599	2
600	3
601	2
602	1
603	2
604	6
605	1
606	5
607	3
608	2
609	1
610	2
611	4
612	2
613	1
614	1
616	5
617	2
618	1
619	4
620	2
622	3
623	2
624	1
625	3
626	2
627	1
628	2
629	3
630	1
631	4
632	4
633	2
634	1
635	1
637	1
638	4
639	6
640	2
641	2
642	1
644	1
645	3
646	1
647	1
648	2
650	1
651	2
652	1
653	1
654	1
655	1
657	2
658	1
660	1
662	1
663	2
664	2
665	4
666	1
669	3
670	3
671	2
674	1
675	2
676	2
677	1
678	1
679	2
680	1
681	1
682	3
684	1
686	3
687	1
688	2
689	1
690	1
691	1
692	3
693	2
695	3
700	1
703	2
704	1
705	1
706	1
707	4
708	2
709	3
712	1
714	1
715	2
716	2
717	1
719	2
720	1
721	3
722	2
723	3
725	2
726	1
727	1
729	1
730	1
731	1
737	1
738	1
739	2
740	3
742	1
743	1
746	2
747	2
749	3
754	2
757	1
758	3
761	1
762	1
763	1
764	1
765	1
766	1
767	1
771	3
773	1
775	1
776	2
778	2
781	2
782	1
784	2
786	1
787	3
788	1
790	1
795	2
797	1
798	1
799	2
801	2
804	1
805	1
806	4
807	1
811	1
812	1
813	2
816	1
817	1
819	2
821	1
822	1
823	1
826	1
827	3
828	1
829	1
835	1
841	1
842	1
846	1
847	3
848	1
849	1
852	1
853	1
854	1
855	1
863	2
865	1
866	1
871	2
875	1
876	1
877	1
878	1
884	1
885	2
887	2
890	1
891	1
892	1
903	1
904	1
906	2
914	2
915	2
916	1
924	1
925	2
926	1
927	1
928	1
929	1
932	1
933	2
935	2
940	2
943	1
946	1
947	1
951	1
952	1
956	1
957	1
973	1
974	1
976	1
980	2
983	2
985	2
987	1
990	3
997	2
1001	1
1002	1
1003	1
1012	1
1016	1
1028	1
1033	1
1038	1
1044	1
1045	1
1050	1
1058	1
1062	1
1063	1
1069	1
1072	1
1073	1
1083	1
1084	1
1091	1
1095	1
1107	1
1110	1
1113	1
1122	1
1127	1
1129	1
1132	1
1145	1
1150	1
1162	1
1167	1
1168	1
1171	1
1172	1
1178	1
1184	1
1186	1
1189	1
1194	1
1200	2
1204	1
1205	1
1210	1
1212	2
1218	1
1219	1
1224	2
1226	1
1230	1
1234	1
1235	1
1240	1
1241	1
1244	1
1248	1
1250	1
1256	1
1258	1
1259	1
1263	1
1269	1
1270	1
1290	1
1291	1
1294	1
1302	1
1316	1
1317	1
1326	1
1328	1
1333	1
1335	1
1336	1
1341	1
1344	2
1345	1
1353	1
1366	1
1372	2
1390	2
1394	1
1402	1
1427	1
1445	1
1456	2
1458	1
1466	1
1470	1
1485	1
1492	1
1502	1
1536	1
1559	1
1564	1
1569	1
1577	1
1590	1
1596	1
1599	1
1602	1
1607	1
1614	1
1618	1
1633	1
1643	1
1653	1
1656	1
1657	1
1658	1
1665	1
1667	1
1681	2
1749	1
1769	1
1775	1
1798	1
1808	1
1826	1
1865	1
1869	1
1881	1
1887	1
1888	1
1949	1
1969	1
2010	2
2026	1
2033	1
2088	1
2093	1
2109	1
2114	1
2195	1
2230	1
2256	1
2270	2
2319	1
2400	1
2417	1
2418	1
2574	1
2588	1
2756	1
2828	1
2859	1
2941	1
3166	1
3357	1
3627	1
4489	1
5783	1
9171	1
9709	1
26385	1
952236	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..___.._..__.._....._...____.._._........_...___.._._......_....._.___..
._.._..........__._._.__........._.._....._.........._.__._......._._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]