Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/89fb22de8f94be92b005bb24ba0edd/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/d657117ac6e5be94b4323d9e9ff4c5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/fb5814cff6051034a00d74cb649e6a/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/d657117ac6e5be94b4323d9e9ff4c5/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1