File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/da58afd6710759c103e6fa6d38193c/.command.log
Size
9.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/cad3b2ea8e860749a408d8fa6d789a/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/da58afd6710759c103e6fa6d38193c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/da58afd6710759c103e6fa6d38193c/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/68865e2688a7e222ccea464dfa5e11/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
LINC00993--LINC02636
starfusion
arriba
HECTD1--PRKD1
starfusion
arriba
IPMK--CACNB2
starfusion
arriba
KCNIP4--RPGRIP1
starfusion
arriba
DERL1--AC091096.1
starfusion
arriba
PIEZO2--KCNIP4
starfusion
arriba
DAAM1--DHRS4
starfusion
arriba
GUCY1B1--SH3D19
starfusion
arriba
ANXA7--VN1R54P
starfusion
arriba
PIEZO2--AC096719.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PIEZO2--SLC35F1
starfusion
STX16--NPEPL1
starfusion
arriba
CEP43--ERBB4
starfusion
AC060809.1--ERBB4
starfusion
AC138035.1--SEPTIN14
starfusion
FSIP1--AC013652.1
starfusion
arriba
CDV3--MT-RNR2
starfusion
NCOA2--KCNB2
starfusion
arriba
DERL1--AC022695.2
starfusion
PDXDC2P--NPIPB3
starfusion
TOGARAM1--NUBPL
starfusion
arriba
RAB11FIP1--TRAPPC9
starfusion
DHX15--PPARGC1A
starfusion
AL627309.5--SEPTIN14
starfusion
ERLIN2--AC068672.2
arriba
ERLIN2--AC068672.1
arriba
AC092807.3--DDAH1
arriba
STAM--AC069545.1
arriba
STAM--ZWINT
arriba
TVP23C--CDRT4
arriba
SLC20A2--TRAPPC9
arriba
XPNPEP1--AL590623.1
arriba
XPNPEP1--KSR1P1
arriba
FRMD5--PABPC4L
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
RMND1--AC090578.1
arriba

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Processing LINC00993--LINC02636:   0%|          | 0/40 [00:00<?, ?it/s]
Processing LINC00993--LINC02636:   2%|▎         | 1/40 [00:00<00:04,  9.25it/s]
Processing HECTD1--PRKD1:   2%|▎         | 1/40 [00:00<00:04,  9.25it/s]       
Processing HECTD1--PRKD1:   5%|▌         | 2/40 [00:00<00:04,  9.48it/s]
Processing IPMK--CACNB2:   5%|▌         | 2/40 [00:00<00:04,  9.48it/s] 
Processing IPMK--CACNB2:   8%|▊         | 3/40 [00:00<00:03,  9.56it/s]
Processing KCNIP4--RPGRIP1:   8%|▊         | 3/40 [00:00<00:03,  9.56it/s]
Processing KCNIP4--RPGRIP1:  10%|█         | 4/40 [00:00<00:03,  9.59it/s]
Processing DERL1--AC091096.1:  10%|█         | 4/40 [00:00<00:03,  9.59it/s]
Processing DERL1--AC091096.1:  12%|█▎        | 5/40 [00:00<00:03,  9.61it/s]
Processing PIEZO2--KCNIP4:  12%|█▎        | 5/40 [00:00<00:03,  9.61it/s]   
Processing PIEZO2--KCNIP4:  15%|█▌        | 6/40 [00:00<00:03,  9.63it/s]
Processing DAAM1--DHRS4:  15%|█▌        | 6/40 [00:00<00:03,  9.63it/s]  
Processing DAAM1--DHRS4:  18%|█▊        | 7/40 [00:00<00:03,  9.63it/s]
Processing GUCY1B1--SH3D19:  18%|█▊        | 7/40 [00:00<00:03,  9.63it/s]
Processing GUCY1B1--SH3D19:  20%|██        | 8/40 [00:00<00:03,  9.64it/s]
Processing ANXA7--VN1R54P:  20%|██        | 8/40 [00:00<00:03,  9.64it/s] 
Processing ANXA7--VN1R54P:  22%|██▎       | 9/40 [00:00<00:03,  9.64it/s]
Processing PIEZO2--AC096719.1:  22%|██▎       | 9/40 [00:00<00:03,  9.64it/s]
Processing PIEZO2--AC096719.1:  25%|██▌       | 10/40 [00:01<00:03,  9.64it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 10/40 [00:01<00:03,  9.64it/s]
Processing TLK2P1--AC110079.1:  28%|██▊       | 11/40 [00:01<00:03,  9.65it/s]
Processing TLK2--AC240565.1:  28%|██▊       | 11/40 [00:01<00:03,  9.65it/s]  
Processing TLK2--AC240565.1:  30%|███       | 12/40 [00:01<00:02,  9.65it/s]
Processing PIEZO2--SLC35F1:  30%|███       | 12/40 [00:01<00:02,  9.65it/s] 
Processing PIEZO2--SLC35F1:  32%|███▎      | 13/40 [00:01<00:02,  9.65it/s]
Processing STX16--NPEPL1:  32%|███▎      | 13/40 [00:01<00:02,  9.65it/s]  
Processing STX16--NPEPL1:  35%|███▌      | 14/40 [00:01<00:02,  9.65it/s]
Processing CEP43--ERBB4:  35%|███▌      | 14/40 [00:01<00:02,  9.65it/s] 
Processing CEP43--ERBB4:  38%|███▊      | 15/40 [00:01<00:02,  9.65it/s]
Processing AC060809.1--ERBB4:  38%|███▊      | 15/40 [00:01<00:02,  9.65it/s]
Processing AC060809.1--ERBB4:  40%|████      | 16/40 [00:01<00:02,  9.65it/s]
Processing AC138035.1--SEPTIN14:  40%|████      | 16/40 [00:01<00:02,  9.65it/s]
Processing AC138035.1--SEPTIN14:  42%|████▎     | 17/40 [00:01<00:02,  9.65it/s]
Processing FSIP1--AC013652.1:  42%|████▎     | 17/40 [00:01<00:02,  9.65it/s]   
Processing FSIP1--AC013652.1:  45%|████▌     | 18/40 [00:01<00:02,  9.65it/s]
Processing CDV3--MT-RNR2:  45%|████▌     | 18/40 [00:01<00:02,  9.65it/s]    
Processing CDV3--MT-RNR2:  48%|████▊     | 19/40 [00:01<00:02,  9.65it/s]
Processing NCOA2--KCNB2:  48%|████▊     | 19/40 [00:01<00:02,  9.65it/s] 
Processing NCOA2--KCNB2:  50%|█████     | 20/40 [00:02<00:02,  9.65it/s]
Processing DERL1--AC022695.2:  50%|█████     | 20/40 [00:02<00:02,  9.65it/s]
Processing DERL1--AC022695.2:  52%|█████▎    | 21/40 [00:02<00:01,  9.64it/s]
Processing PDXDC2P--NPIPB3:  52%|█████▎    | 21/40 [00:02<00:01,  9.64it/s]  
Processing PDXDC2P--NPIPB3:  55%|█████▌    | 22/40 [00:02<00:01,  9.65it/s]
Processing TOGARAM1--NUBPL:  55%|█████▌    | 22/40 [00:02<00:01,  9.65it/s]
Processing TOGARAM1--NUBPL:  57%|█████▊    | 23/40 [00:02<00:01,  9.65it/s]
Processing RAB11FIP1--TRAPPC9:  57%|█████▊    | 23/40 [00:02<00:01,  9.65it/s]
Processing RAB11FIP1--TRAPPC9:  60%|██████    | 24/40 [00:02<00:01,  9.65it/s]
Processing DHX15--PPARGC1A:  60%|██████    | 24/40 [00:02<00:01,  9.65it/s]   
Processing DHX15--PPARGC1A:  62%|██████▎   | 25/40 [00:02<00:01,  9.65it/s]
Processing AL627309.5--SEPTIN14:  62%|██████▎   | 25/40 [00:02<00:01,  9.65it/s]
Processing AL627309.5--SEPTIN14:  65%|██████▌   | 26/40 [00:02<00:01,  9.64it/s]
Processing ERLIN2--AC068672.2:  65%|██████▌   | 26/40 [00:02<00:01,  9.64it/s]  
Processing ERLIN2--AC068672.2:  68%|██████▊   | 27/40 [00:02<00:01,  9.65it/s]
Processing ERLIN2--AC068672.1:  68%|██████▊   | 27/40 [00:02<00:01,  9.65it/s]
Processing ERLIN2--AC068672.1:  70%|███████   | 28/40 [00:02<00:01,  9.65it/s]
Processing AC092807.3--DDAH1:  70%|███████   | 28/40 [00:02<00:01,  9.65it/s] 
Processing AC092807.3--DDAH1:  72%|███████▎  | 29/40 [00:03<00:01,  9.65it/s]
Processing STAM--AC069545.1:  72%|███████▎  | 29/40 [00:03<00:01,  9.65it/s] 
Processing STAM--AC069545.1:  75%|███████▌  | 30/40 [00:03<00:01,  9.65it/s]
Processing STAM--ZWINT:  75%|███████▌  | 30/40 [00:03<00:01,  9.65it/s]     
Processing STAM--ZWINT:  78%|███████▊  | 31/40 [00:03<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  78%|███████▊  | 31/40 [00:03<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  80%|████████  | 32/40 [00:03<00:00,  9.65it/s]
Processing SLC20A2--TRAPPC9:  80%|████████  | 32/40 [00:03<00:00,  9.65it/s]
Processing SLC20A2--TRAPPC9:  82%|████████▎ | 33/40 [00:03<00:00,  9.65it/s]
Processing XPNPEP1--AL590623.1:  82%|████████▎ | 33/40 [00:03<00:00,  9.65it/s]
Processing XPNPEP1--AL590623.1:  85%|████████▌ | 34/40 [00:03<00:00,  9.65it/s]
Processing XPNPEP1--KSR1P1:  85%|████████▌ | 34/40 [00:03<00:00,  9.65it/s]    
Processing XPNPEP1--KSR1P1:  88%|████████▊ | 35/40 [00:03<00:00,  9.65it/s]
Processing FRMD5--PABPC4L:  88%|████████▊ | 35/40 [00:03<00:00,  9.65it/s] 
Processing FRMD5--PABPC4L:  90%|█████████ | 36/40 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  90%|█████████ | 36/40 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  92%|█████████▎| 37/40 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  92%|█████████▎| 37/40 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  95%|█████████▌| 38/40 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  95%|█████████▌| 38/40 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  98%|█████████▊| 39/40 [00:04<00:00,  9.65it/s]
Processing RMND1--AC090578.1:  98%|█████████▊| 39/40 [00:04<00:00,  9.65it/s]
Processing RMND1--AC090578.1: 100%|██████████| 40/40 [00:04<00:00,  9.65it/s]
Processing RMND1--AC090578.1: 100%|██████████| 40/40 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory