File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/bc4ec7ea2273de719fccee2999c2ba/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/f02c6ebbd167f596c824243d3c4520/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/bc4ec7ea2273de719fccee2999c2ba/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/f94b801487db963e3fb718bcc3cf3e/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/bc4ec7ea2273de719fccee2999c2ba/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3/abundance.h5
Successfully converted BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3/abundance.h5 to BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3
  Mean Fragment Length: 127.4 bp
  Median Fragment Length: 120.0 bp
  pct_mito_est_counts: 0.006%
  pct_ribo_est_counts: 1.971%
  pct_hk_est_counts: 0.681%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.01%
  pct_ribo_tpm: 5.162%
  pct_hk_tpm: 0.953%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.2%