Done.
-parsing GTF file: /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.wrwpEnYaAa/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1_1.fastp.fastq.gz /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.star.sortedByCoord.out.bam
11:53:57 : INFO : Done.
-parsing GTF file: /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.gtf
-parsing /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.star.cSorted.dupsMarked.bam

[10000]   
[20000]   
[30000]   
[40000]   
[50000]   
[60000]   
[70000]   
[80000]   
[90000]   
[100000]   
[110000]   
[120000]   
[130000]   
[140000]   
[150000]   
[160000]   
[170000]   
[180000]   
[190000]   
[200000]   
[210000]   
[220000]   
[230000]   
[240000]   
[250000]   
[260000]   
[270000]   
[280000]   
[290000]   
[300000]   
[310000]   
[320000]   
[330000]   
[340000]   
[350000]   
[360000]   
[370000]   
[380000]   
[390000]   
[400000]   
[410000]   
[420000]   
[430000]   
[440000]   
[450000]   
[460000]   
[470000]   
[480000]   
[490000]   
[500000]   
[510000]   
[520000]   
[530000]   
[540000]   
[550000]   
[560000]   
[570000]   
[580000]   
[590000]   
[600000]   
[610000]   
[620000]   
[630000]   
[640000]   
[650000]   
[660000]   
[670000]   
[680000]   
[690000]   
[700000]   
[710000]   
[720000]   
[730000]   
[740000]   
[750000]   
[760000]   
[770000]   
[780000]   
[790000]   
[800000]   
[810000]   
[820000]   
[830000]   
[840000]   
[850000]   
[860000]   
[870000]   
[880000]   
[890000]   
[900000]   
[910000]   
[920000]   
[930000]   
[940000]   
[950000]   
[960000]   
[970000]   
[980000]   
[990000]   
[1000000]   
[1010000]   
[1020000]   
[1030000]   
[1040000]   
[1050000]   
[1060000]   
[1070000]   
[1080000]   
[1090000]   
[1100000]   
[1110000]   
[1120000]   
[1130000]   
[1140000]   
[1150000]   
[1160000]   
[1170000]   
[1180000]   
[1190000]   
[1200000]   
[1210000]   
[1220000]   
[1230000]   
[1240000]   
[1250000]   
[1260000]   
[1270000]   
[1280000]   
[1290000]   
[1300000]   
[1310000]   
[1320000]   
[1330000]   
[1340000]   
[1350000]   
[1360000]   
[1370000]   
[1380000]   
[1390000]   
[1400000]   
[1410000]   
[1420000]   
[1430000]   
[1440000]   
[1450000]   
[1460000]   
[1470000]   
[1480000]   
[1490000]   
[1500000]   
[1510000]   
[1520000]   
[1530000]   
[1540000]   
[1550000]   
[1560000]   
[1570000]   
[1580000]   
[1590000]   
[1600000]   
[1610000]   
[1620000]   
[1630000]   
[1640000]   
[1650000]   
[1660000]   
[1670000]   
[1680000]   
[1690000]   
[1700000]   
[1710000]   
[1720000]   
[1730000]   
[1740000]   
[1750000]   
[1760000]   
[1770000]   
[1780000]   
[1790000]   
[1800000]   
[1810000]   
[1820000]   
[1830000]   
[1840000]   
[1850000]   
[1860000]   
[1870000]   
[1880000]   
[1890000]   
[1900000]   
[1910000]   
[1920000]   
[1930000]   
[1940000]   
[1950000]   
[1960000]   
[1970000]   
[1980000]   
[1990000]   
[2000000]   
[2010000]   
[2020000]   
[2030000]   
[2040000]   
[2050000]   
[2060000]   
[2070000]   
[2080000]   
[2090000]   
[2100000]   
[2110000]   
[2120000]   
[2130000]   
[2140000]   
[2150000]   
[2160000]   
[2170000]   
[2180000]   
[2190000]   
[2200000]   
[2210000]   
[2220000]   
[2230000]   
[2240000]   
[2250000]   
[2260000]   
[2270000]   
[2280000]   
[2290000]   
[2300000]   
[2310000]   
[2320000]   
[2330000]   
[2340000]   
[2350000]   
[2360000]   
[2370000]   
[2380000]   
[2390000]   
[2400000]   
[2410000]   
[2420000]   
[2430000]   
[2440000]   
[2450000]   
[2460000]   
[2470000]   
[2480000]   
[2490000]   
[2500000]   
[2510000]   
[2520000]   
[2530000]   
[2540000]   
[2550000]   
[2560000]   
[2570000]   
[2580000]   
[2590000]   
[2600000]   
[2610000]   
[2620000]   
[2630000]   
[2640000]   
[2650000]   
[2660000]   
[2670000]   
[2680000]   
[2690000]   
[2700000]   
[2710000]   
[2720000]   
[2730000]   
[2740000]   
[2750000]   
[2760000]   
[2770000]   
[2780000]   
[2790000]   -done parsing /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num_hits: 7 != num_counted_on_fusion_contigs 5 ' => 5,
          'num_hits: 6 != num_counted_on_fusion_contigs 5 ' => 295,
          'seq-similar region overlap' => 9,
          'num_hits: 8 != num_counted_on_fusion_contigs 7 ' => 203,
          ' ** passed ** ' => 4986,
          'num_hits: 10 != num_counted_on_fusion_contigs 4 ' => 16,
          'num_hits: 10 != num_counted_on_fusion_contigs 8 ' => 32,
          'num_hits: 10 != num_counted_on_fusion_contigs 1 ' => 3,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 38,
          'num_hits: 9 != num_counted_on_fusion_contigs 4 ' => 12,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 78,
          'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 102,
          'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 16,
          'num_hits: 7 != num_counted_on_fusion_contigs 6 ' => 606,
          'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 364,
          'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 18,
          'excessive soft clipping' => 19841,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 1698,
          'num_hits: 8 != num_counted_on_fusion_contigs 4 ' => 4,
          'num_hits: 9 != num_counted_on_fusion_contigs 1 ' => 4,
          'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 8,
          'num_hits: 10 != num_counted_on_fusion_contigs 6 ' => 6,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 214,
          'num_hits: 10 != num_counted_on_fusion_contigs 9 ' => 162,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 471,
          'num_hits: 10 != num_counted_on_fusion_contigs 5 ' => 5,
          'num_hits: 8 != num_counted_on_fusion_contigs 1 ' => 3,
          'num_hits: 7 != num_counted_on_fusion_contigs 2 ' => 4,
          'small anchor length' => 21,
          'num genes matched < 2' => 28,
          'per_id < 96' => 14114,
          'num_hits: 6 != num_counted_on_fusion_contigs 1 ' => 8,
          'num_hits: 9 != num_counted_on_fusion_contigs 2 ' => 2,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 9,
          'num_hits: 10 != num_counted_on_fusion_contigs 2 ' => 10,
          'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 19,
          'num_hits: 9 != num_counted_on_fusion_contigs 8 ' => 152,
          'num_hits: 9 != num_counted_on_fusion_contigs 7 ' => 28,
          'num_hits: 8 != num_counted_on_fusion_contigs 5 ' => 5,
          'num_hits: 9 != num_counted_on_fusion_contigs 3 ' => 6,
          'num_hits: 8 != num_counted_on_fusion_contigs 6 ' => 48,
          'num_hits: 8 != num_counted_on_fusion_contigs 2 ' => 26,
          'num_hits: 7 != num_counted_on_fusion_contigs 1 ' => 33,
          'low complexity anchor region' => 20,
          'num_hits: 10 != num_counted_on_fusion_contigs 3 ' => 33,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 2063,
          'exons hit < 2' => 7,
          'num_hits: 7 != num_counted_on_fusion_contigs 3 ' => 27
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   -fusion SPANNING read extraction for scaff: AC060809.1--ERBB4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

[1000]   -fusion SPANNING read extraction for scaff: AC138035.1--SEPTIN14

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: AL627309.5--SEPTIN14

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   -fusion SPANNING read extraction for scaff: ANXA7--VN1R54P

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   -fusion SPANNING read extraction for scaff: CDV3--MT-RNR2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   -fusion SPANNING read extraction for scaff: CEP43--ERBB4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   -fusion SPANNING read extraction for scaff: DAAM1--DHRS4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   -fusion SPANNING read extraction for scaff: DERL1--AC091096.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   -fusion SPANNING read extraction for scaff: DERL1--AC022695.2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   
[162000]   
[163000]   
[164000]   -fusion SPANNING read extraction for scaff: DHX15--PPARGC1A

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: ERLIN2--AC068672.2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: ERLIN2--AC068672.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   -fusion SPANNING read extraction for scaff: FRMD5--PABPC4L

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   -fusion SPANNING read extraction for scaff: FSIP1--AC013652.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   -fusion SPANNING read extraction for scaff: GUCY1B1--SH3D19

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   -fusion SPANNING read extraction for scaff: HECTD1--PRKD1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   -fusion SPANNING read extraction for scaff: IPMK--CACNB2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: KCNIP4--RPGRIP1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   -fusion SPANNING read extraction for scaff: LINC00993--LINC02636

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   
[162000]   
[163000]   
[164000]   
[165000]   
[166000]   
[167000]   
[168000]   
[169000]   
[170000]   
[171000]   
[172000]   
[173000]   
[174000]   
[175000]   
[176000]   
[177000]   
[178000]   
[179000]   
[180000]   
[181000]   
[182000]   
[183000]   
[184000]   
[185000]   
[186000]   
[187000]   
[188000]   
[189000]   
[190000]   
[191000]   
[192000]   
[193000]   
[194000]   
[195000]   
[196000]   
[197000]   
[198000]   
[199000]   
[200000]   
[201000]   
[202000]   
[203000]   
[204000]   
[205000]   
[206000]   
[207000]   
[208000]   
[209000]   
[210000]   
[211000]   
[212000]   
[213000]   
[214000]   
[215000]   
[216000]   
[217000]   
[218000]   
[219000]   
[220000]   
[221000]   
[222000]   
[223000]   
[224000]   
[225000]   
[226000]   
[227000]   
[228000]   
[229000]   
[230000]   
[231000]   
[232000]   
[233000]   
[234000]   
[235000]   
[236000]   
[237000]   
[238000]   
[239000]   
[240000]   
[241000]   
[242000]   
[243000]   
[244000]   
[245000]   
[246000]   
[247000]   
[248000]   
[249000]   
[250000]   
[251000]   
[252000]   
[253000]   
[254000]   
[255000]   
[256000]   
[257000]   
[258000]   
[259000]   
[260000]   
[261000]   
[262000]   
[263000]   
[264000]   
[265000]   
[266000]   
[267000]   
[268000]   
[269000]   
[270000]   
[271000]   
[272000]   
[273000]   
[274000]   
[275000]   
[276000]   
[277000]   
[278000]   
[279000]   
[280000]   
[281000]   
[282000]   
[283000]   
[284000]   
[285000]   
[286000]   
[287000]   
[288000]   
[289000]   
[290000]   
[291000]   
[292000]   
[293000]   
[294000]   
[295000]   
[296000]   
[297000]   
[298000]   
[299000]   
[300000]   
[301000]   
[302000]   
[303000]   -fusion SPANNING read extraction for scaff: NCOA2--KCNB2

[1000]   
[2000]   
[3000]   
[4000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   
[162000]   
[163000]   
[164000]   
[165000]   
[166000]   
[167000]   
[168000]   
[169000]   
[170000]   
[171000]   
[172000]   
[173000]   
[174000]   
[175000]   
[176000]   
[177000]   
[178000]   
[179000]   
[180000]   
[181000]   
[182000]   
[183000]   
[184000]   
[185000]   
[186000]   
[187000]   
[188000]   
[189000]   
[190000]   
[191000]   
[192000]   
[193000]   
[194000]   
[195000]   
[196000]   
[197000]   
[198000]   
[199000]   
[200000]   
[201000]   
[202000]   
[203000]   
[204000]   
[205000]   
[206000]   
[207000]   
[208000]   
[209000]   
[210000]   
[211000]   
[212000]   
[213000]   
[214000]   
[215000]   
[216000]   
[217000]   
[218000]   
[219000]   
[220000]   
[221000]   
[222000]   
[223000]   
[224000]   
[225000]   
[226000]   
[227000]   
[228000]   
[229000]   
[230000]   
[231000]   
[232000]   
[233000]   
[234000]   
[235000]   
[236000]   
[237000]   
[238000]   
[239000]   
[240000]   
[241000]   
[242000]   
[243000]   
[244000]   
[245000]   
[246000]   
[247000]   
[248000]   
[249000]   
[250000]   
[251000]   
[252000]   
[253000]   
[254000]   
[255000]   
[256000]   
[257000]   
[258000]   
[259000]   
[260000]   
[261000]   
[262000]   
[263000]   
[264000]   
[265000]   
[266000]   
[267000]   
[268000]   
[269000]   
[270000]   
[271000]   
[272000]   
[273000]   
[274000]   
[275000]   
[276000]   
[277000]   
[278000]   
[279000]   
[280000]   
[281000]   
[282000]   
[283000]   
[284000]   
[285000]   
[286000]   
[287000]   
[288000]   
[289000]   
[290000]   
[291000]   
[292000]   
[293000]   
[294000]   
[295000]   
[296000]   
[297000]   
[298000]   
[299000]   
[300000]   
[301000]   
[302000]   
[303000]   
[304000]   
[305000]   
[306000]   
[307000]   
[308000]   
[309000]   
[310000]   
[311000]   
[312000]   
[313000]   
[314000]   
[315000]   
[316000]   
[317000]   
[318000]   
[319000]   
[320000]   
[321000]   
[322000]   
[323000]   
[324000]   
[325000]   
[326000]   
[327000]   
[328000]   
[329000]   
[330000]   
[331000]   
[332000]   
[333000]   
[334000]   
[335000]   
[336000]   
[337000]   
[338000]   
[339000]   
[340000]   
[341000]   
[342000]   
[343000]   
[344000]   
[345000]   
[346000]   
[347000]   
[348000]   
[349000]   
[350000]   
[351000]   
[352000]   
[353000]   
[354000]   
[355000]   
[356000]   
[357000]   
[358000]   
[359000]   
[360000]   
[361000]   
[362000]   
[363000]   
[364000]   
[365000]   
[366000]   
[367000]   
[368000]   
[369000]   
[370000]   
[371000]   
[372000]   
[373000]   
[374000]   
[375000]   
[376000]   
[377000]   
[378000]   
[379000]   
[380000]   
[381000]   
[382000]   
[383000]   
[384000]   
[385000]   
[386000]   
[387000]   
[388000]   
[389000]   
[390000]   
[391000]   
[392000]   
[393000]   
[394000]   
[395000]   
[396000]   
[397000]   
[398000]   
[399000]   
[400000]   
[401000]   
[402000]   
[403000]   
[404000]   
[405000]   
[406000]   
[407000]   
[408000]   
[409000]   
[410000]   
[411000]   
[412000]   
[413000]   
[414000]   
[415000]   
[416000]   
[417000]   
[418000]   
[419000]   
[420000]   
[421000]   
[422000]   
[423000]   
[424000]   
[425000]   
[426000]   
[427000]   
[428000]   
[429000]   
[430000]   
[431000]   
[432000]   
[433000]   
[434000]   
[435000]   
[436000]   
[437000]   
[438000]   
[439000]   
[440000]   
[441000]   
[442000]   
[443000]   
[444000]   
[445000]   
[446000]   
[447000]   
[448000]   
[449000]   
[450000]   
[451000]   
[452000]   
[453000]   
[454000]   
[455000]   
[456000]   
[457000]   
[458000]   
[459000]   
[460000]   
[461000]   
[462000]   
[463000]   
[464000]   
[465000]   
[466000]   
[467000]   
[468000]   
[469000]   
[470000]   
[471000]   
[472000]   
[473000]   
[474000]   
[475000]   
[476000]   
[477000]   
[478000]   
[479000]   
[480000]   
[481000]   
[482000]   
[483000]   
[484000]   
[485000]   
[486000]   
[487000]   
[488000]   -fusion SPANNING read extraction for scaff: PDXDC2P--NPIPB3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   -fusion SPANNING read extraction for scaff: PIEZO2--KCNIP4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   -fusion SPANNING read extraction for scaff: PIEZO2--AC096719.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   -fusion SPANNING read extraction for scaff: PIEZO2--SLC35F1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   
[162000]   
[163000]   
[164000]   
[165000]   
[166000]   
[167000]   
[168000]   
[169000]   
[170000]   
[171000]   
[172000]   
[173000]   
[174000]   
[175000]   
[176000]   
[177000]   
[178000]   
[179000]   
[180000]   
[181000]   
[182000]   
[183000]   
[184000]   
[185000]   
[186000]   
[187000]   
[188000]   
[189000]   
[190000]   -fusion SPANNING read extraction for scaff: RAB11FIP1--TRAPPC9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   -fusion SPANNING read extraction for scaff: RMND1--AC090578.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   -fusion SPANNING read extraction for scaff: SLC20A2--TRAPPC9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   -fusion SPANNING read extraction for scaff: STAM--AC069545.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   -fusion SPANNING read extraction for scaff: STAM--ZWINT

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   -fusion SPANNING read extraction for scaff: STX16--NPEPL1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   -fusion SPANNING read extraction for scaff: TOGARAM1--NUBPL

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   -fusion SPANNING read extraction for scaff: XPNPEP1--AL590623.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   -fusion SPANNING read extraction for scaff: XPNPEP1--KSR1P1
-filtered reads reasons: $VAR1 = {
          'seq similar region alignment' => 2122,
          'lacks exon overlap' => 79255
        };
EM: Starting log likelihood: -8256.392321
EM: Round [1] log likelihood: -8249.837459
EM: Round [2] log likelihood: -8247.937959
EM: Round [3] log likelihood: -8247.140481
EM: Round [4] log likelihood: -8246.768654
EM: Round [5] log likelihood: -8246.571795
EM: Round [6] log likelihood: -8246.452763
EM: Round [7] log likelihood: -8246.372258
EM: Round [8] log likelihood: -8246.313364
EM: Round [9] log likelihood: -8246.268101
EM: Round [10] log likelihood: -8246.232238
EM: Round [11] log likelihood: -8246.203243
EM: Round [12] log likelihood: -8246.179442
EM: Round [13] log likelihood: -8246.159653
EM: Round [14] log likelihood: -8246.143005
EM: Round [15] log likelihood: -8246.128842
EM: Round [16] log likelihood: -8246.116664
EM: Round [17] log likelihood: -8246.106088
EM: Round [18] log likelihood: -8246.096814
EM: Round [19] log likelihood: -8246.088613
EM: Round [20] log likelihood: -8246.081303
EM: Round [21] log likelihood: -8246.074744
EM: Round [22] log likelihood: -8246.068822
EM: Round [23] log likelihood: -8246.063447
EM: Round [24] log likelihood: -8246.058547
EM: Round [25] log likelihood: -8246.054064
EM: Round [26] log likelihood: -8246.049949
EM: Round [27] log likelihood: -8246.046161
EM: Round [28] log likelihood: -8246.042668
EM: Round [29] log likelihood: -8246.039439
EM: Round [30] log likelihood: -8246.036451
EM: Round [31] log likelihood: -8246.033682
EM: Round [32] log likelihood: -8246.031114
EM: Round [33] log likelihood: -8246.028729
EM: Round [34] log likelihood: -8246.026513
EM: Round [35] log likelihood: -8246.024453
EM: Round [36] log likelihood: -8246.022537
EM: Round [37] log likelihood: -8246.020754
EM: Round [38] log likelihood: -8246.019094
EM: Round [39] log likelihood: -8246.017549
EM: Round [40] log likelihood: -8246.016109
EM: Round [41] log likelihood: -8246.014768
EM: Round [42] log likelihood: -8246.013518
EM: Round [43] log likelihood: -8246.012354
EM: Round [44] log likelihood: -8246.011269
EM: Round [45] log likelihood: -8246.010257
EM: Round [46] log likelihood: -8246.009313
EM: Round [47] log likelihood: -8246.008434
EM: Round [48] log likelihood: -8246.007614
EM: Round [49] log likelihood: -8246.006849
EM: Round [50] log likelihood: -8246.006136
EM: Round [51] log likelihood: -8246.005471
EM: Round [52] log likelihood: -8246.004851
EM: Round [53] log likelihood: -8246.004272
EM: Round [54] log likelihood: -8246.003732
EM: Round [55] log likelihood: -8246.003229
EM: Round [56] log likelihood: -8246.002759
EM: Round [57] log likelihood: -8246.002321
EM: Round [58] log likelihood: -8246.001912
EM: Round [59] log likelihood: -8246.001531
EM: Round [60] log likelihood: -8246.001175
EM: Round [61] log likelihood: -8246.000843
EM: Round [62] log likelihood: -8246.000533
EM: Round [63] log likelihood: -8246.000244
EM: Round [64] log likelihood: -8245.999974
EM: Round [65] log likelihood: -8245.999723
EM: Round [66] log likelihood: -8245.999488
EM: Round [67] log likelihood: -8245.999269
EM: Round [68] log likelihood: -8245.999064
EM: Round [69] log likelihood: -8245.998874
EM: Round [70] log likelihood: -8245.998696
EM: Round [71] log likelihood: -8245.998529
EM: Round [72] log likelihood: -8245.998374
EM: Round [73] log likelihood: -8245.998230
EM: Round [74] log likelihood: -8245.998095
EM: Round [75] log likelihood: -8245.997969
EM: Round [76] log likelihood: -8245.997851
EM: Round [77] log likelihood: -8245.997741
EM: Round [78] log likelihood: -8245.997639
EM: Round [79] log likelihood: -8245.997543
EM: Stopping iterations at round 79 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.consolidated.bam into /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.consolidated.bam.read_coords > /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.consolidated.bam.frag_coords > /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.wrwpEnYaAa/fi_workdir/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -7999.183293
EM: Round [1] log likelihood: -7998.826244
EM: Round [2] log likelihood: -7998.607910
EM: Round [3] log likelihood: -7998.443077
EM: Round [4] log likelihood: -7998.318206
EM: Round [5] log likelihood: -7998.223551
EM: Round [6] log likelihood: -7998.151811
EM: Round [7] log likelihood: -7998.097478
EM: Round [8] log likelihood: -7998.056370
EM: Round [9] log likelihood: -7998.025307
EM: Round [10] log likelihood: -7998.001865
EM: Round [11] log likelihood: -7997.984200
EM: Round [12] log likelihood: -7997.970905
EM: Round [13] log likelihood: -7997.960912
EM: Round [14] log likelihood: -7997.953410
EM: Round [15] log likelihood: -7997.947785
EM: Round [16] log likelihood: -7997.943572
EM: Round [17] log likelihood: -7997.940419
EM: Round [18] log likelihood: -7997.938061
EM: Round [19] log likelihood: -7997.936299
EM: Round [20] log likelihood: -7997.934984
EM: Round [21] log likelihood: -7997.934003
EM: Round [22] log likelihood: -7997.933271
EM: Round [23] log likelihood: -7997.932725
EM: Round [24] log likelihood: -7997.932318
EM: Round [25] log likelihood: -7997.932015
EM: Round [26] log likelihood: -7997.931790
EM: Round [27] log likelihood: -7997.931622
EM: Round [28] log likelihood: -7997.931497
EM: Round [29] log likelihood: -7997.931404
EM: Stopping iterations at round 29 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1_1.fastp.fastq.gz: 295807620
Warning - not locating file: /tmp/nxf.wrwpEnYaAa/BVT_FFPE_TRNA_bst_02_A23WKFTLT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000224222.2]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000253634.3]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000259543.1]
WARNING, no entry stored in dbm for [ENSG00000241860.7]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000232109.1]
WARNING, no entry stored in dbm for [ENSG00000232109.1]
WARNING, no entry stored in dbm for [ENSG00000255185.6]
WARNING, no entry stored in dbm for [ENSG00000255185.6]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000250039.4]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000210082.2]
WARNING, no entry stored in dbm for [ENSG00000253682.2]
ls: cannot access 'IGV_inputs': No such file or directory