Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.md.bam --METRICS_FILE BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:47:44.538 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:47:44 GMT 2026] MarkDuplicates --INPUT BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.md.bam --METRICS_FILE BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:47:44 GMT 2026] Executing as ?@nf-363315d0b46f11063838d47d8afce264-61745-lj2vq on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:47:44 MarkDuplicates Start of doWork freeMemory: 105494512; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:47:44 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:47:44 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,520,202
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 2627 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:6,825,195
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 5445 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:11,750,149
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 7742 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:16,393,298
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 9950 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:19,683,295
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 12333 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:22,086,761
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 15071 as yet unmatched pairs. 437 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:23,751,205
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 17124 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:27,264,947
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 19076 as yet unmatched pairs. 39 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:31,319,112
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 21522 as yet unmatched pairs. 58 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:33,024,449
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 24035 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:37,483,536
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 26220 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:40,290,981
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 28501 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:43,975,054
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 31054 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:48,239,357
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 33187 as yet unmatched pairs. 7 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,397
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 35259 as yet unmatched pairs. 29 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:77,728,547
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 37421 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:94,174,061
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 39526 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:103,108,030
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 41782 as yet unmatched pairs. 198 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:111,229,868
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 43836 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:114,723,946
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 46255 as yet unmatched pairs. 454 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,487
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 48970 as yet unmatched pairs. 843 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:119,965,461
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 52641 as yet unmatched pairs. 2400 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:121,373,979
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 51799 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:146,076,737
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 53185 as yet unmatched pairs. 125 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:147,613,021
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 53870 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:148,615,866
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 55667 as yet unmatched pairs. 852 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:149,840,825
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 56739 as yet unmatched pairs. 728 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:150,334,963
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 57801 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:150,967,833
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 60446 as yet unmatched pairs. 429 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:151,562,028
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 62560 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:153,949,154
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 64631 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:154,257,180
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 66853 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:154,992,740
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 68836 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:155,188,629
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 71218 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:155,330,464
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 73305 as yet unmatched pairs. 471 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 3s. Last read position: chr1:156,009,504
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 75234 as yet unmatched pairs. 314 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,317,166
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 77657 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:159,018,511
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 79657 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:161,000,316
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 82293 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,679
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 86322 as yet unmatched pairs. 2317 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:163,072,415
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 86054 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,313
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 89322 as yet unmatched pairs. 972 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:172,442,424
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 90655 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:180,031,465
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 92802 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:183,108,385
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 94863 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:186,339,688
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 97499 as yet unmatched pairs. 716 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:200,815,593
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 99295 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:202,965,479
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 101653 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:204,944,244
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 103559 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:208,040,031
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 105571 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:215,573,829
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 109041 as yet unmatched pairs. 1186 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:222,665,324
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 110283 as yet unmatched pairs. 258 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:225,514,693
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 112662 as yet unmatched pairs. 583 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:227,317,102
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 113906 as yet unmatched pairs. 46 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:229,432,820
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 116845 as yet unmatched pairs. 344 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:235,137,769
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 119087 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,294
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 121372 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:272,094
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 123551 as yet unmatched pairs. 123444 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:16,562,552
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 125528 as yet unmatched pairs. 125420 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:25,749,850
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 127871 as yet unmatched pairs. 127762 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:28,781,797
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 131229 as yet unmatched pairs. 131117 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,261
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 183506 as yet unmatched pairs. 130270 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 791951 as yet unmatched pairs. 116553 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 1109559 as yet unmatched pairs. 109364 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,419
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 1151816 as yet unmatched pairs. 108559 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,641
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 1171982 as yet unmatched pairs. 106283 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:53,901,381
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 1170020 as yet unmatched pairs. 104319 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:60,916,912
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 1168060 as yet unmatched pairs. 102359 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:69,245,290
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 1166087 as yet unmatched pairs. 100385 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:74,418,218
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 1163369 as yet unmatched pairs. 97666 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:86,161,996
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 1161256 as yet unmatched pairs. 95551 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:96,275,005
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 1159554 as yet unmatched pairs. 93849 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:99,102,408
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 1157064 as yet unmatched pairs. 91359 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:107,870,917
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 1155095 as yet unmatched pairs. 89384 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:109,903,367
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 1153807 as yet unmatched pairs. 88096 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:113,444,979
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 1152703 as yet unmatched pairs. 86992 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:129,980,606
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 1150586 as yet unmatched pairs. 84875 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:133,517,416
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 1148650 as yet unmatched pairs. 82936 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:151,567,396
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 1146691 as yet unmatched pairs. 80976 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:151,688,367
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1144985 as yet unmatched pairs. 79270 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:164,704,459
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 1142768 as yet unmatched pairs. 77052 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:174,427,647
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 1140743 as yet unmatched pairs. 75025 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:178,534,728
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 1139135 as yet unmatched pairs. 73417 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:178,557,071
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 1137338 as yet unmatched pairs. 71620 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:178,574,604
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 1134860 as yet unmatched pairs. 69142 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:178,595,685
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 1133059 as yet unmatched pairs. 67341 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:178,621,975
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1131044 as yet unmatched pairs. 65326 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:178,689,517
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 1129485 as yet unmatched pairs. 63767 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:178,731,437
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 1127578 as yet unmatched pairs. 61859 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:178,799,842
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 1125329 as yet unmatched pairs. 59610 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:188,985,238
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 1123733 as yet unmatched pairs. 58012 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:188,997,171
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 1121690 as yet unmatched pairs. 55969 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:189,006,957
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1118429 as yet unmatched pairs. 52703 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:189,061,613
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 1115635 as yet unmatched pairs. 49909 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:197,402,628
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 1112801 as yet unmatched pairs. 47072 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:203,440,038
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 1110354 as yet unmatched pairs. 44625 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,538
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 1116306 as yet unmatched pairs. 50575 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,906
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 1108869 as yet unmatched pairs. 43137 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,138
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 1111905 as yet unmatched pairs. 46172 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,304
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 1104374 as yet unmatched pairs. 38641 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,378,186
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 1105887 as yet unmatched pairs. 40152 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,355
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 1100908 as yet unmatched pairs. 35173 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,916
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 1103533 as yet unmatched pairs. 37796 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,703
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 1103254 as yet unmatched pairs. 37516 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,597
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 1096280 as yet unmatched pairs. 30542 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,186
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 1097429 as yet unmatched pairs. 31691 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,841
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 1091777 as yet unmatched pairs. 26038 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,458
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 1087836 as yet unmatched pairs. 22096 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,430,768
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 1086474 as yet unmatched pairs. 20734 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:215,947,054
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 1080338 as yet unmatched pairs. 14597 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:219,180,197
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 1078332 as yet unmatched pairs. 12591 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:226,797,695
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 1075856 as yet unmatched pairs. 10108 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:232,633,751
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 1073522 as yet unmatched pairs. 7772 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:237,357,349
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 1071353 as yet unmatched pairs. 5602 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:237,733,622
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 1069078 as yet unmatched pairs. 3326 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:241,264,574
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 1067142 as yet unmatched pairs. 1390 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr3:9,829,345
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 1064400 as yet unmatched pairs. 58745 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 3s. Last read position: chr3:13,397,424
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 1062074 as yet unmatched pairs. 56419 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:30,671,848
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 1059883 as yet unmatched pairs. 54199 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:38,306,111
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 1057633 as yet unmatched pairs. 51949 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:42,637,532
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 1055550 as yet unmatched pairs. 49865 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:47,123,997
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 1053241 as yet unmatched pairs. 47552 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:48,570,474
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 1051099 as yet unmatched pairs. 45410 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:49,130,760
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 1048389 as yet unmatched pairs. 42700 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:49,967,635
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 1045870 as yet unmatched pairs. 40180 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:52,248,174
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 1043608 as yet unmatched pairs. 37918 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:53,186,309
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1041086 as yet unmatched pairs. 35395 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:58,149,884
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 1039256 as yet unmatched pairs. 33565 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:72,967,669
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 1037048 as yet unmatched pairs. 31357 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:101,585,475
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 1035211 as yet unmatched pairs. 29514 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:113,469,153
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 1032677 as yet unmatched pairs. 26979 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:121,719,534
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 1030781 as yet unmatched pairs. 25082 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:125,576,282
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 1028428 as yet unmatched pairs. 22729 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:129,267,021
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 1026494 as yet unmatched pairs. 20789 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:132,503,219
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 1024262 as yet unmatched pairs. 18554 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:141,443,761
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 1022156 as yet unmatched pairs. 16447 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:150,583,221
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 1020106 as yet unmatched pairs. 14396 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:167,825,246
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 1017701 as yet unmatched pairs. 11991 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:179,362,397
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 1015681 as yet unmatched pairs. 9970 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:184,237,246
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 1013453 as yet unmatched pairs. 7741 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:184,577,996
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 1010938 as yet unmatched pairs. 5224 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:194,360,860
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 1008813 as yet unmatched pairs. 3099 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:197,004,923
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 1006718 as yet unmatched pairs. 1003 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr4:1,236,904
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 1004813 as yet unmatched pairs. 29745 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:2,938,793
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 1001845 as yet unmatched pairs. 26777 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:8,291,543
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 999548 as yet unmatched pairs. 24478 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:37,638,475
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 997288 as yet unmatched pairs. 22168 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:48,540,352
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 995017 as yet unmatched pairs. 19895 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:70,825,302
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 993231 as yet unmatched pairs. 18106 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:78,595,312
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 990931 as yet unmatched pairs. 15804 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:87,981,477
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 990527 as yet unmatched pairs. 15384 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:105,275,581
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 986857 as yet unmatched pairs. 11712 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:122,279,821
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 984955 as yet unmatched pairs. 9809 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:140,670,879
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 983287 as yet unmatched pairs. 8139 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:151,103,005
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 981371 as yet unmatched pairs. 6216 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:158,697,482
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 978415 as yet unmatched pairs. 3259 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:183,099,460
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 976257 as yet unmatched pairs. 1101 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr5:5,444,315
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 974146 as yet unmatched pairs. 65909 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:14,364,749
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 971845 as yet unmatched pairs. 63606 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:31,451,540
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 969293 as yet unmatched pairs. 61053 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:37,221,408
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 967245 as yet unmatched pairs. 59005 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:52,905,814
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 964863 as yet unmatched pairs. 56607 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:65,618,103
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 962700 as yet unmatched pairs. 54444 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:69,586,253
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 961074 as yet unmatched pairs. 52818 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:71,041,517
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 960304 as yet unmatched pairs. 52043 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:74,776,603
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 958407 as yet unmatched pairs. 50146 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 3s. Last read position: chr5:82,276,167
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 958125 as yet unmatched pairs. 49864 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr5:95,503,889
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 954315 as yet unmatched pairs. 46051 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:109,378,923
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 952404 as yet unmatched pairs. 44139 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:126,554,313
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 950210 as yet unmatched pairs. 41944 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:133,097,224
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 947958 as yet unmatched pairs. 39686 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:135,570,947
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 952404 as yet unmatched pairs. 44130 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,527
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 947061 as yet unmatched pairs. 38762 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:136,054,714
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 940796 as yet unmatched pairs. 32497 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:139,322,834
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 938458 as yet unmatched pairs. 30157 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:140,850,713
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 936000 as yet unmatched pairs. 27657 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:142,137,790
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 934527 as yet unmatched pairs. 26183 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:150,115,851
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 931699 as yet unmatched pairs. 23355 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,227
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 946295 as yet unmatched pairs. 37951 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,757
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 932589 as yet unmatched pairs. 24244 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,152
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 928715 as yet unmatched pairs. 20370 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:151,663,443
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 924446 as yet unmatched pairs. 16101 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:157,325,610
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 920192 as yet unmatched pairs. 11847 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,154
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 919773 as yet unmatched pairs. 11427 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:177,022,850
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 916031 as yet unmatched pairs. 7684 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 3s. Last read position: chr5:179,113,979
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 913546 as yet unmatched pairs. 5197 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,292
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 913359 as yet unmatched pairs. 5010 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr5:181,242,265
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 908869 as yet unmatched pairs. 520 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr6:7,301,318
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 906122 as yet unmatched pairs. 53722 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:17,421,657
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 904094 as yet unmatched pairs. 51692 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:26,217,160
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 901709 as yet unmatched pairs. 49306 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:29,945,082
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 901076 as yet unmatched pairs. 48673 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:30,899,299
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 897636 as yet unmatched pairs. 45233 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:31,630,787
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 895899 as yet unmatched pairs. 43494 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,862
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 893569 as yet unmatched pairs. 41162 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,590
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 892942 as yet unmatched pairs. 40535 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:31,982,317
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 890322 as yet unmatched pairs. 37914 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:32,026,702
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 889986 as yet unmatched pairs. 37578 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:32,519,393
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 888060 as yet unmatched pairs. 35652 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:33,085,175
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 884768 as yet unmatched pairs. 32360 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:33,435,188
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 882053 as yet unmatched pairs. 29645 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:36,596,834
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 879914 as yet unmatched pairs. 27504 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:43,019,053
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 877596 as yet unmatched pairs. 25185 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:44,254,864
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 875360 as yet unmatched pairs. 22948 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:56,615,959
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 873354 as yet unmatched pairs. 20941 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:75,133,301
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 871140 as yet unmatched pairs. 18725 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:83,188,641
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 868744 as yet unmatched pairs. 16329 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr6:108,064,203
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 866827 as yet unmatched pairs. 14410 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr6:118,815,584
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 864831 as yet unmatched pairs. 12412 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:137,200,955
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 862809 as yet unmatched pairs. 10389 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr6:151,350,218
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 860389 as yet unmatched pairs. 7968 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:152,122,429
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 857740 as yet unmatched pairs. 5318 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:159,232,108
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 855406 as yet unmatched pairs. 2983 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:169,237,686
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 853539 as yet unmatched pairs. 1115 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:2,647,364
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 850353 as yet unmatched pairs. 56650 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,503
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 847360 as yet unmatched pairs. 53656 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,262
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 846364 as yet unmatched pairs. 52660 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:10,938,134
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 843322 as yet unmatched pairs. 49615 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,327
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 841177 as yet unmatched pairs. 47468 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:39,988,039
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 838736 as yet unmatched pairs. 45027 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:44,115,764
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 836483 as yet unmatched pairs. 42773 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:56,060,336
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 834138 as yet unmatched pairs. 40427 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:73,055,928
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 832490 as yet unmatched pairs. 38774 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:74,796,869
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 830897 as yet unmatched pairs. 37180 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,948
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 830964 as yet unmatched pairs. 37247 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:77,779,084
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 827387 as yet unmatched pairs. 33656 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:92,083,277
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 825703 as yet unmatched pairs. 31972 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:94,404,705
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 825830 as yet unmatched pairs. 32098 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:94,412,647
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 823495 as yet unmatched pairs. 29758 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:94,425,186
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 820410 as yet unmatched pairs. 26672 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr7:98,233,842
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 815696 as yet unmatched pairs. 21956 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 3s. Last read position: chr7:100,107,305
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 813541 as yet unmatched pairs. 19801 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,868,689
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 811034 as yet unmatched pairs. 17294 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:102,558,445
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 809700 as yet unmatched pairs. 15960 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:105,565,555
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 808054 as yet unmatched pairs. 14314 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:122,092,835
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 806395 as yet unmatched pairs. 12651 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:128,856,780
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 804156 as yet unmatched pairs. 10411 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:138,538,679
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 802280 as yet unmatched pairs. 8512 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:142,071,050
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 799816 as yet unmatched pairs. 6047 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:149,003,980
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 798494 as yet unmatched pairs. 4724 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:151,467,179
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 796066 as yet unmatched pairs. 2296 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr8:2,896,829
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 793537 as yet unmatched pairs. 44382 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr8:17,964,650
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 791671 as yet unmatched pairs. 42516 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr8:25,184,929
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 789257 as yet unmatched pairs. 40102 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr8:38,128,841
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 786949 as yet unmatched pairs. 37793 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr8:41,609,441
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 785017 as yet unmatched pairs. 35861 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr8:47,862,531
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 782984 as yet unmatched pairs. 33826 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr8:61,202,489
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 780631 as yet unmatched pairs. 31471 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr8:70,162,759
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 779185 as yet unmatched pairs. 30020 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr8:86,435,473
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 777043 as yet unmatched pairs. 27872 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr8:98,044,992
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 775150 as yet unmatched pairs. 25979 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr8:100,948,622
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 772541 as yet unmatched pairs. 23369 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 66s. Last read position: chr8:115,414,107
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 771928 as yet unmatched pairs. 22755 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr8:116,847,521
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 768024 as yet unmatched pairs. 18851 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,440
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 765734 as yet unmatched pairs. 16561 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,021,393
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 763403 as yet unmatched pairs. 14229 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:143,817,335
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 760194 as yet unmatched pairs. 11020 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,678
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 759334 as yet unmatched pairs. 10159 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,337
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 758436 as yet unmatched pairs. 9259 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,391
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 757566 as yet unmatched pairs. 8389 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr8:143,924,063
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 755139 as yet unmatched pairs. 5961 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:144,180,199
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 751938 as yet unmatched pairs. 2758 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:144,841,391
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 749480 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr9:13,247,762
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 747254 as yet unmatched pairs. 37030 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr9:33,301,321
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 745247 as yet unmatched pairs. 35021 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:35,704,331
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 743000 as yet unmatched pairs. 32770 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr9:68,248,807
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 741204 as yet unmatched pairs. 30969 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr9:86,003,613
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 739362 as yet unmatched pairs. 29126 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr9:93,452,224
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 737023 as yet unmatched pairs. 26786 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:101,544,792
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 734530 as yet unmatched pairs. 24293 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr9:112,767,030
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 732257 as yet unmatched pairs. 22019 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:120,778,437
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 730019 as yet unmatched pairs. 19762 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:124,857,953
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 727901 as yet unmatched pairs. 17644 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:127,935,715
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 725575 as yet unmatched pairs. 15318 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:128,909,415
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 723130 as yet unmatched pairs. 12861 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:131,465,060
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 721148 as yet unmatched pairs. 10878 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:134,033,569
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 718860 as yet unmatched pairs. 8589 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:136,339,687
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 716160 as yet unmatched pairs. 5887 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:137,016,439
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 713399 as yet unmatched pairs. 3124 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:137,717,060
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 710583 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr10:7,562,981
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 708172 as yet unmatched pairs. 34016 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr10:17,704,507
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 706066 as yet unmatched pairs. 31908 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr10:28,590,747
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 704481 as yet unmatched pairs. 30322 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr10:32,901,615
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 703002 as yet unmatched pairs. 28842 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr10:43,111,443
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 700302 as yet unmatched pairs. 26141 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr10:45,700,049
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 697107 as yet unmatched pairs. 22946 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr10:50,344,051
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 695613 as yet unmatched pairs. 21450 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr10:70,140,121
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 693373 as yet unmatched pairs. 19209 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr10:73,913,647
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 691651 as yet unmatched pairs. 17487 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:79,850,215
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 689327 as yet unmatched pairs. 15163 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:89,306,598
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 687541 as yet unmatched pairs. 13351 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:95,869,858
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 685282 as yet unmatched pairs. 11092 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:101,006,680
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 683034 as yet unmatched pairs. 8842 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:103,615,611
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 680940 as yet unmatched pairs. 6747 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr10:117,284,887
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 678799 as yet unmatched pairs. 4604 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:123,155,658
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 676744 as yet unmatched pairs. 2548 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr10:133,399,555
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 674409 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr11:314,940
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 673481 as yet unmatched pairs. 73969 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:637,524
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 669693 as yet unmatched pairs. 70177 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr11:1,761,376
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 668182 as yet unmatched pairs. 68665 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr11:6,431,691
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 665002 as yet unmatched pairs. 65485 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:9,574,090
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 662842 as yet unmatched pairs. 63325 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr11:14,507,738
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 660702 as yet unmatched pairs. 61185 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr11:32,933,073
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 658862 as yet unmatched pairs. 59345 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr11:43,942,875
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 656573 as yet unmatched pairs. 57055 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:47,191,205
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 654422 as yet unmatched pairs. 54903 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr11:57,598,202
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 652251 as yet unmatched pairs. 52732 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:60,943,795
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 650048 as yet unmatched pairs. 50528 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,243,417
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 651123 as yet unmatched pairs. 51598 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,442
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 646370 as yet unmatched pairs. 46845 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,240
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 644622 as yet unmatched pairs. 45096 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,916
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 643064 as yet unmatched pairs. 43537 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,612
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 639904 as yet unmatched pairs. 40377 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:63,756,117
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 637638 as yet unmatched pairs. 38100 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 3s. Last read position: chr11:64,808,037
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 635261 as yet unmatched pairs. 35722 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:65,584,295
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 632761 as yet unmatched pairs. 33222 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr11:66,262,872
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 630300 as yet unmatched pairs. 30761 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:67,440,398
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 627717 as yet unmatched pairs. 28177 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:70,111,125
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 625441 as yet unmatched pairs. 25901 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,848
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 623184 as yet unmatched pairs. 23643 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:73,310,646
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 620622 as yet unmatched pairs. 21072 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:75,400,732
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 619051 as yet unmatched pairs. 19501 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:76,472,659
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 616247 as yet unmatched pairs. 16697 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:77,701,800
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 614173 as yet unmatched pairs. 14623 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:78,210,204
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 611895 as yet unmatched pairs. 12345 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:90,214,080
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 609809 as yet unmatched pairs. 10258 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:108,332,839
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 607587 as yet unmatched pairs. 8036 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:118,503,419
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 605496 as yet unmatched pairs. 5943 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:120,457,131
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 603619 as yet unmatched pairs. 4065 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr11:126,204,237
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 601307 as yet unmatched pairs. 1753 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr12:753,835
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 599239 as yet unmatched pairs. 77396 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr12:4,548,826
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 596953 as yet unmatched pairs. 75110 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr12:6,557,396
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 594671 as yet unmatched pairs. 72828 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr12:6,970,964
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 592379 as yet unmatched pairs. 70535 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:9,755,103
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 590168 as yet unmatched pairs. 68323 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:14,447,013
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 588469 as yet unmatched pairs. 66624 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr12:26,990,453
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 586117 as yet unmatched pairs. 64270 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:40,428,091
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 584751 as yet unmatched pairs. 62904 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr12:40,484,243
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 583354 as yet unmatched pairs. 61507 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr12:40,487,330
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 582805 as yet unmatched pairs. 60958 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:40,489,415
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 580652 as yet unmatched pairs. 58805 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr12:40,530,497
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 576060 as yet unmatched pairs. 54213 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:45,849,524
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 573878 as yet unmatched pairs. 52031 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:48,783,366
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 571575 as yet unmatched pairs. 49728 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,546
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 569850 as yet unmatched pairs. 48003 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr12:49,796,293
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 567976 as yet unmatched pairs. 46129 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr12:52,899,866
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 565863 as yet unmatched pairs. 44003 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr12:53,443,749
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 563342 as yet unmatched pairs. 41482 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:54,516,908
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 561239 as yet unmatched pairs. 39379 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:56,134,374
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 559119 as yet unmatched pairs. 37259 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:56,420,622
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 556890 as yet unmatched pairs. 35029 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,094,706
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 555009 as yet unmatched pairs. 33148 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:57,190,874
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 552822 as yet unmatched pairs. 30961 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:57,719,044
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 550260 as yet unmatched pairs. 28399 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:67,649,906
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 548230 as yet unmatched pairs. 26369 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:79,353,540
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 546157 as yet unmatched pairs. 24295 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:95,081,441
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 544127 as yet unmatched pairs. 22265 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:101,680,428
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 542363 as yet unmatched pairs. 20501 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 3s. Last read position: chr12:106,106,451
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 539842 as yet unmatched pairs. 17980 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:110,436,669
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 538251 as yet unmatched pairs. 16387 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:112,456,048
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 535880 as yet unmatched pairs. 14015 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:116,006,337
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 533309 as yet unmatched pairs. 11443 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:120,438,219
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 531944 as yet unmatched pairs. 10078 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:122,341,025
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 528460 as yet unmatched pairs. 6593 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:124,340,427
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 526277 as yet unmatched pairs. 4408 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:132,006,732
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 523975 as yet unmatched pairs. 2106 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr13:20,062,834
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 521862 as yet unmatched pairs. 13370 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr13:31,269,241
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 519466 as yet unmatched pairs. 10973 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr13:40,949,694
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 517598 as yet unmatched pairs. 9104 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr13:49,691,343
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 515319 as yet unmatched pairs. 6823 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr13:85,795,464
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 513309 as yet unmatched pairs. 4812 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr13:110,195,042
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 511323 as yet unmatched pairs. 2823 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr13:114,325,333
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 508520 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr14:21,524,397
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 506176 as yet unmatched pairs. 35939 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr14:23,419,577
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 503938 as yet unmatched pairs. 33699 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr14:24,302,039
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 501576 as yet unmatched pairs. 31337 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr14:34,810,943
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 499511 as yet unmatched pairs. 29272 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,738
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 497282 as yet unmatched pairs. 27041 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr14:55,010,351
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 495219 as yet unmatched pairs. 24977 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr14:60,975,751
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 492981 as yet unmatched pairs. 22739 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr14:65,733,278
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 491678 as yet unmatched pairs. 21435 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr14:70,373,003
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 488674 as yet unmatched pairs. 18431 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr14:74,764,104
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 486494 as yet unmatched pairs. 16250 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr14:81,108,370
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 484198 as yet unmatched pairs. 13953 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr14:92,809,359
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 482264 as yet unmatched pairs. 12019 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr14:95,204,026
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 479923 as yet unmatched pairs. 9678 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr14:100,298,853
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 477769 as yet unmatched pairs. 7518 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr14:102,497,706
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 475478 as yet unmatched pairs. 5227 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr14:104,886,537
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 473332 as yet unmatched pairs. 3081 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,519
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 472189 as yet unmatched pairs. 1938 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr15:25,371,321
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 469526 as yet unmatched pairs. 29514 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr15:34,228,447
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 467514 as yet unmatched pairs. 27502 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr15:40,290,801
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 465245 as yet unmatched pairs. 25233 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr15:41,972,254
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 462983 as yet unmatched pairs. 22969 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,021
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 462002 as yet unmatched pairs. 21988 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr15:48,487,078
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 458899 as yet unmatched pairs. 18884 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr15:56,102,210
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 456518 as yet unmatched pairs. 16503 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr15:63,042,925
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 454223 as yet unmatched pairs. 14207 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr15:66,435,047
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 451767 as yet unmatched pairs. 11751 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr15:72,250,881
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 449600 as yet unmatched pairs. 9584 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr15:75,362,731
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 446875 as yet unmatched pairs. 6859 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr15:82,810,106
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 444492 as yet unmatched pairs. 4476 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr15:90,448,503
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 442295 as yet unmatched pairs. 2279 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr16:58,974
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 440017 as yet unmatched pairs. 66618 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr16:665,716
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 437833 as yet unmatched pairs. 64432 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr16:1,320,228
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 434616 as yet unmatched pairs. 61215 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr16:1,961,220
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 431818 as yet unmatched pairs. 58417 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr16:2,116,866
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 429170 as yet unmatched pairs. 55769 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,716
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 426896 as yet unmatched pairs. 53494 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr16:2,973,081
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 424679 as yet unmatched pairs. 51277 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:4,343,209
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 422114 as yet unmatched pairs. 48710 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr16:8,905,252
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 419562 as yet unmatched pairs. 46158 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr16:14,234,145
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 417994 as yet unmatched pairs. 44590 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr16:14,922,327
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 416048 as yet unmatched pairs. 42644 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr16:15,133,365
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 415050 as yet unmatched pairs. 41646 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:16,318,663
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 413674 as yet unmatched pairs. 40270 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr16:16,362,801
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 413566 as yet unmatched pairs. 40162 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr16:18,349,109
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 413044 as yet unmatched pairs. 39640 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:18,393,461
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 411192 as yet unmatched pairs. 37788 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr16:18,879,571
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 409763 as yet unmatched pairs. 36359 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr16:21,406,603
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 408457 as yet unmatched pairs. 35052 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:21,843,713
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 407326 as yet unmatched pairs. 33921 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr16:22,523,897
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 406843 as yet unmatched pairs. 33438 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:24,818,666
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 405276 as yet unmatched pairs. 31871 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:28,698,998
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 402937 as yet unmatched pairs. 29532 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:29,398,347
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 402179 as yet unmatched pairs. 28774 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,843
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 400847 as yet unmatched pairs. 27442 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:30,084,839
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 398270 as yet unmatched pairs. 24865 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:30,374,848
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 396742 as yet unmatched pairs. 23336 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:30,768,202
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 394212 as yet unmatched pairs. 20806 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:31,191,437
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 392507 as yet unmatched pairs. 19101 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:52,655,680
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 389691 as yet unmatched pairs. 16284 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:57,451,191
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 387313 as yet unmatched pairs. 13906 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:67,539,727
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 384766 as yet unmatched pairs. 11358 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:69,718,191
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 382770 as yet unmatched pairs. 9362 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:74,305,541
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 380437 as yet unmatched pairs. 7029 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:85,086,647
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 378135 as yet unmatched pairs. 4727 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 3s. Last read position: chr16:88,738,591
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 375671 as yet unmatched pairs. 2261 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 3s. Last read position: chr17:1,361,273
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 373948 as yet unmatched pairs. 163289 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr17:3,658,108
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 370450 as yet unmatched pairs. 159791 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr17:5,020,601
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 368060 as yet unmatched pairs. 157401 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr17:7,466,470
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 365781 as yet unmatched pairs. 155122 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr17:8,144,944
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 363583 as yet unmatched pairs. 152923 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr17:15,704,229
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 361372 as yet unmatched pairs. 150712 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr17:18,252,520
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 359097 as yet unmatched pairs. 148436 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:28,621,418
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 357113 as yet unmatched pairs. 146452 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr17:29,618,816
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 354763 as yet unmatched pairs. 144102 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr17:32,360,680
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 352752 as yet unmatched pairs. 142091 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr17:36,334,294
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 350496 as yet unmatched pairs. 139833 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr17:38,257,029
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 348896 as yet unmatched pairs. 138233 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:39,201,260
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 347458 as yet unmatched pairs. 136795 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,828
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 348423 as yet unmatched pairs. 137760 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,355
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 345392 as yet unmatched pairs. 134729 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr17:39,726,823
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 342973 as yet unmatched pairs. 132310 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:40,342,710
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 338516 as yet unmatched pairs. 127853 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,885
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 338278 as yet unmatched pairs. 127615 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:41,898,702
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 332604 as yet unmatched pairs. 121941 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr17:42,562,850
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 329945 as yet unmatched pairs. 119282 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:43,517,165
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 327732 as yet unmatched pairs. 117069 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:44,750,849
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 325409 as yet unmatched pairs. 114746 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:46,549,785
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 323740 as yet unmatched pairs. 113077 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:48,058,473
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 321658 as yet unmatched pairs. 110995 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,486
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 329657 as yet unmatched pairs. 118994 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,009
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 323314 as yet unmatched pairs. 112651 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,792
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 321322 as yet unmatched pairs. 110659 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,065
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 326549 as yet unmatched pairs. 115886 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,885
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 339547 as yet unmatched pairs. 128884 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,109
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 332792 as yet unmatched pairs. 122129 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,620
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 325042 as yet unmatched pairs. 114379 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,950
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 322772 as yet unmatched pairs. 112109 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,396
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 314675 as yet unmatched pairs. 104012 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,523
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 322920 as yet unmatched pairs. 112257 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,009
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 309958 as yet unmatched pairs. 99295 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,352
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 314473 as yet unmatched pairs. 103810 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,906
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 307828 as yet unmatched pairs. 97165 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,843
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 306458 as yet unmatched pairs. 95794 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,649
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 293924 as yet unmatched pairs. 83260 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,996
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 298764 as yet unmatched pairs. 88100 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,004
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 296079 as yet unmatched pairs. 85415 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,368
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 293716 as yet unmatched pairs. 83052 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,602
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 294031 as yet unmatched pairs. 83367 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,051
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 288916 as yet unmatched pairs. 78251 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,464
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 280582 as yet unmatched pairs. 69916 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,942
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 278818 as yet unmatched pairs. 68152 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,188
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 300063 as yet unmatched pairs. 89397 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,517
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 282238 as yet unmatched pairs. 71571 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,046
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 288317 as yet unmatched pairs. 77650 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,758
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 278183 as yet unmatched pairs. 67516 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,462
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 265746 as yet unmatched pairs. 55079 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,325
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 255486 as yet unmatched pairs. 44819 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,885
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 251801 as yet unmatched pairs. 41134 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,863,578
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 244506 as yet unmatched pairs. 33839 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:59,647,517
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 242456 as yet unmatched pairs. 31788 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr17:60,181,638
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 239669 as yet unmatched pairs. 29001 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr17:63,420,707
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 237589 as yet unmatched pairs. 26921 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:64,522,821
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 235302 as yet unmatched pairs. 24634 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:68,127,519
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 233407 as yet unmatched pairs. 22739 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:72,536,481
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 230953 as yet unmatched pairs. 20285 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:75,339,035
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 228578 as yet unmatched pairs. 17910 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:76,101,287
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 226182 as yet unmatched pairs. 15514 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:78,855,661
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 224164 as yet unmatched pairs. 13496 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:80,290,596
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 221671 as yet unmatched pairs. 11003 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:80,377,788
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 219151 as yet unmatched pairs. 8483 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,657
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 216277 as yet unmatched pairs. 5609 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 127s. Last read position: chr17:82,081,213
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 213792 as yet unmatched pairs. 3124 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:82,830,684
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 211202 as yet unmatched pairs. 534 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr18:9,954,114
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 209386 as yet unmatched pairs. 9062 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr18:26,039,342
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 207090 as yet unmatched pairs. 6766 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr18:46,844,715
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 204772 as yet unmatched pairs. 4448 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr18:59,338,607
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 202772 as yet unmatched pairs. 2446 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr18:79,904,035
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 200634 as yet unmatched pairs. 308 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr19:1,251,593
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 198148 as yet unmatched pairs. 80593 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:2,271,820
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 195461 as yet unmatched pairs. 77904 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:4,546,261
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 192553 as yet unmatched pairs. 74996 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr19:6,686,779
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 190211 as yet unmatched pairs. 72653 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 2s. Last read position: chr19:8,466,325
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 187362 as yet unmatched pairs. 69804 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:10,333,331
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 184548 as yet unmatched pairs. 66990 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:11,362,649
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 181981 as yet unmatched pairs. 64423 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:12,940,072
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 179506 as yet unmatched pairs. 61947 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chr19:14,480,425
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 176605 as yet unmatched pairs. 59046 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:15,264,710
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 174312 as yet unmatched pairs. 56753 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:17,245,029
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 171709 as yet unmatched pairs. 54150 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:18,432,721
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 168852 as yet unmatched pairs. 51293 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:19,654,543
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 166255 as yet unmatched pairs. 48696 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:35,042,482
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 163967 as yet unmatched pairs. 46408 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:36,010,567
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 160869 as yet unmatched pairs. 43309 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:38,704,973
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 158821 as yet unmatched pairs. 41261 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:39,873,718
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 156180 as yet unmatched pairs. 38620 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:39,918,377
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 154510 as yet unmatched pairs. 36950 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:41,220,806
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 151708 as yet unmatched pairs. 34148 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:41,895,406
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 149530 as yet unmatched pairs. 31970 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:42,376,454
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 146927 as yet unmatched pairs. 29362 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 2s. Last read position: chr19:44,908,953
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 144324 as yet unmatched pairs. 26759 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr19:45,712,088
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 141306 as yet unmatched pairs. 23741 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:46,989,593
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 139281 as yet unmatched pairs. 21715 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,880
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 136680 as yet unmatched pairs. 19114 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,786
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 134211 as yet unmatched pairs. 16645 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:49,851,415
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 131266 as yet unmatched pairs. 13700 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:52,613,459
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 128755 as yet unmatched pairs. 11189 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:54,456,037
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 126628 as yet unmatched pairs. 9061 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:55,386,623
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 125262 as yet unmatched pairs. 7695 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:57,491,495
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 121357 as yet unmatched pairs. 3788 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:57,942,368
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 119409 as yet unmatched pairs. 1840 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr20:1,165,135
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 116842 as yet unmatched pairs. 29806 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr20:3,786,043
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 114477 as yet unmatched pairs. 27441 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr20:17,625,566
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 112226 as yet unmatched pairs. 25189 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr20:23,879,525
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 109885 as yet unmatched pairs. 22848 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr20:33,658,489
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 107974 as yet unmatched pairs. 20937 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr20:35,653,543
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 105504 as yet unmatched pairs. 18467 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr20:38,499,536
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 102842 as yet unmatched pairs. 15804 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr20:44,727,099
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 100851 as yet unmatched pairs. 13813 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr20:47,633,494
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 98204 as yet unmatched pairs. 11166 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr20:50,894,484
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 96090 as yet unmatched pairs. 9052 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,749
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 94134 as yet unmatched pairs. 7095 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr20:62,388,308
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 91031 as yet unmatched pairs. 3992 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr20:63,572,180
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 88513 as yet unmatched pairs. 1474 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,749
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 86644 as yet unmatched pairs. 15986 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,118
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 85765 as yet unmatched pairs. 15101 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr21:14,964,820
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 84083 as yet unmatched pairs. 13417 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr21:33,436,866
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 82251 as yet unmatched pairs. 11584 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr21:37,147,535
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 80070 as yet unmatched pairs. 9403 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr21:42,312,240
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 80104 as yet unmatched pairs. 9437 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr21:44,771,430
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 75476 as yet unmatched pairs. 4809 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr21:46,111,508
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 73797 as yet unmatched pairs. 3130 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr22:17,085,180
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 70611 as yet unmatched pairs. 32647 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr22:20,537,130
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 68417 as yet unmatched pairs. 30453 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr22:23,311,735
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 66615 as yet unmatched pairs. 28651 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr22:25,710,184
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 63516 as yet unmatched pairs. 25551 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr22:29,042,493
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 61235 as yet unmatched pairs. 23270 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr22:30,890,727
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 58654 as yet unmatched pairs. 20689 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr22:35,546,800
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 56192 as yet unmatched pairs. 18226 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr22:36,318,274
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 54384 as yet unmatched pairs. 16418 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr22:37,805,873
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 51801 as yet unmatched pairs. 13835 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,616
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 49258 as yet unmatched pairs. 11292 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr22:41,149,821
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 47098 as yet unmatched pairs. 9131 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr22:42,893,541
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 44873 as yet unmatched pairs. 6906 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr22:46,536,133
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 42374 as yet unmatched pairs. 4407 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr22:50,523,747
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 39763 as yet unmatched pairs. 1796 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chrX:3,317,977
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 36612 as yet unmatched pairs. 30466 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chrX:16,852,798
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 34886 as yet unmatched pairs. 28740 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chrX:30,855,544
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 32476 as yet unmatched pairs. 26325 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chrX:41,347,349
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 30446 as yet unmatched pairs. 24294 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chrX:48,600,379
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 27921 as yet unmatched pairs. 21769 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chrX:53,266,902
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 25723 as yet unmatched pairs. 19571 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chrX:56,284,417
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 23095 as yet unmatched pairs. 16943 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chrX:71,378,983
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 20938 as yet unmatched pairs. 14785 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chrX:77,684,001
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 19493 as yet unmatched pairs. 13340 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chrX:103,377,519
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 17057 as yet unmatched pairs. 10904 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chrX:118,758,054
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 15018 as yet unmatched pairs. 8865 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chrX:132,217,168
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 12727 as yet unmatched pairs. 6574 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chrX:153,773,306
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 10269 as yet unmatched pairs. 4116 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chrX:154,368,041
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 8201 as yet unmatched pairs. 2048 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,002
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 6012 as yet unmatched pairs. 1541 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,502
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 4473 as yet unmatched pairs. 2 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: KI270733.1:172,694
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 198 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 595722477 records. 0 pairs never matched.
INFO 2026-06-08 09:08:07 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141136; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:07 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:08:11 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:08:11 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder Large duplicate set. size = 2230
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,388
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,391
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder Large duplicate set. size = 1432
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,813
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,676
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,187
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,903
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,749
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:08:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,546
INFO 2026-06-08 09:08:27 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 09:08:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,045
INFO 2026-06-08 09:08:27 OpticalDuplicateFinder Large duplicate set. size = 1093
INFO 2026-06-08 09:08:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,059
INFO 2026-06-08 09:08:27 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 09:08:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,736
INFO 2026-06-08 09:08:28 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:08:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,477
INFO 2026-06-08 09:08:28 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:08:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,609
INFO 2026-06-08 09:08:37 OpticalDuplicateFinder Large duplicate set. size = 1274
INFO 2026-06-08 09:08:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,994
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,367
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder Large duplicate set. size = 1759
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,934
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,461
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder Large duplicate set. size = 1493
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,366
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder Large duplicate set. size = 2299
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,545
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,911
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,000
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,739
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder Large duplicate set. size = 1579
INFO 2026-06-08 09:08:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,593
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,091
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1399
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,083
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 2035
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,538
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,362
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,607
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,038
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1772
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,229
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,580
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,668
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,236
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,429
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder Large duplicate set. size = 1327
INFO 2026-06-08 09:09:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,254
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,009
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,943
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,720
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,708
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1947
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,576
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,311
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1681
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,838
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,065
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 2287
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,893
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,656
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,403
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,100
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,509
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,970
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1316
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,702
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,424
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,656
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1449
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,330
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,689
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,279
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1332
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,291
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1420
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,747
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 2031
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,354
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,496
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,409
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,639
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder Large duplicate set. size = 1296
INFO 2026-06-08 09:09:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,817
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,596
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,420
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,178
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1407
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,040
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,560
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,451
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1502
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,137
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1294
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,408
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1273
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,985
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1331
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,659
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1415
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,195
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1256
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,231
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1421
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,099
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,027
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 2335
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,932
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,813
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,553
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder Large duplicate set. size = 1246
INFO 2026-06-08 09:09:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,614
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1355
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,831
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,736
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,369
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,354
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1190
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,084
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,935
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,263
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,340
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1668
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,175
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,689
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,439
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1598
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,505
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,663
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1202
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,863
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,524
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1287
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,543
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,713
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1417
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,496
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1425
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,295
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,291
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,627
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,614
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1550
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,598
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder Large duplicate set. size = 1332
INFO 2026-06-08 09:09:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,722
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,304
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,005
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,013
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,380
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,949
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 2072
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,042
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,944
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,248
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1464
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,128
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,912
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1355
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,499
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,364
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,137
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,377
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,114
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1968
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,425
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1159
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,386
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1337
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,614
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,678
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,218
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,243
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,319
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,861
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1573
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,967
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1317
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,999
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 2287
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,332
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,425
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1747
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,801
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,580
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1381
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,408
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,200
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1654
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,256
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,524
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1860
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,979
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1714
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,561
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,829
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1616
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,082
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1235
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,339
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,791
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1326
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,289
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,696
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1430
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,096
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,196
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1239
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,663
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,094
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,848
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1178
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,500
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,327
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1337
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,294
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1648
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,564
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,928
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,673
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,282
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 2820
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,381
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,061
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,762
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,093
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,347
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,809
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,305
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1655
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,535
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,281
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,368
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1325
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,283
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1896
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,690
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1598
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,649
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1757
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,546
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1975
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,108
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1520
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,464
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1499
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,969
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,634
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,495
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,181
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,683
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,179
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 2486
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,901
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,749
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 4126
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,386
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,609
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,135
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,444
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1436
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,005
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,615
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,975
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 2343
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,298
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,472
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 2739
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,096
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,721
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 2037
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,692
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,178
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1355
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,511
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,954
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,140
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,795
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,631
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1359
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,606
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1300
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,363
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,888
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,153
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1974
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,058
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1415
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,980
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,988
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1748
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,995
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1595
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,204
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1504
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,182
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 2605
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,680
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,524
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,505
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1355
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,238
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1193
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,506
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1739
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,801
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,142
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,289
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,514
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,123
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,567
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,846
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1330
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,044
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,287
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 2102
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,228
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,445
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,524
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1303
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,067
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,512
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,310
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 2643
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,400
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,995
INFO 2026-06-08 09:09:52 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:09:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:10:41 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:10:51 MarkDuplicates After generateDuplicateIndexes freeMemory: 203865152; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:10:51 MarkDuplicates Marking 467244299 records as duplicates.
INFO 2026-06-08 09:10:51 MarkDuplicates Found 9548947 optical duplicate clusters.
INFO 2026-06-08 09:10:51 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:11:08 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:33,024,449
INFO 2026-06-08 09:11:24 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:114,723,946
INFO 2026-06-08 09:11:40 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:151,562,028
INFO 2026-06-08 09:11:57 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:161,542,679
INFO 2026-06-08 09:12:14 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 17s. Last read position: chr1:208,040,031
INFO 2026-06-08 09:12:34 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 19s. Last read position: chr2:25,749,850
INFO 2026-06-08 09:12:51 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 16s. Last read position: chr2:74,418,218
INFO 2026-06-08 09:13:07 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:15s. Time for last 10,000,000: 16s. Last read position: chr2:151,688,367
INFO 2026-06-08 09:13:23 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:32s. Time for last 10,000,000: 16s. Last read position: chr2:178,799,842
INFO 2026-06-08 09:13:39 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:48s. Time for last 10,000,000: 16s. Last read position: chr2:215,375,304
INFO 2026-06-08 09:13:56 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:04s. Time for last 10,000,000: 16s. Last read position: chr2:215,947,054
INFO 2026-06-08 09:14:12 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 16s. Last read position: chr3:38,306,111
INFO 2026-06-08 09:14:28 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:36s. Time for last 10,000,000: 16s. Last read position: chr3:101,585,475
INFO 2026-06-08 09:14:44 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 16s. Last read position: chr3:184,237,246
INFO 2026-06-08 09:15:00 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 15s. Last read position: chr4:78,595,312
INFO 2026-06-08 09:15:16 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:24s. Time for last 10,000,000: 16s. Last read position: chr5:31,451,540
INFO 2026-06-08 09:15:34 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:42s. Time for last 10,000,000: 18s. Last read position: chr5:126,554,313
INFO 2026-06-08 09:15:50 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 16s. Last read position: chr5:150,404,757
INFO 2026-06-08 09:16:06 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 15s. Last read position: chr6:17,421,657
INFO 2026-06-08 09:16:22 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:30s. Time for last 10,000,000: 15s. Last read position: chr6:33,085,175
INFO 2026-06-08 09:16:38 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:46s. Time for last 10,000,000: 16s. Last read position: chr6:137,200,955
INFO 2026-06-08 09:16:55 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:03s. Time for last 10,000,000: 16s. Last read position: chr7:39,988,039
INFO 2026-06-08 09:17:11 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:19s. Time for last 10,000,000: 16s. Last read position: chr7:94,425,186
INFO 2026-06-08 09:17:27 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:36s. Time for last 10,000,000: 16s. Last read position: chr7:149,003,980
INFO 2026-06-08 09:17:43 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 15s. Last read position: chr8:86,435,473
INFO 2026-06-08 09:17:59 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:07s. Time for last 10,000,000: 15s. Last read position: chr8:143,866,391
INFO 2026-06-08 09:18:16 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:24s. Time for last 10,000,000: 16s. Last read position: chr9:101,544,792
INFO 2026-06-08 09:18:32 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:40s. Time for last 10,000,000: 16s. Last read position: chr9:137,717,060
INFO 2026-06-08 09:18:48 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:56s. Time for last 10,000,000: 15s. Last read position: chr10:79,850,215
INFO 2026-06-08 09:19:04 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 15s. Last read position: chr11:1,761,376
INFO 2026-06-08 09:19:20 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:28s. Time for last 10,000,000: 16s. Last read position: chr11:62,518,442
INFO 2026-06-08 09:19:36 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 15s. Last read position: chr11:72,015,848
INFO 2026-06-08 09:19:52 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:00s. Time for last 10,000,000: 16s. Last read position: chr11:126,204,237
INFO 2026-06-08 09:20:08 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:16s. Time for last 10,000,000: 16s. Last read position: chr12:40,487,330
INFO 2026-06-08 09:20:24 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 16s. Last read position: chr12:56,134,374
INFO 2026-06-08 09:20:40 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:49s. Time for last 10,000,000: 16s. Last read position: chr12:110,436,669
INFO 2026-06-08 09:20:56 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:04s. Time for last 10,000,000: 15s. Last read position: chr13:49,691,343
INFO 2026-06-08 09:21:12 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:20s. Time for last 10,000,000: 15s. Last read position: chr14:60,975,751
INFO 2026-06-08 09:21:28 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 15s. Last read position: chr14:105,741,519
INFO 2026-06-08 09:21:44 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 16s. Last read position: chr15:72,250,881
INFO 2026-06-08 09:22:00 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 15s. Last read position: chr16:2,973,081
INFO 2026-06-08 09:22:16 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 16s. Last read position: chr16:18,879,571
INFO 2026-06-08 09:22:32 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:40s. Time for last 10,000,000: 16s. Last read position: chr16:30,768,202
INFO 2026-06-08 09:22:48 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 15s. Last read position: chr17:3,658,108
INFO 2026-06-08 09:23:04 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:12s. Time for last 10,000,000: 16s. Last read position: chr17:38,257,029
INFO 2026-06-08 09:23:20 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 16s. Last read position: chr17:44,750,849
INFO 2026-06-08 09:23:36 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:44s. Time for last 10,000,000: 15s. Last read position: chr17:50,188,950
INFO 2026-06-08 09:23:52 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 15s. Last read position: chr17:50,194,368
INFO 2026-06-08 09:24:08 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 16s. Last read position: chr17:50,199,325
INFO 2026-06-08 09:24:24 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 15s. Last read position: chr17:76,101,287
INFO 2026-06-08 09:24:41 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 16s. Last read position: chr18:59,338,607
INFO 2026-06-08 09:24:56 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 15s. Last read position: chr19:14,480,425
INFO 2026-06-08 09:25:12 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:20s. Time for last 10,000,000: 15s. Last read position: chr19:41,220,806
INFO 2026-06-08 09:25:28 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:36s. Time for last 10,000,000: 15s. Last read position: chr19:54,456,037
INFO 2026-06-08 09:25:45 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:54s. Time for last 10,000,000: 17s. Last read position: chr20:38,499,536
INFO 2026-06-08 09:26:01 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 15s. Last read position: chr21:33,436,866
INFO 2026-06-08 09:26:17 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:25s. Time for last 10,000,000: 16s. Last read position: chr22:30,890,727
INFO 2026-06-08 09:26:33 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 15s. Last read position: chrX:16,852,798
INFO 2026-06-08 09:26:53 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:01s. Time for last 10,000,000: 20s. Last read position: chrX:132,217,168
INFO 2026-06-08 09:27:12 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:27:12 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:27:12 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:27:12 MarkDuplicates Before output close freeMemory: 203841288; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:27:12 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:27:12 MarkDuplicates After output close freeMemory: 104072584; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:27:12 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 39.47 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory