File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/d61fd18b3cb1b5a402c442833d3c89/.command.log
Size
6.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/b7540818252cdaca4ca8c0b3cb02e5/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/d61fd18b3cb1b5a402c442833d3c89/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/d61fd18b3cb1b5a402c442833d3c89/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/2a291ee62a41a3eb79f66e1c72ebc9/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
NARS2--GAB2
starfusion
arriba
EXOC2--EPHA5
starfusion
arriba
RIC1--FMNL1
starfusion
arriba
ZSCAN22--WWC3
starfusion
arriba
C22orf39--MYO18B-AS1
starfusion
arriba
MSI2--CLTC
starfusion
arriba
AC092070.2--MAN2B1
starfusion
arriba
MAPK13--GGNBP1
starfusion
arriba
GUSBP13--NAIP
starfusion
TLK2P1--AC110079.1
starfusion
SHMT2--RACGAP1
starfusion
arriba
DOK7--MICB
arriba
BMP2K--BMP2K
arriba
SH3BGRL--AL356585.4(1782765)
arriba
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
HIRA--MYO18B-AS1
arriba
ZNF525--AC007786.2
arriba
ZNF525--AC007786.3
arriba
GTPBP2--AL008627.1
arriba
GTPBP2--MBOAT1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
AC010642.2--WWC3
arriba
NPHP3--ACAD11
arriba

  0%|          | 0/28 [00:00<?, ?it/s]
Processing NARS2--GAB2:   0%|          | 0/28 [00:00<?, ?it/s]
Processing NARS2--GAB2:   4%|▎         | 1/28 [00:00<00:02,  9.23it/s]
Processing EXOC2--EPHA5:   4%|▎         | 1/28 [00:00<00:02,  9.23it/s]
Processing EXOC2--EPHA5:   7%|▋         | 2/28 [00:00<00:02,  9.46it/s]
Processing RIC1--FMNL1:   7%|▋         | 2/28 [00:00<00:02,  9.46it/s] 
Processing RIC1--FMNL1:  11%|█         | 3/28 [00:00<00:02,  9.54it/s]
Processing ZSCAN22--WWC3:  11%|█         | 3/28 [00:00<00:02,  9.54it/s]
Processing ZSCAN22--WWC3:  14%|█▍        | 4/28 [00:00<00:02,  9.58it/s]
Processing C22orf39--MYO18B-AS1:  14%|█▍        | 4/28 [00:00<00:02,  9.58it/s]
Processing C22orf39--MYO18B-AS1:  18%|█▊        | 5/28 [00:00<00:02,  9.60it/s]
Processing MSI2--CLTC:  18%|█▊        | 5/28 [00:00<00:02,  9.60it/s]          
Processing MSI2--CLTC:  21%|██▏       | 6/28 [00:00<00:02,  9.61it/s]
Processing AC092070.2--MAN2B1:  21%|██▏       | 6/28 [00:00<00:02,  9.61it/s]
Processing AC092070.2--MAN2B1:  25%|██▌       | 7/28 [00:00<00:02,  9.62it/s]
Processing MAPK13--GGNBP1:  25%|██▌       | 7/28 [00:00<00:02,  9.62it/s]    
Processing MAPK13--GGNBP1:  29%|██▊       | 8/28 [00:00<00:02,  9.62it/s]
Processing GUSBP13--NAIP:  29%|██▊       | 8/28 [00:00<00:02,  9.62it/s] 
Processing GUSBP13--NAIP:  32%|███▏      | 9/28 [00:00<00:01,  9.62it/s]
Processing TLK2P1--AC110079.1:  32%|███▏      | 9/28 [00:00<00:01,  9.62it/s]
Processing TLK2P1--AC110079.1:  36%|███▌      | 10/28 [00:01<00:01,  9.62it/s]
Processing SHMT2--RACGAP1:  36%|███▌      | 10/28 [00:01<00:01,  9.62it/s]    
Processing SHMT2--RACGAP1:  39%|███▉      | 11/28 [00:01<00:01,  9.62it/s]
Processing DOK7--MICB:  39%|███▉      | 11/28 [00:01<00:01,  9.62it/s]    
Processing DOK7--MICB:  43%|████▎     | 12/28 [00:01<00:01,  9.63it/s]
Processing BMP2K--BMP2K:  43%|████▎     | 12/28 [00:01<00:01,  9.63it/s]
Processing BMP2K--BMP2K:  46%|████▋     | 13/28 [00:01<00:01,  9.63it/s]
Processing SH3BGRL--AL356585.4(1782765):  46%|████▋     | 13/28 [00:01<00:01,  9.63it/s]
Processing SH3BGRL--AL356585.4(1782765):  50%|█████     | 14/28 [00:01<00:01,  9.63it/s]
Processing TVP23C--CDRT4:  50%|█████     | 14/28 [00:01<00:01,  9.63it/s]               
Processing TVP23C--CDRT4:  54%|█████▎    | 15/28 [00:01<00:01,  9.63it/s]
Processing PCDHA4--PCDHAC2:  54%|█████▎    | 15/28 [00:01<00:01,  9.63it/s]
Processing PCDHA4--PCDHAC2:  57%|█████▋    | 16/28 [00:01<00:01,  9.63it/s]
Processing PCDHA4--PCDHAC1:  57%|█████▋    | 16/28 [00:01<00:01,  9.63it/s]
Processing PCDHA4--PCDHAC1:  61%|██████    | 17/28 [00:01<00:01,  9.63it/s]
Processing PCDHA4--PCDHA13:  61%|██████    | 17/28 [00:01<00:01,  9.63it/s]
Processing PCDHA4--PCDHA13:  64%|██████▍   | 18/28 [00:01<00:01,  9.64it/s]
Processing HIRA--MYO18B-AS1:  64%|██████▍   | 18/28 [00:01<00:01,  9.64it/s]
Processing HIRA--MYO18B-AS1:  68%|██████▊   | 19/28 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.2:  68%|██████▊   | 19/28 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.2:  71%|███████▏  | 20/28 [00:02<00:00,  9.64it/s]
Processing ZNF525--AC007786.3:  71%|███████▏  | 20/28 [00:02<00:00,  9.64it/s]
Processing ZNF525--AC007786.3:  75%|███████▌  | 21/28 [00:02<00:00,  9.64it/s]
Processing GTPBP2--AL008627.1:  75%|███████▌  | 21/28 [00:02<00:00,  9.64it/s]
Processing GTPBP2--AL008627.1:  79%|███████▊  | 22/28 [00:02<00:00,  9.63it/s]
Processing GTPBP2--MBOAT1:  79%|███████▊  | 22/28 [00:02<00:00,  9.63it/s]    
Processing GTPBP2--MBOAT1:  82%|████████▏ | 23/28 [00:02<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC2:  82%|████████▏ | 23/28 [00:02<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC2:  86%|████████▌ | 24/28 [00:02<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC1:  86%|████████▌ | 24/28 [00:02<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC1:  89%|████████▉ | 25/28 [00:02<00:00,  9.64it/s]
Processing PCDHA10--PCDHA13:  89%|████████▉ | 25/28 [00:02<00:00,  9.64it/s]
Processing PCDHA10--PCDHA13:  93%|█████████▎| 26/28 [00:02<00:00,  9.64it/s]
Processing AC010642.2--WWC3:  93%|█████████▎| 26/28 [00:02<00:00,  9.64it/s]
Processing AC010642.2--WWC3:  96%|█████████▋| 27/28 [00:02<00:00,  9.64it/s]
Processing NPHP3--ACAD11:  96%|█████████▋| 27/28 [00:02<00:00,  9.64it/s]   
Processing NPHP3--ACAD11: 100%|██████████| 28/28 [00:02<00:00,  9.64it/s]
Processing NPHP3--ACAD11: 100%|██████████| 28/28 [00:02<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory