-ctat genome lib [/tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.2KRvRuK8kC/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary -sample contains 172931109 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir -J /tmp/nxf.2KRvRuK8kC/BVT_FFPE_TRNA_stm_08_A23WKFTLT4_3.Chimeric.out.junction -O /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.2KRvRuK8kC/BVT_FFPE_TRNA_stm_08_A23WKFTLT4_3.Chimeric.out.junction -building interval tree based on /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=66666.67/min [20000], rate=75000.00/min [30000], rate=81818.18/min [40000], rate=85714.29/min [50000], rate=90909.09/min [60000], rate=92307.69/min [70000], rate=91304.35/min [80000], rate=84210.53/min [90000], rate=78260.87/min [100000], rate=75949.37/min [110000], rate=74157.30/min [120000], rate=72727.27/min [130000], rate=72897.20/min [140000], rate=73043.48/min [150000], rate=73770.49/min [160000], rate=73282.44/min [170000], rate=74452.55/min [180000], rate=75524.48/min [190000], rate=76510.07/min [200000], rate=76923.08/min [210000], rate=77777.78/min [220000], rate=78571.43/min [230000], rate=77966.10/min [240000], rate=78260.87/min [250000], rate=78947.37/min [260000], rate=80000.00/min [270000], rate=80597.01/min [280000], rate=78873.24/min [290000], rate=77333.33/min [300000], rate=76271.19/min [310000], rate=75303.64/min [320000], rate=74708.17/min [330000], rate=73605.95/min [340000], rate=72597.86/min [350000], rate=71917.81/min [360000], rate=71523.18/min [370000], rate=70700.64/min [380000], rate=69938.65/min [390000], rate=69230.77/min [400000], rate=68965.52/min [410000], rate=68523.68/min [420000], rate=68108.11/min [430000], rate=67716.54/min [440000], rate=67519.18/min [450000], rate=67500.00/min [460000], rate=67647.06/min [470000], rate=67625.90/min [480000], rate=67924.53/min [490000], rate=68213.46/min [500000], rate=68965.52/min [510000], rate=69387.76/min [520000], rate=69798.66/min [530000], rate=70353.98/min [540000], rate=70897.16/min [550000], rate=71428.57/min [560000], rate=71794.87/min [570000], rate=71101.87/min [580000], rate=70445.34/min [590000], rate=69960.47/min [600000], rate=69498.07/min [610000], rate=69056.60/min [620000], rate=68634.69/min [630000], rate=68478.26/min [640000], rate=68327.40/min [650000], rate=68301.23/min [660000], rate=68041.24/min [670000], rate=67905.41/min [680000], rate=68000.00/min [690000], rate=68092.11/min [700000], rate=68071.31/min [710000], rate=67942.58/min [720000], rate=68138.80/min [730000], rate=68118.20/min [740000], rate=68307.69/min [750000], rate=68078.67/min [760000], rate=67958.27/min [770000], rate=67941.18/min [780000], rate=68023.26/min [790000], rate=68103.45/min [800000], rate=68181.82/min [810000], rate=68450.70/min [820000], rate=68811.19/min [830000], rate=69262.87/min [840000], rate=69613.26/min [850000], rate=69767.44/min [860000], rate=70108.70/min [870000], rate=70350.40/min [880000], rate=70493.99/min [890000], rate=70728.48/min [900000], rate=71052.63/min [910000], rate=71372.55/min [920000], rate=71688.31/min [930000], rate=72093.02/min [940000], rate=72680.41/min [950000], rate=73076.92/min [960000], rate=73375.80/min [970000], rate=73577.75/min [980000], rate=73776.66/min [990000], rate=73697.27/min [1000000], rate=73529.41/min [1010000], rate=73454.55/min [1020000], rate=73381.29/min [1030000], rate=73309.61/min [1040000], rate=73325.50/min [1050000], rate=73426.57/min [1060000], rate=73611.11/min [1070000], rate=73708.38/min [1080000], rate=73972.60/min [1090000], rate=74149.66/min [1100000], rate=74324.32/min [1110000], rate=74580.07/min [1120000], rate=75083.80/min [1130000], rate=75501.11/min [1140000], rate=75915.65/min [1150000], rate=76327.43/min [1160000], rate=76651.98/min [1170000], rate=77142.86/min [1180000], rate=77461.71/min [1190000], rate=77862.60/min [1200000], rate=78260.87/min [1210000], rate=78656.55/min [1220000], rate=78964.40/min [1230000], rate=79354.84/min [1240000], rate=79742.77/min [1250000], rate=80128.21/min [1260000], rate=80511.18/min [1270000], rate=80634.92/min [1280000], rate=80842.11/min [1290000], rate=80962.34/min [1300000], rate=81081.08/min [1310000], rate=81030.93/min [1320000], rate=80816.33/min [1330000], rate=80687.56/min [1340000], rate=80480.48/min [1350000], rate=80357.14/min [1360000], rate=80314.96/min [1370000], rate=80351.91/min [1380000], rate=80388.35/min [1390000], rate=80424.30/min [1400000], rate=80536.91/min [1410000], rate=80648.24/min [1420000], rate=80758.29/min [1430000], rate=80790.96/min [1440000], rate=80898.88/min [1450000], rate=81005.59/min [1460000], rate=81111.11/min [1470000], rate=81215.47/min [1480000], rate=81617.65/min [1490000], rate=81943.17/min [1500000], rate=82116.79/min [1510000], rate=82288.83/min [1520000], rate=82384.82/min [1530000], rate=82553.96/min [1540000], rate=82721.58/min [1550000], rate=82813.89/min [1560000], rate=83052.35/min [1570000], rate=82922.54/min [1580000], rate=82794.76/min [1590000], rate=82956.52/min [1600000], rate=82830.03/min [1610000], rate=82705.48/min [1620000], rate=82723.40/min [1630000], rate=82741.12/min [1640000], rate=82689.08/min [1650000], rate=82845.19/min [1660000], rate=82930.89/min [1670000], rate=83084.58/min [1680000], rate=83374.69/min [1690000], rate=83663.37/min [1700000], rate=83743.84/min [1710000], rate=83823.53/min [1720000], rate=83970.71/min [1730000], rate=84116.69/min -building interval tree based on /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=42857.14/min [20000], rate=44444.44/min [30000], rate=47368.42/min [40000], rate=47058.82/min [50000], rate=47619.05/min [60000], rate=48000.00/min [70000], rate=48275.86/min [80000], rate=48000.00/min [90000], rate=48648.65/min [100000], rate=49180.33/min [110000], rate=48888.89/min [120000], rate=48979.59/min [130000], rate=50000.00/min [140000], rate=50602.41/min [150000], rate=51136.36/min [160000], rate=51336.90/min [170000], rate=50746.27/min [180000], rate=50943.40/min [190000], rate=51583.71/min [200000], rate=52401.75/min [210000], rate=52941.18/min [220000], rate=53225.81/min [230000], rate=53906.25/min [240000], rate=54545.45/min [250000], rate=55350.55/min [260000], rate=56115.11/min [270000], rate=56643.36/min [280000], rate=57337.88/min [290000], rate=57807.31/min [300000], rate=58631.92/min [310000], rate=59235.67/min [320000], rate=60000.00/min [330000], rate=60736.20/min [340000], rate=61445.78/min [350000], rate=62130.18/min [360000], rate=62973.76/min [370000], rate=62535.21/min [380000], rate=61290.32/min [390000], rate=60309.28/min [400000], rate=59259.26/min [410000], rate=58711.22/min [420000], rate=58064.52/min [430000], rate=57589.29/min [440000], rate=57142.86/min [450000], rate=56842.11/min [460000], rate=56557.38/min [470000], rate=56400.00/min [480000], rate=56470.59/min [490000], rate=56321.84/min [500000], rate=55970.15/min [510000], rate=55941.50/min [520000], rate=56014.36/min [530000], rate=56183.75/min [540000], rate=56347.83/min [550000], rate=56410.26/min [560000], rate=56470.59/min [570000], rate=56622.52/min [580000], rate=56862.75/min [590000], rate=57189.01/min [600000], rate=57416.27/min [610000], rate=57637.80/min [620000], rate=57853.81/min [630000], rate=58153.85/min [640000], rate=58536.59/min [650000], rate=59001.51/min [660000], rate=59370.31/min [670000], rate=59643.92/min [680000], rate=60000.00/min [690000], rate=60349.85/min [700000], rate=60781.48/min [710000], rate=61294.96/min [720000], rate=61714.29/min [730000], rate=62127.66/min [740000], rate=62359.55/min [750000], rate=62586.93/min [760000], rate=62809.92/min [770000], rate=63028.65/min [780000], rate=63328.82/min [790000], rate=63624.16/min [800000], rate=63914.78/min [810000], rate=64200.79/min [820000], rate=64566.93/min [830000], rate=64928.29/min [840000], rate=65200.52/min [850000], rate=65552.70/min [860000], rate=65900.38/min [870000], rate=66243.65/min [880000], rate=66498.74/min [890000], rate=66917.29/min [900000], rate=67584.48/min [910000], rate=68079.80/min [920000], rate=68656.72/min [930000], rate=69230.77/min [940000], rate=69629.63/min [950000], rate=70283.60/min [960000], rate=70761.67/min [970000], rate=71062.27/min [980000], rate=71445.93/min [990000], rate=72000.00/min [1000000], rate=72551.39/min [1010000], rate=73012.05/min [1020000], rate=73557.69/min [1030000], rate=74011.98/min [1040000], rate=74551.97/min [1050000], rate=75089.39/min [1060000], rate=75534.44/min [1070000], rate=75976.33/min [1080000], rate=76686.39/min [1090000], rate=77304.96/min [1100000], rate=77738.52/min [1110000], rate=77894.74/min [1120000], rate=78230.50/min [1130000], rate=78563.15/min [1140000], rate=78983.83/min [1150000], rate=79401.61/min [1160000], rate=79908.15/min [1170000], rate=80412.37/min [1180000], rate=80637.81/min [1190000], rate=80860.70/min [1200000], rate=80989.88/min [1210000], rate=81298.99/min [1220000], rate=81423.80/min [1230000], rate=81818.18/min [1240000], rate=82028.67/min [1250000], rate=82236.84/min [1260000], rate=82173.91/min [1270000], rate=82200.65/min [1280000], rate=82315.11/min [1290000], rate=82428.12/min [1300000], rate=82539.68/min [1310000], rate=82649.84/min [1320000], rate=82758.62/min [1330000], rate=82866.04/min [1340000], rate=83057.85/min [1350000], rate=83247.69/min [1360000], rate=83350.36/min [1370000], rate=83536.59/min [1380000], rate=83636.36/min [1390000], rate=83567.13/min [1400000], rate=83168.32/min [1410000], rate=82697.95/min [1420000], rate=82398.45/min [1430000], rate=82105.26/min [1440000], rate=81818.18/min [1450000], rate=81537.02/min [1460000], rate=81111.11/min [1470000], rate=80769.23/min [1480000], rate=80434.78/min [1490000], rate=80179.37/min [1500000], rate=79928.95/min [1510000], rate=79823.79/min [1520000], rate=79790.03/min [1530000], rate=79756.73/min [1540000], rate=79723.90/min [1550000], rate=79691.52/min [1560000], rate=79659.57/min [1570000], rate=79695.43/min [1580000], rate=79730.87/min [1590000], rate=79765.89/min [1600000], rate=79933.39/min [1610000], rate=80165.98/min [1620000], rate=80397.02/min [1630000], rate=80626.55/min [1640000], rate=80788.18/min [1650000], rate=81014.73/min [1660000], rate=81107.49/min [1670000], rate=81067.96/min [1680000], rate=80769.23/min [1690000], rate=80540.11/min [1700000], rate=80314.96/min [1710000], rate=80218.92/min [1720000], rate=80124.22/min [1730000], rate=80030.84/min [1740000], rate=79938.74/min -building interval tree based on /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=100000.00/min [20000], rate=100000.00/min [30000], rate=105882.35/min [40000], rate=104347.83/min [50000], rate=103448.28/min [60000], rate=112500.00/min [70000], rate=116666.67/min [80000], rate=126315.79/min [90000], rate=135000.00/min [100000], rate=136363.64/min [110000], rate=140425.53/min [120000], rate=146938.78/min [130000], rate=147169.81/min [140000], rate=142372.88/min [150000], rate=130434.78/min [160000], rate=121518.99/min [170000], rate=114606.74/min [180000], rate=109090.91/min [190000], rate=105555.56/min [200000], rate=103448.28/min [210000], rate=102439.02/min [220000], rate=100763.36/min [230000], rate=100000.00/min [240000], rate=100000.00/min [250000], rate=100000.00/min [260000], rate=100645.16/min [270000], rate=100000.00/min [280000], rate=100598.80/min [290000], rate=98863.64/min [300000], rate=95238.10/min [310000], rate=89855.07/min [320000], rate=86877.83/min [330000], rate=84255.32/min [340000], rate=81927.71/min [350000], rate=80459.77/min [360000], rate=80297.40/min [370000], rate=79285.71/min [380000], rate=77815.70/min [390000], rate=75728.16/min [400000], rate=74534.16/min [410000], rate=74096.39/min [420000], rate=73684.21/min [430000], rate=73295.45/min [440000], rate=72928.18/min [450000], rate=72776.28/min [460000], rate=72251.31/min [470000], rate=71755.73/min [480000], rate=71111.11/min [490000], rate=70673.08/min [500000], rate=70422.54/min [510000], rate=70183.49/min [520000], rate=70112.36/min [530000], rate=70044.05/min [540000], rate=69978.40/min [550000], rate=69915.25/min [560000], rate=69709.54/min [570000], rate=69371.20/min [580000], rate=69461.08/min [590000], rate=69548.13/min [600000], rate=69767.44/min [610000], rate=69714.29/min [620000], rate=69402.99/min [630000], rate=69485.29/min [640000], rate=69439.42/min [650000], rate=69767.44/min [660000], rate=70088.50/min [670000], rate=70279.72/min [680000], rate=70223.75/min [690000], rate=70169.49/min [700000], rate=70234.11/min [710000], rate=70181.22/min [720000], rate=70358.31/min [730000], rate=70531.40/min [740000], rate=70700.64/min [750000], rate=70754.72/min [760000], rate=70807.45/min [770000], rate=70858.90/min [780000], rate=71124.62/min [790000], rate=71171.17/min [800000], rate=71216.62/min [810000], rate=71261.00/min [820000], rate=71407.84/min [830000], rate=71551.72/min [840000], rate=71794.87/min [850000], rate=71932.30/min [860000], rate=72167.83/min [870000], rate=72500.00/min [880000], rate=72827.59/min [890000], rate=73150.68/min [900000], rate=73569.48/min [910000], rate=73783.78/min [920000], rate=74093.96/min [930000], rate=74202.13/min [940000], rate=73725.49/min [950000], rate=73170.73/min [960000], rate=72727.27/min [970000], rate=72298.14/min [980000], rate=71970.62/min [990000], rate=71739.13/min [1000000], rate=71513.71/min [1010000], rate=71378.09/min [1020000], rate=71245.63/min [1030000], rate=71116.23/min [1040000], rate=70989.76/min [1050000], rate=70786.52/min [1060000], rate=70745.27/min [1070000], rate=70627.06/min [1080000], rate=70588.24/min [1090000], rate=70626.35/min [1100000], rate=70663.81/min [1110000], rate=70775.77/min [1120000], rate=70811.38/min [1130000], rate=70846.39/min [1140000], rate=70807.45/min [1150000], rate=70841.89/min [1160000], rate=70948.01/min [1170000], rate=71052.63/min [1180000], rate=71013.04/min [1190000], rate=71115.54/min [1200000], rate=71287.13/min [1210000], rate=71386.43/min [1220000], rate=71345.03/min [1230000], rate=71442.40/min [1240000], rate=71332.69/min [1250000], rate=71225.07/min [1260000], rate=71253.53/min [1270000], rate=71214.95/min [1280000], rate=71111.11/min [1290000], rate=71205.15/min [1300000], rate=71103.01/min [1310000], rate=71066.91/min [1320000], rate=70967.74/min [1330000], rate=70996.44/min [1340000], rate=70962.05/min [1350000], rate=70928.20/min [1360000], rate=70894.87/min [1370000], rate=70862.07/min [1380000], rate=70890.41/min [1390000], rate=70797.96/min [1400000], rate=70647.60/min [1410000], rate=70441.30/min [1420000], rate=70355.08/min [1430000], rate=70212.77/min [1440000], rate=70129.87/min [1450000], rate=69991.95/min [1460000], rate=70023.98/min [1470000], rate=70055.60/min [1480000], rate=70142.18/min [1490000], rate=70338.32/min [1500000], rate=70422.54/min [1510000], rate=70505.84/min [1520000], rate=70642.91/min [1530000], rate=70833.33/min [1540000], rate=70967.74/min [1550000], rate=71100.92/min [1560000], rate=71232.88/min [1570000], rate=71417.74/min [1580000], rate=71547.17/min [1590000], rate=71783.30/min [1600000], rate=72072.07/min [1610000], rate=72251.31/min [1620000], rate=72429.21/min [1630000], rate=72605.79/min [1640000], rate=72406.18/min [1650000], rate=72104.88/min [1660000], rate=71809.66/min [1670000], rate=71520.34/min [1680000], rate=71186.44/min [1690000], rate=70859.54/min [1700000], rate=70588.24/min [1710000], rate=70322.14/min [1720000], rate=70108.70/min -building interval tree based on /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=120000.00/min [20000], rate=150000.00/min [30000], rate=150000.00/min [40000], rate=141176.47/min [50000], rate=166666.67/min [60000], rate=171428.57/min [70000], rate=190909.09/min [80000], rate=218181.82/min [90000], rate=216000.00/min [100000], rate=193548.39/min [110000], rate=194117.65/min [120000], rate=189473.68/min [130000], rate=195000.00/min [140000], rate=190909.09/min [150000], rate=200000.00/min [160000], rate=213333.33/min [170000], rate=212500.00/min [180000], rate=203773.58/min [190000], rate=203571.43/min [200000], rate=196721.31/min [210000], rate=193846.15/min [220000], rate=197014.93/min [230000], rate=197142.86/min [240000], rate=197260.27/min [250000], rate=189873.42/min [260000], rate=192592.59/min [270000], rate=188372.09/min [280000], rate=186666.67/min [290000], rate=189130.43/min [300000], rate=191489.36/min [310000], rate=177142.86/min [320000], rate=156097.56/min [330000], rate=138461.54/min [340000], rate=125153.37/min [350000], rate=114754.10/min [360000], rate=106930.69/min [370000], rate=100000.00/min [380000], rate=94214.88/min [390000], rate=89655.17/min [400000], rate=84805.65/min [410000], rate=80921.05/min [420000], rate=76829.27/min [430000], rate=74351.59/min [440000], rate=71544.72/min [450000], rate=69053.71/min [460000], rate=65402.84/min [470000], rate=64236.90/min [480000], rate=63157.89/min [490000], rate=62156.45/min [500000], rate=61224.49/min [510000], rate=60474.31/min [520000], rate=60115.61/min [530000], rate=59774.44/min [540000], rate=59449.54/min [550000], rate=59245.96/min [560000], rate=59050.97/min [570000], rate=58965.52/min [580000], rate=58783.78/min [590000], rate=58706.47/min [600000], rate=58727.57/min [610000], rate=58747.99/min [620000], rate=58767.77/min [630000], rate=58786.94/min [640000], rate=58805.51/min [650000], rate=58912.39/min [660000], rate=58928.57/min [670000], rate=58944.28/min [680000], rate=58959.54/min [690000], rate=59058.49/min [700000], rate=59238.36/min [710000], rate=59414.23/min [720000], rate=59586.21/min [730000], rate=59836.07/min [740000], rate=60081.19/min [750000], rate=60402.68/min [760000], rate=60719.04/min [770000], rate=61111.11/min [780000], rate=61417.32/min [790000], rate=61718.75/min [800000], rate=62095.73/min [810000], rate=62467.87/min [820000], rate=62755.10/min [830000], rate=62720.40/min [840000], rate=62842.89/min [850000], rate=62885.33/min [860000], rate=63080.68/min [870000], rate=63349.51/min [880000], rate=63537.91/min [890000], rate=63723.15/min [900000], rate=63981.04/min [910000], rate=64159.81/min [920000], rate=64485.98/min [930000], rate=64808.36/min [940000], rate=65051.90/min [950000], rate=65366.97/min [960000], rate=65603.64/min [970000], rate=65911.66/min [980000], rate=66290.87/min [990000], rate=66591.93/min [1000000], rate=66889.63/min [1010000], rate=66520.31/min [1020000], rate=66162.16/min [1030000], rate=65884.86/min [1040000], rate=65753.42/min [1050000], rate=65556.71/min [1060000], rate=65297.74/min [1070000], rate=65045.59/min [1080000], rate=64864.86/min [1090000], rate=64880.95/min [1100000], rate=64769.38/min [1110000], rate=64723.03/min [1120000], rate=64615.38/min [1130000], rate=64632.98/min [1140000], rate=64711.45/min [1150000], rate=64667.29/min [1160000], rate=64623.96/min [1170000], rate=64581.42/min [1180000], rate=64539.65/min [1190000], rate=64556.96/min [1200000], rate=64573.99/min [1210000], rate=64648.26/min [1220000], rate=64721.49/min [1230000], rate=64850.62/min [1240000], rate=65034.97/min [1250000], rate=65217.39/min [1260000], rate=65397.92/min [1270000], rate=65576.59/min [1280000], rate=65809.77/min [1290000], rate=65704.58/min [1300000], rate=65436.24/min [1310000], rate=65120.13/min [1320000], rate=64918.03/min [1330000], rate=64772.73/min [1340000], rate=64630.23/min [1350000], rate=64490.45/min [1360000], rate=64404.10/min [1370000], rate=64268.96/min [1380000], rate=64186.05/min [1390000], rate=64153.85/min [1400000], rate=64073.23/min [1410000], rate=63993.95/min [1420000], rate=63915.98/min [1430000], rate=63886.82/min [1440000], rate=63810.93/min [1450000], rate=63782.99/min [1460000], rate=63848.40/min [1470000], rate=63959.39/min [1480000], rate=64069.26/min [1490000], rate=64178.03/min [1500000], rate=64377.68/min [1510000], rate=64483.99/min [1520000], rate=64635.01/min [1530000], rate=64830.51/min [1540000], rate=65024.63/min [1550000], rate=65171.69/min [1560000], rate=65271.97/min [1570000], rate=65371.27/min [1580000], rate=65469.61/min [1590000], rate=65567.01/min [1600000], rate=65753.42/min [1610000], rate=65938.57/min [1620000], rate=66077.50/min [1630000], rate=66215.30/min [1640000], rate=66351.99/min [1650000], rate=66487.58/min [1660000], rate=66444.30/min [1670000], rate=66357.62/min [1680000], rate=66141.73/min [1690000], rate=66101.69/min [1700000], rate=66104.99/min [1710000], rate=66150.87/min [1720000], rate=66153.85/min [1730000], rate=66198.98/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir --filt_file /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 12000000.00 reads per min processed... 9000000.00 reads per min processed... 6000000.00 reads per min processed... 4285714.29 reads per min processed... 4000000.00 reads per min processed... 3818181.82 reads per min processed... 3692307.69 reads per min processed... 3600000.00 reads per min processed... 3529411.76 reads per min processed... 3473684.21 reads per min processed... 3428571.43 reads per min processed... 3391304.35 reads per min processed... 3360000.00 reads per min processed... 3214285.71 reads per min processed... 3200000.00 reads per min processed... 3090909.09 reads per min processed... 3085714.29 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3069767.44 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3061224.49 reads per min processed... 3058823.53 reads per min processed... 3056603.77 reads per min processed... 3054545.45 reads per min processed... 3107142.86 reads per min processed... 3050847.46 reads per min processed... 3049180.33 reads per min processed... 3047619.05 reads per min processed... 3046153.85 reads per min processed... 3044776.12 reads per min processed... 3043478.26 reads per min processed... 3085714.29 reads per min processed... 3126760.56 reads per min processed... 3166666.67 reads per min processed... 3120000.00 reads per min processed... 3116883.12 reads per min processed... 3113924.05 reads per min processed... 3073170.73 reads per min processed... 3071428.57 reads per min processed... 3069767.44 reads per min processed... 3033707.87 reads per min processed... 3032967.03 reads per min processed... 3032258.06 reads per min processed... 3031578.95 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 2971428.57 reads per min processed... 2971962.62 reads per min processed... 2945454.55 reads per min processed... 2946428.57 reads per min processed... 2947368.42 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.2KRvRuK8kC/BVT_FFPE_TRNA_stm_08_A23WKFTLT4_3.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -143220.459054 EM: Round [1] log likelihood: -143107.892212 EM: Round [2] log likelihood: -143065.770515 EM: Round [3] log likelihood: -143045.888824 EM: Round [4] log likelihood: -143035.535729 EM: Round [5] log likelihood: -143029.850675 EM: Round [6] log likelihood: -143026.590219 EM: Round [7] log likelihood: -143024.635798 EM: Round [8] log likelihood: -143023.409518 EM: Round [9] log likelihood: -143022.604617 EM: Round [10] log likelihood: -143022.053476 EM: Round [11] log likelihood: -143021.661506 EM: Round [12] log likelihood: -143021.373441 EM: Round [13] log likelihood: -143021.155808 EM: Round [14] log likelihood: -143020.987589 EM: Round [15] log likelihood: -143020.855113 EM: Round [16] log likelihood: -143020.749186 EM: Round [17] log likelihood: -143020.663430 EM: Round [18] log likelihood: -143020.593295 EM: Round [19] log likelihood: -143020.535453 EM: Round [20] log likelihood: -143020.487411 EM: Round [21] log likelihood: -143020.447272 EM: Round [22] log likelihood: -143020.413562 EM: Round [23] log likelihood: -143020.385122 EM: Round [24] log likelihood: -143020.361031 EM: Round [25] log likelihood: -143020.340544 EM: Round [26] log likelihood: -143020.323061 EM: Round [27] log likelihood: -143020.308087 EM: Round [28] log likelihood: -143020.295219 EM: Round [29] log likelihood: -143020.284122 EM: Round [30] log likelihood: -143020.274517 EM: Round [31] log likelihood: -143020.266173 EM: Round [32] log likelihood: -143020.258898 EM: Round [33] log likelihood: -143020.252529 EM: Round [34] log likelihood: -143020.246931 EM: Round [35] log likelihood: -143020.241990 EM: Round [36] log likelihood: -143020.237609 EM: Round [37] log likelihood: -143020.233709 EM: Round [38] log likelihood: -143020.230220 EM: Round [39] log likelihood: -143020.227085 EM: Round [40] log likelihood: -143020.224254 EM: Round [41] log likelihood: -143020.221687 EM: Round [42] log likelihood: -143020.219347 EM: Round [43] log likelihood: -143020.217206 EM: Round [44] log likelihood: -143020.215237 EM: Round [45] log likelihood: -143020.213418 EM: Round [46] log likelihood: -143020.211732 EM: Round [47] log likelihood: -143020.210161 EM: Round [48] log likelihood: -143020.208692 EM: Round [49] log likelihood: -143020.207314 EM: Round [50] log likelihood: -143020.206016 EM: Round [51] log likelihood: -143020.204791 EM: Round [52] log likelihood: -143020.203629 EM: Round [53] log likelihood: -143020.202526 EM: Round [54] log likelihood: -143020.201474 EM: Round [55] log likelihood: -143020.200470 EM: Round [56] log likelihood: -143020.199510 EM: Round [57] log likelihood: -143020.198589 EM: Round [58] log likelihood: -143020.197704 EM: Round [59] log likelihood: -143020.196853 EM: Round [60] log likelihood: -143020.196033 EM: Round [61] log likelihood: -143020.195242 EM: Round [62] log likelihood: -143020.194479 EM: Round [63] log likelihood: -143020.193741 EM: Round [64] log likelihood: -143020.193027 EM: Round [65] log likelihood: -143020.192336 EM: Round [66] log likelihood: -143020.191666 EM: Round [67] log likelihood: -143020.191017 EM: Round [68] log likelihood: -143020.190388 EM: Round [69] log likelihood: -143020.189777 EM: Round [70] log likelihood: -143020.189185 EM: Round [71] log likelihood: -143020.188609 EM: Round [72] log likelihood: -143020.188050 EM: Round [73] log likelihood: -143020.187508 EM: Round [74] log likelihood: -143020.186981 EM: Round [75] log likelihood: -143020.186469 EM: Round [76] log likelihood: -143020.185971 EM: Round [77] log likelihood: -143020.185487 EM: Round [78] log likelihood: -143020.185018 EM: Round [79] log likelihood: -143020.184561 EM: Round [80] log likelihood: -143020.184117 EM: Round [81] log likelihood: -143020.183686 EM: Round [82] log likelihood: -143020.183267 EM: Round [83] log likelihood: -143020.182860 EM: Round [84] log likelihood: -143020.182465 EM: Round [85] log likelihood: -143020.182080 EM: Round [86] log likelihood: -143020.181707 EM: Round [87] log likelihood: -143020.181344 EM: Round [88] log likelihood: -143020.180992 EM: Round [89] log likelihood: -143020.180650 EM: Round [90] log likelihood: -143020.180317 EM: Round [91] log likelihood: -143020.179995 EM: Round [92] log likelihood: -143020.179681 EM: Round [93] log likelihood: -143020.179377 EM: Round [94] log likelihood: -143020.179081 EM: Round [95] log likelihood: -143020.178794 EM: Round [96] log likelihood: -143020.178516 EM: Round [97] log likelihood: -143020.178245 EM: Round [98] log likelihood: -143020.177983 EM: Round [99] log likelihood: -143020.177728 EM: Round [100] log likelihood: -143020.177481 EM: Round [101] log likelihood: -143020.177241 EM: Round [102] log likelihood: -143020.177008 EM: Round [103] log likelihood: -143020.176782 EM: Round [104] log likelihood: -143020.176563 EM: Round [105] log likelihood: -143020.176351 EM: Round [106] log likelihood: -143020.176144 EM: Round [107] log likelihood: -143020.175944 EM: Round [108] log likelihood: -143020.175750 EM: Round [109] log likelihood: -143020.175562 EM: Round [110] log likelihood: -143020.175380 EM: Round [111] log likelihood: -143020.175203 EM: Round [112] log likelihood: -143020.175031 EM: Round [113] log likelihood: -143020.174864 EM: Round [114] log likelihood: -143020.174703 EM: Round [115] log likelihood: -143020.174546 EM: Round [116] log likelihood: -143020.174395 EM: Round [117] log likelihood: -143020.174248 EM: Round [118] log likelihood: -143020.174105 EM: Round [119] log likelihood: -143020.173967 EM: Round [120] log likelihood: -143020.173832 EM: Round [121] log likelihood: -143020.173702 EM: Round [122] log likelihood: -143020.173576 EM: Round [123] log likelihood: -143020.173454 EM: Round [124] log likelihood: -143020.173336 EM: Round [125] log likelihood: -143020.173221 EM: Round [126] log likelihood: -143020.173110 EM: Round [127] log likelihood: -143020.173002 EM: Round [128] log likelihood: -143020.172897 EM: Round [129] log likelihood: -143020.172796 EM: Round [130] log likelihood: -143020.172698 EM: Stopping iterations at round 130 due to insufficient improvement in likelihood. EM: Starting log likelihood: -143136.290389 EM: Round [1] log likelihood: -143040.255434 EM: Round [2] log likelihood: -143005.085242 EM: Round [3] log likelihood: -142988.941019 EM: Round [4] log likelihood: -142980.705320 EM: Round [5] log likelihood: -142976.237358 EM: Round [6] log likelihood: -142973.689072 EM: Round [7] log likelihood: -142972.162670 EM: Round [8] log likelihood: -142971.202233 EM: Round [9] log likelihood: -142970.568371 EM: Round [10] log likelihood: -142970.131178 EM: Round [11] log likelihood: -142969.817650 EM: Round [12] log likelihood: -142969.585221 EM: Round [13] log likelihood: -142969.408112 EM: Round [14] log likelihood: -142969.270109 EM: Round [15] log likelihood: -142969.160625 EM: Round [16] log likelihood: -142969.072504 EM: Round [17] log likelihood: -142969.000750 EM: Round [18] log likelihood: -142968.941773 EM: Round [19] log likelihood: -142968.892922 EM: Round [20] log likelihood: -142968.852200 EM: Round [21] log likelihood: -142968.818072 EM: Round [22] log likelihood: -142968.789336 EM: Round [23] log likelihood: -142968.765043 EM: Round [24] log likelihood: -142968.744428 EM: Round [25] log likelihood: -142968.726875 EM: Round [26] log likelihood: -142968.711880 EM: Round [27] log likelihood: -142968.699028 EM: Round [28] log likelihood: -142968.687978 EM: Round [29] log likelihood: -142968.678446 EM: Round [30] log likelihood: -142968.670197 EM: Round [31] log likelihood: -142968.663032 EM: Round [32] log likelihood: -142968.656787 EM: Round [33] log likelihood: -142968.651324 EM: Round [34] log likelihood: -142968.646526 EM: Round [35] log likelihood: -142968.642294 EM: Round [36] log likelihood: -142968.638547 EM: Round [37] log likelihood: -142968.635215 EM: Round [38] log likelihood: -142968.632238 EM: Round [39] log likelihood: -142968.629567 EM: Round [40] log likelihood: -142968.627159 EM: Round [41] log likelihood: -142968.624978 EM: Round [42] log likelihood: -142968.622995 EM: Round [43] log likelihood: -142968.621182 EM: Round [44] log likelihood: -142968.619518 EM: Round [45] log likelihood: -142968.617984 EM: Round [46] log likelihood: -142968.616563 EM: Round [47] log likelihood: -142968.615243 EM: Round [48] log likelihood: -142968.614010 EM: Round [49] log likelihood: -142968.612856 EM: Round [50] log likelihood: -142968.611771 EM: Round [51] log likelihood: -142968.610747 EM: Round [52] log likelihood: -142968.609779 EM: Round [53] log likelihood: -142968.608860 EM: Round [54] log likelihood: -142968.607986 EM: Round [55] log likelihood: -142968.607153 EM: Round [56] log likelihood: -142968.606357 EM: Round [57] log likelihood: -142968.605594 EM: Round [58] log likelihood: -142968.604863 EM: Round [59] log likelihood: -142968.604161 EM: Round [60] log likelihood: -142968.603485 EM: Round [61] log likelihood: -142968.602834 EM: Round [62] log likelihood: -142968.602205 EM: Round [63] log likelihood: -142968.601599 EM: Round [64] log likelihood: -142968.601013 EM: Round [65] log likelihood: -142968.600446 EM: Round [66] log likelihood: -142968.599897 EM: Round [67] log likelihood: -142968.599366 EM: Round [68] log likelihood: -142968.598851 EM: Round [69] log likelihood: -142968.598352 EM: Round [70] log likelihood: -142968.597868 EM: Round [71] log likelihood: -142968.597398 EM: Round [72] log likelihood: -142968.596942 EM: Round [73] log likelihood: -142968.596500 EM: Round [74] log likelihood: -142968.596070 EM: Round [75] log likelihood: -142968.595653 EM: Round [76] log likelihood: -142968.595247 EM: Round [77] log likelihood: -142968.594854 EM: Round [78] log likelihood: -142968.594471 EM: Round [79] log likelihood: -142968.594100 EM: Round [80] log likelihood: -142968.593739 EM: Round [81] log likelihood: -142968.593388 EM: Round [82] log likelihood: -142968.593047 EM: Round [83] log likelihood: -142968.592716 EM: Round [84] log likelihood: -142968.592395 EM: Round [85] log likelihood: -142968.592082 EM: Round [86] log likelihood: -142968.591778 EM: Round [87] log likelihood: -142968.591483 EM: Round [88] log likelihood: -142968.591197 EM: Round [89] log likelihood: -142968.590918 EM: Round [90] log likelihood: -142968.590648 EM: Round [91] log likelihood: -142968.590385 EM: Round [92] log likelihood: -142968.590130 EM: Round [93] log likelihood: -142968.589882 EM: Round [94] log likelihood: -142968.589641 EM: Round [95] log likelihood: -142968.589407 EM: Round [96] log likelihood: -142968.589180 EM: Round [97] log likelihood: -142968.588959 EM: Round [98] log likelihood: -142968.588745 EM: Round [99] log likelihood: -142968.588537 EM: Round [100] log likelihood: -142968.588335 EM: Round [101] log likelihood: -142968.588139 EM: Round [102] log likelihood: -142968.587949 EM: Round [103] log likelihood: -142968.587764 EM: Round [104] log likelihood: -142968.587585 EM: Round [105] log likelihood: -142968.587411 EM: Round [106] log likelihood: -142968.587242 EM: Round [107] log likelihood: -142968.587079 EM: Round [108] log likelihood: -142968.586920 EM: Round [109] log likelihood: -142968.586765 EM: Round [110] log likelihood: -142968.586615 EM: Round [111] log likelihood: -142968.586470 EM: Round [112] log likelihood: -142968.586329 EM: Round [113] log likelihood: -142968.586192 EM: Round [114] log likelihood: -142968.586060 EM: Round [115] log likelihood: -142968.585931 EM: Round [116] log likelihood: -142968.585806 EM: Round [117] log likelihood: -142968.585685 EM: Round [118] log likelihood: -142968.585568 EM: Round [119] log likelihood: -142968.585454 EM: Round [120] log likelihood: -142968.585343 EM: Round [121] log likelihood: -142968.585236 EM: Round [122] log likelihood: -142968.585132 EM: Round [123] log likelihood: -142968.585031 EM: Round [124] log likelihood: -142968.584933 EM: Stopping iterations at round 124 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 172931109 > /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir > /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir --annotate /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir -done, see /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 1145, filtered: 7827) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.2KRvRuK8kC/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.2KRvRuK8kC/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000267369.1] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000287721.1] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000225292.2] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000228327.3] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000281896.1] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000282458.1] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000224086.6] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000224086.6] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000233836.7] WARNING, no entry stored in dbm for [ENSG00000233782.1] WARNING, no entry stored in dbm for [ENSG00000233930.4] WARNING, no entry stored in dbm for [ENSG00000286948.1] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000204622.11] WARNING, no entry stored in dbm for [ENSG00000235290.1] WARNING, no entry stored in dbm for [ENSG00000260971.4] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000272693.4] WARNING, no entry stored in dbm for [ENSG00000171658.8] WARNING, no entry stored in dbm for [ENSG00000128438.10] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000287411.1] WARNING, no entry stored in dbm for [ENSG00000263317.1] WARNING, no entry stored in dbm for [ENSG00000253181.2] WARNING, no entry stored in dbm for [ENSG00000230000.3] WARNING, no entry stored in dbm for [ENSG00000258479.6] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000249072.1] WARNING, no entry stored in dbm for [ENSG00000285219.2] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000249669.10] WARNING, no entry stored in dbm for [ENSG00000233606.2] WARNING, no entry stored in dbm for [ENSG00000233606.2] WARNING, no entry stored in dbm for [ENSG00000214433.4] WARNING, no entry stored in dbm for [ENSG00000239533.6] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000254275.6] WARNING, no entry stored in dbm for [ENSG00000215908.10] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000259984.1] WARNING, no entry stored in dbm for [ENSG00000230490.3] WARNING, no entry stored in dbm for [ENSG00000277125.1] WARNING, no entry stored in dbm for [ENSG00000282978.1] WARNING, no entry stored in dbm for [ENSG00000284648.1] WARNING, no entry stored in dbm for [ENSG00000284610.1] WARNING, no entry stored in dbm for [ENSG00000262712.1] WARNING, no entry stored in dbm for [ENSG00000213594.4] WARNING, no entry stored in dbm for [ENSG00000254610.3] WARNING, no entry stored in dbm for [ENSG00000255367.3] WARNING, no entry stored in dbm for [ENSG00000237004.4] WARNING, no entry stored in dbm for [ENSG00000231952.3] WARNING, no entry stored in dbm for [ENSG00000214189.9] WARNING, no entry stored in dbm for [ENSG00000197332.9] WARNING, no entry stored in dbm for [ENSG00000268892.1] WARNING, no entry stored in dbm for [ENSG00000278205.1] WARNING, no entry stored in dbm for [ENSG00000278205.1] WARNING, no entry stored in dbm for [ENSG00000278205.1] WARNING, no entry stored in dbm for [ENSG00000262879.6] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000250802.7] WARNING, no entry stored in dbm for [ENSG00000234961.1] WARNING, no entry stored in dbm for [ENSG00000255811.1] WARNING, no entry stored in dbm for [ENSG00000272848.2] WARNING, no entry stored in dbm for [ENSG00000251566.1] WARNING, no entry stored in dbm for [ENSG00000225292.2] WARNING, no entry stored in dbm for [ENSG00000236986.6] WARNING, no entry stored in dbm for [ENSG00000278416.1] WARNING, no entry stored in dbm for [ENSG00000281344.1] WARNING, no entry stored in dbm for [ENSG00000225685.1] WARNING, no entry stored in dbm for [ENSG00000278754.1] WARNING, no entry stored in dbm for [ENSG00000225393.1] WARNING, no entry stored in dbm for [ENSG00000212694.8] WARNING, no entry stored in dbm for [ENSG00000288062.1] WARNING, no entry stored in dbm for [ENSG00000219500.1] WARNING, no entry stored in dbm for [ENSG00000232000.3] WARNING, no entry stored in dbm for [ENSG00000278987.1] WARNING, no entry stored in dbm for [ENSG00000267324.1] WARNING, no entry stored in dbm for [ENSG00000288543.1] WARNING, no entry stored in dbm for [ENSG00000261879.7] WARNING, no entry stored in dbm for [ENSG00000240350.3] WARNING, no entry stored in dbm for [ENSG00000231312.7] WARNING, no entry stored in dbm for [ENSG00000287920.1] WARNING, no entry stored in dbm for [ENSG00000254634.4] WARNING, no entry stored in dbm for [ENSG00000258186.2] WARNING, no entry stored in dbm for [ENSG00000282924.1] WARNING, no entry stored in dbm for [ENSG00000259070.7] WARNING, no entry stored in dbm for [ENSG00000215790.8] WARNING, no entry stored in dbm for [ENSG00000215790.8] WARNING, no entry stored in dbm for [ENSG00000197847.12] WARNING, no entry stored in dbm for [ENSG00000182796.14] WARNING, no entry stored in dbm for [ENSG00000234222.6] WARNING, no entry stored in dbm for [ENSG00000270330.1] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000224897.8] WARNING, no entry stored in dbm for [ENSG00000241529.3] WARNING, no entry stored in dbm for [ENSG00000239899.3] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000242071.3] WARNING, no entry stored in dbm for [ENSG00000225354.1] WARNING, no entry stored in dbm for [ENSG00000229235.1] WARNING, no entry stored in dbm for [ENSG00000219747.1] WARNING, no entry stored in dbm for [ENSG00000234589.4] WARNING, no entry stored in dbm for [ENSG00000215002.2] WARNING, no entry stored in dbm for [ENSG00000269244.1] WARNING, no entry stored in dbm for [ENSG00000230559.1] WARNING, no entry stored in dbm for [ENSG00000264910.2] WARNING, no entry stored in dbm for [ENSG00000213981.8] WARNING, no entry stored in dbm for [ENSG00000206975.1] WARNING, no entry stored in dbm for [ENSG00000199420.1] WARNING, no entry stored in dbm for [ENSG00000227154.4] WARNING, no entry stored in dbm for [ENSG00000179818.14] WARNING, no entry stored in dbm for [ENSG00000285533.2] WARNING, no entry stored in dbm for [ENSG00000258186.2] WARNING, no entry stored in dbm for [ENSG00000227195.11] WARNING, no entry stored in dbm for [ENSG00000240801.1] WARNING, no entry stored in dbm for [ENSG00000281741.2] WARNING, no entry stored in dbm for [ENSG00000281880.2] WARNING, no entry stored in dbm for [ENSG00000224609.8] WARNING, no entry stored in dbm for [ENSG00000245694.10] WARNING, no entry stored in dbm for [ENSG00000241350.1] WARNING, no entry stored in dbm for [ENSG00000286830.1] WARNING, no entry stored in dbm for [ENSG00000228430.9] WARNING, no entry stored in dbm for [ENSG00000237850.7] WARNING, no entry stored in dbm for [ENSG00000264116.6] WARNING, no entry stored in dbm for [ENSG00000266890.1] WARNING, no entry stored in dbm for [ENSG00000146556.14] WARNING, no entry stored in dbm for [ENSG00000278920.1] WARNING, no entry stored in dbm for [ENSG00000250284.3] WARNING, no entry stored in dbm for [ENSG00000286044.1] WARNING, no entry stored in dbm for [ENSG00000230409.3] WARNING, no entry stored in dbm for [ENSG00000272767.1] WARNING, no entry stored in dbm for [ENSG00000263065.1] WARNING, no entry stored in dbm for [ENSG00000256346.1] WARNING, no entry stored in dbm for [ENSG00000204933.3] WARNING, no entry stored in dbm for [ENSG00000272693.4] WARNING, no entry stored in dbm for [ENSG00000245532.9] WARNING, no entry stored in dbm for [ENSG00000273907.1] WARNING, no entry stored in dbm for [ENSG00000287431.1] WARNING, no entry stored in dbm for [ENSG00000280118.3] WARNING, no entry stored in dbm for [ENSG00000270760.1] WARNING, no entry stored in dbm for [ENSG00000286863.1] WARNING, no entry stored in dbm for [ENSG00000286863.1] WARNING, no entry stored in dbm for [ENSG00000286863.1] WARNING, no entry stored in dbm for [ENSG00000214955.5] WARNING, no entry stored in dbm for [ENSG00000244471.6] WARNING, no entry stored in dbm for [ENSG00000234801.3] WARNING, no entry stored in dbm for [ENSG00000258128.2] WARNING, no entry stored in dbm for [ENSG00000215386.13] WARNING, no entry stored in dbm for [ENSG00000241860.7] WARNING, no entry stored in dbm for [ENSG00000233006.8] WARNING, no entry stored in dbm for [ENSG00000267519.6] WARNING, no entry stored in dbm for [ENSG00000253230.9] WARNING, no entry stored in dbm for [ENSG00000273180.1] WARNING, no entry stored in dbm for [ENSG00000233365.2] WARNING, no entry stored in dbm for [ENSG00000198358.4] WARNING, no entry stored in dbm for [ENSG00000232709.1] WARNING, no entry stored in dbm for [ENSG00000242529.1] WARNING, no entry stored in dbm for [ENSG00000248323.7] WARNING, no entry stored in dbm for [ENSG00000093100.13] WARNING, no entry stored in dbm for [ENSG00000233532.6] WARNING, no entry stored in dbm for [ENSG00000261121.2] WARNING, no entry stored in dbm for [ENSG00000259425.5] WARNING, no entry stored in dbm for [ENSG00000238042.5] WARNING, no entry stored in dbm for [ENSG00000261064.1] WARNING, no entry stored in dbm for [ENSG00000261064.1] WARNING, no entry stored in dbm for [ENSG00000236393.2] WARNING, no entry stored in dbm for [ENSG00000233901.6] WARNING, no entry stored in dbm for [ENSG00000223823.1] WARNING, no entry stored in dbm for [ENSG00000235703.6] WARNING, no entry stored in dbm for [ENSG00000232677.9] WARNING, no entry stored in dbm for [ENSG00000228221.6] WARNING, no entry stored in dbm for [ENSG00000188185.13] WARNING, no entry stored in dbm for [ENSG00000231721.7] WARNING, no entry stored in dbm for [ENSG00000226806.1] WARNING, no entry stored in dbm for [ENSG00000230006.7] WARNING, no entry stored in dbm for [ENSG00000188825.14] WARNING, no entry stored in dbm for [ENSG00000255815.3] WARNING, no entry stored in dbm for [ENSG00000245648.2] WARNING, no entry stored in dbm for [ENSG00000233652.1] WARNING, no entry stored in dbm for [ENSG00000203645.2] WARNING, no entry stored in dbm for [ENSG00000253266.1] WARNING, no entry stored in dbm for [ENSG00000283041.1] WARNING, no entry stored in dbm for [ENSG00000268906.1] WARNING, no entry stored in dbm for [ENSG00000224897.8] WARNING, no entry stored in dbm for [ENSG00000284005.1] WARNING, no entry stored in dbm for [ENSG00000231784.8] WARNING, no entry stored in dbm for [ENSG00000230979.3] WARNING, no entry stored in dbm for [ENSG00000242779.7] WARNING, no entry stored in dbm for [ENSG00000229781.1] WARNING, no entry stored in dbm for [ENSG00000237092.2] WARNING, no entry stored in dbm for [ENSG00000222037.5] WARNING, no entry stored in dbm for [ENSG00000229391.7] WARNING, no entry stored in dbm for [ENSG00000181126.13] WARNING, no entry stored in dbm for [ENSG00000229391.7] WARNING, no entry stored in dbm for [ENSG00000204622.11] WARNING, no entry stored in dbm for [ENSG00000230936.1] WARNING, no entry stored in dbm for [ENSG00000281344.1] WARNING, no entry stored in dbm for [ENSG00000265541.1] WARNING, no entry stored in dbm for [ENSG00000281896.1] WARNING, no entry stored in dbm for [ENSG00000260971.4] WARNING, no entry stored in dbm for [ENSG00000230590.11] WARNING, no entry stored in dbm for [ENSG00000258186.2] WARNING, no entry stored in dbm for [ENSG00000283095.1] WARNING, no entry stored in dbm for [ENSG00000277737.3] WARNING, no entry stored in dbm for [ENSG00000237238.3] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000213468.7] WARNING, no entry stored in dbm for [ENSG00000288056.1] WARNING, no entry stored in dbm for [ENSG00000215023.2] WARNING, no entry stored in dbm for [ENSG00000244383.2] WARNING, no entry stored in dbm for [ENSG00000175772.11] WARNING, no entry stored in dbm for [ENSG00000285957.1] WARNING, no entry stored in dbm for [ENSG00000224875.2] WARNING, no entry stored in dbm for [ENSG00000230530.2] WARNING, no entry stored in dbm for [ENSG00000259683.1] WARNING, no entry stored in dbm for [ENSG00000213130.3] WARNING, no entry stored in dbm for [ENSG00000185904.12] WARNING, no entry stored in dbm for [ENSG00000283132.1] WARNING, no entry stored in dbm for [ENSG00000215908.10] WARNING, no entry stored in dbm for [ENSG00000224888.4] WARNING, no entry stored in dbm for [ENSG00000242193.11] WARNING, no entry stored in dbm for [ENSG00000234323.8] WARNING, no entry stored in dbm for [ENSG00000272914.1] WARNING, no entry stored in dbm for [ENSG00000260750.7] WARNING, no entry stored in dbm for [ENSG00000259755.1] WARNING, no entry stored in dbm for [ENSG00000234661.2] WARNING, no entry stored in dbm for [ENSG00000260807.7] WARNING, no entry stored in dbm for [ENSG00000274993.1] WARNING, no entry stored in dbm for [ENSG00000261799.1] WARNING, no entry stored in dbm for [ENSG00000223773.7] WARNING, no entry stored in dbm for [ENSG00000215117.6] WARNING, no entry stored in dbm for [ENSG00000154874.15] WARNING, no entry stored in dbm for [ENSG00000249375.8] WARNING, no entry stored in dbm for [ENSG00000277837.1] WARNING, no entry stored in dbm for [ENSG00000200434.1] WARNING, no entry stored in dbm for [ENSG00000215386.13] WARNING, no entry stored in dbm for [ENSG00000233874.2] WARNING, no entry stored in dbm for [ENSG00000225670.4] WARNING, no entry stored in dbm for [ENSG00000224750.6] WARNING, no entry stored in dbm for [ENSG00000261734.1] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000185710.9] WARNING, no entry stored in dbm for [ENSG00000279022.1] WARNING, no entry stored in dbm for [ENSG00000244198.7] WARNING, no entry stored in dbm for [ENSG00000280587.1] WARNING, no entry stored in dbm for [ENSG00000287709.1] WARNING, no entry stored in dbm for [ENSG00000272078.1] WARNING, no entry stored in dbm for [ENSG00000284639.1] WARNING, no entry stored in dbm for [ENSG00000232677.9] WARNING, no entry stored in dbm for [ENSG00000255191.1] WARNING, no entry stored in dbm for [ENSG00000255191.1] WARNING, no entry stored in dbm for [ENSG00000231811.3] WARNING, no entry stored in dbm for [ENSG00000254990.5] WARNING, no entry stored in dbm for [ENSG00000279742.1] WARNING, no entry stored in dbm for [ENSG00000235142.10] WARNING, no entry stored in dbm for [ENSG00000237037.9] WARNING, no entry stored in dbm for [ENSG00000261028.1] WARNING, no entry stored in dbm for [ENSG00000228980.4] WARNING, no entry stored in dbm for [ENSG00000231259.5] WARNING, no entry stored in dbm for [ENSG00000266931.2] WARNING, no entry stored in dbm for [ENSG00000285799.1] WARNING, no entry stored in dbm for [ENSG00000270780.1] WARNING, no entry stored in dbm for [ENSG00000234589.4] WARNING, no entry stored in dbm for [ENSG00000218426.5] WARNING, no entry stored in dbm for [ENSG00000266891.1] WARNING, no entry stored in dbm for [ENSG00000234640.1] WARNING, no entry stored in dbm for [ENSG00000286313.1] WARNING, no entry stored in dbm for [ENSG00000227683.1] WARNING, no entry stored in dbm for [ENSG00000278531.1] WARNING, no entry stored in dbm for [ENSG00000277496.1] WARNING, no entry stored in dbm for [ENSG00000246203.2] WARNING, no entry stored in dbm for [ENSG00000246203.2] WARNING, no entry stored in dbm for [ENSG00000230074.3] WARNING, no entry stored in dbm for [ENSG00000226842.1] WARNING, no entry stored in dbm for [ENSG00000236777.1] WARNING, no entry stored in dbm for [ENSG00000224858.5] WARNING, no entry stored in dbm for [ENSG00000283773.1] WARNING, no entry stored in dbm for [ENSG00000287449.1] WARNING, no entry stored in dbm for [ENSG00000283078.1] WARNING, no entry stored in dbm for [ENSG00000227220.1] WARNING, no entry stored in dbm for [ENSG00000236166.1] WARNING, no entry stored in dbm for [ENSG00000224271.7] WARNING, no entry stored in dbm for [ENSG00000227486.2] WARNING, no entry stored in dbm for [ENSG00000288543.1] WARNING, no entry stored in dbm for [ENSG00000260702.3] WARNING, no entry stored in dbm for [ENSG00000188681.11] WARNING, no entry stored in dbm for [ENSG00000232600.3] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no entry stored in dbm for [ENSG00000224016.2] WARNING, no entry stored in dbm for [ENSG00000259591.2] WARNING, no entry stored in dbm for [ENSG00000287979.1] WARNING, no entry stored in dbm for [ENSG00000279047.4] WARNING, no entry stored in dbm for [ENSG00000277089.4] WARNING, no entry stored in dbm for [ENSG00000284964.1] WARNING, no entry stored in dbm for [ENSG00000284964.1] WARNING, no entry stored in dbm for [ENSG00000261499.2] WARNING, no entry stored in dbm for [ENSG00000277125.1] WARNING, no entry stored in dbm for [ENSG00000277125.1] WARNING, no entry stored in dbm for [ENSG00000246465.1] WARNING, no entry stored in dbm for [ENSG00000257322.6] WARNING, no entry stored in dbm for [ENSG00000256663.1] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000242479.1] WARNING, no entry stored in dbm for [ENSG00000224479.6] WARNING, no entry stored in dbm for [ENSG00000286436.1] WARNING, no entry stored in dbm for [ENSG00000241860.7] WARNING, no entry stored in dbm for [ENSG00000272202.1] WARNING, no entry stored in dbm for [ENSG00000279749.1] WARNING, no entry stored in dbm for [ENSG00000282057.1] WARNING, no entry stored in dbm for [ENSG00000285331.2] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000204745.4] WARNING, no entry stored in dbm for [ENSG00000227061.2] WARNING, no entry stored in dbm for [ENSG00000242299.1] WARNING, no entry stored in dbm for [ENSG00000249072.1] WARNING, no entry stored in dbm for [ENSG00000248738.6] WARNING, no entry stored in dbm for [ENSG00000238018.2] WARNING, no entry stored in dbm for [ENSG00000259945.1] WARNING, no entry stored in dbm for [ENSG00000254728.1] WARNING, no entry stored in dbm for [ENSG00000257817.2] WARNING, no entry stored in dbm for [ENSG00000188002.10] WARNING, no entry stored in dbm for [ENSG00000287677.2] WARNING, no entry stored in dbm for [ENSG00000255621.1] WARNING, no entry stored in dbm for [ENSG00000285600.1] WARNING, no entry stored in dbm for [ENSG00000268047.1] WARNING, no entry stored in dbm for [ENSG00000267383.7] WARNING, no entry stored in dbm for [ENSG00000267589.1] WARNING, no entry stored in dbm for [ENSG00000238045.9] WARNING, no entry stored in dbm for [ENSG00000279583.1] WARNING, no entry stored in dbm for [ENSG00000258186.2] WARNING, no entry stored in dbm for [ENSG00000214331.8] WARNING, no entry stored in dbm for [ENSG00000260905.1] WARNING, no entry stored in dbm for [ENSG00000280257.1] WARNING, no entry stored in dbm for [ENSG00000236531.2] WARNING, no entry stored in dbm for [ENSG00000241057.2] WARNING, no entry stored in dbm for [ENSG00000254610.3] WARNING, no entry stored in dbm for [ENSG00000253796.2] WARNING, no entry stored in dbm for [ENSG00000277283.1] WARNING, no entry stored in dbm for [ENSG00000237974.1] WARNING, no entry stored in dbm for [ENSG00000251474.6] WARNING, no entry stored in dbm for [ENSG00000251595.7] WARNING, no entry stored in dbm for [ENSG00000173077.16] * STAR-Fusion complete. See output: /tmp/nxf.2KRvRuK8kC/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)