.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/124b990cb4b98a5fcc287d83845fd6/.command.sh
Size: 203 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.md.bam" > BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3_full_bam_saturation_values.txt