Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/aff892b5722c4181c189c13f13f9ee/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/e89bdb9758872dc1a73eb3ee33b840/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/e89bdb9758872dc1a73eb3ee33b840/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f7eac30f71938caea080e29b361cf3/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3/abundance.h5
Successfully converted BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3/abundance.h5 to BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3
  Mean Fragment Length: 131.1 bp
  Median Fragment Length: 125.0 bp
  pct_mito_est_counts: 0.002%
  pct_ribo_est_counts: 0.73%
  pct_hk_est_counts: 0.414%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.004%
  pct_ribo_tpm: 2.409%
  pct_hk_tpm: 0.668%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.438%