File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/a79ec63845a3466888c8b2855c97d7/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/a79ec63845a3466888c8b2855c97d7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/a79ec63845a3466888c8b2855c97d7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/241519451e3871f511fcc9dab4c960/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/caac4344ccacb4af0fd3bf313c006f/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2/abundance.h5
Successfully converted BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2/abundance.h5 to BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2
  Mean Fragment Length: 120.8 bp
  Median Fragment Length: 115.0 bp
  pct_mito_est_counts: 0.008%
  pct_ribo_est_counts: 0.941%
  pct_hk_est_counts: 0.421%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.016%
  pct_ribo_tpm: 2.916%
  pct_hk_tpm: 0.654%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.043%