AIH curated blacklist: matched 4 fusion rows (breakpoint_ID in qualified set)
================================================================================
ARRIBA FILTERING SUMMARY
================================================================================
Total fusions: 54
Pass (FILTER=PASS): 2 (3.7%)
Fail (FILTER=FAIL): 52 (96.3%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 4
All 4 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 13
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 8
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 2
confidence_below_min(medium<high);aih_curated_blacklist: 2
confidence_below_min(low<high): 2
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 1
total_reads_below_min(6.0<8.0);aih_curated_blacklist: 1
total_reads_below_min(4.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(6.0<8.0);aih_curated_blacklist: 1
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 1
Breakdown by confidence:
high: 2 pass, 2 fail (total: 4)
low: 0 pass, 21 fail (total: 21)
medium: 0 pass, 29 fail (total: 29)
Arriba filter: 54 rows -> 2 PASS; wrote BVT_FFPE_TRNA_thy_01_A23WKFTLT4_3.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_thy_01_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_thy_01_A23WKFTLT4_3.arriba.fusions.filter_summary.txt