AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 155
Pass (FILTER=PASS): 9 (5.8%)
Fail (FILTER=FAIL): 146 (94.2%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 6
All 6 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 37
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 24
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 19
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 13
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 12
confidence_below_min(low<high): 6
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3
confidence_below_min(low<high);aih_curated_blacklist: 3
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2
Breakdown by confidence:
high: 9 pass, 2 fail (total: 11)
low: 0 pass, 61 fail (total: 61)
medium: 0 pass, 83 fail (total: 83)
Arriba filter: 155 rows -> 9 PASS; wrote BVT_FFPE_TRNA_bst_06_A23WKFTLT4_3.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_bst_06_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_bst_06_A23WKFTLT4_3.arriba.fusions.filter_summary.txt