AIH curated blacklist: matched 4 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 97
Pass (FILTER=PASS): 15 (15.5%)
Fail (FILTER=FAIL): 82 (84.5%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 4
All 4 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 14
confidence_below_min(medium<high): 10
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 6
total_reads_below_min(7.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 4
confidence_below_min(low<high): 4
total_reads_below_min(5.0<8.0): 3
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
total_reads_below_min(4.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
Breakdown by confidence:
high: 15 pass, 10 fail (total: 25)
low: 0 pass, 39 fail (total: 39)
medium: 0 pass, 33 fail (total: 33)
Arriba filter: 97 rows -> 15 PASS; wrote BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2.arriba.fusions.filter_summary.txt