Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e7f35d528c39b5d8ea554f0c467c52/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/9c6e9cc7b4449da6cb0e51f40dd655/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e7f35d528c39b5d8ea554f0c467c52/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
Processed 267000000 records
Processed 268000000 records
Processed 269000000 records
Processed 270000000 records
Processed 271000000 records
Processed 272000000 records
Processed 273000000 records
Processed 274000000 records
Processed 275000000 records
Processed 276000000 records
Processed 277000000 records
Processed 278000000 records
Processed 279000000 records
Processed 280000000 records
Processed 281000000 records
Processed 282000000 records
Processed 283000000 records
Processed 284000000 records
Processed 285000000 records
Processed 286000000 records
Processed 287000000 records
Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
Processed 291000000 records
Processed 292000000 records
Processed 293000000 records
Processed 294000000 records
Processed 295000000 records
Processed 296000000 records
Processed 297000000 records
Processed 298000000 records
Processed 299000000 records
Processed 300000000 records
Processed 301000000 records
Processed 302000000 records
Processed 303000000 records
Processed 304000000 records
Processed 305000000 records
Processed 306000000 records
Processed 307000000 records
Processed 308000000 records
Processed 309000000 records
Processed 310000000 records
Processed 311000000 records
Processed 312000000 records
Processed 313000000 records
Processed 314000000 records
Processed 315000000 records
Processed 316000000 records
Processed 317000000 records
Processed 318000000 records
Processed 319000000 records
Processed 320000000 records
Processed 321000000 records
Processed 322000000 records
Processed 323000000 records
Processed 324000000 records
Processed 325000000 records
Processed 326000000 records
Processed 327000000 records
Processed 328000000 records
Processed 329000000 records
Processed 330000000 records
Processed 331000000 records
Processed 332000000 records
Processed 333000000 records
Processed 334000000 records
Processed 335000000 records
Processed 336000000 records
Processed 337000000 records
Processed 338000000 records
Processed 339000000 records
Processed 340000000 records
Processed 341000000 records
Processed 342000000 records
Processed 343000000 records
Processed 344000000 records
Processed 345000000 records
Processed 346000000 records
Processed 347000000 records
Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
Processed 351000000 records
Processed 352000000 records
Processed 353000000 records
Processed 354000000 records
Processed 355000000 records
Processed 356000000 records
Processed 357000000 records
Processed 358000000 records
Processed 359000000 records
Processed 360000000 records
Processed 361000000 records
Processed 362000000 records
Processed 363000000 records
Processed 364000000 records
Processed 365000000 records
Processed 366000000 records
Processed 367000000 records
Processed 368000000 records
Processed 369000000 records
Processed 370000000 records
Processed 371000000 records
Processed 372000000 records
Processed 373000000 records
Processed 374000000 records
Processed 375000000 records
Processed 376000000 records
Processed 377000000 records
Processed 378000000 records
Processed 379000000 records
Processed 380000000 records
Processed 381000000 records
Processed 382000000 records
Processed 383000000 records
Processed 384000000 records
Processed 385000000 records
Processed 386000000 records
Processed 387000000 records
Processed 388000000 records
Processed 389000000 records
Processed 390000000 records
Processed 391000000 records
Processed 392000000 records
Processed 393000000 records
Processed 394000000 records
Processed 395000000 records
Processed 396000000 records
Processed 397000000 records
Processed 398000000 records
Processed 399000000 records
Processed 400000000 records
Processed 401000000 records
Processed 402000000 records
Processed 403000000 records
Processed 404000000 records
Processed 405000000 records
Processed 406000000 records
Processed 407000000 records
Processed 408000000 records
Processed 409000000 records
Processed 410000000 records
Processed 411000000 records
Processed 412000000 records
Processed 413000000 records
Processed 414000000 records
Processed 415000000 records
Processed 416000000 records
Processed 417000000 records
Processed 418000000 records
Processed 419000000 records
Processed 420000000 records
Processed 421000000 records
Processed 422000000 records
Processed 423000000 records
Processed 424000000 records
Processed 425000000 records
Processed 426000000 records
Processed 427000000 records
Processed 428000000 records
Processed 429000000 records
Processed 430000000 records
Processed 431000000 records
Processed 432000000 records
Processed 433000000 records
Processed 434000000 records
Processed 435000000 records
Processed 436000000 records
Processed 437000000 records
Processed 438000000 records
Processed 439000000 records
Processed 440000000 records
Processed 441000000 records
Processed 442000000 records
Processed 443000000 records
Processed 444000000 records
Processed 445000000 records
Processed 446000000 records
Processed 447000000 records
Processed 448000000 records
Processed 449000000 records
Processed 450000000 records
Processed 451000000 records
Processed 452000000 records
Processed 453000000 records
Processed 454000000 records
Processed 455000000 records
Processed 456000000 records
Processed 457000000 records
Processed 458000000 records
Processed 459000000 records
Processed 460000000 records
Processed 461000000 records
Processed 462000000 records
Processed 463000000 records
Processed 464000000 records
Processed 465000000 records
Processed 466000000 records
Processed 467000000 records
Processed 468000000 records
Processed 469000000 records
Processed 470000000 records
Processed 471000000 records
Processed 472000000 records
Processed 473000000 records
Processed 474000000 records
Processed 475000000 records
Processed 476000000 records
Processed 477000000 records
Processed 478000000 records
Processed 479000000 records
Processed 480000000 records
Processed 481000000 records
Processed 482000000 records
Processed 483000000 records
Processed 484000000 records
Processed 485000000 records
Processed 486000000 records
Processed 487000000 records
Processed 488000000 records
Processed 489000000 records
Processed 490000000 records
Processed 491000000 records
Processed 492000000 records
Processed 493000000 records
Processed 494000000 records
Processed 495000000 records
Processed 496000000 records
Processed 497000000 records
Processed 498000000 records
Processed 499000000 records
Processed 500000000 records
Processed 501000000 records
Processed 502000000 records
Processed 503000000 records
Processed 504000000 records
Processed 505000000 records
Processed 506000000 records
Processed 507000000 records
Processed 508000000 records
Processed 509000000 records
Processed 510000000 records
Processed 511000000 records
Processed 512000000 records
Processed 513000000 records
Processed 514000000 records
Processed 515000000 records
Processed 516000000 records
paired = 255862710
unpaired = 5061581
MERGED PAIRED END READS = 255862710
MATES PROCESSED = 516787001
TOTAL READS = 260924291
DISTINCT READS = 6.41637e+07
DISTINCT COUNTS = 782
MAX COUNT = 1001102
COUNTS OF 1 = 1.71708e+07
MAX TERMS = 100
OBSERVED COUNTS (1001103)
1 17170788
2 11955092
3 9158305
4 6889058
5 5053773
6 3647430
7 2609228
8 1865604
9 1336729
10 969010
11 709377
12 529377
13 402498
14 309306
15 242716
16 194061
17 156070
18 127900
19 104949
20 87983
21 73922
22 62704
23 53299
24 45947
25 39198
26 34165
27 29459
28 26172
29 22744
30 19901
31 17548
32 15803
33 14107
34 12836
35 11423
36 10352
37 9409
38 8798
39 7977
40 7387
41 6700
42 6204
43 5744
44 5237
45 4922
46 4647
47 4175
48 3981
49 3697
50 3492
51 3348
52 3073
53 2845
54 2696
55 2581
56 2438
57 2237
58 2119
59 1983
60 1852
61 1827
62 1694
63 1528
64 1516
65 1471
66 1312
67 1275
68 1225
69 1208
70 1103
71 1050
72 1062
73 973
74 893
75 889
76 827
77 838
78 836
79 753
80 713
81 677
82 682
83 627
84 621
85 572
86 572
87 499
88 514
89 513
90 516
91 493
92 462
93 441
94 387
95 441
96 438
97 377
98 392
99 365
100 363
101 312
102 333
103 284
104 315
105 300
106 312
107 272
108 276
109 253
110 252
111 236
112 250
113 246
114 229
115 235
116 189
117 220
118 199
119 164
120 183
121 205
122 166
123 158
124 169
125 147
126 159
127 151
128 174
129 156
130 121
131 136
132 145
133 114
134 119
135 118
136 110
137 121
138 114
139 117
140 109
141 120
142 105
143 104
144 125
145 100
146 99
147 90
148 91
149 96
150 91
151 79
152 87
153 66
154 82
155 90
156 82
157 82
158 78
159 72
160 61
161 71
162 77
163 66
164 47
165 78
166 56
167 63
168 61
169 47
170 54
171 52
172 60
173 71
174 52
175 56
176 49
177 45
178 56
179 54
180 43
181 45
182 45
183 52
184 43
185 38
186 47
187 42
188 39
189 33
190 35
191 42
192 45
193 34
194 29
195 29
196 30
197 36
198 33
199 33
200 31
201 29
202 36
203 35
204 35
205 34
206 31
207 27
208 37
209 37
210 31
211 28
212 17
213 21
214 22
215 24
216 26
217 20
218 26
219 30
220 33
221 24
222 23
223 23
224 18
225 12
226 19
227 32
228 28
229 26
230 27
231 29
232 19
233 19
234 16
235 16
236 16
237 13
238 17
239 15
240 16
241 24
242 15
243 7
244 18
245 16
246 9
247 21
248 12
249 14
250 21
251 17
252 13
253 16
254 15
255 12
256 9
257 20
258 15
259 13
260 10
261 17
262 10
263 10
264 14
265 12
266 14
267 8
268 11
269 21
270 7
271 15
272 10
273 16
274 12
275 13
276 16
277 5
278 9
279 13
280 11
281 14
282 13
283 12
284 8
285 12
286 13
287 14
288 8
289 13
290 10
291 11
292 15
293 12
294 8
295 10
296 11
297 9
298 3
299 10
300 6
301 12
302 5
303 7
304 6
306 6
307 12
308 5
309 4
310 13
311 11
312 6
313 7
314 10
315 7
316 14
317 8
318 3
319 2
320 6
321 11
322 3
323 3
324 3
325 12
326 7
327 9
328 1
329 2
330 6
331 5
332 7
333 4
334 3
335 4
336 4
337 9
338 4
339 6
340 4
341 5
342 5
343 8
344 5
345 4
346 3
347 3
348 5
349 7
350 5
351 3
352 2
354 7
355 3
356 4
357 4
358 6
359 6
360 4
361 6
362 2
363 6
364 6
365 4
366 1
367 6
368 1
369 4
370 1
371 3
372 2
373 4
374 6
375 4
376 3
377 3
378 5
379 1
380 3
381 5
382 6
383 6
384 2
385 4
386 2
387 2
388 4
389 2
390 2
391 3
392 3
393 4
394 4
395 4
396 5
398 4
399 2
400 1
401 3
402 3
405 2
406 2
407 5
408 1
409 2
410 3
411 2
412 1
413 3
414 4
415 4
416 2
417 6
418 1
419 3
420 1
421 3
422 3
423 2
424 2
425 1
426 1
427 1
428 2
429 2
430 2
431 4
432 2
433 2
434 2
435 4
436 2
437 4
438 2
439 1
440 4
441 3
442 3
443 2
444 2
445 3
446 1
447 1
449 1
450 2
451 3
452 1
453 3
454 3
455 5
456 3
457 1
458 1
459 1
460 1
461 4
462 1
464 1
465 2
466 2
467 3
468 2
470 1
471 4
472 1
473 1
474 2
475 1
476 1
477 1
478 2
479 3
480 3
482 3
483 2
484 1
485 1
488 1
489 1
490 1
492 4
493 1
494 2
496 2
497 1
498 1
499 1
500 1
501 1
502 1
503 3
504 3
505 2
506 1
507 3
508 1
509 1
511 2
513 2
514 1
515 2
516 1
517 1
518 1
519 2
520 1
521 1
522 4
524 2
525 1
526 1
527 3
528 2
529 1
530 1
531 2
532 1
533 1
534 3
536 1
538 1
539 2
541 1
543 1
544 1
546 2
549 1
550 1
551 1
554 2
557 1
560 2
561 1
562 1
564 1
565 1
567 1
568 1
571 2
574 2
576 1
577 1
578 1
579 1
580 1
583 1
584 1
585 1
587 1
589 2
590 1
591 1
592 2
593 1
594 1
595 1
599 1
600 2
602 1
603 1
604 1
608 1
609 5
610 2
615 1
616 1
619 1
625 1
629 1
632 1
633 2
634 1
637 2
638 1
639 2
640 2
641 1
644 1
647 1
649 2
650 1
651 1
653 1
654 1
655 4
659 1
660 1
661 1
662 1
664 2
667 2
668 1
669 1
670 1
675 1
679 2
680 2
683 1
684 3
685 1
687 1
688 1
692 1
694 1
697 1
698 2
699 1
700 2
701 1
704 2
707 2
708 1
715 1
717 1
718 2
723 1
726 1
727 1
728 1
730 1
738 1
743 1
751 1
763 1
764 1
769 1
774 2
777 1
785 1
789 1
792 1
794 1
796 1
799 1
801 1
802 1
803 2
807 1
808 1
809 1
818 2
821 1
822 1
824 1
829 1
831 1
836 1
838 1
841 2
844 1
846 1
848 3
864 1
869 1
877 1
886 1
893 1
910 2
914 1
940 1
945 1
952 1
961 1
965 1
978 1
997 1
998 1
1006 1
1012 1
1019 1
1037 1
1046 1
1059 1
1068 1
1099 1
1109 2
1111 1
1124 1
1138 1
1145 1
1157 1
1197 1
1208 1
1218 1
1219 1
1226 1
1229 1
1246 1
1249 1
1254 1
1269 1
1282 1
1298 2
1309 1
1320 1
1324 1
1348 1
1359 1
1367 1
1378 1
1388 1
1398 1
1418 1
1421 1
1423 1
1442 1
1448 1
1449 1
1450 1
1451 2
1463 1
1473 1
1492 1
1512 1
1514 1
1530 1
1537 1
1546 1
1550 1
1558 1
1572 1
1599 1
1618 1
1649 1
1657 1
1672 1
1676 1
1693 1
1709 1
1710 1
1717 1
1727 1
1731 1
1737 1
1774 1
1782 1
1787 1
1818 1
1829 1
1843 1
1861 1
1862 1
1868 1
1884 1
1897 1
1912 1
1918 1
1954 1
1966 1
1967 1
1984 1
2015 1
2028 1
2077 1
2085 1
2132 1
2168 2
2201 1
2215 1
2262 1
2295 1
2303 1
2328 1
2330 1
2385 1
2439 1
2458 1
2527 1
2556 1
2657 1
2805 1
2970 1
2978 1
3230 1
3351 1
3698 1
4486 1
5443 1
5719 1
6116 1
6740 1
26482 1
1001102 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._..__.._........._..._._._......_.._.._....._...._.._........_...._..
.._.........___._._.___...__......_......_..._..._..._......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]