Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e7f35d528c39b5d8ea554f0c467c52/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/9c6e9cc7b4449da6cb0e51f40dd655/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e7f35d528c39b5d8ea554f0c467c52/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records Processed 487000000 records Processed 488000000 records Processed 489000000 records Processed 490000000 records Processed 491000000 records Processed 492000000 records Processed 493000000 records Processed 494000000 records Processed 495000000 records Processed 496000000 records Processed 497000000 records Processed 498000000 records Processed 499000000 records Processed 500000000 records Processed 501000000 records Processed 502000000 records Processed 503000000 records Processed 504000000 records Processed 505000000 records Processed 506000000 records Processed 507000000 records Processed 508000000 records Processed 509000000 records Processed 510000000 records Processed 511000000 records Processed 512000000 records Processed 513000000 records Processed 514000000 records Processed 515000000 records Processed 516000000 records paired = 255862710 unpaired = 5061581 MERGED PAIRED END READS = 255862710 MATES PROCESSED = 516787001 TOTAL READS = 260924291 DISTINCT READS = 6.41637e+07 DISTINCT COUNTS = 782 MAX COUNT = 1001102 COUNTS OF 1 = 1.71708e+07 MAX TERMS = 100 OBSERVED COUNTS (1001103) 1 17170788 2 11955092 3 9158305 4 6889058 5 5053773 6 3647430 7 2609228 8 1865604 9 1336729 10 969010 11 709377 12 529377 13 402498 14 309306 15 242716 16 194061 17 156070 18 127900 19 104949 20 87983 21 73922 22 62704 23 53299 24 45947 25 39198 26 34165 27 29459 28 26172 29 22744 30 19901 31 17548 32 15803 33 14107 34 12836 35 11423 36 10352 37 9409 38 8798 39 7977 40 7387 41 6700 42 6204 43 5744 44 5237 45 4922 46 4647 47 4175 48 3981 49 3697 50 3492 51 3348 52 3073 53 2845 54 2696 55 2581 56 2438 57 2237 58 2119 59 1983 60 1852 61 1827 62 1694 63 1528 64 1516 65 1471 66 1312 67 1275 68 1225 69 1208 70 1103 71 1050 72 1062 73 973 74 893 75 889 76 827 77 838 78 836 79 753 80 713 81 677 82 682 83 627 84 621 85 572 86 572 87 499 88 514 89 513 90 516 91 493 92 462 93 441 94 387 95 441 96 438 97 377 98 392 99 365 100 363 101 312 102 333 103 284 104 315 105 300 106 312 107 272 108 276 109 253 110 252 111 236 112 250 113 246 114 229 115 235 116 189 117 220 118 199 119 164 120 183 121 205 122 166 123 158 124 169 125 147 126 159 127 151 128 174 129 156 130 121 131 136 132 145 133 114 134 119 135 118 136 110 137 121 138 114 139 117 140 109 141 120 142 105 143 104 144 125 145 100 146 99 147 90 148 91 149 96 150 91 151 79 152 87 153 66 154 82 155 90 156 82 157 82 158 78 159 72 160 61 161 71 162 77 163 66 164 47 165 78 166 56 167 63 168 61 169 47 170 54 171 52 172 60 173 71 174 52 175 56 176 49 177 45 178 56 179 54 180 43 181 45 182 45 183 52 184 43 185 38 186 47 187 42 188 39 189 33 190 35 191 42 192 45 193 34 194 29 195 29 196 30 197 36 198 33 199 33 200 31 201 29 202 36 203 35 204 35 205 34 206 31 207 27 208 37 209 37 210 31 211 28 212 17 213 21 214 22 215 24 216 26 217 20 218 26 219 30 220 33 221 24 222 23 223 23 224 18 225 12 226 19 227 32 228 28 229 26 230 27 231 29 232 19 233 19 234 16 235 16 236 16 237 13 238 17 239 15 240 16 241 24 242 15 243 7 244 18 245 16 246 9 247 21 248 12 249 14 250 21 251 17 252 13 253 16 254 15 255 12 256 9 257 20 258 15 259 13 260 10 261 17 262 10 263 10 264 14 265 12 266 14 267 8 268 11 269 21 270 7 271 15 272 10 273 16 274 12 275 13 276 16 277 5 278 9 279 13 280 11 281 14 282 13 283 12 284 8 285 12 286 13 287 14 288 8 289 13 290 10 291 11 292 15 293 12 294 8 295 10 296 11 297 9 298 3 299 10 300 6 301 12 302 5 303 7 304 6 306 6 307 12 308 5 309 4 310 13 311 11 312 6 313 7 314 10 315 7 316 14 317 8 318 3 319 2 320 6 321 11 322 3 323 3 324 3 325 12 326 7 327 9 328 1 329 2 330 6 331 5 332 7 333 4 334 3 335 4 336 4 337 9 338 4 339 6 340 4 341 5 342 5 343 8 344 5 345 4 346 3 347 3 348 5 349 7 350 5 351 3 352 2 354 7 355 3 356 4 357 4 358 6 359 6 360 4 361 6 362 2 363 6 364 6 365 4 366 1 367 6 368 1 369 4 370 1 371 3 372 2 373 4 374 6 375 4 376 3 377 3 378 5 379 1 380 3 381 5 382 6 383 6 384 2 385 4 386 2 387 2 388 4 389 2 390 2 391 3 392 3 393 4 394 4 395 4 396 5 398 4 399 2 400 1 401 3 402 3 405 2 406 2 407 5 408 1 409 2 410 3 411 2 412 1 413 3 414 4 415 4 416 2 417 6 418 1 419 3 420 1 421 3 422 3 423 2 424 2 425 1 426 1 427 1 428 2 429 2 430 2 431 4 432 2 433 2 434 2 435 4 436 2 437 4 438 2 439 1 440 4 441 3 442 3 443 2 444 2 445 3 446 1 447 1 449 1 450 2 451 3 452 1 453 3 454 3 455 5 456 3 457 1 458 1 459 1 460 1 461 4 462 1 464 1 465 2 466 2 467 3 468 2 470 1 471 4 472 1 473 1 474 2 475 1 476 1 477 1 478 2 479 3 480 3 482 3 483 2 484 1 485 1 488 1 489 1 490 1 492 4 493 1 494 2 496 2 497 1 498 1 499 1 500 1 501 1 502 1 503 3 504 3 505 2 506 1 507 3 508 1 509 1 511 2 513 2 514 1 515 2 516 1 517 1 518 1 519 2 520 1 521 1 522 4 524 2 525 1 526 1 527 3 528 2 529 1 530 1 531 2 532 1 533 1 534 3 536 1 538 1 539 2 541 1 543 1 544 1 546 2 549 1 550 1 551 1 554 2 557 1 560 2 561 1 562 1 564 1 565 1 567 1 568 1 571 2 574 2 576 1 577 1 578 1 579 1 580 1 583 1 584 1 585 1 587 1 589 2 590 1 591 1 592 2 593 1 594 1 595 1 599 1 600 2 602 1 603 1 604 1 608 1 609 5 610 2 615 1 616 1 619 1 625 1 629 1 632 1 633 2 634 1 637 2 638 1 639 2 640 2 641 1 644 1 647 1 649 2 650 1 651 1 653 1 654 1 655 4 659 1 660 1 661 1 662 1 664 2 667 2 668 1 669 1 670 1 675 1 679 2 680 2 683 1 684 3 685 1 687 1 688 1 692 1 694 1 697 1 698 2 699 1 700 2 701 1 704 2 707 2 708 1 715 1 717 1 718 2 723 1 726 1 727 1 728 1 730 1 738 1 743 1 751 1 763 1 764 1 769 1 774 2 777 1 785 1 789 1 792 1 794 1 796 1 799 1 801 1 802 1 803 2 807 1 808 1 809 1 818 2 821 1 822 1 824 1 829 1 831 1 836 1 838 1 841 2 844 1 846 1 848 3 864 1 869 1 877 1 886 1 893 1 910 2 914 1 940 1 945 1 952 1 961 1 965 1 978 1 997 1 998 1 1006 1 1012 1 1019 1 1037 1 1046 1 1059 1 1068 1 1099 1 1109 2 1111 1 1124 1 1138 1 1145 1 1157 1 1197 1 1208 1 1218 1 1219 1 1226 1 1229 1 1246 1 1249 1 1254 1 1269 1 1282 1 1298 2 1309 1 1320 1 1324 1 1348 1 1359 1 1367 1 1378 1 1388 1 1398 1 1418 1 1421 1 1423 1 1442 1 1448 1 1449 1 1450 1 1451 2 1463 1 1473 1 1492 1 1512 1 1514 1 1530 1 1537 1 1546 1 1550 1 1558 1 1572 1 1599 1 1618 1 1649 1 1657 1 1672 1 1676 1 1693 1 1709 1 1710 1 1717 1 1727 1 1731 1 1737 1 1774 1 1782 1 1787 1 1818 1 1829 1 1843 1 1861 1 1862 1 1868 1 1884 1 1897 1 1912 1 1918 1 1954 1 1966 1 1967 1 1984 1 2015 1 2028 1 2077 1 2085 1 2132 1 2168 2 2201 1 2215 1 2262 1 2295 1 2303 1 2328 1 2330 1 2385 1 2439 1 2458 1 2527 1 2556 1 2657 1 2805 1 2970 1 2978 1 3230 1 3351 1 3698 1 4486 1 5443 1 5719 1 6116 1 6740 1 26482 1 1001102 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ..._..__.._........._..._._._......_.._.._....._...._.._........_...._.. .._.........___._._.___...__......_......_..._..._..._...... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]