Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/18f9e73f4cb835697ebe33e4b6e20f/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/bca9815049309e87d2746796edab9b/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/c01f2fd53c2f1f8207b06e685e9717/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/bca9815049309e87d2746796edab9b/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
NARS2--GAB2
starfusion
arriba
EXOC2--EPHA5
starfusion
arriba
RIC1--FMNL1
starfusion
arriba
ZSCAN22--WWC3
starfusion
arriba
C22orf39--MYO18B-AS1
starfusion
arriba
AC092070.2--MAN2B1
starfusion
arriba
MSI2--CLTC
starfusion
arriba
DAD1--RNF212B
starfusion
DOK7--MICB
arriba
SH3BGRL--AL356585.4(1588162)
arriba
BMP2K--BMP2K
arriba
MYLIP--MTCO3P28
arriba
MYLIP--AC104689.1
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
ZNF525--AC007786.2
arriba
ZNF525--AC007786.3
arriba
0%| | 0/18 [00:00<?, ?it/s]
Processing NARS2--GAB2: 0%| | 0/18 [00:00<?, ?it/s]
Processing NARS2--GAB2: 6%|▌ | 1/18 [00:00<00:01, 9.07it/s]
Processing EXOC2--EPHA5: 6%|▌ | 1/18 [00:00<00:01, 9.07it/s]
Processing EXOC2--EPHA5: 11%|█ | 2/18 [00:00<00:01, 9.37it/s]
Processing RIC1--FMNL1: 11%|█ | 2/18 [00:00<00:01, 9.37it/s]
Processing RIC1--FMNL1: 17%|█▋ | 3/18 [00:00<00:01, 9.47it/s]
Processing ZSCAN22--WWC3: 17%|█▋ | 3/18 [00:00<00:01, 9.47it/s]
Processing ZSCAN22--WWC3: 22%|██▏ | 4/18 [00:00<00:01, 9.50it/s]
Processing C22orf39--MYO18B-AS1: 22%|██▏ | 4/18 [00:00<00:01, 9.50it/s]
Processing C22orf39--MYO18B-AS1: 28%|██▊ | 5/18 [00:00<00:01, 9.52it/s]
Processing AC092070.2--MAN2B1: 28%|██▊ | 5/18 [00:00<00:01, 9.52it/s]
Processing AC092070.2--MAN2B1: 33%|███▎ | 6/18 [00:00<00:01, 9.55it/s]
Processing MSI2--CLTC: 33%|███▎ | 6/18 [00:00<00:01, 9.55it/s]
Processing MSI2--CLTC: 39%|███▉ | 7/18 [00:00<00:01, 9.55it/s]
Processing DAD1--RNF212B: 39%|███▉ | 7/18 [00:00<00:01, 9.55it/s]
Processing DAD1--RNF212B: 44%|████▍ | 8/18 [00:00<00:01, 9.54it/s]
Processing DOK7--MICB: 44%|████▍ | 8/18 [00:00<00:01, 9.54it/s]
Processing DOK7--MICB: 50%|█████ | 9/18 [00:00<00:00, 9.55it/s]
Processing SH3BGRL--AL356585.4(1588162): 50%|█████ | 9/18 [00:00<00:00, 9.55it/s]
Processing SH3BGRL--AL356585.4(1588162): 56%|█████▌ | 10/18 [00:01<00:00, 9.56it/s]
Processing BMP2K--BMP2K: 56%|█████▌ | 10/18 [00:01<00:00, 9.56it/s]
Processing BMP2K--BMP2K: 61%|██████ | 11/18 [00:01<00:00, 9.57it/s]
Processing MYLIP--MTCO3P28: 61%|██████ | 11/18 [00:01<00:00, 9.57it/s]
Processing MYLIP--MTCO3P28: 67%|██████▋ | 12/18 [00:01<00:00, 9.56it/s]
Processing MYLIP--AC104689.1: 67%|██████▋ | 12/18 [00:01<00:00, 9.56it/s]
Processing MYLIP--AC104689.1: 72%|███████▏ | 13/18 [00:01<00:00, 9.57it/s]
Processing PCDHA4--PCDHAC1: 72%|███████▏ | 13/18 [00:01<00:00, 9.57it/s]
Processing PCDHA4--PCDHAC1: 78%|███████▊ | 14/18 [00:01<00:00, 9.55it/s]
Processing PCDHA4--PCDHAC2: 78%|███████▊ | 14/18 [00:01<00:00, 9.55it/s]
Processing PCDHA4--PCDHAC2: 83%|████████▎ | 15/18 [00:01<00:00, 9.53it/s]
Processing PCDHA4--PCDHA13: 83%|████████▎ | 15/18 [00:01<00:00, 9.53it/s]
Processing PCDHA4--PCDHA13: 89%|████████▉ | 16/18 [00:01<00:00, 9.54it/s]
Processing ZNF525--AC007786.2: 89%|████████▉ | 16/18 [00:01<00:00, 9.54it/s]
Processing ZNF525--AC007786.2: 94%|█████████▍| 17/18 [00:01<00:00, 9.55it/s]
Processing ZNF525--AC007786.3: 94%|█████████▍| 17/18 [00:01<00:00, 9.55it/s]
Processing ZNF525--AC007786.3: 100%|██████████| 18/18 [00:01<00:00, 9.55it/s]
Processing ZNF525--AC007786.3: 100%|██████████| 18/18 [00:01<00:00, 9.53it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory