File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/7e620fd7e2fcfff1f3b23f6464db22/.command.log
Size
5.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/7e620fd7e2fcfff1f3b23f6464db22/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/7e620fd7e2fcfff1f3b23f6464db22/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/dba9d6e56df9ebd5a23eb6dc9d12e4/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/84dd70163f55aa3ab1457040a221dd/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/23 [00:00<?, ?it/s]LANCL2--AC011228.1
starfusion
arriba
MIR34AHG--QKI
starfusion
arriba
YKT6--COBL
starfusion
AC004951.2--COBL
starfusion
RERE--CAMTA1
starfusion
arriba
ENDOV--RNF213
starfusion
arriba
TLK2--AC240565.1
starfusion
POLR2J4--UPK3BL1
starfusion
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC3
arriba
LANCL2--RNU6-1125P
arriba
COBL--NPC1L1
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba

Processing LANCL2--AC011228.1:   0%|          | 0/23 [00:00<?, ?it/s]
Processing LANCL2--AC011228.1:   4%|▍         | 1/23 [00:00<00:02,  9.20it/s]
Processing MIR34AHG--QKI:   4%|▍         | 1/23 [00:00<00:02,  9.20it/s]     
Processing MIR34AHG--QKI:   9%|▊         | 2/23 [00:00<00:02,  9.36it/s]
Processing YKT6--COBL:   9%|▊         | 2/23 [00:00<00:02,  9.36it/s]   
Processing YKT6--COBL:  13%|█▎        | 3/23 [00:00<00:02,  9.41it/s]
Processing AC004951.2--COBL:  13%|█▎        | 3/23 [00:00<00:02,  9.41it/s]
Processing AC004951.2--COBL:  17%|█▋        | 4/23 [00:00<00:02,  9.44it/s]
Processing RERE--CAMTA1:  17%|█▋        | 4/23 [00:00<00:02,  9.44it/s]    
Processing RERE--CAMTA1:  22%|██▏       | 5/23 [00:00<00:01,  9.45it/s]
Processing ENDOV--RNF213:  22%|██▏       | 5/23 [00:00<00:01,  9.45it/s]
Processing ENDOV--RNF213:  26%|██▌       | 6/23 [00:00<00:01,  9.46it/s]
Processing TLK2--AC240565.1:  26%|██▌       | 6/23 [00:00<00:01,  9.46it/s]
Processing TLK2--AC240565.1:  30%|███       | 7/23 [00:00<00:01,  9.46it/s]
Processing POLR2J4--UPK3BL1:  30%|███       | 7/23 [00:00<00:01,  9.46it/s]
Processing POLR2J4--UPK3BL1:  35%|███▍      | 8/23 [00:00<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGB6:  35%|███▍      | 8/23 [00:00<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGB6:  39%|███▉      | 9/23 [00:00<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA8:  39%|███▉      | 9/23 [00:00<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA8:  43%|████▎     | 10/23 [00:01<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA10:  43%|████▎     | 10/23 [00:01<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA10:  48%|████▊     | 11/23 [00:01<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA11:  48%|████▊     | 11/23 [00:01<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA11:  52%|█████▏    | 12/23 [00:01<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA12:  52%|█████▏    | 12/23 [00:01<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA12:  57%|█████▋    | 13/23 [00:01<00:01,  9.48it/s]
Processing PCDHGB2--PCDHGC4:  57%|█████▋    | 13/23 [00:01<00:01,  9.48it/s] 
Processing PCDHGB2--PCDHGC4:  61%|██████    | 14/23 [00:01<00:00,  9.47it/s]
Processing PCDHGB2--PCDHGB7:  61%|██████    | 14/23 [00:01<00:00,  9.47it/s]
Processing PCDHGB2--PCDHGB7:  65%|██████▌   | 15/23 [00:01<00:00,  9.48it/s]
Processing PCDHGB2--PCDHGA9:  65%|██████▌   | 15/23 [00:01<00:00,  9.48it/s]
Processing PCDHGB2--PCDHGA9:  70%|██████▉   | 16/23 [00:01<00:00,  9.48it/s]
Processing PCDHGB2--PCDHGC5:  70%|██████▉   | 16/23 [00:01<00:00,  9.48it/s]
Processing PCDHGB2--PCDHGC5:  74%|███████▍  | 17/23 [00:01<00:00,  9.48it/s]
Processing PCDHGB2--PCDHGC3:  74%|███████▍  | 17/23 [00:01<00:00,  9.48it/s]
Processing PCDHGB2--PCDHGC3:  78%|███████▊  | 18/23 [00:01<00:00,  9.48it/s]
Processing LANCL2--RNU6-1125P:  78%|███████▊  | 18/23 [00:01<00:00,  9.48it/s]
Processing LANCL2--RNU6-1125P:  83%|████████▎ | 19/23 [00:02<00:00,  9.48it/s]
Processing COBL--NPC1L1:  83%|████████▎ | 19/23 [00:02<00:00,  9.48it/s]      
Processing COBL--NPC1L1:  87%|████████▋ | 20/23 [00:02<00:00,  9.47it/s]
Processing PCDHA4--PCDHAC1:  87%|████████▋ | 20/23 [00:02<00:00,  9.47it/s]
Processing PCDHA4--PCDHAC1:  91%|█████████▏| 21/23 [00:02<00:00,  9.47it/s]
Processing PCDHA4--PCDHAC2:  91%|█████████▏| 21/23 [00:02<00:00,  9.47it/s]
Processing PCDHA4--PCDHAC2:  96%|█████████▌| 22/23 [00:02<00:00,  9.47it/s]
Processing PCDHA4--PCDHA13:  96%|█████████▌| 22/23 [00:02<00:00,  9.47it/s]
Processing PCDHA4--PCDHA13: 100%|██████████| 23/23 [00:02<00:00,  9.48it/s]
Processing PCDHA4--PCDHA13: 100%|██████████| 23/23 [00:02<00:00,  9.46it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory