File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/12380d7705533986ecede50d127e8d/.command.log
Size
2.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/dc1bc040542f0b9418e9e2b5489e9f/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/12380d7705533986ecede50d127e8d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/12380d7705533986ecede50d127e8d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/86ebcd53ba281fad68a72597516895/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
FGFR3--TACC3
starfusion
arriba
PPME1--TCF7L2
starfusion
arriba
RBMS1--AFF3
starfusion
arriba
PTBP3--HSDL2
starfusion
arriba
RPN2--PTPRT
arriba
PEDS1--RNU6-639P
arriba
PEDS1--LINC01728
arriba
USP12--MTIF3
arriba
USP12--RNU6-63P
arriba

  0%|          | 0/9 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   0%|          | 0/9 [00:00<?, ?it/s]
Processing FGFR3--TACC3:  11%|█         | 1/9 [00:00<00:00,  9.22it/s]
Processing PPME1--TCF7L2:  11%|█         | 1/9 [00:00<00:00,  9.22it/s]
Processing PPME1--TCF7L2:  22%|██▏       | 2/9 [00:00<00:00,  9.45it/s]
Processing RBMS1--AFF3:  22%|██▏       | 2/9 [00:00<00:00,  9.45it/s]  
Processing RBMS1--AFF3:  33%|███▎      | 3/9 [00:00<00:00,  9.52it/s]
Processing PTBP3--HSDL2:  33%|███▎      | 3/9 [00:00<00:00,  9.52it/s]
Processing PTBP3--HSDL2:  44%|████▍     | 4/9 [00:00<00:00,  9.56it/s]
Processing RPN2--PTPRT:  44%|████▍     | 4/9 [00:00<00:00,  9.56it/s] 
Processing RPN2--PTPRT:  56%|█████▌    | 5/9 [00:00<00:00,  9.58it/s]
Processing PEDS1--RNU6-639P:  56%|█████▌    | 5/9 [00:00<00:00,  9.58it/s]
Processing PEDS1--RNU6-639P:  67%|██████▋   | 6/9 [00:00<00:00,  9.59it/s]
Processing PEDS1--LINC01728:  67%|██████▋   | 6/9 [00:00<00:00,  9.59it/s]
Processing PEDS1--LINC01728:  78%|███████▊  | 7/9 [00:00<00:00,  9.60it/s]
Processing USP12--MTIF3:  78%|███████▊  | 7/9 [00:00<00:00,  9.60it/s]    
Processing USP12--MTIF3:  89%|████████▉ | 8/9 [00:00<00:00,  9.61it/s]
Processing USP12--RNU6-63P:  89%|████████▉ | 8/9 [00:00<00:00,  9.61it/s]
Processing USP12--RNU6-63P: 100%|██████████| 9/9 [00:00<00:00,  9.61it/s]
Processing USP12--RNU6-63P: 100%|██████████| 9/9 [00:00<00:00,  9.57it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory