[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	257220123
Known Splicing Events:	254346156
Partial Novel Splicing Events:	1394557
Novel Splicing Events:	1314155
Filtered Splicing Events:	165255

Total splicing  Junctions:	417945
Known Splicing Junctions:	229664
Partial Novel Splicing Junctions:	86671
Novel Splicing Junctions:	101610

===================================================================
Create BED file ...
Create Interact file ...