Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/1255565225e1b10442684188dfd0e9/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/5529bc453325f1ea6d87a43591db6f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/5529bc453325f1ea6d87a43591db6f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/1907252517cba2675bb5884f3fe71c/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 257220123
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	257220123
Known Splicing Events:	254346156
Partial Novel Splicing Events:	1394557
Novel Splicing Events:	1314155
Filtered Splicing Events:	165255

Total splicing  Junctions:	417945
Known Splicing Junctions:	229664
Partial Novel Splicing Junctions:	86671
Novel Splicing Junctions:	101610

===================================================================
Create BED file ...
Create Interact file ...