Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/0a78e2001db382ca8e95d0be4d3eb5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/0a78e2001db382ca8e95d0be4d3eb5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/88975e5e83dc7c1b4e05893bafe774/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/f74ae12b94b54a15be04ae346422d9/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1/abundance.h5
Successfully converted BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1/abundance.h5 to BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1
  Mean Fragment Length: 121.0 bp
  Median Fragment Length: 115.0 bp
  pct_mito_est_counts: 0.004%
  pct_ribo_est_counts: 0.701%
  pct_hk_est_counts: 0.398%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.008%
  pct_ribo_tpm: 2.261%
  pct_hk_tpm: 0.63%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.408%