[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	208041661
Known Splicing Events:	205759111
Partial Novel Splicing Events:	1070270
Novel Splicing Events:	1076709
Filtered Splicing Events:	135571

Total splicing  Junctions:	383041
Known Splicing Junctions:	222372
Partial Novel Splicing Junctions:	73528
Novel Splicing Junctions:	87141

===================================================================
Create BED file ...
Create Interact file ...