File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/abb511564063e9697d1f6b7be8f26a/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/abb511564063e9697d1f6b7be8f26a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/abb511564063e9697d1f6b7be8f26a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/e7fe4b48f817cfc84e2177bbff47fd/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/f758e671ab576f3b93b2d94f1ed304/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 208041661
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	208041661
Known Splicing Events:	205759111
Partial Novel Splicing Events:	1070270
Novel Splicing Events:	1076709
Filtered Splicing Events:	135571

Total splicing  Junctions:	383041
Known Splicing Junctions:	222372
Partial Novel Splicing Junctions:	73528
Novel Splicing Junctions:	87141

===================================================================
Create BED file ...
Create Interact file ...