.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/9fac83fbca055d1d2409d65719db7d/.command.sh
Size: 203 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2.md.bam" > BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_2_full_bam_saturation_values.txt